Multiple sequence alignment - TraesCS5D01G151200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G151200 chr5D 100.000 2858 0 0 1 2858 240504066 240501209 0.000000e+00 5278.0
1 TraesCS5D01G151200 chr5D 90.947 243 20 2 571 812 7559950 7559709 2.750000e-85 326.0
2 TraesCS5D01G151200 chr5D 89.575 259 23 4 571 827 451067386 451067130 2.750000e-85 326.0
3 TraesCS5D01G151200 chr5D 91.469 211 14 3 363 571 401319503 401319295 1.300000e-73 287.0
4 TraesCS5D01G151200 chr5A 94.926 1557 57 9 571 2123 313313502 313315040 0.000000e+00 2418.0
5 TraesCS5D01G151200 chr5A 90.191 367 28 3 1 362 313313147 313313510 3.330000e-129 472.0
6 TraesCS5D01G151200 chr5A 85.503 338 30 13 2124 2450 313315147 313315476 4.560000e-88 335.0
7 TraesCS5D01G151200 chr5B 95.458 1299 45 6 814 2107 263220680 263221969 0.000000e+00 2060.0
8 TraesCS5D01G151200 chr5B 88.550 262 23 5 2279 2539 263225836 263226091 7.690000e-81 311.0
9 TraesCS5D01G151200 chr5B 89.302 215 20 3 362 574 441084496 441084709 1.690000e-67 267.0
10 TraesCS5D01G151200 chr5B 85.915 71 5 5 290 357 9071566 9071634 1.420000e-08 71.3
11 TraesCS5D01G151200 chr4D 77.665 788 124 36 1085 1854 109073265 109072512 1.570000e-117 433.0
12 TraesCS5D01G151200 chr4D 88.626 211 22 2 362 570 465357163 465357373 3.650000e-64 255.0
13 TraesCS5D01G151200 chr4D 100.000 28 0 0 322 349 5590033 5590060 5.000000e-03 52.8
14 TraesCS5D01G151200 chrUn 76.884 783 133 33 1085 1854 47068770 47068023 1.600000e-107 399.0
15 TraesCS5D01G151200 chrUn 76.884 783 133 33 1085 1854 288708750 288709497 1.600000e-107 399.0
16 TraesCS5D01G151200 chrUn 88.263 213 21 4 360 571 46000587 46000378 4.730000e-63 252.0
17 TraesCS5D01G151200 chr4B 76.688 785 137 32 1085 1854 167587193 167587946 7.420000e-106 394.0
18 TraesCS5D01G151200 chr2A 77.166 727 118 26 1137 1854 723226099 723226786 2.080000e-101 379.0
19 TraesCS5D01G151200 chr2A 77.500 640 107 24 1229 1854 723237192 723237808 1.630000e-92 350.0
20 TraesCS5D01G151200 chr2A 88.550 262 26 4 571 829 561298998 561298738 5.940000e-82 315.0
21 TraesCS5D01G151200 chr7B 89.535 258 25 2 571 827 378382721 378382465 2.750000e-85 326.0
22 TraesCS5D01G151200 chr3D 90.612 245 21 2 571 814 255424435 255424678 9.880000e-85 324.0
23 TraesCS5D01G151200 chr6D 90.164 244 22 2 571 814 3744205 3743964 1.650000e-82 316.0
24 TraesCS5D01G151200 chr6D 97.500 40 1 0 323 362 344056114 344056153 5.110000e-08 69.4
25 TraesCS5D01G151200 chr3B 90.204 245 21 3 571 814 377115163 377115405 1.650000e-82 316.0
26 TraesCS5D01G151200 chr3B 89.100 211 19 2 363 570 406800883 406801092 2.820000e-65 259.0
27 TraesCS5D01G151200 chr3B 87.097 217 28 0 347 563 66614021 66614237 2.200000e-61 246.0
28 TraesCS5D01G151200 chr7D 88.372 258 26 4 571 827 579964198 579963944 9.950000e-80 307.0
29 TraesCS5D01G151200 chr7A 90.952 210 17 2 363 570 21183288 21183497 6.030000e-72 281.0
30 TraesCS5D01G151200 chr2B 89.573 211 17 4 363 569 693065388 693065597 2.180000e-66 263.0
31 TraesCS5D01G151200 chr6A 87.907 215 20 5 360 570 592358925 592358713 6.110000e-62 248.0
32 TraesCS5D01G151200 chr4A 92.593 54 3 1 310 362 433759029 433758976 3.050000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G151200 chr5D 240501209 240504066 2857 True 5278.0 5278 100.000000 1 2858 1 chr5D.!!$R2 2857
1 TraesCS5D01G151200 chr5A 313313147 313315476 2329 False 1075.0 2418 90.206667 1 2450 3 chr5A.!!$F1 2449
2 TraesCS5D01G151200 chr5B 263220680 263226091 5411 False 1185.5 2060 92.004000 814 2539 2 chr5B.!!$F3 1725
3 TraesCS5D01G151200 chr4D 109072512 109073265 753 True 433.0 433 77.665000 1085 1854 1 chr4D.!!$R1 769
4 TraesCS5D01G151200 chrUn 47068023 47068770 747 True 399.0 399 76.884000 1085 1854 1 chrUn.!!$R2 769
5 TraesCS5D01G151200 chrUn 288708750 288709497 747 False 399.0 399 76.884000 1085 1854 1 chrUn.!!$F1 769
6 TraesCS5D01G151200 chr4B 167587193 167587946 753 False 394.0 394 76.688000 1085 1854 1 chr4B.!!$F1 769
7 TraesCS5D01G151200 chr2A 723226099 723226786 687 False 379.0 379 77.166000 1137 1854 1 chr2A.!!$F1 717
8 TraesCS5D01G151200 chr2A 723237192 723237808 616 False 350.0 350 77.500000 1229 1854 1 chr2A.!!$F2 625

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
417 423 0.036010 CCGTGCTCCCACTTCATTCT 60.036 55.0 0.00 0.00 39.86 2.40 F
524 530 0.163788 CAAGTCAAGCCACTTACGCG 59.836 55.0 3.53 3.53 34.70 6.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1833 1871 1.153046 CCACCACCACAAGAACGGT 60.153 57.895 0.00 0.0 35.27 4.83 R
1918 1956 1.672854 ATGCTCGGCCGCTGTTACTA 61.673 55.000 23.51 0.0 0.00 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.226030 GGGTTTGGGACGACGTCAAG 61.226 60.000 27.77 2.29 33.68 3.02
20 21 0.249573 GGTTTGGGACGACGTCAAGA 60.250 55.000 27.77 10.82 33.68 3.02
90 91 3.717400 TGCCTGAAGAATAGAGCTACG 57.283 47.619 0.00 0.00 0.00 3.51
114 115 4.135493 GTCGGCTTCTTGTCGCGC 62.135 66.667 0.00 0.00 44.46 6.86
152 153 3.375299 CCATCAAGATCTTCAAACCGGAC 59.625 47.826 9.46 0.00 0.00 4.79
162 163 2.406616 AAACCGGACATCATGGCGC 61.407 57.895 9.46 0.00 0.00 6.53
164 165 1.966901 AACCGGACATCATGGCGCTA 61.967 55.000 9.46 0.00 0.00 4.26
181 182 2.223618 CGCTAGGACTAAACTCAGAGGC 60.224 54.545 1.53 0.00 0.00 4.70
259 260 6.543430 TTTTTCTTCCATGGTTATGATGGG 57.457 37.500 12.58 0.00 40.84 4.00
306 307 9.902196 AATCAAATTTTGCTCAATTTTTCCATC 57.098 25.926 4.19 0.00 34.70 3.51
313 314 9.775854 TTTTGCTCAATTTTTCCATCAAATCTA 57.224 25.926 0.00 0.00 0.00 1.98
357 363 8.228464 CGTAAGGTTCTTATTTCACCTTTCTTC 58.772 37.037 8.08 0.00 46.85 2.87
358 364 7.526142 AAGGTTCTTATTTCACCTTTCTTCC 57.474 36.000 0.00 0.00 46.85 3.46
359 365 6.010850 AGGTTCTTATTTCACCTTTCTTCCC 58.989 40.000 0.00 0.00 37.70 3.97
360 366 5.773176 GGTTCTTATTTCACCTTTCTTCCCA 59.227 40.000 0.00 0.00 0.00 4.37
361 367 6.294564 GGTTCTTATTTCACCTTTCTTCCCAC 60.295 42.308 0.00 0.00 0.00 4.61
362 368 5.001232 TCTTATTTCACCTTTCTTCCCACG 58.999 41.667 0.00 0.00 0.00 4.94
363 369 1.975660 TTTCACCTTTCTTCCCACGG 58.024 50.000 0.00 0.00 0.00 4.94
364 370 1.133363 TTCACCTTTCTTCCCACGGA 58.867 50.000 0.00 0.00 0.00 4.69
365 371 1.358152 TCACCTTTCTTCCCACGGAT 58.642 50.000 0.00 0.00 0.00 4.18
366 372 1.278127 TCACCTTTCTTCCCACGGATC 59.722 52.381 0.00 0.00 0.00 3.36
367 373 0.618981 ACCTTTCTTCCCACGGATCC 59.381 55.000 0.00 0.00 0.00 3.36
368 374 0.462047 CCTTTCTTCCCACGGATCCG 60.462 60.000 32.20 32.20 46.03 4.18
378 384 2.892425 CGGATCCGTCTTGCCTGC 60.892 66.667 26.35 0.00 34.35 4.85
379 385 2.586792 GGATCCGTCTTGCCTGCT 59.413 61.111 0.00 0.00 0.00 4.24
380 386 1.522580 GGATCCGTCTTGCCTGCTC 60.523 63.158 0.00 0.00 0.00 4.26
381 387 1.522580 GATCCGTCTTGCCTGCTCC 60.523 63.158 0.00 0.00 0.00 4.70
382 388 2.932130 GATCCGTCTTGCCTGCTCCC 62.932 65.000 0.00 0.00 0.00 4.30
383 389 3.710722 CCGTCTTGCCTGCTCCCT 61.711 66.667 0.00 0.00 0.00 4.20
384 390 2.125350 CGTCTTGCCTGCTCCCTC 60.125 66.667 0.00 0.00 0.00 4.30
385 391 2.270527 GTCTTGCCTGCTCCCTCC 59.729 66.667 0.00 0.00 0.00 4.30
386 392 3.011517 TCTTGCCTGCTCCCTCCC 61.012 66.667 0.00 0.00 0.00 4.30
387 393 4.120755 CTTGCCTGCTCCCTCCCC 62.121 72.222 0.00 0.00 0.00 4.81
389 395 4.765970 TGCCTGCTCCCTCCCCAT 62.766 66.667 0.00 0.00 0.00 4.00
390 396 4.201122 GCCTGCTCCCTCCCCATG 62.201 72.222 0.00 0.00 0.00 3.66
391 397 4.201122 CCTGCTCCCTCCCCATGC 62.201 72.222 0.00 0.00 0.00 4.06
392 398 3.095163 CTGCTCCCTCCCCATGCT 61.095 66.667 0.00 0.00 0.00 3.79
393 399 2.614969 TGCTCCCTCCCCATGCTT 60.615 61.111 0.00 0.00 0.00 3.91
394 400 2.194326 GCTCCCTCCCCATGCTTC 59.806 66.667 0.00 0.00 0.00 3.86
395 401 2.922234 CTCCCTCCCCATGCTTCC 59.078 66.667 0.00 0.00 0.00 3.46
396 402 2.002977 CTCCCTCCCCATGCTTCCA 61.003 63.158 0.00 0.00 0.00 3.53
397 403 1.309013 TCCCTCCCCATGCTTCCAT 60.309 57.895 0.00 0.00 0.00 3.41
398 404 1.152368 CCCTCCCCATGCTTCCATC 59.848 63.158 0.00 0.00 0.00 3.51
399 405 1.152368 CCTCCCCATGCTTCCATCC 59.848 63.158 0.00 0.00 0.00 3.51
400 406 1.228063 CTCCCCATGCTTCCATCCG 60.228 63.158 0.00 0.00 0.00 4.18
401 407 1.987807 CTCCCCATGCTTCCATCCGT 61.988 60.000 0.00 0.00 0.00 4.69
402 408 1.825191 CCCCATGCTTCCATCCGTG 60.825 63.158 0.00 0.00 0.00 4.94
403 409 2.484062 CCCATGCTTCCATCCGTGC 61.484 63.158 0.00 0.00 0.00 5.34
404 410 1.452651 CCATGCTTCCATCCGTGCT 60.453 57.895 0.00 0.00 0.00 4.40
405 411 1.442526 CCATGCTTCCATCCGTGCTC 61.443 60.000 0.00 0.00 0.00 4.26
406 412 1.153086 ATGCTTCCATCCGTGCTCC 60.153 57.895 0.00 0.00 0.00 4.70
407 413 2.514824 GCTTCCATCCGTGCTCCC 60.515 66.667 0.00 0.00 0.00 4.30
408 414 2.989639 CTTCCATCCGTGCTCCCA 59.010 61.111 0.00 0.00 0.00 4.37
409 415 1.450312 CTTCCATCCGTGCTCCCAC 60.450 63.158 0.00 0.00 38.62 4.61
410 416 1.903877 CTTCCATCCGTGCTCCCACT 61.904 60.000 0.00 0.00 39.86 4.00
411 417 1.488705 TTCCATCCGTGCTCCCACTT 61.489 55.000 0.00 0.00 39.86 3.16
412 418 1.450312 CCATCCGTGCTCCCACTTC 60.450 63.158 0.00 0.00 39.86 3.01
413 419 1.296392 CATCCGTGCTCCCACTTCA 59.704 57.895 0.00 0.00 39.86 3.02
414 420 0.107508 CATCCGTGCTCCCACTTCAT 60.108 55.000 0.00 0.00 39.86 2.57
415 421 0.620556 ATCCGTGCTCCCACTTCATT 59.379 50.000 0.00 0.00 39.86 2.57
416 422 0.036388 TCCGTGCTCCCACTTCATTC 60.036 55.000 0.00 0.00 39.86 2.67
417 423 0.036010 CCGTGCTCCCACTTCATTCT 60.036 55.000 0.00 0.00 39.86 2.40
418 424 1.207089 CCGTGCTCCCACTTCATTCTA 59.793 52.381 0.00 0.00 39.86 2.10
419 425 2.158900 CCGTGCTCCCACTTCATTCTAT 60.159 50.000 0.00 0.00 39.86 1.98
420 426 2.868583 CGTGCTCCCACTTCATTCTATG 59.131 50.000 0.00 0.00 39.86 2.23
421 427 3.209410 GTGCTCCCACTTCATTCTATGG 58.791 50.000 0.00 0.00 38.93 2.74
422 428 2.225467 GCTCCCACTTCATTCTATGGC 58.775 52.381 0.00 0.00 0.00 4.40
423 429 2.158696 GCTCCCACTTCATTCTATGGCT 60.159 50.000 0.00 0.00 0.00 4.75
424 430 3.474600 CTCCCACTTCATTCTATGGCTG 58.525 50.000 0.00 0.00 0.00 4.85
425 431 2.846206 TCCCACTTCATTCTATGGCTGT 59.154 45.455 0.00 0.00 0.00 4.40
426 432 3.266772 TCCCACTTCATTCTATGGCTGTT 59.733 43.478 0.00 0.00 0.00 3.16
427 433 4.019174 CCCACTTCATTCTATGGCTGTTT 58.981 43.478 0.00 0.00 0.00 2.83
428 434 4.463891 CCCACTTCATTCTATGGCTGTTTT 59.536 41.667 0.00 0.00 0.00 2.43
429 435 5.047092 CCCACTTCATTCTATGGCTGTTTTT 60.047 40.000 0.00 0.00 0.00 1.94
458 464 9.462606 TTCCTTTTTCCTTCCTAATCTAATCAC 57.537 33.333 0.00 0.00 0.00 3.06
459 465 8.053355 TCCTTTTTCCTTCCTAATCTAATCACC 58.947 37.037 0.00 0.00 0.00 4.02
460 466 7.285629 CCTTTTTCCTTCCTAATCTAATCACCC 59.714 40.741 0.00 0.00 0.00 4.61
461 467 5.906772 TTCCTTCCTAATCTAATCACCCC 57.093 43.478 0.00 0.00 0.00 4.95
462 468 4.240323 TCCTTCCTAATCTAATCACCCCC 58.760 47.826 0.00 0.00 0.00 5.40
480 486 1.470051 CCCTGATTTTAACGGGGTGG 58.530 55.000 0.00 0.00 45.91 4.61
481 487 1.470051 CCTGATTTTAACGGGGTGGG 58.530 55.000 0.00 0.00 0.00 4.61
482 488 0.815095 CTGATTTTAACGGGGTGGGC 59.185 55.000 0.00 0.00 0.00 5.36
483 489 0.612453 TGATTTTAACGGGGTGGGCC 60.612 55.000 0.00 0.00 0.00 5.80
493 499 3.094498 GGTGGGCCCGGGTCTTAT 61.094 66.667 27.44 0.00 0.00 1.73
494 500 2.686572 GGTGGGCCCGGGTCTTATT 61.687 63.158 27.44 0.00 0.00 1.40
495 501 1.305287 GTGGGCCCGGGTCTTATTT 59.695 57.895 27.44 0.00 0.00 1.40
496 502 0.323999 GTGGGCCCGGGTCTTATTTT 60.324 55.000 27.44 0.00 0.00 1.82
497 503 0.323908 TGGGCCCGGGTCTTATTTTG 60.324 55.000 27.44 0.00 0.00 2.44
498 504 0.323999 GGGCCCGGGTCTTATTTTGT 60.324 55.000 27.44 0.00 0.00 2.83
499 505 1.552578 GGCCCGGGTCTTATTTTGTT 58.447 50.000 24.63 0.00 0.00 2.83
500 506 1.475280 GGCCCGGGTCTTATTTTGTTC 59.525 52.381 24.63 0.00 0.00 3.18
501 507 1.475280 GCCCGGGTCTTATTTTGTTCC 59.525 52.381 24.63 0.00 0.00 3.62
502 508 2.797786 CCCGGGTCTTATTTTGTTCCA 58.202 47.619 14.18 0.00 0.00 3.53
503 509 3.158676 CCCGGGTCTTATTTTGTTCCAA 58.841 45.455 14.18 0.00 0.00 3.53
504 510 3.767131 CCCGGGTCTTATTTTGTTCCAAT 59.233 43.478 14.18 0.00 0.00 3.16
505 511 4.142249 CCCGGGTCTTATTTTGTTCCAATC 60.142 45.833 14.18 0.00 0.00 2.67
506 512 4.461081 CCGGGTCTTATTTTGTTCCAATCA 59.539 41.667 0.00 0.00 0.00 2.57
507 513 5.047660 CCGGGTCTTATTTTGTTCCAATCAA 60.048 40.000 0.00 0.00 0.00 2.57
508 514 6.092748 CGGGTCTTATTTTGTTCCAATCAAG 58.907 40.000 0.00 0.00 0.00 3.02
509 515 6.294508 CGGGTCTTATTTTGTTCCAATCAAGT 60.295 38.462 0.00 0.00 0.00 3.16
510 516 7.090808 GGGTCTTATTTTGTTCCAATCAAGTC 58.909 38.462 0.00 0.00 0.00 3.01
511 517 7.255801 GGGTCTTATTTTGTTCCAATCAAGTCA 60.256 37.037 0.00 0.00 0.00 3.41
512 518 8.141268 GGTCTTATTTTGTTCCAATCAAGTCAA 58.859 33.333 0.00 0.00 0.00 3.18
513 519 9.185192 GTCTTATTTTGTTCCAATCAAGTCAAG 57.815 33.333 0.00 0.00 0.00 3.02
514 520 7.867403 TCTTATTTTGTTCCAATCAAGTCAAGC 59.133 33.333 0.00 0.00 0.00 4.01
515 521 4.320608 TTTGTTCCAATCAAGTCAAGCC 57.679 40.909 0.00 0.00 0.00 4.35
516 522 2.942804 TGTTCCAATCAAGTCAAGCCA 58.057 42.857 0.00 0.00 0.00 4.75
517 523 2.622942 TGTTCCAATCAAGTCAAGCCAC 59.377 45.455 0.00 0.00 0.00 5.01
518 524 2.887152 GTTCCAATCAAGTCAAGCCACT 59.113 45.455 0.00 0.00 0.00 4.00
519 525 3.228188 TCCAATCAAGTCAAGCCACTT 57.772 42.857 0.00 0.00 37.05 3.16
520 526 4.365514 TCCAATCAAGTCAAGCCACTTA 57.634 40.909 0.00 0.00 34.70 2.24
521 527 4.072131 TCCAATCAAGTCAAGCCACTTAC 58.928 43.478 0.00 0.00 34.70 2.34
522 528 3.120199 CCAATCAAGTCAAGCCACTTACG 60.120 47.826 0.00 0.00 34.70 3.18
523 529 1.508632 TCAAGTCAAGCCACTTACGC 58.491 50.000 0.00 0.00 34.70 4.42
524 530 0.163788 CAAGTCAAGCCACTTACGCG 59.836 55.000 3.53 3.53 34.70 6.01
525 531 0.949105 AAGTCAAGCCACTTACGCGG 60.949 55.000 12.47 0.00 34.70 6.46
526 532 2.047655 TCAAGCCACTTACGCGGG 60.048 61.111 12.47 1.71 0.00 6.13
527 533 2.047655 CAAGCCACTTACGCGGGA 60.048 61.111 12.47 0.00 0.00 5.14
528 534 2.100631 CAAGCCACTTACGCGGGAG 61.101 63.158 12.47 10.46 0.00 4.30
540 546 4.873129 CGGGAGCACGGATGGACG 62.873 72.222 0.00 0.00 40.31 4.79
542 548 4.451150 GGAGCACGGATGGACGCA 62.451 66.667 0.00 0.00 37.37 5.24
543 549 3.188786 GAGCACGGATGGACGCAC 61.189 66.667 0.00 0.00 37.37 5.34
568 574 3.482783 GCGCAGGCAAGTCTCGTC 61.483 66.667 0.30 0.00 39.62 4.20
569 575 2.811317 CGCAGGCAAGTCTCGTCC 60.811 66.667 0.00 0.00 0.00 4.79
570 576 2.659610 GCAGGCAAGTCTCGTCCT 59.340 61.111 0.00 0.00 0.00 3.85
571 577 1.446966 GCAGGCAAGTCTCGTCCTC 60.447 63.158 0.00 0.00 0.00 3.71
572 578 1.882989 GCAGGCAAGTCTCGTCCTCT 61.883 60.000 0.00 0.00 0.00 3.69
573 579 0.605589 CAGGCAAGTCTCGTCCTCTT 59.394 55.000 0.00 0.00 0.00 2.85
652 658 6.575162 ACTTACATTCTGAACCAATTCCAC 57.425 37.500 0.00 0.00 33.49 4.02
756 763 8.556194 TCACATTATTATTGACAGGTAAATCGC 58.444 33.333 0.00 0.00 0.00 4.58
771 778 5.689068 GGTAAATCGCAAGCTAACGTACTAT 59.311 40.000 8.02 0.00 37.18 2.12
796 803 7.681939 AATATTTATATCCGGTTGCAATCGT 57.318 32.000 28.76 15.24 0.00 3.73
797 804 8.780846 AATATTTATATCCGGTTGCAATCGTA 57.219 30.769 28.76 16.03 0.00 3.43
798 805 6.721571 ATTTATATCCGGTTGCAATCGTAG 57.278 37.500 28.76 15.80 0.00 3.51
804 811 0.751643 GGTTGCAATCGTAGGGGCAT 60.752 55.000 0.59 0.00 35.98 4.40
806 813 1.102154 TTGCAATCGTAGGGGCATTG 58.898 50.000 0.00 0.00 35.98 2.82
809 816 2.294074 GCAATCGTAGGGGCATTGTTA 58.706 47.619 0.00 0.00 31.29 2.41
847 855 2.757980 TAGGCCCGGTTTGAACAGCC 62.758 60.000 0.00 2.86 39.79 4.85
858 866 1.649321 TGAACAGCCTGAGATGACCT 58.351 50.000 0.00 0.00 32.31 3.85
862 870 3.064900 ACAGCCTGAGATGACCTTTTC 57.935 47.619 0.00 0.00 32.31 2.29
863 871 2.290577 ACAGCCTGAGATGACCTTTTCC 60.291 50.000 0.00 0.00 32.31 3.13
864 872 1.283321 AGCCTGAGATGACCTTTTCCC 59.717 52.381 0.00 0.00 0.00 3.97
865 873 1.283321 GCCTGAGATGACCTTTTCCCT 59.717 52.381 0.00 0.00 0.00 4.20
866 874 2.682269 GCCTGAGATGACCTTTTCCCTC 60.682 54.545 0.00 0.00 0.00 4.30
867 875 2.092699 CCTGAGATGACCTTTTCCCTCC 60.093 54.545 0.00 0.00 0.00 4.30
868 876 1.916181 TGAGATGACCTTTTCCCTCCC 59.084 52.381 0.00 0.00 0.00 4.30
869 877 0.912486 AGATGACCTTTTCCCTCCCG 59.088 55.000 0.00 0.00 0.00 5.14
870 878 0.748367 GATGACCTTTTCCCTCCCGC 60.748 60.000 0.00 0.00 0.00 6.13
871 879 1.208165 ATGACCTTTTCCCTCCCGCT 61.208 55.000 0.00 0.00 0.00 5.52
872 880 1.379146 GACCTTTTCCCTCCCGCTT 59.621 57.895 0.00 0.00 0.00 4.68
873 881 0.960861 GACCTTTTCCCTCCCGCTTG 60.961 60.000 0.00 0.00 0.00 4.01
874 882 1.074951 CCTTTTCCCTCCCGCTTGT 59.925 57.895 0.00 0.00 0.00 3.16
875 883 0.960861 CCTTTTCCCTCCCGCTTGTC 60.961 60.000 0.00 0.00 0.00 3.18
1125 1154 4.722700 CCGCTCCACCCCACCTTG 62.723 72.222 0.00 0.00 0.00 3.61
1227 1256 2.820037 GCCAGCCGGTACAAGAGC 60.820 66.667 1.90 0.00 33.28 4.09
1488 1517 1.228154 GAACAGGAAGGTGGGCGTT 60.228 57.895 0.00 0.00 0.00 4.84
1611 1640 4.671590 TCCACGACGCTGAGGGGA 62.672 66.667 0.51 0.00 0.00 4.81
1781 1819 1.525077 GCCAGGTGACGGTTGACAA 60.525 57.895 0.00 0.00 0.00 3.18
1833 1871 1.899437 GATGCCGGGTCAAGGTCAGA 61.899 60.000 2.18 0.00 0.00 3.27
1918 1956 2.113860 ATGTGTCAACGGCTAGCAAT 57.886 45.000 18.24 0.00 0.00 3.56
2164 5945 8.932791 ACTACAAAAGGATTATTACAAGACACG 58.067 33.333 0.00 0.00 0.00 4.49
2168 5949 9.916397 CAAAAGGATTATTACAAGACACGATAC 57.084 33.333 0.00 0.00 0.00 2.24
2170 5951 8.873215 AAGGATTATTACAAGACACGATACAG 57.127 34.615 0.00 0.00 0.00 2.74
2208 5989 8.902806 TGGAAGTAATTTTGGTCTATGCTTATG 58.097 33.333 0.00 0.00 0.00 1.90
2222 6003 8.338259 GTCTATGCTTATGGTTTCACATACAAG 58.662 37.037 0.00 0.00 33.33 3.16
2223 6004 8.264347 TCTATGCTTATGGTTTCACATACAAGA 58.736 33.333 0.00 0.00 33.33 3.02
2224 6005 6.741992 TGCTTATGGTTTCACATACAAGAG 57.258 37.500 0.00 0.00 33.33 2.85
2225 6006 6.237901 TGCTTATGGTTTCACATACAAGAGT 58.762 36.000 0.00 0.00 33.33 3.24
2227 6008 8.046708 TGCTTATGGTTTCACATACAAGAGTAT 58.953 33.333 0.00 0.00 41.57 2.12
2274 6111 4.584743 AGTGAAAGGGTTAAAAGCTTCCAG 59.415 41.667 0.00 0.00 0.00 3.86
2276 6113 4.827284 TGAAAGGGTTAAAAGCTTCCAGAG 59.173 41.667 0.00 0.00 0.00 3.35
2391 6245 9.181061 TGGTTAACTAATTAATTACCTGCCTTC 57.819 33.333 15.02 0.75 32.91 3.46
2395 6249 8.738645 AACTAATTAATTACCTGCCTTCTCAG 57.261 34.615 3.71 0.00 0.00 3.35
2472 6330 8.434589 ACCTTCTTTGATTAAAATGAATCCCA 57.565 30.769 0.00 0.00 35.34 4.37
2516 6374 5.628797 TTTTTGGCTGGAAGAAGGATTTT 57.371 34.783 0.00 0.00 34.07 1.82
2521 6379 5.579047 TGGCTGGAAGAAGGATTTTTCATA 58.421 37.500 0.00 0.00 34.07 2.15
2551 6409 8.935844 AGTTTGTTTGATTTTTCAAAAGAGTCC 58.064 29.630 2.93 0.00 40.70 3.85
2552 6410 8.716909 GTTTGTTTGATTTTTCAAAAGAGTCCA 58.283 29.630 2.93 0.00 40.70 4.02
2553 6411 8.839310 TTGTTTGATTTTTCAAAAGAGTCCAA 57.161 26.923 2.93 0.77 40.70 3.53
2554 6412 8.250538 TGTTTGATTTTTCAAAAGAGTCCAAC 57.749 30.769 2.93 0.00 40.70 3.77
2555 6413 7.333174 TGTTTGATTTTTCAAAAGAGTCCAACC 59.667 33.333 2.93 0.00 40.70 3.77
2556 6414 6.790232 TGATTTTTCAAAAGAGTCCAACCT 57.210 33.333 0.00 0.00 0.00 3.50
2557 6415 6.805713 TGATTTTTCAAAAGAGTCCAACCTC 58.194 36.000 0.00 0.00 0.00 3.85
2558 6416 6.379703 TGATTTTTCAAAAGAGTCCAACCTCA 59.620 34.615 0.00 0.00 33.75 3.86
2559 6417 6.790232 TTTTTCAAAAGAGTCCAACCTCAT 57.210 33.333 0.00 0.00 33.75 2.90
2560 6418 7.889873 TTTTTCAAAAGAGTCCAACCTCATA 57.110 32.000 0.00 0.00 33.75 2.15
2561 6419 7.889873 TTTTCAAAAGAGTCCAACCTCATAA 57.110 32.000 0.00 0.00 33.75 1.90
2562 6420 8.477419 TTTTCAAAAGAGTCCAACCTCATAAT 57.523 30.769 0.00 0.00 33.75 1.28
2563 6421 8.477419 TTTCAAAAGAGTCCAACCTCATAATT 57.523 30.769 0.00 0.00 33.75 1.40
2564 6422 8.477419 TTCAAAAGAGTCCAACCTCATAATTT 57.523 30.769 0.00 0.00 33.75 1.82
2565 6423 8.477419 TCAAAAGAGTCCAACCTCATAATTTT 57.523 30.769 0.00 0.00 33.75 1.82
2566 6424 8.923270 TCAAAAGAGTCCAACCTCATAATTTTT 58.077 29.630 0.00 0.00 33.75 1.94
2590 6448 8.909708 TTTTCAGACTTGTTTTGACAATAGTG 57.090 30.769 0.00 0.00 0.00 2.74
2591 6449 7.624360 TTCAGACTTGTTTTGACAATAGTGT 57.376 32.000 0.00 0.00 42.10 3.55
2592 6450 8.725405 TTCAGACTTGTTTTGACAATAGTGTA 57.275 30.769 0.00 0.00 38.41 2.90
2593 6451 8.365399 TCAGACTTGTTTTGACAATAGTGTAG 57.635 34.615 0.00 0.00 38.41 2.74
2594 6452 7.042051 TCAGACTTGTTTTGACAATAGTGTAGC 60.042 37.037 0.00 0.00 38.41 3.58
2595 6453 6.204882 AGACTTGTTTTGACAATAGTGTAGCC 59.795 38.462 0.00 0.00 38.41 3.93
2596 6454 5.240844 ACTTGTTTTGACAATAGTGTAGCCC 59.759 40.000 0.00 0.00 38.41 5.19
2597 6455 4.076394 TGTTTTGACAATAGTGTAGCCCC 58.924 43.478 0.00 0.00 38.41 5.80
2598 6456 4.202524 TGTTTTGACAATAGTGTAGCCCCT 60.203 41.667 0.00 0.00 38.41 4.79
2599 6457 3.906720 TTGACAATAGTGTAGCCCCTC 57.093 47.619 0.00 0.00 38.41 4.30
2600 6458 2.827755 TGACAATAGTGTAGCCCCTCA 58.172 47.619 0.00 0.00 38.41 3.86
2601 6459 2.766263 TGACAATAGTGTAGCCCCTCAG 59.234 50.000 0.00 0.00 38.41 3.35
2602 6460 3.031736 GACAATAGTGTAGCCCCTCAGA 58.968 50.000 0.00 0.00 38.41 3.27
2603 6461 3.450904 ACAATAGTGTAGCCCCTCAGAA 58.549 45.455 0.00 0.00 35.72 3.02
2604 6462 4.040755 ACAATAGTGTAGCCCCTCAGAAT 58.959 43.478 0.00 0.00 35.72 2.40
2605 6463 5.216622 ACAATAGTGTAGCCCCTCAGAATA 58.783 41.667 0.00 0.00 35.72 1.75
2606 6464 5.846714 ACAATAGTGTAGCCCCTCAGAATAT 59.153 40.000 0.00 0.00 35.72 1.28
2607 6465 7.016914 ACAATAGTGTAGCCCCTCAGAATATA 58.983 38.462 0.00 0.00 35.72 0.86
2608 6466 7.179338 ACAATAGTGTAGCCCCTCAGAATATAG 59.821 40.741 0.00 0.00 35.72 1.31
2609 6467 5.081315 AGTGTAGCCCCTCAGAATATAGT 57.919 43.478 0.00 0.00 0.00 2.12
2610 6468 6.215515 AGTGTAGCCCCTCAGAATATAGTA 57.784 41.667 0.00 0.00 0.00 1.82
2611 6469 6.011481 AGTGTAGCCCCTCAGAATATAGTAC 58.989 44.000 0.00 0.00 0.00 2.73
2612 6470 6.011481 GTGTAGCCCCTCAGAATATAGTACT 58.989 44.000 0.00 0.00 0.00 2.73
2613 6471 6.494146 GTGTAGCCCCTCAGAATATAGTACTT 59.506 42.308 0.00 0.00 0.00 2.24
2614 6472 6.493802 TGTAGCCCCTCAGAATATAGTACTTG 59.506 42.308 0.00 0.00 0.00 3.16
2615 6473 5.468658 AGCCCCTCAGAATATAGTACTTGT 58.531 41.667 0.00 0.00 0.00 3.16
2616 6474 5.540719 AGCCCCTCAGAATATAGTACTTGTC 59.459 44.000 0.00 0.00 0.00 3.18
2617 6475 5.540719 GCCCCTCAGAATATAGTACTTGTCT 59.459 44.000 0.00 0.00 0.00 3.41
2618 6476 6.042208 GCCCCTCAGAATATAGTACTTGTCTT 59.958 42.308 0.00 0.00 0.00 3.01
2619 6477 7.419172 GCCCCTCAGAATATAGTACTTGTCTTT 60.419 40.741 0.00 0.00 0.00 2.52
2620 6478 8.487028 CCCCTCAGAATATAGTACTTGTCTTTT 58.513 37.037 0.00 0.00 0.00 2.27
2621 6479 9.892130 CCCTCAGAATATAGTACTTGTCTTTTT 57.108 33.333 0.00 0.00 0.00 1.94
2643 6501 7.856145 TTTTATTTGGTGCAATGAAACAACT 57.144 28.000 0.00 0.00 0.00 3.16
2644 6502 7.856145 TTTATTTGGTGCAATGAAACAACTT 57.144 28.000 0.00 0.00 0.00 2.66
2645 6503 7.856145 TTATTTGGTGCAATGAAACAACTTT 57.144 28.000 0.00 0.00 0.00 2.66
2646 6504 6.756299 ATTTGGTGCAATGAAACAACTTTT 57.244 29.167 0.00 0.00 0.00 2.27
2647 6505 5.542616 TTGGTGCAATGAAACAACTTTTG 57.457 34.783 0.00 0.00 0.00 2.44
2680 6538 9.689501 TTTTTGTCTTCTTAAAAGGAGGTTAGA 57.310 29.630 0.00 0.00 32.21 2.10
2681 6539 8.904099 TTTGTCTTCTTAAAAGGAGGTTAGAG 57.096 34.615 0.00 0.00 32.21 2.43
2682 6540 6.465084 TGTCTTCTTAAAAGGAGGTTAGAGC 58.535 40.000 0.00 0.00 32.21 4.09
2683 6541 5.875910 GTCTTCTTAAAAGGAGGTTAGAGCC 59.124 44.000 0.00 0.00 32.21 4.70
2684 6542 4.838904 TCTTAAAAGGAGGTTAGAGCCC 57.161 45.455 0.00 0.00 0.00 5.19
2685 6543 3.522343 TCTTAAAAGGAGGTTAGAGCCCC 59.478 47.826 0.00 0.00 0.00 5.80
2686 6544 0.618981 AAAAGGAGGTTAGAGCCCCG 59.381 55.000 0.00 0.00 0.00 5.73
2687 6545 1.272554 AAAGGAGGTTAGAGCCCCGG 61.273 60.000 0.00 0.00 0.00 5.73
2688 6546 3.862991 GGAGGTTAGAGCCCCGGC 61.863 72.222 0.00 0.00 42.33 6.13
2689 6547 3.862991 GAGGTTAGAGCCCCGGCC 61.863 72.222 1.02 0.00 43.17 6.13
2690 6548 4.416601 AGGTTAGAGCCCCGGCCT 62.417 66.667 0.00 2.13 43.17 5.19
2691 6549 3.862991 GGTTAGAGCCCCGGCCTC 61.863 72.222 11.26 11.26 43.17 4.70
2692 6550 2.764547 GTTAGAGCCCCGGCCTCT 60.765 66.667 21.72 21.72 43.17 3.69
2693 6551 2.764128 TTAGAGCCCCGGCCTCTG 60.764 66.667 24.86 0.77 43.17 3.35
2699 6557 3.882326 CCCCGGCCTCTGCATCAT 61.882 66.667 0.00 0.00 40.13 2.45
2700 6558 2.194056 CCCGGCCTCTGCATCATT 59.806 61.111 0.00 0.00 40.13 2.57
2701 6559 2.191513 CCCGGCCTCTGCATCATTG 61.192 63.158 0.00 0.00 40.13 2.82
2714 6572 4.256140 GCATCATTGCGATATACTCAGC 57.744 45.455 0.00 0.00 39.49 4.26
2715 6573 3.063180 GCATCATTGCGATATACTCAGCC 59.937 47.826 0.00 0.00 39.49 4.85
2716 6574 4.502016 CATCATTGCGATATACTCAGCCT 58.498 43.478 0.00 0.00 31.20 4.58
2717 6575 3.917988 TCATTGCGATATACTCAGCCTG 58.082 45.455 0.00 0.00 0.00 4.85
2718 6576 2.820059 TTGCGATATACTCAGCCTGG 57.180 50.000 0.00 0.00 0.00 4.45
2719 6577 0.318441 TGCGATATACTCAGCCTGGC 59.682 55.000 11.65 11.65 0.00 4.85
2720 6578 0.605589 GCGATATACTCAGCCTGGCT 59.394 55.000 17.22 17.22 40.77 4.75
2721 6579 1.001406 GCGATATACTCAGCCTGGCTT 59.999 52.381 20.79 7.63 36.40 4.35
2722 6580 2.681706 CGATATACTCAGCCTGGCTTG 58.318 52.381 20.79 17.06 36.40 4.01
2723 6581 2.611473 CGATATACTCAGCCTGGCTTGG 60.611 54.545 20.79 16.60 36.40 3.61
2734 6592 2.903357 GGCTTGGCCTCGAGATCA 59.097 61.111 15.71 8.81 46.69 2.92
2735 6593 1.221840 GGCTTGGCCTCGAGATCAA 59.778 57.895 15.71 15.81 46.69 2.57
2736 6594 0.392998 GGCTTGGCCTCGAGATCAAA 60.393 55.000 15.71 4.18 46.69 2.69
2737 6595 1.453155 GCTTGGCCTCGAGATCAAAA 58.547 50.000 15.71 3.40 0.00 2.44
2738 6596 1.812571 GCTTGGCCTCGAGATCAAAAA 59.187 47.619 15.71 0.00 0.00 1.94
2739 6597 2.414691 GCTTGGCCTCGAGATCAAAAAC 60.415 50.000 15.71 6.64 0.00 2.43
2740 6598 1.438651 TGGCCTCGAGATCAAAAACG 58.561 50.000 15.71 0.00 0.00 3.60
2741 6599 1.270625 TGGCCTCGAGATCAAAAACGT 60.271 47.619 15.71 0.00 0.00 3.99
2742 6600 1.393883 GGCCTCGAGATCAAAAACGTC 59.606 52.381 15.71 0.00 0.00 4.34
2743 6601 2.066262 GCCTCGAGATCAAAAACGTCA 58.934 47.619 15.71 0.00 0.00 4.35
2744 6602 2.478894 GCCTCGAGATCAAAAACGTCAA 59.521 45.455 15.71 0.00 0.00 3.18
2745 6603 3.664537 GCCTCGAGATCAAAAACGTCAAC 60.665 47.826 15.71 0.00 0.00 3.18
2746 6604 3.421826 CCTCGAGATCAAAAACGTCAACG 60.422 47.826 15.71 0.12 46.33 4.10
2747 6605 3.373849 TCGAGATCAAAAACGTCAACGA 58.626 40.909 9.88 0.00 43.02 3.85
2748 6606 3.424198 TCGAGATCAAAAACGTCAACGAG 59.576 43.478 9.88 0.00 43.02 4.18
2749 6607 3.181774 CGAGATCAAAAACGTCAACGAGT 59.818 43.478 9.88 0.00 43.02 4.18
2750 6608 4.317839 CGAGATCAAAAACGTCAACGAGTT 60.318 41.667 9.88 0.24 43.02 3.01
2751 6609 4.833126 AGATCAAAAACGTCAACGAGTTG 58.167 39.130 9.88 9.51 43.02 3.16
2752 6610 2.776330 TCAAAAACGTCAACGAGTTGC 58.224 42.857 9.88 5.87 43.02 4.17
2753 6611 2.159824 TCAAAAACGTCAACGAGTTGCA 59.840 40.909 9.88 0.00 43.02 4.08
2754 6612 3.105203 CAAAAACGTCAACGAGTTGCAT 58.895 40.909 9.88 0.00 43.02 3.96
2755 6613 4.034163 TCAAAAACGTCAACGAGTTGCATA 59.966 37.500 9.88 0.00 43.02 3.14
2756 6614 4.742438 AAAACGTCAACGAGTTGCATAT 57.258 36.364 9.88 0.00 43.02 1.78
2757 6615 4.742438 AAACGTCAACGAGTTGCATATT 57.258 36.364 9.88 2.12 43.02 1.28
2758 6616 3.991605 ACGTCAACGAGTTGCATATTC 57.008 42.857 9.88 0.00 43.02 1.75
2759 6617 2.344441 ACGTCAACGAGTTGCATATTCG 59.656 45.455 9.88 11.85 43.02 3.34
2791 6649 8.365060 TCCTCCCATTATTGCATTTATATTGG 57.635 34.615 9.45 9.45 32.55 3.16
2792 6650 7.043565 CCTCCCATTATTGCATTTATATTGGC 58.956 38.462 10.43 0.00 31.91 4.52
2793 6651 7.093201 CCTCCCATTATTGCATTTATATTGGCT 60.093 37.037 10.43 0.00 31.91 4.75
2794 6652 7.613585 TCCCATTATTGCATTTATATTGGCTG 58.386 34.615 10.43 2.28 31.91 4.85
2795 6653 7.454066 TCCCATTATTGCATTTATATTGGCTGA 59.546 33.333 10.43 3.94 31.91 4.26
2796 6654 7.762615 CCCATTATTGCATTTATATTGGCTGAG 59.237 37.037 10.43 0.00 31.91 3.35
2797 6655 8.308931 CCATTATTGCATTTATATTGGCTGAGT 58.691 33.333 5.35 0.00 0.00 3.41
2798 6656 9.350357 CATTATTGCATTTATATTGGCTGAGTC 57.650 33.333 0.00 0.00 0.00 3.36
2799 6657 6.964807 ATTGCATTTATATTGGCTGAGTCA 57.035 33.333 0.00 0.00 0.00 3.41
2800 6658 6.964807 TTGCATTTATATTGGCTGAGTCAT 57.035 33.333 0.00 0.00 0.00 3.06
2801 6659 8.640063 ATTGCATTTATATTGGCTGAGTCATA 57.360 30.769 0.00 0.00 0.00 2.15
2802 6660 8.640063 TTGCATTTATATTGGCTGAGTCATAT 57.360 30.769 0.00 0.00 0.00 1.78
2803 6661 8.272545 TGCATTTATATTGGCTGAGTCATATC 57.727 34.615 0.00 0.00 0.00 1.63
2804 6662 7.884354 TGCATTTATATTGGCTGAGTCATATCA 59.116 33.333 0.00 0.00 0.00 2.15
2805 6663 8.180267 GCATTTATATTGGCTGAGTCATATCAC 58.820 37.037 0.00 0.00 0.00 3.06
2806 6664 8.671921 CATTTATATTGGCTGAGTCATATCACC 58.328 37.037 0.00 0.00 0.00 4.02
2807 6665 5.830799 ATATTGGCTGAGTCATATCACCA 57.169 39.130 0.00 0.00 32.27 4.17
2808 6666 3.548745 TTGGCTGAGTCATATCACCAG 57.451 47.619 0.00 0.00 34.26 4.00
2809 6667 1.764723 TGGCTGAGTCATATCACCAGG 59.235 52.381 0.00 0.00 31.27 4.45
2810 6668 1.071385 GGCTGAGTCATATCACCAGGG 59.929 57.143 0.00 0.00 0.00 4.45
2811 6669 1.765314 GCTGAGTCATATCACCAGGGT 59.235 52.381 0.00 0.00 0.00 4.34
2812 6670 2.171448 GCTGAGTCATATCACCAGGGTT 59.829 50.000 0.00 0.00 0.00 4.11
2813 6671 3.370953 GCTGAGTCATATCACCAGGGTTT 60.371 47.826 0.00 0.00 0.00 3.27
2814 6672 4.848357 CTGAGTCATATCACCAGGGTTTT 58.152 43.478 0.00 0.00 0.00 2.43
2815 6673 4.843728 TGAGTCATATCACCAGGGTTTTC 58.156 43.478 0.00 0.00 0.00 2.29
2816 6674 4.536090 TGAGTCATATCACCAGGGTTTTCT 59.464 41.667 0.00 0.00 0.00 2.52
2817 6675 5.014123 TGAGTCATATCACCAGGGTTTTCTT 59.986 40.000 0.00 0.00 0.00 2.52
2818 6676 5.501156 AGTCATATCACCAGGGTTTTCTTC 58.499 41.667 0.00 0.00 0.00 2.87
2819 6677 5.014123 AGTCATATCACCAGGGTTTTCTTCA 59.986 40.000 0.00 0.00 0.00 3.02
2820 6678 5.355350 GTCATATCACCAGGGTTTTCTTCAG 59.645 44.000 0.00 0.00 0.00 3.02
2821 6679 5.250543 TCATATCACCAGGGTTTTCTTCAGA 59.749 40.000 0.00 0.00 0.00 3.27
2822 6680 4.664688 ATCACCAGGGTTTTCTTCAGAT 57.335 40.909 0.00 0.00 0.00 2.90
2823 6681 4.453480 TCACCAGGGTTTTCTTCAGATT 57.547 40.909 0.00 0.00 0.00 2.40
2824 6682 4.144297 TCACCAGGGTTTTCTTCAGATTG 58.856 43.478 0.00 0.00 0.00 2.67
2825 6683 4.141274 TCACCAGGGTTTTCTTCAGATTGA 60.141 41.667 0.00 0.00 0.00 2.57
2826 6684 4.022849 CACCAGGGTTTTCTTCAGATTGAC 60.023 45.833 0.00 0.00 0.00 3.18
2827 6685 3.507622 CCAGGGTTTTCTTCAGATTGACC 59.492 47.826 0.00 0.00 0.00 4.02
2828 6686 3.189287 CAGGGTTTTCTTCAGATTGACCG 59.811 47.826 0.00 0.00 0.00 4.79
2829 6687 2.488153 GGGTTTTCTTCAGATTGACCGG 59.512 50.000 0.00 0.00 0.00 5.28
2830 6688 2.095212 GGTTTTCTTCAGATTGACCGGC 60.095 50.000 0.00 0.00 0.00 6.13
2831 6689 1.438651 TTTCTTCAGATTGACCGGCG 58.561 50.000 0.00 0.00 0.00 6.46
2832 6690 1.019278 TTCTTCAGATTGACCGGCGC 61.019 55.000 0.00 0.00 0.00 6.53
2833 6691 1.741401 CTTCAGATTGACCGGCGCA 60.741 57.895 10.83 0.00 0.00 6.09
2834 6692 1.078497 TTCAGATTGACCGGCGCAT 60.078 52.632 10.83 0.00 0.00 4.73
2835 6693 1.368345 TTCAGATTGACCGGCGCATG 61.368 55.000 10.83 0.76 0.00 4.06
2836 6694 3.204827 AGATTGACCGGCGCATGC 61.205 61.111 10.83 7.91 41.71 4.06
2847 6705 3.349088 GCGCATGCCATTGAATTGA 57.651 47.368 13.15 0.00 33.98 2.57
2848 6706 0.925466 GCGCATGCCATTGAATTGAC 59.075 50.000 13.15 0.00 33.98 3.18
2849 6707 1.563111 CGCATGCCATTGAATTGACC 58.437 50.000 13.15 0.00 0.00 4.02
2850 6708 1.803625 CGCATGCCATTGAATTGACCC 60.804 52.381 13.15 0.00 0.00 4.46
2851 6709 1.483415 GCATGCCATTGAATTGACCCT 59.517 47.619 6.36 0.00 0.00 4.34
2852 6710 2.740580 GCATGCCATTGAATTGACCCTG 60.741 50.000 6.36 0.00 0.00 4.45
2853 6711 2.307496 TGCCATTGAATTGACCCTGT 57.693 45.000 0.00 0.00 0.00 4.00
2854 6712 3.448093 TGCCATTGAATTGACCCTGTA 57.552 42.857 0.00 0.00 0.00 2.74
2855 6713 3.772387 TGCCATTGAATTGACCCTGTAA 58.228 40.909 0.00 0.00 0.00 2.41
2856 6714 4.155709 TGCCATTGAATTGACCCTGTAAA 58.844 39.130 0.00 0.00 0.00 2.01
2857 6715 4.590647 TGCCATTGAATTGACCCTGTAAAA 59.409 37.500 0.00 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 1.011968 TGAAATCCCGCGTCTTGACG 61.012 55.000 17.53 17.53 0.00 4.35
19 20 0.377203 GGAACATGAAATCCCGCGTC 59.623 55.000 4.92 0.00 0.00 5.19
20 21 1.029947 GGGAACATGAAATCCCGCGT 61.030 55.000 16.45 0.00 45.56 6.01
63 64 4.275443 GCTCTATTCTTCAGGCATTCCTTG 59.725 45.833 0.00 0.00 41.93 3.61
71 72 3.305064 CCTCGTAGCTCTATTCTTCAGGC 60.305 52.174 0.00 0.00 0.00 4.85
73 74 3.886505 ACCCTCGTAGCTCTATTCTTCAG 59.113 47.826 0.00 0.00 0.00 3.02
74 75 3.884091 GACCCTCGTAGCTCTATTCTTCA 59.116 47.826 0.00 0.00 0.00 3.02
90 91 1.446272 CAAGAAGCCGACGACCCTC 60.446 63.158 0.00 0.00 0.00 4.30
128 129 2.098117 CGGTTTGAAGATCTTGATGGCC 59.902 50.000 14.00 6.30 0.00 5.36
129 130 2.098117 CCGGTTTGAAGATCTTGATGGC 59.902 50.000 14.00 0.00 0.00 4.40
152 153 2.802816 GTTTAGTCCTAGCGCCATGATG 59.197 50.000 2.29 0.00 0.00 3.07
162 163 3.280295 TCGCCTCTGAGTTTAGTCCTAG 58.720 50.000 3.66 0.00 0.00 3.02
164 165 2.217510 TCGCCTCTGAGTTTAGTCCT 57.782 50.000 3.66 0.00 0.00 3.85
181 182 0.179145 ACCGTAATGTCCTCGCTTCG 60.179 55.000 0.00 0.00 0.00 3.79
240 241 3.181455 CGTCCCATCATAACCATGGAAGA 60.181 47.826 21.47 10.54 43.32 2.87
241 242 3.141398 CGTCCCATCATAACCATGGAAG 58.859 50.000 21.47 4.93 43.32 3.46
243 244 1.202758 GCGTCCCATCATAACCATGGA 60.203 52.381 21.47 0.00 43.32 3.41
245 246 1.965935 TGCGTCCCATCATAACCATG 58.034 50.000 0.00 0.00 0.00 3.66
246 247 2.727123 TTGCGTCCCATCATAACCAT 57.273 45.000 0.00 0.00 0.00 3.55
247 248 2.498644 TTTGCGTCCCATCATAACCA 57.501 45.000 0.00 0.00 0.00 3.67
248 249 3.214328 AGATTTGCGTCCCATCATAACC 58.786 45.455 0.00 0.00 0.00 2.85
259 260 6.257849 TGATTATGAAGGTGTAGATTTGCGTC 59.742 38.462 0.00 0.00 0.00 5.19
335 341 6.010850 GGGAAGAAAGGTGAAATAAGAACCT 58.989 40.000 0.00 0.00 46.40 3.50
342 348 3.328343 TCCGTGGGAAGAAAGGTGAAATA 59.672 43.478 0.00 0.00 0.00 1.40
361 367 2.892425 GCAGGCAAGACGGATCCG 60.892 66.667 32.20 32.20 46.03 4.18
362 368 1.522580 GAGCAGGCAAGACGGATCC 60.523 63.158 0.00 0.00 0.00 3.36
363 369 1.522580 GGAGCAGGCAAGACGGATC 60.523 63.158 0.00 0.00 0.00 3.36
364 370 2.586792 GGAGCAGGCAAGACGGAT 59.413 61.111 0.00 0.00 0.00 4.18
365 371 3.706373 GGGAGCAGGCAAGACGGA 61.706 66.667 0.00 0.00 0.00 4.69
366 372 3.672295 GAGGGAGCAGGCAAGACGG 62.672 68.421 0.00 0.00 0.00 4.79
367 373 2.125350 GAGGGAGCAGGCAAGACG 60.125 66.667 0.00 0.00 0.00 4.18
368 374 2.270527 GGAGGGAGCAGGCAAGAC 59.729 66.667 0.00 0.00 0.00 3.01
369 375 3.011517 GGGAGGGAGCAGGCAAGA 61.012 66.667 0.00 0.00 0.00 3.02
370 376 4.120755 GGGGAGGGAGCAGGCAAG 62.121 72.222 0.00 0.00 0.00 4.01
372 378 4.765970 ATGGGGAGGGAGCAGGCA 62.766 66.667 0.00 0.00 0.00 4.75
373 379 4.201122 CATGGGGAGGGAGCAGGC 62.201 72.222 0.00 0.00 0.00 4.85
374 380 4.201122 GCATGGGGAGGGAGCAGG 62.201 72.222 0.00 0.00 0.00 4.85
375 381 2.621517 GAAGCATGGGGAGGGAGCAG 62.622 65.000 0.00 0.00 0.00 4.24
376 382 2.614969 AAGCATGGGGAGGGAGCA 60.615 61.111 0.00 0.00 0.00 4.26
377 383 2.194326 GAAGCATGGGGAGGGAGC 59.806 66.667 0.00 0.00 0.00 4.70
378 384 1.358830 ATGGAAGCATGGGGAGGGAG 61.359 60.000 0.00 0.00 0.00 4.30
379 385 1.309013 ATGGAAGCATGGGGAGGGA 60.309 57.895 0.00 0.00 0.00 4.20
380 386 1.152368 GATGGAAGCATGGGGAGGG 59.848 63.158 0.00 0.00 0.00 4.30
381 387 1.152368 GGATGGAAGCATGGGGAGG 59.848 63.158 0.00 0.00 0.00 4.30
382 388 1.228063 CGGATGGAAGCATGGGGAG 60.228 63.158 0.00 0.00 0.00 4.30
383 389 2.000701 ACGGATGGAAGCATGGGGA 61.001 57.895 0.00 0.00 0.00 4.81
384 390 1.825191 CACGGATGGAAGCATGGGG 60.825 63.158 0.00 0.00 0.00 4.96
385 391 2.484062 GCACGGATGGAAGCATGGG 61.484 63.158 0.00 0.00 0.00 4.00
386 392 1.442526 GAGCACGGATGGAAGCATGG 61.443 60.000 0.00 0.00 0.00 3.66
387 393 1.442526 GGAGCACGGATGGAAGCATG 61.443 60.000 0.00 0.00 0.00 4.06
388 394 1.153086 GGAGCACGGATGGAAGCAT 60.153 57.895 0.00 0.00 0.00 3.79
389 395 2.268920 GGAGCACGGATGGAAGCA 59.731 61.111 0.00 0.00 0.00 3.91
390 396 2.514824 GGGAGCACGGATGGAAGC 60.515 66.667 0.00 0.00 0.00 3.86
391 397 1.450312 GTGGGAGCACGGATGGAAG 60.450 63.158 0.00 0.00 0.00 3.46
392 398 1.488705 AAGTGGGAGCACGGATGGAA 61.489 55.000 0.00 0.00 0.00 3.53
393 399 1.899437 GAAGTGGGAGCACGGATGGA 61.899 60.000 0.00 0.00 0.00 3.41
394 400 1.450312 GAAGTGGGAGCACGGATGG 60.450 63.158 0.00 0.00 0.00 3.51
395 401 0.107508 ATGAAGTGGGAGCACGGATG 60.108 55.000 0.00 0.00 0.00 3.51
396 402 0.620556 AATGAAGTGGGAGCACGGAT 59.379 50.000 0.00 0.00 0.00 4.18
397 403 0.036388 GAATGAAGTGGGAGCACGGA 60.036 55.000 0.00 0.00 0.00 4.69
398 404 0.036010 AGAATGAAGTGGGAGCACGG 60.036 55.000 0.00 0.00 0.00 4.94
399 405 2.672961 TAGAATGAAGTGGGAGCACG 57.327 50.000 0.00 0.00 0.00 5.34
400 406 3.209410 CCATAGAATGAAGTGGGAGCAC 58.791 50.000 0.00 0.00 0.00 4.40
401 407 2.421952 GCCATAGAATGAAGTGGGAGCA 60.422 50.000 0.00 0.00 32.35 4.26
402 408 2.158696 AGCCATAGAATGAAGTGGGAGC 60.159 50.000 0.00 0.00 32.35 4.70
403 409 3.118112 ACAGCCATAGAATGAAGTGGGAG 60.118 47.826 0.00 0.00 32.35 4.30
404 410 2.846206 ACAGCCATAGAATGAAGTGGGA 59.154 45.455 0.00 0.00 32.35 4.37
405 411 3.287867 ACAGCCATAGAATGAAGTGGG 57.712 47.619 0.00 0.00 32.35 4.61
406 412 5.649782 AAAACAGCCATAGAATGAAGTGG 57.350 39.130 0.00 0.00 34.84 4.00
432 438 9.462606 GTGATTAGATTAGGAAGGAAAAAGGAA 57.537 33.333 0.00 0.00 0.00 3.36
433 439 8.053355 GGTGATTAGATTAGGAAGGAAAAAGGA 58.947 37.037 0.00 0.00 0.00 3.36
434 440 7.285629 GGGTGATTAGATTAGGAAGGAAAAAGG 59.714 40.741 0.00 0.00 0.00 3.11
435 441 7.285629 GGGGTGATTAGATTAGGAAGGAAAAAG 59.714 40.741 0.00 0.00 0.00 2.27
436 442 7.123383 GGGGTGATTAGATTAGGAAGGAAAAA 58.877 38.462 0.00 0.00 0.00 1.94
437 443 6.354477 GGGGGTGATTAGATTAGGAAGGAAAA 60.354 42.308 0.00 0.00 0.00 2.29
438 444 5.133830 GGGGGTGATTAGATTAGGAAGGAAA 59.866 44.000 0.00 0.00 0.00 3.13
439 445 4.663592 GGGGGTGATTAGATTAGGAAGGAA 59.336 45.833 0.00 0.00 0.00 3.36
440 446 4.240323 GGGGGTGATTAGATTAGGAAGGA 58.760 47.826 0.00 0.00 0.00 3.36
441 447 4.642466 GGGGGTGATTAGATTAGGAAGG 57.358 50.000 0.00 0.00 0.00 3.46
461 467 1.470051 CCACCCCGTTAAAATCAGGG 58.530 55.000 0.00 0.00 43.88 4.45
462 468 1.470051 CCCACCCCGTTAAAATCAGG 58.530 55.000 0.00 0.00 0.00 3.86
463 469 0.815095 GCCCACCCCGTTAAAATCAG 59.185 55.000 0.00 0.00 0.00 2.90
464 470 0.612453 GGCCCACCCCGTTAAAATCA 60.612 55.000 0.00 0.00 0.00 2.57
465 471 2.195389 GGCCCACCCCGTTAAAATC 58.805 57.895 0.00 0.00 0.00 2.17
466 472 4.445832 GGCCCACCCCGTTAAAAT 57.554 55.556 0.00 0.00 0.00 1.82
476 482 2.219449 AAATAAGACCCGGGCCCACC 62.219 60.000 24.08 7.12 0.00 4.61
477 483 0.323999 AAAATAAGACCCGGGCCCAC 60.324 55.000 24.08 10.09 0.00 4.61
478 484 0.323908 CAAAATAAGACCCGGGCCCA 60.324 55.000 24.08 3.24 0.00 5.36
479 485 0.323999 ACAAAATAAGACCCGGGCCC 60.324 55.000 24.08 13.57 0.00 5.80
480 486 1.475280 GAACAAAATAAGACCCGGGCC 59.525 52.381 24.08 10.70 0.00 5.80
481 487 1.475280 GGAACAAAATAAGACCCGGGC 59.525 52.381 24.08 14.21 0.00 6.13
482 488 2.797786 TGGAACAAAATAAGACCCGGG 58.202 47.619 22.25 22.25 31.92 5.73
493 499 9.414163 AAGTGGCTTGACTTGATTGGAACAAAA 62.414 37.037 0.00 0.00 38.02 2.44
494 500 8.032411 AAGTGGCTTGACTTGATTGGAACAAA 62.032 38.462 0.00 0.00 38.02 2.83
495 501 6.620139 AAGTGGCTTGACTTGATTGGAACAA 61.620 40.000 0.00 0.00 38.02 2.83
496 502 2.622942 GTGGCTTGACTTGATTGGAACA 59.377 45.455 0.00 0.00 0.00 3.18
497 503 2.887152 AGTGGCTTGACTTGATTGGAAC 59.113 45.455 0.00 0.00 0.00 3.62
498 504 3.228188 AGTGGCTTGACTTGATTGGAA 57.772 42.857 0.00 0.00 0.00 3.53
499 505 2.957402 AGTGGCTTGACTTGATTGGA 57.043 45.000 0.00 0.00 0.00 3.53
500 506 3.120199 CGTAAGTGGCTTGACTTGATTGG 60.120 47.826 0.00 0.00 36.80 3.16
501 507 3.667960 GCGTAAGTGGCTTGACTTGATTG 60.668 47.826 0.00 0.00 36.80 2.67
502 508 2.484264 GCGTAAGTGGCTTGACTTGATT 59.516 45.455 0.00 0.00 36.80 2.57
503 509 2.076863 GCGTAAGTGGCTTGACTTGAT 58.923 47.619 0.00 0.00 36.80 2.57
504 510 1.508632 GCGTAAGTGGCTTGACTTGA 58.491 50.000 0.00 0.00 36.80 3.02
505 511 0.163788 CGCGTAAGTGGCTTGACTTG 59.836 55.000 0.00 0.00 46.11 3.16
506 512 2.528797 CGCGTAAGTGGCTTGACTT 58.471 52.632 0.00 0.00 46.11 3.01
507 513 4.261888 CGCGTAAGTGGCTTGACT 57.738 55.556 0.00 0.00 46.11 3.41
516 522 4.430765 CCGTGCTCCCGCGTAAGT 62.431 66.667 4.92 0.00 43.11 2.24
517 523 3.426117 ATCCGTGCTCCCGCGTAAG 62.426 63.158 4.92 2.56 43.11 2.34
518 524 3.454573 ATCCGTGCTCCCGCGTAA 61.455 61.111 4.92 0.00 43.11 3.18
519 525 4.201679 CATCCGTGCTCCCGCGTA 62.202 66.667 4.92 0.00 43.11 4.42
523 529 4.873129 CGTCCATCCGTGCTCCCG 62.873 72.222 0.00 0.00 0.00 5.14
525 531 4.451150 TGCGTCCATCCGTGCTCC 62.451 66.667 0.00 0.00 0.00 4.70
526 532 3.188786 GTGCGTCCATCCGTGCTC 61.189 66.667 0.00 0.00 0.00 4.26
551 557 3.482783 GACGAGACTTGCCTGCGC 61.483 66.667 0.00 0.00 0.00 6.09
552 558 2.811317 GGACGAGACTTGCCTGCG 60.811 66.667 0.00 0.00 0.00 5.18
553 559 1.446966 GAGGACGAGACTTGCCTGC 60.447 63.158 9.62 0.00 0.00 4.85
554 560 0.605589 AAGAGGACGAGACTTGCCTG 59.394 55.000 9.62 0.00 0.00 4.85
555 561 0.892063 GAAGAGGACGAGACTTGCCT 59.108 55.000 5.62 5.62 0.00 4.75
556 562 0.108567 GGAAGAGGACGAGACTTGCC 60.109 60.000 0.00 0.00 0.00 4.52
557 563 0.108567 GGGAAGAGGACGAGACTTGC 60.109 60.000 0.00 0.00 0.00 4.01
558 564 1.067495 GTGGGAAGAGGACGAGACTTG 60.067 57.143 0.00 0.00 0.00 3.16
559 565 1.258676 GTGGGAAGAGGACGAGACTT 58.741 55.000 0.00 0.00 0.00 3.01
560 566 0.612453 GGTGGGAAGAGGACGAGACT 60.612 60.000 0.00 0.00 0.00 3.24
561 567 0.898789 TGGTGGGAAGAGGACGAGAC 60.899 60.000 0.00 0.00 0.00 3.36
562 568 0.898789 GTGGTGGGAAGAGGACGAGA 60.899 60.000 0.00 0.00 0.00 4.04
563 569 1.592223 GTGGTGGGAAGAGGACGAG 59.408 63.158 0.00 0.00 0.00 4.18
564 570 1.911766 GGTGGTGGGAAGAGGACGA 60.912 63.158 0.00 0.00 0.00 4.20
565 571 2.663196 GGTGGTGGGAAGAGGACG 59.337 66.667 0.00 0.00 0.00 4.79
566 572 2.603652 GGGGTGGTGGGAAGAGGAC 61.604 68.421 0.00 0.00 0.00 3.85
567 573 2.204090 GGGGTGGTGGGAAGAGGA 60.204 66.667 0.00 0.00 0.00 3.71
568 574 1.852626 AAGGGGTGGTGGGAAGAGG 60.853 63.158 0.00 0.00 0.00 3.69
569 575 1.685820 GAAGGGGTGGTGGGAAGAG 59.314 63.158 0.00 0.00 0.00 2.85
570 576 2.221299 CGAAGGGGTGGTGGGAAGA 61.221 63.158 0.00 0.00 0.00 2.87
571 577 2.351276 CGAAGGGGTGGTGGGAAG 59.649 66.667 0.00 0.00 0.00 3.46
572 578 2.448931 ACGAAGGGGTGGTGGGAA 60.449 61.111 0.00 0.00 0.00 3.97
573 579 2.096707 TAGACGAAGGGGTGGTGGGA 62.097 60.000 0.00 0.00 0.00 4.37
748 755 6.744550 ATAGTACGTTAGCTTGCGATTTAC 57.255 37.500 14.97 8.14 0.00 2.01
771 778 8.780846 ACGATTGCAACCGGATATAAATATTA 57.219 30.769 19.26 0.00 0.00 0.98
784 791 2.469516 GCCCCTACGATTGCAACCG 61.470 63.158 12.78 12.78 0.00 4.44
785 792 0.751643 ATGCCCCTACGATTGCAACC 60.752 55.000 0.00 0.00 37.27 3.77
794 801 4.261031 GCAAACTATAACAATGCCCCTACG 60.261 45.833 0.00 0.00 0.00 3.51
795 802 4.887655 AGCAAACTATAACAATGCCCCTAC 59.112 41.667 0.00 0.00 37.73 3.18
796 803 5.124036 AGCAAACTATAACAATGCCCCTA 57.876 39.130 0.00 0.00 37.73 3.53
797 804 3.981212 AGCAAACTATAACAATGCCCCT 58.019 40.909 0.00 0.00 37.73 4.79
798 805 5.845391 TTAGCAAACTATAACAATGCCCC 57.155 39.130 0.00 0.00 37.73 5.80
809 816 8.357402 CGGGCCTATTTATTTTTAGCAAACTAT 58.643 33.333 0.84 0.00 0.00 2.12
847 855 2.092699 GGGAGGGAAAAGGTCATCTCAG 60.093 54.545 0.00 0.00 32.69 3.35
858 866 1.074248 GGACAAGCGGGAGGGAAAA 59.926 57.895 0.00 0.00 0.00 2.29
862 870 0.960861 GAAAAGGACAAGCGGGAGGG 60.961 60.000 0.00 0.00 0.00 4.30
863 871 0.036875 AGAAAAGGACAAGCGGGAGG 59.963 55.000 0.00 0.00 0.00 4.30
864 872 1.443802 GAGAAAAGGACAAGCGGGAG 58.556 55.000 0.00 0.00 0.00 4.30
865 873 0.036306 GGAGAAAAGGACAAGCGGGA 59.964 55.000 0.00 0.00 0.00 5.14
866 874 0.036875 AGGAGAAAAGGACAAGCGGG 59.963 55.000 0.00 0.00 0.00 6.13
867 875 1.270839 TGAGGAGAAAAGGACAAGCGG 60.271 52.381 0.00 0.00 0.00 5.52
868 876 1.801178 GTGAGGAGAAAAGGACAAGCG 59.199 52.381 0.00 0.00 0.00 4.68
869 877 1.801178 CGTGAGGAGAAAAGGACAAGC 59.199 52.381 0.00 0.00 0.00 4.01
870 878 1.801178 GCGTGAGGAGAAAAGGACAAG 59.199 52.381 0.00 0.00 0.00 3.16
871 879 1.872237 CGCGTGAGGAGAAAAGGACAA 60.872 52.381 0.00 0.00 0.00 3.18
872 880 0.319555 CGCGTGAGGAGAAAAGGACA 60.320 55.000 0.00 0.00 0.00 4.02
873 881 0.319641 ACGCGTGAGGAGAAAAGGAC 60.320 55.000 12.93 0.00 0.00 3.85
874 882 0.038526 GACGCGTGAGGAGAAAAGGA 60.039 55.000 20.70 0.00 0.00 3.36
875 883 0.038159 AGACGCGTGAGGAGAAAAGG 60.038 55.000 20.70 0.00 0.00 3.11
1611 1640 2.357517 CTGAAGCTCACGCCGGTT 60.358 61.111 1.90 0.00 36.60 4.44
1833 1871 1.153046 CCACCACCACAAGAACGGT 60.153 57.895 0.00 0.00 35.27 4.83
1888 1926 2.349060 CGTTGACACATTGGTAACCACG 60.349 50.000 0.00 0.00 30.78 4.94
1918 1956 1.672854 ATGCTCGGCCGCTGTTACTA 61.673 55.000 23.51 0.00 0.00 1.82
2138 5919 8.932791 CGTGTCTTGTAATAATCCTTTTGTAGT 58.067 33.333 0.00 0.00 0.00 2.73
2139 5920 9.146984 TCGTGTCTTGTAATAATCCTTTTGTAG 57.853 33.333 0.00 0.00 0.00 2.74
2140 5921 9.661563 ATCGTGTCTTGTAATAATCCTTTTGTA 57.338 29.630 0.00 0.00 0.00 2.41
2159 5940 6.252869 CCACAATGTAACTACTGTATCGTGTC 59.747 42.308 0.00 0.00 0.00 3.67
2164 5945 9.865321 TTACTTCCACAATGTAACTACTGTATC 57.135 33.333 0.00 0.00 0.00 2.24
2170 5951 9.620660 CCAAAATTACTTCCACAATGTAACTAC 57.379 33.333 0.00 0.00 0.00 2.73
2274 6111 5.412594 TCACTTCCACAAATAACATGAGCTC 59.587 40.000 6.82 6.82 0.00 4.09
2276 6113 5.627499 TCACTTCCACAAATAACATGAGC 57.373 39.130 0.00 0.00 0.00 4.26
2391 6245 7.001099 TCCTTAGTTGGTAAGTAAACCTGAG 57.999 40.000 0.00 0.00 40.44 3.35
2393 6247 7.881232 TGATTCCTTAGTTGGTAAGTAAACCTG 59.119 37.037 0.00 0.00 40.44 4.00
2394 6248 7.981142 TGATTCCTTAGTTGGTAAGTAAACCT 58.019 34.615 0.00 0.00 40.44 3.50
2395 6249 8.803397 ATGATTCCTTAGTTGGTAAGTAAACC 57.197 34.615 0.00 0.00 37.06 3.27
2463 6321 7.364627 TCCTTTCAAATTCCTATGGGATTCAT 58.635 34.615 0.00 0.00 41.87 2.57
2495 6353 5.130145 TGAAAAATCCTTCTTCCAGCCAAAA 59.870 36.000 0.00 0.00 0.00 2.44
2496 6354 4.653341 TGAAAAATCCTTCTTCCAGCCAAA 59.347 37.500 0.00 0.00 0.00 3.28
2497 6355 4.222336 TGAAAAATCCTTCTTCCAGCCAA 58.778 39.130 0.00 0.00 0.00 4.52
2498 6356 3.843422 TGAAAAATCCTTCTTCCAGCCA 58.157 40.909 0.00 0.00 0.00 4.75
2539 6397 8.477419 AAATTATGAGGTTGGACTCTTTTGAA 57.523 30.769 0.00 0.00 38.32 2.69
2540 6398 8.477419 AAAATTATGAGGTTGGACTCTTTTGA 57.523 30.769 0.00 0.00 38.32 2.69
2575 6433 4.076394 GGGGCTACACTATTGTCAAAACA 58.924 43.478 0.00 0.00 37.15 2.83
2576 6434 4.332828 AGGGGCTACACTATTGTCAAAAC 58.667 43.478 0.00 0.00 37.15 2.43
2577 6435 4.042311 TGAGGGGCTACACTATTGTCAAAA 59.958 41.667 0.00 0.00 37.15 2.44
2578 6436 3.585289 TGAGGGGCTACACTATTGTCAAA 59.415 43.478 0.00 0.00 37.15 2.69
2579 6437 3.178046 TGAGGGGCTACACTATTGTCAA 58.822 45.455 0.00 0.00 37.15 3.18
2580 6438 2.766263 CTGAGGGGCTACACTATTGTCA 59.234 50.000 0.00 0.00 37.15 3.58
2581 6439 3.031736 TCTGAGGGGCTACACTATTGTC 58.968 50.000 0.00 0.00 37.15 3.18
2582 6440 3.116096 TCTGAGGGGCTACACTATTGT 57.884 47.619 0.00 0.00 40.02 2.71
2583 6441 4.696479 ATTCTGAGGGGCTACACTATTG 57.304 45.455 0.00 0.00 0.00 1.90
2584 6442 7.249715 ACTATATTCTGAGGGGCTACACTATT 58.750 38.462 0.00 0.00 0.00 1.73
2585 6443 6.806217 ACTATATTCTGAGGGGCTACACTAT 58.194 40.000 0.00 0.00 0.00 2.12
2586 6444 6.215515 ACTATATTCTGAGGGGCTACACTA 57.784 41.667 0.00 0.00 0.00 2.74
2587 6445 5.081315 ACTATATTCTGAGGGGCTACACT 57.919 43.478 0.00 0.00 0.00 3.55
2588 6446 6.011481 AGTACTATATTCTGAGGGGCTACAC 58.989 44.000 0.00 0.00 0.00 2.90
2589 6447 6.215515 AGTACTATATTCTGAGGGGCTACA 57.784 41.667 0.00 0.00 0.00 2.74
2590 6448 6.494146 ACAAGTACTATATTCTGAGGGGCTAC 59.506 42.308 0.00 0.00 0.00 3.58
2591 6449 6.621394 ACAAGTACTATATTCTGAGGGGCTA 58.379 40.000 0.00 0.00 0.00 3.93
2592 6450 5.468658 ACAAGTACTATATTCTGAGGGGCT 58.531 41.667 0.00 0.00 0.00 5.19
2593 6451 5.540719 AGACAAGTACTATATTCTGAGGGGC 59.459 44.000 0.00 0.00 0.00 5.80
2594 6452 7.604657 AAGACAAGTACTATATTCTGAGGGG 57.395 40.000 0.00 0.00 0.00 4.79
2595 6453 9.892130 AAAAAGACAAGTACTATATTCTGAGGG 57.108 33.333 0.00 0.00 0.00 4.30
2618 6476 8.273780 AGTTGTTTCATTGCACCAAATAAAAA 57.726 26.923 0.00 0.00 0.00 1.94
2619 6477 7.856145 AGTTGTTTCATTGCACCAAATAAAA 57.144 28.000 0.00 0.00 0.00 1.52
2620 6478 7.856145 AAGTTGTTTCATTGCACCAAATAAA 57.144 28.000 0.00 0.00 0.00 1.40
2621 6479 7.856145 AAAGTTGTTTCATTGCACCAAATAA 57.144 28.000 0.00 0.00 0.00 1.40
2622 6480 7.335422 ACAAAAGTTGTTTCATTGCACCAAATA 59.665 29.630 0.00 0.00 42.22 1.40
2623 6481 6.150809 ACAAAAGTTGTTTCATTGCACCAAAT 59.849 30.769 0.00 0.00 42.22 2.32
2624 6482 5.471456 ACAAAAGTTGTTTCATTGCACCAAA 59.529 32.000 0.00 0.00 42.22 3.28
2625 6483 4.999950 ACAAAAGTTGTTTCATTGCACCAA 59.000 33.333 0.00 0.00 42.22 3.67
2626 6484 4.573900 ACAAAAGTTGTTTCATTGCACCA 58.426 34.783 0.00 0.00 42.22 4.17
2654 6512 9.689501 TCTAACCTCCTTTTAAGAAGACAAAAA 57.310 29.630 0.00 0.00 0.00 1.94
2655 6513 9.338622 CTCTAACCTCCTTTTAAGAAGACAAAA 57.661 33.333 0.00 0.00 0.00 2.44
2656 6514 7.444487 GCTCTAACCTCCTTTTAAGAAGACAAA 59.556 37.037 0.00 0.00 0.00 2.83
2657 6515 6.935208 GCTCTAACCTCCTTTTAAGAAGACAA 59.065 38.462 0.00 0.00 0.00 3.18
2658 6516 6.465084 GCTCTAACCTCCTTTTAAGAAGACA 58.535 40.000 0.00 0.00 0.00 3.41
2659 6517 5.875910 GGCTCTAACCTCCTTTTAAGAAGAC 59.124 44.000 0.00 0.00 0.00 3.01
2660 6518 5.045797 GGGCTCTAACCTCCTTTTAAGAAGA 60.046 44.000 0.00 0.00 0.00 2.87
2661 6519 5.186942 GGGCTCTAACCTCCTTTTAAGAAG 58.813 45.833 0.00 0.00 0.00 2.85
2662 6520 4.018688 GGGGCTCTAACCTCCTTTTAAGAA 60.019 45.833 0.00 0.00 0.00 2.52
2663 6521 3.522343 GGGGCTCTAACCTCCTTTTAAGA 59.478 47.826 0.00 0.00 0.00 2.10
2664 6522 3.681874 CGGGGCTCTAACCTCCTTTTAAG 60.682 52.174 0.00 0.00 0.00 1.85
2665 6523 2.237893 CGGGGCTCTAACCTCCTTTTAA 59.762 50.000 0.00 0.00 0.00 1.52
2666 6524 1.835531 CGGGGCTCTAACCTCCTTTTA 59.164 52.381 0.00 0.00 0.00 1.52
2667 6525 0.618981 CGGGGCTCTAACCTCCTTTT 59.381 55.000 0.00 0.00 0.00 2.27
2668 6526 1.272554 CCGGGGCTCTAACCTCCTTT 61.273 60.000 0.00 0.00 0.00 3.11
2669 6527 1.689582 CCGGGGCTCTAACCTCCTT 60.690 63.158 0.00 0.00 0.00 3.36
2670 6528 2.041819 CCGGGGCTCTAACCTCCT 60.042 66.667 0.00 0.00 0.00 3.69
2671 6529 3.862991 GCCGGGGCTCTAACCTCC 61.863 72.222 2.18 0.00 38.26 4.30
2672 6530 3.862991 GGCCGGGGCTCTAACCTC 61.863 72.222 14.22 0.00 41.60 3.85
2673 6531 4.416601 AGGCCGGGGCTCTAACCT 62.417 66.667 18.71 0.00 41.60 3.50
2682 6540 3.426309 AATGATGCAGAGGCCGGGG 62.426 63.158 2.18 0.00 40.13 5.73
2683 6541 2.191513 CAATGATGCAGAGGCCGGG 61.192 63.158 2.18 0.00 40.13 5.73
2684 6542 3.428797 CAATGATGCAGAGGCCGG 58.571 61.111 0.00 0.00 40.13 6.13
2694 6552 4.329256 CAGGCTGAGTATATCGCAATGATG 59.671 45.833 9.42 0.00 37.99 3.07
2695 6553 4.502016 CAGGCTGAGTATATCGCAATGAT 58.498 43.478 9.42 0.00 41.30 2.45
2696 6554 3.306294 CCAGGCTGAGTATATCGCAATGA 60.306 47.826 17.94 0.00 31.66 2.57
2697 6555 2.998670 CCAGGCTGAGTATATCGCAATG 59.001 50.000 17.94 0.00 31.66 2.82
2698 6556 2.613977 GCCAGGCTGAGTATATCGCAAT 60.614 50.000 17.94 0.00 31.66 3.56
2699 6557 1.270305 GCCAGGCTGAGTATATCGCAA 60.270 52.381 17.94 0.00 31.66 4.85
2700 6558 0.318441 GCCAGGCTGAGTATATCGCA 59.682 55.000 17.94 0.00 31.66 5.10
2701 6559 0.605589 AGCCAGGCTGAGTATATCGC 59.394 55.000 15.24 8.08 37.57 4.58
2702 6560 2.611473 CCAAGCCAGGCTGAGTATATCG 60.611 54.545 17.05 0.00 39.62 2.92
2703 6561 3.051081 CCAAGCCAGGCTGAGTATATC 57.949 52.381 17.05 0.00 39.62 1.63
2718 6576 1.453155 TTTTGATCTCGAGGCCAAGC 58.547 50.000 13.56 0.00 0.00 4.01
2719 6577 2.159653 CGTTTTTGATCTCGAGGCCAAG 60.160 50.000 13.56 0.00 0.00 3.61
2720 6578 1.804151 CGTTTTTGATCTCGAGGCCAA 59.196 47.619 13.56 13.67 0.00 4.52
2721 6579 1.270625 ACGTTTTTGATCTCGAGGCCA 60.271 47.619 13.56 8.06 0.00 5.36
2722 6580 1.393883 GACGTTTTTGATCTCGAGGCC 59.606 52.381 13.56 0.00 0.00 5.19
2723 6581 2.066262 TGACGTTTTTGATCTCGAGGC 58.934 47.619 13.56 5.92 0.00 4.70
2724 6582 3.421826 CGTTGACGTTTTTGATCTCGAGG 60.422 47.826 13.56 0.00 34.11 4.63
2725 6583 3.424198 TCGTTGACGTTTTTGATCTCGAG 59.576 43.478 5.93 5.93 40.80 4.04
2726 6584 3.373849 TCGTTGACGTTTTTGATCTCGA 58.626 40.909 3.25 0.00 40.80 4.04
2727 6585 3.181774 ACTCGTTGACGTTTTTGATCTCG 59.818 43.478 3.25 0.00 40.80 4.04
2728 6586 4.710528 ACTCGTTGACGTTTTTGATCTC 57.289 40.909 3.25 0.00 40.80 2.75
2729 6587 4.785341 GCAACTCGTTGACGTTTTTGATCT 60.785 41.667 13.57 0.00 42.93 2.75
2730 6588 3.417645 GCAACTCGTTGACGTTTTTGATC 59.582 43.478 13.57 0.00 42.93 2.92
2731 6589 3.181505 TGCAACTCGTTGACGTTTTTGAT 60.182 39.130 13.57 0.00 42.93 2.57
2732 6590 2.159824 TGCAACTCGTTGACGTTTTTGA 59.840 40.909 13.57 0.00 42.93 2.69
2733 6591 2.510874 TGCAACTCGTTGACGTTTTTG 58.489 42.857 13.57 6.75 42.93 2.44
2734 6592 2.904011 TGCAACTCGTTGACGTTTTT 57.096 40.000 13.57 0.00 42.93 1.94
2735 6593 4.742438 ATATGCAACTCGTTGACGTTTT 57.258 36.364 13.57 0.00 42.93 2.43
2736 6594 4.665645 CGAATATGCAACTCGTTGACGTTT 60.666 41.667 13.57 2.00 42.93 3.60
2737 6595 3.181534 CGAATATGCAACTCGTTGACGTT 60.182 43.478 13.57 2.74 42.93 3.99
2738 6596 2.344441 CGAATATGCAACTCGTTGACGT 59.656 45.455 13.57 8.52 42.93 4.34
2739 6597 2.344441 ACGAATATGCAACTCGTTGACG 59.656 45.455 13.57 9.87 42.86 4.35
2740 6598 3.991605 ACGAATATGCAACTCGTTGAC 57.008 42.857 13.57 5.79 42.86 3.18
2765 6623 8.814931 CCAATATAAATGCAATAATGGGAGGAA 58.185 33.333 0.00 0.00 29.62 3.36
2766 6624 7.093377 GCCAATATAAATGCAATAATGGGAGGA 60.093 37.037 11.31 0.00 32.61 3.71
2767 6625 7.043565 GCCAATATAAATGCAATAATGGGAGG 58.956 38.462 11.31 0.59 32.61 4.30
2768 6626 7.762615 CAGCCAATATAAATGCAATAATGGGAG 59.237 37.037 11.31 0.00 32.61 4.30
2769 6627 7.454066 TCAGCCAATATAAATGCAATAATGGGA 59.546 33.333 11.31 1.46 32.61 4.37
2770 6628 7.613585 TCAGCCAATATAAATGCAATAATGGG 58.386 34.615 11.31 1.49 32.61 4.00
2771 6629 8.308931 ACTCAGCCAATATAAATGCAATAATGG 58.691 33.333 6.61 6.61 34.34 3.16
2772 6630 9.350357 GACTCAGCCAATATAAATGCAATAATG 57.650 33.333 0.00 0.00 0.00 1.90
2773 6631 9.081204 TGACTCAGCCAATATAAATGCAATAAT 57.919 29.630 0.00 0.00 0.00 1.28
2774 6632 8.462589 TGACTCAGCCAATATAAATGCAATAA 57.537 30.769 0.00 0.00 0.00 1.40
2775 6633 8.640063 ATGACTCAGCCAATATAAATGCAATA 57.360 30.769 0.00 0.00 0.00 1.90
2776 6634 6.964807 TGACTCAGCCAATATAAATGCAAT 57.035 33.333 0.00 0.00 0.00 3.56
2777 6635 6.964807 ATGACTCAGCCAATATAAATGCAA 57.035 33.333 0.00 0.00 0.00 4.08
2778 6636 7.884354 TGATATGACTCAGCCAATATAAATGCA 59.116 33.333 0.00 0.00 0.00 3.96
2779 6637 8.180267 GTGATATGACTCAGCCAATATAAATGC 58.820 37.037 0.00 0.00 0.00 3.56
2780 6638 8.671921 GGTGATATGACTCAGCCAATATAAATG 58.328 37.037 0.00 0.00 37.62 2.32
2781 6639 8.385491 TGGTGATATGACTCAGCCAATATAAAT 58.615 33.333 0.00 0.00 41.78 1.40
2782 6640 7.744733 TGGTGATATGACTCAGCCAATATAAA 58.255 34.615 0.00 0.00 41.78 1.40
2783 6641 7.315066 TGGTGATATGACTCAGCCAATATAA 57.685 36.000 0.00 0.00 41.78 0.98
2784 6642 6.070596 CCTGGTGATATGACTCAGCCAATATA 60.071 42.308 5.63 0.00 41.78 0.86
2785 6643 5.280368 CCTGGTGATATGACTCAGCCAATAT 60.280 44.000 5.63 0.00 41.78 1.28
2786 6644 4.040829 CCTGGTGATATGACTCAGCCAATA 59.959 45.833 5.63 0.00 41.78 1.90
2787 6645 3.181447 CCTGGTGATATGACTCAGCCAAT 60.181 47.826 5.63 0.00 41.78 3.16
2788 6646 2.171237 CCTGGTGATATGACTCAGCCAA 59.829 50.000 5.63 0.00 41.78 4.52
2789 6647 1.764723 CCTGGTGATATGACTCAGCCA 59.235 52.381 5.63 0.00 41.78 4.75
2790 6648 1.071385 CCCTGGTGATATGACTCAGCC 59.929 57.143 5.63 0.00 41.78 4.85
2791 6649 1.765314 ACCCTGGTGATATGACTCAGC 59.235 52.381 5.63 0.00 42.58 4.26
2792 6650 4.494091 AAACCCTGGTGATATGACTCAG 57.506 45.455 0.00 4.56 0.00 3.35
2793 6651 4.536090 AGAAAACCCTGGTGATATGACTCA 59.464 41.667 0.00 0.00 0.00 3.41
2794 6652 5.104259 AGAAAACCCTGGTGATATGACTC 57.896 43.478 0.00 0.00 0.00 3.36
2795 6653 5.014123 TGAAGAAAACCCTGGTGATATGACT 59.986 40.000 0.00 0.00 0.00 3.41
2796 6654 5.253330 TGAAGAAAACCCTGGTGATATGAC 58.747 41.667 0.00 0.00 0.00 3.06
2797 6655 5.250543 TCTGAAGAAAACCCTGGTGATATGA 59.749 40.000 0.00 0.00 0.00 2.15
2798 6656 5.500234 TCTGAAGAAAACCCTGGTGATATG 58.500 41.667 0.00 0.00 0.00 1.78
2799 6657 5.779241 TCTGAAGAAAACCCTGGTGATAT 57.221 39.130 0.00 0.00 0.00 1.63
2800 6658 5.779241 ATCTGAAGAAAACCCTGGTGATA 57.221 39.130 0.00 0.00 0.00 2.15
2801 6659 4.664688 ATCTGAAGAAAACCCTGGTGAT 57.335 40.909 0.00 0.00 0.00 3.06
2802 6660 4.141274 TCAATCTGAAGAAAACCCTGGTGA 60.141 41.667 0.00 0.00 0.00 4.02
2803 6661 4.022849 GTCAATCTGAAGAAAACCCTGGTG 60.023 45.833 0.00 0.00 0.00 4.17
2804 6662 4.145052 GTCAATCTGAAGAAAACCCTGGT 58.855 43.478 0.00 0.00 0.00 4.00
2805 6663 3.507622 GGTCAATCTGAAGAAAACCCTGG 59.492 47.826 0.00 0.00 0.00 4.45
2806 6664 3.189287 CGGTCAATCTGAAGAAAACCCTG 59.811 47.826 4.48 0.00 0.00 4.45
2807 6665 3.412386 CGGTCAATCTGAAGAAAACCCT 58.588 45.455 4.48 0.00 0.00 4.34
2808 6666 2.488153 CCGGTCAATCTGAAGAAAACCC 59.512 50.000 0.00 0.00 0.00 4.11
2809 6667 2.095212 GCCGGTCAATCTGAAGAAAACC 60.095 50.000 1.90 0.00 0.00 3.27
2810 6668 2.412847 CGCCGGTCAATCTGAAGAAAAC 60.413 50.000 1.90 0.00 0.00 2.43
2811 6669 1.804151 CGCCGGTCAATCTGAAGAAAA 59.196 47.619 1.90 0.00 0.00 2.29
2812 6670 1.438651 CGCCGGTCAATCTGAAGAAA 58.561 50.000 1.90 0.00 0.00 2.52
2813 6671 1.019278 GCGCCGGTCAATCTGAAGAA 61.019 55.000 1.90 0.00 0.00 2.52
2814 6672 1.447838 GCGCCGGTCAATCTGAAGA 60.448 57.895 1.90 0.00 0.00 2.87
2815 6673 1.091771 ATGCGCCGGTCAATCTGAAG 61.092 55.000 4.18 0.00 0.00 3.02
2816 6674 1.078497 ATGCGCCGGTCAATCTGAA 60.078 52.632 4.18 0.00 0.00 3.02
2817 6675 1.815003 CATGCGCCGGTCAATCTGA 60.815 57.895 4.18 0.00 0.00 3.27
2818 6676 2.711311 CATGCGCCGGTCAATCTG 59.289 61.111 4.18 0.00 0.00 2.90
2819 6677 3.204827 GCATGCGCCGGTCAATCT 61.205 61.111 4.18 0.00 0.00 2.40
2829 6687 0.925466 GTCAATTCAATGGCATGCGC 59.075 50.000 12.44 0.00 37.44 6.09
2830 6688 1.563111 GGTCAATTCAATGGCATGCG 58.437 50.000 12.44 0.00 0.00 4.73
2831 6689 1.483415 AGGGTCAATTCAATGGCATGC 59.517 47.619 9.90 9.90 0.00 4.06
2832 6690 2.498481 ACAGGGTCAATTCAATGGCATG 59.502 45.455 0.00 0.00 0.00 4.06
2833 6691 2.823959 ACAGGGTCAATTCAATGGCAT 58.176 42.857 0.00 0.00 0.00 4.40
2834 6692 2.307496 ACAGGGTCAATTCAATGGCA 57.693 45.000 0.00 0.00 0.00 4.92
2835 6693 4.799564 TTTACAGGGTCAATTCAATGGC 57.200 40.909 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.