Multiple sequence alignment - TraesCS5D01G150000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G150000 chr5D 100.000 3977 0 0 1 3977 238713733 238709757 0.000000e+00 7345.0
1 TraesCS5D01G150000 chr5D 90.132 152 13 2 1000 1150 517840473 517840623 3.140000e-46 196.0
2 TraesCS5D01G150000 chr5D 89.062 128 14 0 2110 2237 517841771 517841898 4.110000e-35 159.0
3 TraesCS5D01G150000 chr5A 90.510 3688 218 56 104 3734 315493867 315497479 0.000000e+00 4750.0
4 TraesCS5D01G150000 chr5A 90.789 152 12 2 1000 1150 645261079 645261229 6.740000e-48 202.0
5 TraesCS5D01G150000 chr5A 89.062 128 14 0 2110 2237 645262470 645262597 4.110000e-35 159.0
6 TraesCS5D01G150000 chr5B 91.838 2965 136 33 631 3550 266003800 266006703 0.000000e+00 4037.0
7 TraesCS5D01G150000 chr5B 87.759 482 55 4 104 582 266002058 266002538 9.650000e-156 560.0
8 TraesCS5D01G150000 chr5B 89.474 152 14 2 1000 1150 650546201 650546351 1.460000e-44 191.0
9 TraesCS5D01G150000 chr5B 89.062 128 14 0 2110 2237 650547709 650547836 4.110000e-35 159.0
10 TraesCS5D01G150000 chr5B 80.503 159 30 1 395 553 106814994 106814837 1.940000e-23 121.0
11 TraesCS5D01G150000 chr2D 91.083 157 10 2 2991 3146 259745617 259745770 4.030000e-50 209.0
12 TraesCS5D01G150000 chr2D 88.000 150 18 0 3741 3890 336511134 336511283 1.140000e-40 178.0
13 TraesCS5D01G150000 chr2D 88.095 126 15 0 2112 2237 277680333 277680458 2.480000e-32 150.0
14 TraesCS5D01G150000 chr3D 88.462 156 16 2 3740 3894 128214006 128214160 1.890000e-43 187.0
15 TraesCS5D01G150000 chr3D 86.250 80 11 0 1869 1948 443259444 443259523 1.970000e-13 87.9
16 TraesCS5D01G150000 chr2B 88.462 156 17 1 3740 3894 621055494 621055339 1.890000e-43 187.0
17 TraesCS5D01G150000 chr2B 86.164 159 20 2 3736 3894 590855791 590855635 1.900000e-38 171.0
18 TraesCS5D01G150000 chr2A 88.125 160 15 4 3736 3892 648325407 648325249 1.890000e-43 187.0
19 TraesCS5D01G150000 chr2A 88.095 126 15 0 2112 2237 293936390 293936265 2.480000e-32 150.0
20 TraesCS5D01G150000 chr2A 75.897 195 39 6 390 581 723865679 723865868 4.230000e-15 93.5
21 TraesCS5D01G150000 chr4D 88.742 151 16 1 3741 3891 42146291 42146440 2.440000e-42 183.0
22 TraesCS5D01G150000 chr1B 87.742 155 17 2 3741 3894 395979386 395979233 3.160000e-41 180.0
23 TraesCS5D01G150000 chr1B 78.082 146 32 0 380 525 10359131 10358986 4.230000e-15 93.5
24 TraesCS5D01G150000 chr7D 87.179 156 18 2 3737 3891 508610977 508611131 4.080000e-40 176.0
25 TraesCS5D01G150000 chr7A 86.624 157 19 2 3739 3894 1528797 1528642 5.280000e-39 172.0
26 TraesCS5D01G150000 chr7A 77.215 316 51 12 2668 2967 10222105 10221795 8.840000e-37 165.0
27 TraesCS5D01G150000 chr7A 76.829 328 54 13 2656 2967 10241297 10240976 8.840000e-37 165.0
28 TraesCS5D01G150000 chr7A 73.045 486 104 21 112 585 144570171 144569701 3.200000e-31 147.0
29 TraesCS5D01G150000 chr7A 87.000 100 13 0 1053 1152 10223953 10223854 3.250000e-21 113.0
30 TraesCS5D01G150000 chr3A 85.625 160 19 3 993 1151 584276538 584276694 8.840000e-37 165.0
31 TraesCS5D01G150000 chr3A 83.333 132 19 3 395 525 595387575 595387446 6.980000e-23 119.0
32 TraesCS5D01G150000 chr3A 86.250 80 11 0 1869 1948 584276988 584277067 1.970000e-13 87.9
33 TraesCS5D01G150000 chr3A 80.808 99 19 0 181 279 430979665 430979763 1.180000e-10 78.7
34 TraesCS5D01G150000 chr3B 88.189 127 15 0 2111 2237 581029962 581030088 6.880000e-33 152.0
35 TraesCS5D01G150000 chr3B 85.000 80 12 0 1869 1948 581029701 581029780 9.160000e-12 82.4
36 TraesCS5D01G150000 chr1D 73.053 475 99 24 120 584 192363035 192362580 1.490000e-29 141.0
37 TraesCS5D01G150000 chr1D 72.404 337 70 19 105 426 27892098 27892426 7.080000e-13 86.1
38 TraesCS5D01G150000 chr1A 78.191 188 35 5 122 305 524457683 524457498 9.030000e-22 115.0
39 TraesCS5D01G150000 chr6D 82.301 113 19 1 356 468 1776516 1776627 3.270000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G150000 chr5D 238709757 238713733 3976 True 7345.0 7345 100.0000 1 3977 1 chr5D.!!$R1 3976
1 TraesCS5D01G150000 chr5A 315493867 315497479 3612 False 4750.0 4750 90.5100 104 3734 1 chr5A.!!$F1 3630
2 TraesCS5D01G150000 chr5B 266002058 266006703 4645 False 2298.5 4037 89.7985 104 3550 2 chr5B.!!$F1 3446

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
94 95 0.033796 TCCCTCTAACCACCGACGAT 60.034 55.000 0.00 0.00 0.0 3.73 F
298 301 0.321298 CGAGGGATTTGGTCGGTGTT 60.321 55.000 0.00 0.00 0.0 3.32 F
796 2048 0.323725 CTTACATGCTGGGCCCACTT 60.324 55.000 24.45 13.39 0.0 3.16 F
1270 2530 1.059369 CTCGCGTGAATTGCTTCCG 59.941 57.895 5.77 0.00 0.0 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1364 2630 2.348411 CCCAATTGGTACCAGGCTAG 57.652 55.000 22.91 4.49 0.00 3.42 R
2172 3443 1.004277 GGTCTCTGTCGTTGCTGTCG 61.004 60.000 0.00 0.00 0.00 4.35 R
2602 3873 3.305720 TGTAGGAACTGACTTCACAGGT 58.694 45.455 0.00 0.00 41.52 4.00 R
3233 4523 0.815213 TGTCAACACTCTGGCAGCAC 60.815 55.000 10.34 0.00 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.453572 ACAAGATGATAATTGTAAGAAGAAGCA 57.546 29.630 0.00 0.00 37.85 3.91
29 30 9.713740 CAAGATGATAATTGTAAGAAGAAGCAC 57.286 33.333 0.00 0.00 0.00 4.40
30 31 9.678260 AAGATGATAATTGTAAGAAGAAGCACT 57.322 29.630 0.00 0.00 0.00 4.40
31 32 9.107177 AGATGATAATTGTAAGAAGAAGCACTG 57.893 33.333 0.00 0.00 0.00 3.66
32 33 9.102757 GATGATAATTGTAAGAAGAAGCACTGA 57.897 33.333 0.00 0.00 0.00 3.41
33 34 9.624373 ATGATAATTGTAAGAAGAAGCACTGAT 57.376 29.630 0.00 0.00 0.00 2.90
34 35 9.453572 TGATAATTGTAAGAAGAAGCACTGATT 57.546 29.630 0.00 0.00 0.00 2.57
37 38 7.856145 ATTGTAAGAAGAAGCACTGATTAGG 57.144 36.000 0.00 0.00 0.00 2.69
38 39 5.734720 TGTAAGAAGAAGCACTGATTAGGG 58.265 41.667 0.00 0.00 0.00 3.53
39 40 3.922171 AGAAGAAGCACTGATTAGGGG 57.078 47.619 0.00 0.00 0.00 4.79
40 41 2.507471 AGAAGAAGCACTGATTAGGGGG 59.493 50.000 0.00 0.00 0.00 5.40
41 42 1.972588 AGAAGCACTGATTAGGGGGT 58.027 50.000 0.00 0.00 0.00 4.95
42 43 2.279173 AGAAGCACTGATTAGGGGGTT 58.721 47.619 0.00 0.00 0.00 4.11
43 44 2.649816 AGAAGCACTGATTAGGGGGTTT 59.350 45.455 0.00 0.00 0.00 3.27
44 45 3.850173 AGAAGCACTGATTAGGGGGTTTA 59.150 43.478 0.00 0.00 0.00 2.01
45 46 4.291249 AGAAGCACTGATTAGGGGGTTTAA 59.709 41.667 0.00 0.00 0.00 1.52
46 47 3.964411 AGCACTGATTAGGGGGTTTAAC 58.036 45.455 0.00 0.00 0.00 2.01
47 48 3.332485 AGCACTGATTAGGGGGTTTAACA 59.668 43.478 0.00 0.00 0.00 2.41
48 49 4.017499 AGCACTGATTAGGGGGTTTAACAT 60.017 41.667 0.00 0.00 0.00 2.71
49 50 4.338400 GCACTGATTAGGGGGTTTAACATC 59.662 45.833 0.00 0.00 0.00 3.06
50 51 4.887655 CACTGATTAGGGGGTTTAACATCC 59.112 45.833 0.00 0.00 0.00 3.51
51 52 4.542525 ACTGATTAGGGGGTTTAACATCCA 59.457 41.667 8.48 0.00 0.00 3.41
52 53 5.195756 ACTGATTAGGGGGTTTAACATCCAT 59.804 40.000 8.48 4.62 0.00 3.41
53 54 5.701224 TGATTAGGGGGTTTAACATCCATC 58.299 41.667 8.48 4.94 0.00 3.51
54 55 5.194740 TGATTAGGGGGTTTAACATCCATCA 59.805 40.000 8.48 6.85 0.00 3.07
55 56 5.538082 TTAGGGGGTTTAACATCCATCAA 57.462 39.130 8.48 0.00 0.00 2.57
56 57 4.625225 AGGGGGTTTAACATCCATCAAT 57.375 40.909 8.48 0.00 0.00 2.57
57 58 4.959080 AGGGGGTTTAACATCCATCAATT 58.041 39.130 8.48 0.00 0.00 2.32
58 59 6.098716 AGGGGGTTTAACATCCATCAATTA 57.901 37.500 8.48 0.00 0.00 1.40
59 60 6.136155 AGGGGGTTTAACATCCATCAATTAG 58.864 40.000 8.48 0.00 0.00 1.73
60 61 5.304357 GGGGGTTTAACATCCATCAATTAGG 59.696 44.000 8.48 0.00 0.00 2.69
61 62 5.221441 GGGGTTTAACATCCATCAATTAGGC 60.221 44.000 0.00 0.00 0.00 3.93
62 63 5.362430 GGGTTTAACATCCATCAATTAGGCA 59.638 40.000 0.00 0.00 0.00 4.75
63 64 6.041979 GGGTTTAACATCCATCAATTAGGCAT 59.958 38.462 0.00 0.00 0.00 4.40
64 65 7.232534 GGGTTTAACATCCATCAATTAGGCATA 59.767 37.037 0.00 0.00 0.00 3.14
65 66 8.637986 GGTTTAACATCCATCAATTAGGCATAA 58.362 33.333 0.00 0.00 0.00 1.90
68 69 7.472334 AACATCCATCAATTAGGCATAATCC 57.528 36.000 3.76 0.00 31.02 3.01
69 70 5.954150 ACATCCATCAATTAGGCATAATCCC 59.046 40.000 3.76 0.00 31.02 3.85
70 71 5.865977 TCCATCAATTAGGCATAATCCCT 57.134 39.130 3.76 0.00 36.47 4.20
71 72 5.573219 TCCATCAATTAGGCATAATCCCTG 58.427 41.667 3.76 0.00 33.88 4.45
72 73 4.159135 CCATCAATTAGGCATAATCCCTGC 59.841 45.833 3.76 0.00 38.93 4.85
73 74 4.729552 TCAATTAGGCATAATCCCTGCT 57.270 40.909 3.76 0.00 39.60 4.24
74 75 5.065613 TCAATTAGGCATAATCCCTGCTT 57.934 39.130 3.76 0.00 39.60 3.91
75 76 5.457686 TCAATTAGGCATAATCCCTGCTTT 58.542 37.500 3.76 0.00 39.60 3.51
76 77 5.536161 TCAATTAGGCATAATCCCTGCTTTC 59.464 40.000 3.76 0.00 39.60 2.62
77 78 2.371658 AGGCATAATCCCTGCTTTCC 57.628 50.000 0.00 0.00 39.60 3.13
78 79 1.133356 AGGCATAATCCCTGCTTTCCC 60.133 52.381 0.00 0.00 39.60 3.97
79 80 1.133356 GGCATAATCCCTGCTTTCCCT 60.133 52.381 0.00 0.00 39.60 4.20
80 81 2.234143 GCATAATCCCTGCTTTCCCTC 58.766 52.381 0.00 0.00 36.68 4.30
81 82 2.158549 GCATAATCCCTGCTTTCCCTCT 60.159 50.000 0.00 0.00 36.68 3.69
82 83 3.073062 GCATAATCCCTGCTTTCCCTCTA 59.927 47.826 0.00 0.00 36.68 2.43
83 84 4.446311 GCATAATCCCTGCTTTCCCTCTAA 60.446 45.833 0.00 0.00 36.68 2.10
84 85 3.653835 AATCCCTGCTTTCCCTCTAAC 57.346 47.619 0.00 0.00 0.00 2.34
85 86 1.286248 TCCCTGCTTTCCCTCTAACC 58.714 55.000 0.00 0.00 0.00 2.85
86 87 0.991920 CCCTGCTTTCCCTCTAACCA 59.008 55.000 0.00 0.00 0.00 3.67
87 88 1.340114 CCCTGCTTTCCCTCTAACCAC 60.340 57.143 0.00 0.00 0.00 4.16
88 89 1.340114 CCTGCTTTCCCTCTAACCACC 60.340 57.143 0.00 0.00 0.00 4.61
89 90 0.323629 TGCTTTCCCTCTAACCACCG 59.676 55.000 0.00 0.00 0.00 4.94
90 91 0.611714 GCTTTCCCTCTAACCACCGA 59.388 55.000 0.00 0.00 0.00 4.69
91 92 1.675116 GCTTTCCCTCTAACCACCGAC 60.675 57.143 0.00 0.00 0.00 4.79
92 93 0.604578 TTTCCCTCTAACCACCGACG 59.395 55.000 0.00 0.00 0.00 5.12
93 94 0.251297 TTCCCTCTAACCACCGACGA 60.251 55.000 0.00 0.00 0.00 4.20
94 95 0.033796 TCCCTCTAACCACCGACGAT 60.034 55.000 0.00 0.00 0.00 3.73
95 96 0.822164 CCCTCTAACCACCGACGATT 59.178 55.000 0.00 0.00 0.00 3.34
96 97 1.470979 CCCTCTAACCACCGACGATTG 60.471 57.143 0.00 0.00 0.00 2.67
97 98 1.278238 CTCTAACCACCGACGATTGC 58.722 55.000 0.00 0.00 0.00 3.56
98 99 0.892755 TCTAACCACCGACGATTGCT 59.107 50.000 0.00 0.00 0.00 3.91
99 100 2.093890 TCTAACCACCGACGATTGCTA 58.906 47.619 0.00 0.00 0.00 3.49
100 101 2.691526 TCTAACCACCGACGATTGCTAT 59.308 45.455 0.00 0.00 0.00 2.97
101 102 2.396590 AACCACCGACGATTGCTATT 57.603 45.000 0.00 0.00 0.00 1.73
102 103 2.396590 ACCACCGACGATTGCTATTT 57.603 45.000 0.00 0.00 0.00 1.40
135 138 5.007921 GCTTCGTCTTTAGGTGGTTTTTGTA 59.992 40.000 0.00 0.00 0.00 2.41
157 160 7.288560 TGTATTTGGTTAGGGTTTGTGTTCTA 58.711 34.615 0.00 0.00 0.00 2.10
222 225 0.399075 TTTCCTCTCAACCCCCGTTC 59.601 55.000 0.00 0.00 0.00 3.95
252 255 3.379240 CGTCTAGCATCATTGGAGAGTG 58.621 50.000 0.00 0.00 0.00 3.51
269 272 3.150767 GAGTGTGTAGAGGTGTGTCTCT 58.849 50.000 0.00 0.00 45.22 3.10
272 275 4.073549 GTGTGTAGAGGTGTGTCTCTAGT 58.926 47.826 2.24 0.00 44.27 2.57
298 301 0.321298 CGAGGGATTTGGTCGGTGTT 60.321 55.000 0.00 0.00 0.00 3.32
308 311 1.228657 GGTCGGTGTTGGTCTTCAGC 61.229 60.000 0.00 0.00 0.00 4.26
310 313 4.771127 GGTGTTGGTCTTCAGCGA 57.229 55.556 0.00 0.00 0.00 4.93
311 314 2.533318 GGTGTTGGTCTTCAGCGAG 58.467 57.895 0.00 0.00 0.00 5.03
331 334 5.877031 CGAGTCTTCGTGGATAACTTCTTA 58.123 41.667 0.00 0.00 41.84 2.10
332 335 6.320171 CGAGTCTTCGTGGATAACTTCTTAA 58.680 40.000 0.00 0.00 41.84 1.85
354 357 9.161684 CTTAATTCGTGTGTTTACAGGTTAAAC 57.838 33.333 0.00 0.81 41.97 2.01
359 362 5.526846 CGTGTGTTTACAGGTTAAACCCTTA 59.473 40.000 4.82 0.00 39.75 2.69
367 370 6.803366 ACAGGTTAAACCCTTACGATCTAT 57.197 37.500 0.00 0.00 39.75 1.98
378 381 8.246430 ACCCTTACGATCTATGATTTTCTGTA 57.754 34.615 0.00 0.00 0.00 2.74
385 388 6.366061 CGATCTATGATTTTCTGTAATCGGCA 59.634 38.462 0.00 0.00 37.34 5.69
434 438 4.547367 GGGCCTTAGCACGCCGAT 62.547 66.667 0.84 0.00 46.73 4.18
439 443 1.636340 CTTAGCACGCCGATTTCCG 59.364 57.895 0.00 0.00 38.18 4.30
491 495 1.599240 GATGAGGGAAGGGCGATGC 60.599 63.158 0.00 0.00 0.00 3.91
544 548 1.876156 GAAATCATCGCTGGGTGATCC 59.124 52.381 9.11 0.00 34.14 3.36
563 567 4.453480 TCCAAGGATCTGAAGGTGTTTT 57.547 40.909 0.00 0.00 0.00 2.43
622 626 5.763088 TCTGATAGTTGTACTGCGATGATC 58.237 41.667 0.00 0.00 0.00 2.92
660 1906 4.693095 TGAAGGTTTTCCAAAAAGCACAAC 59.307 37.500 14.54 5.62 43.73 3.32
690 1936 4.767255 CAGTCCACGGCCCAGCTC 62.767 72.222 0.00 0.00 0.00 4.09
723 1970 2.004808 GCCCTTATTCAGCGGCAACC 62.005 60.000 1.45 0.00 38.25 3.77
795 2047 1.304282 CTTACATGCTGGGCCCACT 59.696 57.895 24.45 5.50 0.00 4.00
796 2048 0.323725 CTTACATGCTGGGCCCACTT 60.324 55.000 24.45 13.39 0.00 3.16
856 2108 1.067213 GCACGCTCTCCTCTTCTTCTT 60.067 52.381 0.00 0.00 0.00 2.52
858 2110 2.491693 CACGCTCTCCTCTTCTTCTTCT 59.508 50.000 0.00 0.00 0.00 2.85
859 2111 3.056891 CACGCTCTCCTCTTCTTCTTCTT 60.057 47.826 0.00 0.00 0.00 2.52
860 2112 3.192633 ACGCTCTCCTCTTCTTCTTCTTC 59.807 47.826 0.00 0.00 0.00 2.87
861 2113 3.443681 CGCTCTCCTCTTCTTCTTCTTCT 59.556 47.826 0.00 0.00 0.00 2.85
862 2114 4.082245 CGCTCTCCTCTTCTTCTTCTTCTT 60.082 45.833 0.00 0.00 0.00 2.52
863 2115 5.410924 GCTCTCCTCTTCTTCTTCTTCTTC 58.589 45.833 0.00 0.00 0.00 2.87
864 2116 5.185828 GCTCTCCTCTTCTTCTTCTTCTTCT 59.814 44.000 0.00 0.00 0.00 2.85
865 2117 6.625960 GCTCTCCTCTTCTTCTTCTTCTTCTC 60.626 46.154 0.00 0.00 0.00 2.87
866 2118 5.714806 TCTCCTCTTCTTCTTCTTCTTCTCC 59.285 44.000 0.00 0.00 0.00 3.71
867 2119 5.398236 TCCTCTTCTTCTTCTTCTTCTCCA 58.602 41.667 0.00 0.00 0.00 3.86
870 2122 6.650390 CCTCTTCTTCTTCTTCTTCTCCAAAG 59.350 42.308 0.00 0.00 0.00 2.77
874 2127 4.647564 TCTTCTTCTTCTCCAAAGGCAT 57.352 40.909 0.00 0.00 0.00 4.40
892 2145 2.805313 ATCCACACCTCCCTCTGCGA 62.805 60.000 0.00 0.00 0.00 5.10
899 2152 2.282958 TCCCTCTGCGACTCCGTT 60.283 61.111 0.00 0.00 38.24 4.44
935 2188 2.024918 CTTTGGGCGATTCCATCCG 58.975 57.895 0.00 0.00 36.58 4.18
940 2193 3.038417 GCGATTCCATCCGAGGCG 61.038 66.667 0.00 0.00 0.00 5.52
958 2211 1.308998 CGAGAAGAGGAGAGGAGAGC 58.691 60.000 0.00 0.00 0.00 4.09
972 2225 2.441164 GAGCAGAGGAGGAGGCGA 60.441 66.667 0.00 0.00 0.00 5.54
986 2239 1.153804 GGCGACGGAGGAGAAGTTC 60.154 63.158 0.00 0.00 0.00 3.01
1154 2407 4.540735 CCCCACCATCGGTACCGC 62.541 72.222 29.64 0.00 39.59 5.68
1155 2408 4.540735 CCCACCATCGGTACCGCC 62.541 72.222 29.64 0.00 39.59 6.13
1224 2484 1.896660 ACGCTCACACGCCCAAATT 60.897 52.632 0.00 0.00 36.19 1.82
1270 2530 1.059369 CTCGCGTGAATTGCTTCCG 59.941 57.895 5.77 0.00 0.00 4.30
1364 2630 2.079158 TGTGCTAGATTTCTGTGCTGC 58.921 47.619 0.00 0.00 0.00 5.25
1397 2663 3.758554 CCAATTGGGTTCTGTACTTGGAG 59.241 47.826 17.36 0.00 32.70 3.86
1478 2746 3.561241 TGGGTGCCTGGTGCGTAA 61.561 61.111 0.00 0.00 45.60 3.18
1544 2812 5.689383 TTTTGTTAGGTTCAGCAGCTTAG 57.311 39.130 0.00 0.00 34.13 2.18
1575 2843 2.076863 GAAGTTGTCCTGGAATCCGTG 58.923 52.381 0.00 0.00 0.00 4.94
1668 2939 1.889573 GCAGCGATCCAGTTAGGGC 60.890 63.158 0.00 0.00 38.24 5.19
1689 2960 3.575687 GCCCTTCTATTGCAATATGGCTT 59.424 43.478 26.22 6.87 34.04 4.35
1740 3011 4.094442 GTGAAGTACTTGCCGAATTAAGGG 59.906 45.833 14.14 0.00 0.00 3.95
1762 3033 6.552350 AGGGTGTTTGTACTTCTGTTAGTAGA 59.448 38.462 0.00 0.00 31.56 2.59
1816 3087 1.063266 TCTTGTTTTGGTTGGGAGGCT 60.063 47.619 0.00 0.00 0.00 4.58
1943 3214 1.943730 TTGGTGGCCAGGACAAGGTT 61.944 55.000 5.11 0.00 33.81 3.50
1955 3226 5.253330 CAGGACAAGGTTAGGATTTTGCTA 58.747 41.667 0.00 0.00 0.00 3.49
1971 3242 8.090831 GGATTTTGCTATTTTCTTCTTCTTGGT 58.909 33.333 0.00 0.00 0.00 3.67
1973 3244 9.836864 ATTTTGCTATTTTCTTCTTCTTGGTTT 57.163 25.926 0.00 0.00 0.00 3.27
1996 3267 7.833285 TTACTCTTTGGCTGTTATTTCCTTT 57.167 32.000 0.00 0.00 0.00 3.11
2047 3318 5.433526 TCACCTGTTTGCAGTTACTAAAGT 58.566 37.500 0.00 0.00 41.02 2.66
2172 3443 3.686016 TCAGGGCCTTATCTTTGTTGTC 58.314 45.455 1.32 0.00 0.00 3.18
2391 3662 8.270744 ACAGCCTGAAGAATCTTATCTTATTGT 58.729 33.333 0.00 0.00 39.70 2.71
2392 3663 9.118300 CAGCCTGAAGAATCTTATCTTATTGTT 57.882 33.333 0.00 0.00 39.70 2.83
2394 3665 9.336171 GCCTGAAGAATCTTATCTTATTGTTCT 57.664 33.333 0.00 0.00 39.70 3.01
2522 3793 6.647334 TGAGAACTTGATTTTGCACCATTA 57.353 33.333 0.00 0.00 0.00 1.90
2620 3891 3.574826 GTCTACCTGTGAAGTCAGTTCCT 59.425 47.826 0.00 0.00 33.75 3.36
2682 3957 4.344978 TGCTAACTGTCACTAGGATGAGT 58.655 43.478 0.00 0.00 0.00 3.41
2827 4102 9.438228 GACCCTTGCTAATTTTATACCTAGATC 57.562 37.037 0.00 0.00 0.00 2.75
2846 4129 8.854117 CCTAGATCATAATTTTGCTAAGGCTTT 58.146 33.333 4.45 0.00 39.59 3.51
2871 4154 4.634004 TGATAAGCATGGTGTTACTTTCCG 59.366 41.667 0.00 0.00 0.00 4.30
2878 4161 5.123344 GCATGGTGTTACTTTCCGTTCTATT 59.877 40.000 0.00 0.00 0.00 1.73
2879 4162 6.542852 CATGGTGTTACTTTCCGTTCTATTG 58.457 40.000 0.00 0.00 0.00 1.90
2889 4172 7.280356 ACTTTCCGTTCTATTGCAGGTATATT 58.720 34.615 0.00 0.00 0.00 1.28
2952 4235 1.067295 TGGACTGGCTCTCCAACAAT 58.933 50.000 1.66 0.00 42.91 2.71
2983 4266 6.820656 CAGCAAGGTTTCTATCTAACACTCAT 59.179 38.462 0.00 0.00 0.00 2.90
2985 4268 6.818644 GCAAGGTTTCTATCTAACACTCATGA 59.181 38.462 0.00 0.00 0.00 3.07
2989 4272 7.397476 AGGTTTCTATCTAACACTCATGACTGA 59.603 37.037 9.07 0.00 0.00 3.41
2995 4278 4.937620 TCTAACACTCATGACTGAAATGGC 59.062 41.667 9.07 0.00 0.00 4.40
3053 4339 6.752285 TTTGGGGTTCTAGTAGTACAAACT 57.248 37.500 8.92 6.21 39.91 2.66
3057 4343 7.576403 TGGGGTTCTAGTAGTACAAACTTTTT 58.424 34.615 8.92 0.00 37.15 1.94
3060 4346 7.716560 GGGTTCTAGTAGTACAAACTTTTTCCA 59.283 37.037 8.92 0.00 37.15 3.53
3072 4362 4.311816 ACTTTTTCCAGTGTTCAGCATG 57.688 40.909 0.00 0.00 37.54 4.06
3134 4424 6.524586 GCATGACACTAACAAGTGCTATTTTC 59.475 38.462 0.00 0.00 43.13 2.29
3135 4425 7.573843 GCATGACACTAACAAGTGCTATTTTCT 60.574 37.037 0.00 0.00 43.13 2.52
3140 4430 7.499232 ACACTAACAAGTGCTATTTTCTTCACT 59.501 33.333 5.47 0.00 43.13 3.41
3157 4447 2.106338 TCACTGGATTGCAGTCCTGAAA 59.894 45.455 32.56 20.28 38.96 2.69
3193 4483 1.670406 AGAGCCGCAGAAGCAACTG 60.670 57.895 5.91 5.91 42.27 3.16
3233 4523 7.498900 TGACTGGAATATGTAGGCATGTTAAAG 59.501 37.037 0.00 0.00 36.72 1.85
3386 4692 2.169978 CCTGAGCCTGATGAGTCATGAA 59.830 50.000 11.20 0.00 32.98 2.57
3399 4705 1.487976 GTCATGAAGATCCTGCCCTGA 59.512 52.381 0.00 0.00 0.00 3.86
3413 4719 1.200020 GCCCTGATTTTGTGAACCGAG 59.800 52.381 0.00 0.00 0.00 4.63
3460 4766 7.453393 TCTCATTCCTGTGTATAATTGATCCC 58.547 38.462 0.00 0.00 0.00 3.85
3484 4790 3.057350 GTCTCTAGTTAACGAACGTTGCG 59.943 47.826 20.29 11.96 40.76 4.85
3568 4874 3.462982 GTTGGGGTTTTCTCGCAAAAAT 58.537 40.909 0.00 0.00 38.47 1.82
3571 4877 5.277857 TGGGGTTTTCTCGCAAAAATAAA 57.722 34.783 0.00 0.00 31.29 1.40
3572 4878 5.671493 TGGGGTTTTCTCGCAAAAATAAAA 58.329 33.333 0.00 0.00 31.29 1.52
3573 4879 6.292150 TGGGGTTTTCTCGCAAAAATAAAAT 58.708 32.000 0.00 0.00 31.29 1.82
3574 4880 7.442656 TGGGGTTTTCTCGCAAAAATAAAATA 58.557 30.769 0.00 0.00 31.29 1.40
3575 4881 7.931948 TGGGGTTTTCTCGCAAAAATAAAATAA 59.068 29.630 0.00 0.00 31.29 1.40
3576 4882 8.775527 GGGGTTTTCTCGCAAAAATAAAATAAA 58.224 29.630 0.00 0.00 31.29 1.40
3611 4917 9.172060 AGGTTTCTATGGGTTTTATAGCTAGAT 57.828 33.333 0.00 0.00 0.00 1.98
3647 4953 9.899661 TGGTTAAAATGTAGCTATAATCACACT 57.100 29.630 0.00 0.00 0.00 3.55
3692 5002 4.618378 AATTATTGGACCCCTTTAGCCA 57.382 40.909 0.00 0.00 0.00 4.75
3695 5005 1.431195 TTGGACCCCTTTAGCCAGCA 61.431 55.000 0.00 0.00 0.00 4.41
3706 5016 4.479619 CTTTAGCCAGCAAATGTTCACTC 58.520 43.478 0.00 0.00 0.00 3.51
3729 5042 2.100584 GGGATGGCATTTGCGAATGTTA 59.899 45.455 24.39 15.46 43.67 2.41
3730 5043 3.243839 GGGATGGCATTTGCGAATGTTAT 60.244 43.478 24.39 18.77 43.67 1.89
3733 5046 5.982516 GGATGGCATTTGCGAATGTTATTTA 59.017 36.000 24.39 8.29 43.67 1.40
3734 5047 6.074356 GGATGGCATTTGCGAATGTTATTTAC 60.074 38.462 24.39 8.65 43.67 2.01
3735 5048 5.105752 TGGCATTTGCGAATGTTATTTACC 58.894 37.500 24.39 16.33 43.67 2.85
3736 5049 4.506288 GGCATTTGCGAATGTTATTTACCC 59.494 41.667 24.39 12.66 43.67 3.69
3737 5050 5.105752 GCATTTGCGAATGTTATTTACCCA 58.894 37.500 24.39 0.00 43.67 4.51
3738 5051 5.578727 GCATTTGCGAATGTTATTTACCCAA 59.421 36.000 24.39 0.00 43.67 4.12
3739 5052 6.091441 GCATTTGCGAATGTTATTTACCCAAA 59.909 34.615 24.39 0.00 43.67 3.28
3740 5053 7.201600 GCATTTGCGAATGTTATTTACCCAAAT 60.202 33.333 24.39 0.00 43.67 2.32
3741 5054 9.307121 CATTTGCGAATGTTATTTACCCAAATA 57.693 29.630 17.29 0.00 38.25 1.40
3742 5055 8.690680 TTTGCGAATGTTATTTACCCAAATAC 57.309 30.769 0.00 0.00 36.55 1.89
3743 5056 7.633193 TGCGAATGTTATTTACCCAAATACT 57.367 32.000 0.00 0.00 36.55 2.12
3744 5057 7.699566 TGCGAATGTTATTTACCCAAATACTC 58.300 34.615 0.00 0.00 36.55 2.59
3745 5058 7.136772 GCGAATGTTATTTACCCAAATACTCC 58.863 38.462 0.00 0.00 36.55 3.85
3746 5059 7.012989 GCGAATGTTATTTACCCAAATACTCCT 59.987 37.037 0.00 0.00 36.55 3.69
3747 5060 8.342634 CGAATGTTATTTACCCAAATACTCCTG 58.657 37.037 0.00 0.00 36.55 3.86
3748 5061 9.185680 GAATGTTATTTACCCAAATACTCCTGT 57.814 33.333 0.00 0.00 36.55 4.00
3749 5062 8.747538 ATGTTATTTACCCAAATACTCCTGTC 57.252 34.615 0.00 0.00 36.55 3.51
3750 5063 6.819649 TGTTATTTACCCAAATACTCCTGTCG 59.180 38.462 0.00 0.00 36.55 4.35
3751 5064 4.895668 TTTACCCAAATACTCCTGTCGT 57.104 40.909 0.00 0.00 0.00 4.34
3752 5065 4.895668 TTACCCAAATACTCCTGTCGTT 57.104 40.909 0.00 0.00 0.00 3.85
3753 5066 3.782656 ACCCAAATACTCCTGTCGTTT 57.217 42.857 0.00 0.00 0.00 3.60
3754 5067 3.671716 ACCCAAATACTCCTGTCGTTTC 58.328 45.455 0.00 0.00 0.00 2.78
3755 5068 3.326880 ACCCAAATACTCCTGTCGTTTCT 59.673 43.478 0.00 0.00 0.00 2.52
3756 5069 4.529377 ACCCAAATACTCCTGTCGTTTCTA 59.471 41.667 0.00 0.00 0.00 2.10
3757 5070 5.012354 ACCCAAATACTCCTGTCGTTTCTAA 59.988 40.000 0.00 0.00 0.00 2.10
3758 5071 5.935789 CCCAAATACTCCTGTCGTTTCTAAA 59.064 40.000 0.00 0.00 0.00 1.85
3759 5072 6.598064 CCCAAATACTCCTGTCGTTTCTAAAT 59.402 38.462 0.00 0.00 0.00 1.40
3760 5073 7.767198 CCCAAATACTCCTGTCGTTTCTAAATA 59.233 37.037 0.00 0.00 0.00 1.40
3761 5074 9.326413 CCAAATACTCCTGTCGTTTCTAAATAT 57.674 33.333 0.00 0.00 0.00 1.28
3767 5080 8.968969 ACTCCTGTCGTTTCTAAATATAAGTCT 58.031 33.333 0.00 0.00 0.00 3.24
3768 5081 9.804758 CTCCTGTCGTTTCTAAATATAAGTCTT 57.195 33.333 0.00 0.00 0.00 3.01
3841 5154 6.595772 AGATTGTAGATTCACTCATTTCGC 57.404 37.500 0.00 0.00 0.00 4.70
3842 5155 6.344500 AGATTGTAGATTCACTCATTTCGCT 58.656 36.000 0.00 0.00 0.00 4.93
3843 5156 6.820656 AGATTGTAGATTCACTCATTTCGCTT 59.179 34.615 0.00 0.00 0.00 4.68
3844 5157 6.408858 TTGTAGATTCACTCATTTCGCTTC 57.591 37.500 0.00 0.00 0.00 3.86
3845 5158 4.562789 TGTAGATTCACTCATTTCGCTTCG 59.437 41.667 0.00 0.00 0.00 3.79
3846 5159 3.589988 AGATTCACTCATTTCGCTTCGT 58.410 40.909 0.00 0.00 0.00 3.85
3847 5160 4.744570 AGATTCACTCATTTCGCTTCGTA 58.255 39.130 0.00 0.00 0.00 3.43
3848 5161 5.352284 AGATTCACTCATTTCGCTTCGTAT 58.648 37.500 0.00 0.00 0.00 3.06
3849 5162 4.840401 TTCACTCATTTCGCTTCGTATG 57.160 40.909 0.00 0.00 0.00 2.39
3850 5163 3.845178 TCACTCATTTCGCTTCGTATGT 58.155 40.909 0.00 0.00 0.00 2.29
3851 5164 4.989044 TCACTCATTTCGCTTCGTATGTA 58.011 39.130 0.00 0.00 0.00 2.29
3852 5165 5.034797 TCACTCATTTCGCTTCGTATGTAG 58.965 41.667 0.00 0.00 0.00 2.74
3853 5166 4.798907 CACTCATTTCGCTTCGTATGTAGT 59.201 41.667 0.00 0.00 0.00 2.73
3854 5167 5.035443 ACTCATTTCGCTTCGTATGTAGTC 58.965 41.667 0.00 0.00 0.00 2.59
3855 5168 4.357142 TCATTTCGCTTCGTATGTAGTCC 58.643 43.478 0.00 0.00 0.00 3.85
3856 5169 3.853831 TTTCGCTTCGTATGTAGTCCA 57.146 42.857 0.00 0.00 0.00 4.02
3857 5170 4.380841 TTTCGCTTCGTATGTAGTCCAT 57.619 40.909 0.00 0.00 37.58 3.41
3858 5171 5.503662 TTTCGCTTCGTATGTAGTCCATA 57.496 39.130 0.00 0.00 34.86 2.74
3859 5172 5.700722 TTCGCTTCGTATGTAGTCCATAT 57.299 39.130 0.00 0.00 38.29 1.78
3860 5173 5.700722 TCGCTTCGTATGTAGTCCATATT 57.299 39.130 0.00 0.00 38.29 1.28
3861 5174 5.458015 TCGCTTCGTATGTAGTCCATATTG 58.542 41.667 0.00 0.00 38.29 1.90
3862 5175 5.239963 TCGCTTCGTATGTAGTCCATATTGA 59.760 40.000 0.00 0.00 38.29 2.57
3863 5176 5.918576 CGCTTCGTATGTAGTCCATATTGAA 59.081 40.000 0.00 0.00 38.29 2.69
3864 5177 6.419710 CGCTTCGTATGTAGTCCATATTGAAA 59.580 38.462 0.00 0.00 38.29 2.69
3865 5178 7.116376 CGCTTCGTATGTAGTCCATATTGAAAT 59.884 37.037 0.00 0.00 38.29 2.17
3866 5179 8.436200 GCTTCGTATGTAGTCCATATTGAAATC 58.564 37.037 0.00 0.00 38.29 2.17
3867 5180 9.698309 CTTCGTATGTAGTCCATATTGAAATCT 57.302 33.333 0.00 0.00 38.29 2.40
3893 5206 9.603921 TTTATAAGGTCTTGTATTTAGGAACGG 57.396 33.333 0.00 0.00 0.00 4.44
3894 5207 4.482952 AGGTCTTGTATTTAGGAACGGG 57.517 45.455 0.00 0.00 0.00 5.28
3895 5208 3.842436 AGGTCTTGTATTTAGGAACGGGT 59.158 43.478 0.00 0.00 0.00 5.28
3896 5209 3.937079 GGTCTTGTATTTAGGAACGGGTG 59.063 47.826 0.00 0.00 0.00 4.61
3897 5210 4.564199 GGTCTTGTATTTAGGAACGGGTGT 60.564 45.833 0.00 0.00 0.00 4.16
3898 5211 5.337491 GGTCTTGTATTTAGGAACGGGTGTA 60.337 44.000 0.00 0.00 0.00 2.90
3899 5212 5.578336 GTCTTGTATTTAGGAACGGGTGTAC 59.422 44.000 0.00 0.00 0.00 2.90
3900 5213 5.481473 TCTTGTATTTAGGAACGGGTGTACT 59.519 40.000 0.00 0.00 0.00 2.73
3901 5214 5.743636 TGTATTTAGGAACGGGTGTACTT 57.256 39.130 0.00 0.00 0.00 2.24
3902 5215 6.112927 TGTATTTAGGAACGGGTGTACTTT 57.887 37.500 0.00 0.00 0.00 2.66
3903 5216 7.238486 TGTATTTAGGAACGGGTGTACTTTA 57.762 36.000 0.00 0.00 0.00 1.85
3904 5217 7.322664 TGTATTTAGGAACGGGTGTACTTTAG 58.677 38.462 0.00 0.00 0.00 1.85
3905 5218 6.610075 ATTTAGGAACGGGTGTACTTTAGA 57.390 37.500 0.00 0.00 0.00 2.10
3906 5219 6.418057 TTTAGGAACGGGTGTACTTTAGAA 57.582 37.500 0.00 0.00 0.00 2.10
3907 5220 6.610075 TTAGGAACGGGTGTACTTTAGAAT 57.390 37.500 0.00 0.00 0.00 2.40
3908 5221 7.716799 TTAGGAACGGGTGTACTTTAGAATA 57.283 36.000 0.00 0.00 0.00 1.75
3909 5222 5.970592 AGGAACGGGTGTACTTTAGAATAC 58.029 41.667 0.00 0.00 0.00 1.89
3910 5223 5.481473 AGGAACGGGTGTACTTTAGAATACA 59.519 40.000 0.00 0.00 0.00 2.29
3911 5224 5.578336 GGAACGGGTGTACTTTAGAATACAC 59.422 44.000 6.07 6.07 46.90 2.90
3917 5230 6.978343 GTGTACTTTAGAATACACATGGCA 57.022 37.500 9.14 0.00 46.86 4.92
3918 5231 7.372451 GTGTACTTTAGAATACACATGGCAA 57.628 36.000 9.14 0.00 46.86 4.52
3919 5232 7.985476 GTGTACTTTAGAATACACATGGCAAT 58.015 34.615 9.14 0.00 46.86 3.56
3920 5233 8.458843 GTGTACTTTAGAATACACATGGCAATT 58.541 33.333 9.14 0.00 46.86 2.32
3921 5234 9.019656 TGTACTTTAGAATACACATGGCAATTT 57.980 29.630 0.00 0.00 0.00 1.82
3922 5235 9.503427 GTACTTTAGAATACACATGGCAATTTC 57.497 33.333 0.00 0.00 0.00 2.17
3923 5236 8.353423 ACTTTAGAATACACATGGCAATTTCT 57.647 30.769 0.00 1.89 0.00 2.52
3924 5237 8.806146 ACTTTAGAATACACATGGCAATTTCTT 58.194 29.630 0.00 0.00 0.00 2.52
3925 5238 9.643693 CTTTAGAATACACATGGCAATTTCTTT 57.356 29.630 0.00 0.00 0.00 2.52
3926 5239 9.995003 TTTAGAATACACATGGCAATTTCTTTT 57.005 25.926 0.00 0.00 0.00 2.27
3929 5242 9.023962 AGAATACACATGGCAATTTCTTTTAGA 57.976 29.630 0.00 0.00 0.00 2.10
3930 5243 9.638239 GAATACACATGGCAATTTCTTTTAGAA 57.362 29.630 0.00 0.00 31.28 2.10
3931 5244 9.995003 AATACACATGGCAATTTCTTTTAGAAA 57.005 25.926 4.51 4.51 46.89 2.52
3932 5245 7.713764 ACACATGGCAATTTCTTTTAGAAAC 57.286 32.000 4.14 0.00 45.83 2.78
3933 5246 7.271511 ACACATGGCAATTTCTTTTAGAAACA 58.728 30.769 4.14 0.00 45.83 2.83
3934 5247 7.933033 ACACATGGCAATTTCTTTTAGAAACAT 59.067 29.630 4.14 1.77 45.83 2.71
3935 5248 8.225107 CACATGGCAATTTCTTTTAGAAACATG 58.775 33.333 18.78 18.78 45.83 3.21
3936 5249 7.933033 ACATGGCAATTTCTTTTAGAAACATGT 59.067 29.630 19.58 19.58 45.83 3.21
3937 5250 7.712264 TGGCAATTTCTTTTAGAAACATGTG 57.288 32.000 0.00 3.00 45.83 3.21
3938 5251 6.705381 TGGCAATTTCTTTTAGAAACATGTGG 59.295 34.615 0.00 0.00 45.83 4.17
3939 5252 6.347644 GGCAATTTCTTTTAGAAACATGTGGC 60.348 38.462 0.00 8.59 45.83 5.01
3940 5253 6.202570 GCAATTTCTTTTAGAAACATGTGGCA 59.797 34.615 0.00 0.00 45.83 4.92
3941 5254 7.254727 GCAATTTCTTTTAGAAACATGTGGCAA 60.255 33.333 0.00 0.00 45.83 4.52
3942 5255 8.610896 CAATTTCTTTTAGAAACATGTGGCAAA 58.389 29.630 0.00 0.00 45.83 3.68
3943 5256 8.907222 ATTTCTTTTAGAAACATGTGGCAAAT 57.093 26.923 0.00 0.00 45.83 2.32
3944 5257 8.729805 TTTCTTTTAGAAACATGTGGCAAATT 57.270 26.923 0.00 0.00 39.13 1.82
3945 5258 7.712264 TCTTTTAGAAACATGTGGCAAATTG 57.288 32.000 0.00 0.00 0.00 2.32
3946 5259 7.271511 TCTTTTAGAAACATGTGGCAAATTGT 58.728 30.769 0.00 0.00 0.00 2.71
3947 5260 6.841443 TTTAGAAACATGTGGCAAATTGTG 57.159 33.333 0.00 0.00 0.00 3.33
3948 5261 3.731089 AGAAACATGTGGCAAATTGTGG 58.269 40.909 0.00 0.00 0.00 4.17
3966 5279 2.531522 GGCAACAAAAGGATGTTGCT 57.468 45.000 31.70 0.00 36.55 3.91
3967 5280 2.137523 GGCAACAAAAGGATGTTGCTG 58.862 47.619 31.70 9.75 36.55 4.41
3968 5281 2.483538 GGCAACAAAAGGATGTTGCTGT 60.484 45.455 31.70 0.00 36.55 4.40
3969 5282 2.540931 GCAACAAAAGGATGTTGCTGTG 59.459 45.455 28.31 5.13 36.55 3.66
3970 5283 3.784338 CAACAAAAGGATGTTGCTGTGT 58.216 40.909 7.17 0.00 36.55 3.72
3971 5284 4.183101 CAACAAAAGGATGTTGCTGTGTT 58.817 39.130 7.17 0.00 36.55 3.32
3972 5285 4.045636 ACAAAAGGATGTTGCTGTGTTC 57.954 40.909 0.00 0.00 36.55 3.18
3973 5286 3.044986 CAAAAGGATGTTGCTGTGTTCG 58.955 45.455 0.00 0.00 0.00 3.95
3974 5287 0.593128 AAGGATGTTGCTGTGTTCGC 59.407 50.000 0.00 0.00 0.00 4.70
3975 5288 0.250467 AGGATGTTGCTGTGTTCGCT 60.250 50.000 0.00 0.00 0.00 4.93
3976 5289 1.001974 AGGATGTTGCTGTGTTCGCTA 59.998 47.619 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.453572 TGCTTCTTCTTACAATTATCATCTTGT 57.546 29.630 0.00 0.00 38.95 3.16
3 4 9.713740 GTGCTTCTTCTTACAATTATCATCTTG 57.286 33.333 0.00 0.00 0.00 3.02
4 5 9.678260 AGTGCTTCTTCTTACAATTATCATCTT 57.322 29.630 0.00 0.00 0.00 2.40
5 6 9.107177 CAGTGCTTCTTCTTACAATTATCATCT 57.893 33.333 0.00 0.00 0.00 2.90
6 7 9.102757 TCAGTGCTTCTTCTTACAATTATCATC 57.897 33.333 0.00 0.00 0.00 2.92
7 8 9.624373 ATCAGTGCTTCTTCTTACAATTATCAT 57.376 29.630 0.00 0.00 0.00 2.45
8 9 9.453572 AATCAGTGCTTCTTCTTACAATTATCA 57.546 29.630 0.00 0.00 0.00 2.15
11 12 9.383519 CCTAATCAGTGCTTCTTCTTACAATTA 57.616 33.333 0.00 0.00 0.00 1.40
12 13 7.337942 CCCTAATCAGTGCTTCTTCTTACAATT 59.662 37.037 0.00 0.00 0.00 2.32
13 14 6.825721 CCCTAATCAGTGCTTCTTCTTACAAT 59.174 38.462 0.00 0.00 0.00 2.71
14 15 6.173339 CCCTAATCAGTGCTTCTTCTTACAA 58.827 40.000 0.00 0.00 0.00 2.41
15 16 5.338381 CCCCTAATCAGTGCTTCTTCTTACA 60.338 44.000 0.00 0.00 0.00 2.41
16 17 5.119694 CCCCTAATCAGTGCTTCTTCTTAC 58.880 45.833 0.00 0.00 0.00 2.34
17 18 4.164221 CCCCCTAATCAGTGCTTCTTCTTA 59.836 45.833 0.00 0.00 0.00 2.10
18 19 3.054065 CCCCCTAATCAGTGCTTCTTCTT 60.054 47.826 0.00 0.00 0.00 2.52
19 20 2.507471 CCCCCTAATCAGTGCTTCTTCT 59.493 50.000 0.00 0.00 0.00 2.85
20 21 2.239907 ACCCCCTAATCAGTGCTTCTTC 59.760 50.000 0.00 0.00 0.00 2.87
21 22 2.279173 ACCCCCTAATCAGTGCTTCTT 58.721 47.619 0.00 0.00 0.00 2.52
22 23 1.972588 ACCCCCTAATCAGTGCTTCT 58.027 50.000 0.00 0.00 0.00 2.85
23 24 2.808906 AACCCCCTAATCAGTGCTTC 57.191 50.000 0.00 0.00 0.00 3.86
24 25 4.202631 TGTTAAACCCCCTAATCAGTGCTT 60.203 41.667 0.00 0.00 0.00 3.91
25 26 3.332485 TGTTAAACCCCCTAATCAGTGCT 59.668 43.478 0.00 0.00 0.00 4.40
26 27 3.692690 TGTTAAACCCCCTAATCAGTGC 58.307 45.455 0.00 0.00 0.00 4.40
27 28 4.887655 GGATGTTAAACCCCCTAATCAGTG 59.112 45.833 0.00 0.00 0.00 3.66
28 29 4.542525 TGGATGTTAAACCCCCTAATCAGT 59.457 41.667 0.00 0.00 0.00 3.41
29 30 5.124036 TGGATGTTAAACCCCCTAATCAG 57.876 43.478 0.00 0.00 0.00 2.90
30 31 5.194740 TGATGGATGTTAAACCCCCTAATCA 59.805 40.000 0.00 0.00 0.00 2.57
31 32 5.701224 TGATGGATGTTAAACCCCCTAATC 58.299 41.667 0.00 0.00 0.00 1.75
32 33 5.742562 TGATGGATGTTAAACCCCCTAAT 57.257 39.130 0.00 0.00 0.00 1.73
33 34 5.538082 TTGATGGATGTTAAACCCCCTAA 57.462 39.130 0.00 0.00 0.00 2.69
34 35 5.742562 ATTGATGGATGTTAAACCCCCTA 57.257 39.130 0.00 0.00 0.00 3.53
35 36 4.625225 ATTGATGGATGTTAAACCCCCT 57.375 40.909 0.00 0.00 0.00 4.79
36 37 5.304357 CCTAATTGATGGATGTTAAACCCCC 59.696 44.000 0.00 0.00 0.00 5.40
37 38 5.221441 GCCTAATTGATGGATGTTAAACCCC 60.221 44.000 0.00 0.00 0.00 4.95
38 39 5.362430 TGCCTAATTGATGGATGTTAAACCC 59.638 40.000 0.00 0.00 0.00 4.11
39 40 6.463995 TGCCTAATTGATGGATGTTAAACC 57.536 37.500 0.00 0.00 0.00 3.27
42 43 9.023962 GGATTATGCCTAATTGATGGATGTTAA 57.976 33.333 0.00 0.00 0.00 2.01
43 44 7.615365 GGGATTATGCCTAATTGATGGATGTTA 59.385 37.037 0.00 0.00 0.00 2.41
44 45 6.438425 GGGATTATGCCTAATTGATGGATGTT 59.562 38.462 0.00 0.00 0.00 2.71
45 46 5.954150 GGGATTATGCCTAATTGATGGATGT 59.046 40.000 0.00 0.00 0.00 3.06
46 47 6.096423 CAGGGATTATGCCTAATTGATGGATG 59.904 42.308 4.61 0.00 35.31 3.51
47 48 6.192773 CAGGGATTATGCCTAATTGATGGAT 58.807 40.000 4.61 0.00 35.31 3.41
48 49 5.573219 CAGGGATTATGCCTAATTGATGGA 58.427 41.667 4.61 0.00 35.31 3.41
49 50 4.159135 GCAGGGATTATGCCTAATTGATGG 59.841 45.833 4.61 0.00 35.31 3.51
50 51 5.014858 AGCAGGGATTATGCCTAATTGATG 58.985 41.667 4.61 0.00 44.97 3.07
51 52 5.266709 AGCAGGGATTATGCCTAATTGAT 57.733 39.130 4.61 0.00 44.97 2.57
52 53 4.729552 AGCAGGGATTATGCCTAATTGA 57.270 40.909 4.61 0.00 44.97 2.57
53 54 5.279156 GGAAAGCAGGGATTATGCCTAATTG 60.279 44.000 4.61 0.00 44.97 2.32
54 55 4.835056 GGAAAGCAGGGATTATGCCTAATT 59.165 41.667 4.61 0.40 44.97 1.40
55 56 4.411013 GGAAAGCAGGGATTATGCCTAAT 58.589 43.478 4.61 0.00 44.97 1.73
56 57 3.436470 GGGAAAGCAGGGATTATGCCTAA 60.436 47.826 4.61 0.00 44.97 2.69
57 58 2.108250 GGGAAAGCAGGGATTATGCCTA 59.892 50.000 4.61 0.00 44.97 3.93
58 59 1.133356 GGGAAAGCAGGGATTATGCCT 60.133 52.381 0.00 0.00 44.97 4.75
59 60 1.133356 AGGGAAAGCAGGGATTATGCC 60.133 52.381 0.00 0.00 44.97 4.40
60 61 2.158549 AGAGGGAAAGCAGGGATTATGC 60.159 50.000 0.00 0.00 44.18 3.14
61 62 3.872459 AGAGGGAAAGCAGGGATTATG 57.128 47.619 0.00 0.00 0.00 1.90
62 63 4.104897 GGTTAGAGGGAAAGCAGGGATTAT 59.895 45.833 0.00 0.00 0.00 1.28
63 64 3.458487 GGTTAGAGGGAAAGCAGGGATTA 59.542 47.826 0.00 0.00 0.00 1.75
64 65 2.242452 GGTTAGAGGGAAAGCAGGGATT 59.758 50.000 0.00 0.00 0.00 3.01
65 66 1.847088 GGTTAGAGGGAAAGCAGGGAT 59.153 52.381 0.00 0.00 0.00 3.85
66 67 1.286248 GGTTAGAGGGAAAGCAGGGA 58.714 55.000 0.00 0.00 0.00 4.20
67 68 0.991920 TGGTTAGAGGGAAAGCAGGG 59.008 55.000 0.00 0.00 31.22 4.45
68 69 1.340114 GGTGGTTAGAGGGAAAGCAGG 60.340 57.143 0.00 0.00 35.21 4.85
69 70 1.676014 CGGTGGTTAGAGGGAAAGCAG 60.676 57.143 0.00 0.00 35.21 4.24
70 71 0.323629 CGGTGGTTAGAGGGAAAGCA 59.676 55.000 0.00 0.00 32.28 3.91
71 72 0.611714 TCGGTGGTTAGAGGGAAAGC 59.388 55.000 0.00 0.00 0.00 3.51
72 73 1.403780 CGTCGGTGGTTAGAGGGAAAG 60.404 57.143 0.00 0.00 0.00 2.62
73 74 0.604578 CGTCGGTGGTTAGAGGGAAA 59.395 55.000 0.00 0.00 0.00 3.13
74 75 0.251297 TCGTCGGTGGTTAGAGGGAA 60.251 55.000 0.00 0.00 0.00 3.97
75 76 0.033796 ATCGTCGGTGGTTAGAGGGA 60.034 55.000 0.00 0.00 0.00 4.20
76 77 0.822164 AATCGTCGGTGGTTAGAGGG 59.178 55.000 0.00 0.00 0.00 4.30
77 78 1.922570 CAATCGTCGGTGGTTAGAGG 58.077 55.000 0.00 0.00 0.00 3.69
78 79 1.135083 AGCAATCGTCGGTGGTTAGAG 60.135 52.381 0.00 0.00 0.00 2.43
79 80 0.892755 AGCAATCGTCGGTGGTTAGA 59.107 50.000 0.00 0.00 0.00 2.10
80 81 2.572191 TAGCAATCGTCGGTGGTTAG 57.428 50.000 6.81 0.00 0.00 2.34
81 82 3.530265 AATAGCAATCGTCGGTGGTTA 57.470 42.857 6.81 0.00 0.00 2.85
82 83 2.396590 AATAGCAATCGTCGGTGGTT 57.603 45.000 6.81 0.00 0.00 3.67
83 84 2.006888 CAAATAGCAATCGTCGGTGGT 58.993 47.619 6.74 6.74 0.00 4.16
84 85 1.330521 CCAAATAGCAATCGTCGGTGG 59.669 52.381 0.00 0.00 0.00 4.61
85 86 1.330521 CCCAAATAGCAATCGTCGGTG 59.669 52.381 0.00 0.00 0.00 4.94
86 87 1.663695 CCCAAATAGCAATCGTCGGT 58.336 50.000 0.00 0.00 0.00 4.69
87 88 0.307760 GCCCAAATAGCAATCGTCGG 59.692 55.000 0.00 0.00 0.00 4.79
88 89 1.261619 GAGCCCAAATAGCAATCGTCG 59.738 52.381 0.00 0.00 0.00 5.12
89 90 1.604278 GGAGCCCAAATAGCAATCGTC 59.396 52.381 0.00 0.00 0.00 4.20
90 91 1.212935 AGGAGCCCAAATAGCAATCGT 59.787 47.619 0.00 0.00 0.00 3.73
91 92 1.605710 CAGGAGCCCAAATAGCAATCG 59.394 52.381 0.00 0.00 0.00 3.34
92 93 1.339291 GCAGGAGCCCAAATAGCAATC 59.661 52.381 0.00 0.00 33.58 2.67
93 94 1.063417 AGCAGGAGCCCAAATAGCAAT 60.063 47.619 0.00 0.00 43.56 3.56
94 95 0.332632 AGCAGGAGCCCAAATAGCAA 59.667 50.000 0.00 0.00 43.56 3.91
95 96 0.332632 AAGCAGGAGCCCAAATAGCA 59.667 50.000 0.00 0.00 43.56 3.49
96 97 1.028130 GAAGCAGGAGCCCAAATAGC 58.972 55.000 0.00 0.00 43.56 2.97
97 98 1.303309 CGAAGCAGGAGCCCAAATAG 58.697 55.000 0.00 0.00 43.56 1.73
98 99 0.618458 ACGAAGCAGGAGCCCAAATA 59.382 50.000 0.00 0.00 43.56 1.40
99 100 0.678048 GACGAAGCAGGAGCCCAAAT 60.678 55.000 0.00 0.00 43.56 2.32
100 101 1.302511 GACGAAGCAGGAGCCCAAA 60.303 57.895 0.00 0.00 43.56 3.28
101 102 1.768684 AAGACGAAGCAGGAGCCCAA 61.769 55.000 0.00 0.00 43.56 4.12
102 103 1.768684 AAAGACGAAGCAGGAGCCCA 61.769 55.000 0.00 0.00 43.56 5.36
135 138 6.370453 AGTAGAACACAAACCCTAACCAAAT 58.630 36.000 0.00 0.00 0.00 2.32
204 207 0.765135 TGAACGGGGGTTGAGAGGAA 60.765 55.000 0.00 0.00 0.00 3.36
210 213 2.833227 CACCTGAACGGGGGTTGA 59.167 61.111 4.64 0.00 36.97 3.18
222 225 2.656646 TGCTAGACGCACCACCTG 59.343 61.111 0.00 0.00 45.47 4.00
232 235 4.118410 CACACTCTCCAATGATGCTAGAC 58.882 47.826 0.00 0.00 0.00 2.59
244 247 2.239400 CACACCTCTACACACTCTCCA 58.761 52.381 0.00 0.00 0.00 3.86
252 255 3.440872 CCACTAGAGACACACCTCTACAC 59.559 52.174 0.00 0.00 42.93 2.90
269 272 2.965831 CCAAATCCCTCGAGATCCACTA 59.034 50.000 15.71 0.00 0.00 2.74
272 275 1.762957 GACCAAATCCCTCGAGATCCA 59.237 52.381 15.71 0.00 0.00 3.41
298 301 0.241213 CGAAGACTCGCTGAAGACCA 59.759 55.000 0.00 0.00 38.45 4.02
310 313 7.488471 CGAATTAAGAAGTTATCCACGAAGACT 59.512 37.037 0.00 0.00 0.00 3.24
311 314 7.275123 ACGAATTAAGAAGTTATCCACGAAGAC 59.725 37.037 0.00 0.00 0.00 3.01
317 320 7.360575 ACACACGAATTAAGAAGTTATCCAC 57.639 36.000 0.00 0.00 0.00 4.02
326 329 7.556733 AACCTGTAAACACACGAATTAAGAA 57.443 32.000 0.00 0.00 0.00 2.52
331 334 6.459985 GGGTTTAACCTGTAAACACACGAATT 60.460 38.462 14.27 0.00 39.79 2.17
332 335 5.008911 GGGTTTAACCTGTAAACACACGAAT 59.991 40.000 14.27 0.00 39.79 3.34
354 357 9.712305 ATTACAGAAAATCATAGATCGTAAGGG 57.288 33.333 0.00 0.00 38.47 3.95
359 362 6.366332 GCCGATTACAGAAAATCATAGATCGT 59.634 38.462 0.00 0.00 35.93 3.73
367 370 3.342719 TGCTGCCGATTACAGAAAATCA 58.657 40.909 0.00 0.00 37.32 2.57
378 381 2.076863 GAACAACTACTGCTGCCGATT 58.923 47.619 0.00 0.00 0.00 3.34
385 388 1.873903 CGCACCAGAACAACTACTGCT 60.874 52.381 0.00 0.00 31.75 4.24
434 438 8.004087 ACTTATTGTAGTAGATAGTGCGGAAA 57.996 34.615 0.00 0.00 0.00 3.13
590 594 9.988350 CGCAGTACAACTATCAGAAAAATATTT 57.012 29.630 0.00 0.00 0.00 1.40
591 595 9.378551 TCGCAGTACAACTATCAGAAAAATATT 57.621 29.630 0.00 0.00 0.00 1.28
592 596 8.942338 TCGCAGTACAACTATCAGAAAAATAT 57.058 30.769 0.00 0.00 0.00 1.28
593 597 8.817100 CATCGCAGTACAACTATCAGAAAAATA 58.183 33.333 0.00 0.00 0.00 1.40
594 598 7.549134 TCATCGCAGTACAACTATCAGAAAAAT 59.451 33.333 0.00 0.00 0.00 1.82
595 599 6.871492 TCATCGCAGTACAACTATCAGAAAAA 59.129 34.615 0.00 0.00 0.00 1.94
596 600 6.394809 TCATCGCAGTACAACTATCAGAAAA 58.605 36.000 0.00 0.00 0.00 2.29
597 601 5.961272 TCATCGCAGTACAACTATCAGAAA 58.039 37.500 0.00 0.00 0.00 2.52
598 602 5.576447 TCATCGCAGTACAACTATCAGAA 57.424 39.130 0.00 0.00 0.00 3.02
599 603 5.560953 CGATCATCGCAGTACAACTATCAGA 60.561 44.000 0.00 0.00 31.14 3.27
600 604 4.614702 CGATCATCGCAGTACAACTATCAG 59.385 45.833 0.00 0.00 31.14 2.90
601 605 4.274950 TCGATCATCGCAGTACAACTATCA 59.725 41.667 0.80 0.00 40.21 2.15
602 606 4.784329 TCGATCATCGCAGTACAACTATC 58.216 43.478 0.80 0.00 40.21 2.08
603 607 4.830826 TCGATCATCGCAGTACAACTAT 57.169 40.909 0.80 0.00 40.21 2.12
604 608 4.274950 TCATCGATCATCGCAGTACAACTA 59.725 41.667 0.80 0.00 40.21 2.24
605 609 3.066760 TCATCGATCATCGCAGTACAACT 59.933 43.478 0.80 0.00 40.21 3.16
606 610 3.372060 TCATCGATCATCGCAGTACAAC 58.628 45.455 0.80 0.00 40.21 3.32
607 611 3.708563 TCATCGATCATCGCAGTACAA 57.291 42.857 0.80 0.00 40.21 2.41
608 612 3.253188 TCATCATCGATCATCGCAGTACA 59.747 43.478 0.80 0.00 40.21 2.90
622 626 9.023967 GGAAAACCTTCAATTTATTCATCATCG 57.976 33.333 0.00 0.00 32.75 3.84
654 1900 0.943835 GGGCCAAAATCACGTTGTGC 60.944 55.000 4.39 0.00 32.98 4.57
660 1906 0.893270 TGGACTGGGCCAAAATCACG 60.893 55.000 8.04 0.00 34.31 4.35
723 1970 1.137594 TAGGGGGTTTGTGGGACCAG 61.138 60.000 0.00 0.00 38.98 4.00
856 2108 2.644299 TGGATGCCTTTGGAGAAGAAGA 59.356 45.455 0.00 0.00 0.00 2.87
858 2110 2.108075 TGTGGATGCCTTTGGAGAAGAA 59.892 45.455 0.00 0.00 0.00 2.52
859 2111 1.704628 TGTGGATGCCTTTGGAGAAGA 59.295 47.619 0.00 0.00 0.00 2.87
860 2112 1.815003 GTGTGGATGCCTTTGGAGAAG 59.185 52.381 0.00 0.00 0.00 2.85
861 2113 1.547675 GGTGTGGATGCCTTTGGAGAA 60.548 52.381 0.00 0.00 0.00 2.87
862 2114 0.038166 GGTGTGGATGCCTTTGGAGA 59.962 55.000 0.00 0.00 0.00 3.71
863 2115 0.038744 AGGTGTGGATGCCTTTGGAG 59.961 55.000 0.00 0.00 0.00 3.86
864 2116 0.038166 GAGGTGTGGATGCCTTTGGA 59.962 55.000 0.00 0.00 34.81 3.53
865 2117 0.967380 GGAGGTGTGGATGCCTTTGG 60.967 60.000 0.00 0.00 34.81 3.28
866 2118 0.967380 GGGAGGTGTGGATGCCTTTG 60.967 60.000 0.00 0.00 34.81 2.77
867 2119 1.142688 AGGGAGGTGTGGATGCCTTT 61.143 55.000 0.00 0.00 32.63 3.11
870 2122 1.997874 AGAGGGAGGTGTGGATGCC 60.998 63.158 0.00 0.00 0.00 4.40
874 2127 2.997315 CGCAGAGGGAGGTGTGGA 60.997 66.667 0.00 0.00 0.00 4.02
899 2152 1.079819 GCACAAGCGAGTAGAGGCA 60.080 57.895 0.00 0.00 0.00 4.75
935 2188 0.106918 TCCTCTCCTCTTCTCGCCTC 60.107 60.000 0.00 0.00 0.00 4.70
940 2193 2.092429 TCTGCTCTCCTCTCCTCTTCTC 60.092 54.545 0.00 0.00 0.00 2.87
958 2211 3.522731 CCGTCGCCTCCTCCTCTG 61.523 72.222 0.00 0.00 0.00 3.35
972 2225 1.461559 CTACCGAACTTCTCCTCCGT 58.538 55.000 0.00 0.00 0.00 4.69
986 2239 1.251527 CCCCATCGATCTCCCTACCG 61.252 65.000 0.00 0.00 0.00 4.02
1224 2484 4.705746 GGTTCCACCGCACATACA 57.294 55.556 0.00 0.00 0.00 2.29
1270 2530 6.598753 TTTTTCTCATGCTATACTAACGGC 57.401 37.500 0.00 0.00 0.00 5.68
1301 2567 8.853126 TGAAAGAAAGCATATGGATAATTCAGG 58.147 33.333 4.56 0.00 0.00 3.86
1364 2630 2.348411 CCCAATTGGTACCAGGCTAG 57.652 55.000 22.91 4.49 0.00 3.42
1394 2660 5.163513 CACAGGTACAAAATCAATTGCTCC 58.836 41.667 0.00 0.00 33.52 4.70
1397 2663 3.679502 GGCACAGGTACAAAATCAATTGC 59.320 43.478 0.00 0.00 33.52 3.56
1544 2812 4.636206 CCAGGACAACTTCTAATAGCAACC 59.364 45.833 0.00 0.00 0.00 3.77
1644 2915 2.434884 CTGGATCGCTGCCAACGT 60.435 61.111 0.00 0.00 34.44 3.99
1668 2939 5.075493 AGAAGCCATATTGCAATAGAAGGG 58.925 41.667 22.76 20.00 0.00 3.95
1740 3011 7.432059 ACCTCTACTAACAGAAGTACAAACAC 58.568 38.462 0.00 0.00 0.00 3.32
1762 3033 5.137551 AGTAAGCAACCACAACATTAACCT 58.862 37.500 0.00 0.00 0.00 3.50
1816 3087 8.122472 TCATCAGCGATATAATCCTTACTTCA 57.878 34.615 0.00 0.00 0.00 3.02
1971 3242 7.833285 AAGGAAATAACAGCCAAAGAGTAAA 57.167 32.000 0.00 0.00 0.00 2.01
1973 3244 7.833285 AAAAGGAAATAACAGCCAAAGAGTA 57.167 32.000 0.00 0.00 0.00 2.59
1996 3267 7.144661 AGCATTTTATTCATGTGACGACAAAA 58.855 30.769 0.00 0.00 35.11 2.44
2080 3351 6.964807 TGGCATACATAAATCATCAGCTTT 57.035 33.333 0.00 0.00 0.00 3.51
2172 3443 1.004277 GGTCTCTGTCGTTGCTGTCG 61.004 60.000 0.00 0.00 0.00 4.35
2350 3621 6.312399 TCAGGCTGTAAAGTTTTACACATG 57.688 37.500 15.27 14.87 45.70 3.21
2361 3632 8.729805 AAGATAAGATTCTTCAGGCTGTAAAG 57.270 34.615 15.27 11.77 29.99 1.85
2400 3671 9.193806 ACCATGTGCAATAAGATAAGATTCTTT 57.806 29.630 3.86 0.00 37.20 2.52
2402 3673 9.277783 GTACCATGTGCAATAAGATAAGATTCT 57.722 33.333 0.00 0.00 0.00 2.40
2435 3706 6.106673 CGGGACACAGTATTATTGATATCCC 58.893 44.000 0.00 12.73 38.99 3.85
2589 3860 6.266786 TGACTTCACAGGTAGACATAGACAAA 59.733 38.462 0.00 0.00 0.00 2.83
2592 3863 5.416326 ACTGACTTCACAGGTAGACATAGAC 59.584 44.000 0.00 0.00 41.59 2.59
2602 3873 3.305720 TGTAGGAACTGACTTCACAGGT 58.694 45.455 0.00 0.00 41.52 4.00
2846 4129 5.880332 GGAAAGTAACACCATGCTTATCAGA 59.120 40.000 0.00 0.00 0.00 3.27
2856 4139 5.123344 GCAATAGAACGGAAAGTAACACCAT 59.877 40.000 0.00 0.00 0.00 3.55
2871 4154 7.095439 GCACTCTGAATATACCTGCAATAGAAC 60.095 40.741 0.00 0.00 0.00 3.01
2878 4161 4.445453 CAAGCACTCTGAATATACCTGCA 58.555 43.478 0.00 0.00 0.00 4.41
2879 4162 3.249559 GCAAGCACTCTGAATATACCTGC 59.750 47.826 0.00 0.00 0.00 4.85
2913 4196 1.880941 ACCCTTCATACAGACCCTCC 58.119 55.000 0.00 0.00 0.00 4.30
2952 4235 7.070696 TGTTAGATAGAAACCTTGCTGGCTATA 59.929 37.037 0.00 0.00 40.22 1.31
3035 4320 8.667076 TGGAAAAAGTTTGTACTACTAGAACC 57.333 34.615 0.00 2.36 33.17 3.62
3040 4326 9.101655 GAACACTGGAAAAAGTTTGTACTACTA 57.898 33.333 0.00 0.00 33.17 1.82
3047 4333 4.021544 TGCTGAACACTGGAAAAAGTTTGT 60.022 37.500 0.00 0.00 0.00 2.83
3051 4337 3.068590 CCATGCTGAACACTGGAAAAAGT 59.931 43.478 0.00 0.00 31.99 2.66
3053 4339 3.030291 ACCATGCTGAACACTGGAAAAA 58.970 40.909 0.00 0.00 33.58 1.94
3057 4343 1.608055 CAACCATGCTGAACACTGGA 58.392 50.000 0.00 0.00 33.58 3.86
3072 4362 8.623903 TCTGAATATCAAAGTCATAATGCAACC 58.376 33.333 0.00 0.00 0.00 3.77
3092 4382 9.516546 AGTGTCATGCATCATTTATATCTGAAT 57.483 29.630 0.00 0.00 0.00 2.57
3099 4389 9.394767 ACTTGTTAGTGTCATGCATCATTTATA 57.605 29.630 0.00 0.00 31.99 0.98
3140 4430 1.074405 AGCTTTCAGGACTGCAATCCA 59.926 47.619 17.91 0.00 41.73 3.41
3177 4467 2.670934 CCAGTTGCTTCTGCGGCT 60.671 61.111 0.00 0.00 43.34 5.52
3193 4483 1.675641 AGTCATTTGTCCAGCCGCC 60.676 57.895 0.00 0.00 0.00 6.13
3233 4523 0.815213 TGTCAACACTCTGGCAGCAC 60.815 55.000 10.34 0.00 0.00 4.40
3381 4684 2.953284 ATCAGGGCAGGATCTTCATG 57.047 50.000 0.00 0.00 0.00 3.07
3386 4692 2.309755 TCACAAAATCAGGGCAGGATCT 59.690 45.455 0.00 0.00 0.00 2.75
3399 4705 6.403636 GCAGAATACATCTCGGTTCACAAAAT 60.404 38.462 0.00 0.00 35.73 1.82
3413 4719 4.708868 TTAATCACGCGCAGAATACATC 57.291 40.909 5.73 0.00 0.00 3.06
3460 4766 4.088213 GCAACGTTCGTTAACTAGAGACAG 59.912 45.833 10.18 0.00 33.15 3.51
3484 4790 1.822990 TCCTCAGATACCAACCACGTC 59.177 52.381 0.00 0.00 0.00 4.34
3490 4796 8.598041 AGATTACCATAATCCTCAGATACCAAC 58.402 37.037 5.20 0.00 30.42 3.77
3580 4886 9.181061 GCTATAAAACCCATAGAAACCTTACAA 57.819 33.333 0.00 0.00 0.00 2.41
3581 4887 8.554011 AGCTATAAAACCCATAGAAACCTTACA 58.446 33.333 0.00 0.00 0.00 2.41
3582 4888 8.975663 AGCTATAAAACCCATAGAAACCTTAC 57.024 34.615 0.00 0.00 0.00 2.34
3584 4890 8.999895 TCTAGCTATAAAACCCATAGAAACCTT 58.000 33.333 0.00 0.00 0.00 3.50
3585 4891 8.562949 TCTAGCTATAAAACCCATAGAAACCT 57.437 34.615 0.00 0.00 0.00 3.50
3586 4892 9.794719 AATCTAGCTATAAAACCCATAGAAACC 57.205 33.333 0.00 0.00 0.00 3.27
3664 4974 9.138596 GCTAAAGGGGTCCAATAATTATGTTTA 57.861 33.333 0.00 0.00 0.00 2.01
3665 4975 7.070696 GGCTAAAGGGGTCCAATAATTATGTTT 59.929 37.037 0.00 0.00 0.00 2.83
3683 4993 3.256631 AGTGAACATTTGCTGGCTAAAGG 59.743 43.478 0.00 0.00 0.00 3.11
3692 5002 0.400213 TCCCGGAGTGAACATTTGCT 59.600 50.000 0.73 0.00 0.00 3.91
3695 5005 1.955208 GCCATCCCGGAGTGAACATTT 60.955 52.381 0.73 0.00 36.56 2.32
3706 5016 1.737355 ATTCGCAAATGCCATCCCGG 61.737 55.000 0.00 0.00 37.91 5.73
3729 5042 5.431179 ACGACAGGAGTATTTGGGTAAAT 57.569 39.130 0.00 0.00 39.69 1.40
3730 5043 4.895668 ACGACAGGAGTATTTGGGTAAA 57.104 40.909 0.00 0.00 0.00 2.01
3733 5046 3.326880 AGAAACGACAGGAGTATTTGGGT 59.673 43.478 0.00 0.00 0.00 4.51
3734 5047 3.939066 AGAAACGACAGGAGTATTTGGG 58.061 45.455 0.00 0.00 0.00 4.12
3735 5048 7.611213 ATTTAGAAACGACAGGAGTATTTGG 57.389 36.000 0.00 0.00 0.00 3.28
3741 5054 8.968969 AGACTTATATTTAGAAACGACAGGAGT 58.031 33.333 0.00 0.00 0.00 3.85
3742 5055 9.804758 AAGACTTATATTTAGAAACGACAGGAG 57.195 33.333 0.00 0.00 0.00 3.69
3815 5128 8.604035 GCGAAATGAGTGAATCTACAATCTAAA 58.396 33.333 0.00 0.00 36.14 1.85
3816 5129 7.981789 AGCGAAATGAGTGAATCTACAATCTAA 59.018 33.333 0.00 0.00 36.14 2.10
3817 5130 7.492524 AGCGAAATGAGTGAATCTACAATCTA 58.507 34.615 0.00 0.00 36.14 1.98
3818 5131 6.344500 AGCGAAATGAGTGAATCTACAATCT 58.656 36.000 0.00 0.00 36.14 2.40
3819 5132 6.595772 AGCGAAATGAGTGAATCTACAATC 57.404 37.500 0.00 0.00 35.78 2.67
3820 5133 6.237942 CGAAGCGAAATGAGTGAATCTACAAT 60.238 38.462 0.00 0.00 0.00 2.71
3821 5134 5.062183 CGAAGCGAAATGAGTGAATCTACAA 59.938 40.000 0.00 0.00 0.00 2.41
3822 5135 4.562789 CGAAGCGAAATGAGTGAATCTACA 59.437 41.667 0.00 0.00 0.00 2.74
3823 5136 4.563184 ACGAAGCGAAATGAGTGAATCTAC 59.437 41.667 0.00 0.00 0.00 2.59
3824 5137 4.744570 ACGAAGCGAAATGAGTGAATCTA 58.255 39.130 0.00 0.00 0.00 1.98
3825 5138 3.589988 ACGAAGCGAAATGAGTGAATCT 58.410 40.909 0.00 0.00 0.00 2.40
3826 5139 3.999229 ACGAAGCGAAATGAGTGAATC 57.001 42.857 0.00 0.00 0.00 2.52
3827 5140 4.870426 ACATACGAAGCGAAATGAGTGAAT 59.130 37.500 11.59 0.00 31.99 2.57
3828 5141 4.242475 ACATACGAAGCGAAATGAGTGAA 58.758 39.130 11.59 0.00 31.99 3.18
3829 5142 3.845178 ACATACGAAGCGAAATGAGTGA 58.155 40.909 11.59 0.00 31.99 3.41
3830 5143 4.798907 ACTACATACGAAGCGAAATGAGTG 59.201 41.667 11.59 0.00 31.99 3.51
3831 5144 4.995124 ACTACATACGAAGCGAAATGAGT 58.005 39.130 11.59 8.65 31.99 3.41
3832 5145 4.441415 GGACTACATACGAAGCGAAATGAG 59.559 45.833 11.59 8.24 31.99 2.90
3833 5146 4.142337 TGGACTACATACGAAGCGAAATGA 60.142 41.667 11.59 0.06 31.99 2.57
3834 5147 4.109766 TGGACTACATACGAAGCGAAATG 58.890 43.478 0.00 0.00 33.06 2.32
3835 5148 4.380841 TGGACTACATACGAAGCGAAAT 57.619 40.909 0.00 0.00 0.00 2.17
3836 5149 3.853831 TGGACTACATACGAAGCGAAA 57.146 42.857 0.00 0.00 0.00 3.46
3837 5150 5.700722 ATATGGACTACATACGAAGCGAA 57.299 39.130 0.00 0.00 44.41 4.70
3838 5151 5.239963 TCAATATGGACTACATACGAAGCGA 59.760 40.000 0.00 0.00 44.41 4.93
3839 5152 5.458015 TCAATATGGACTACATACGAAGCG 58.542 41.667 0.00 0.00 44.41 4.68
3840 5153 7.709269 TTTCAATATGGACTACATACGAAGC 57.291 36.000 0.00 0.00 44.41 3.86
3841 5154 9.698309 AGATTTCAATATGGACTACATACGAAG 57.302 33.333 0.00 0.00 44.41 3.79
3867 5180 9.603921 CCGTTCCTAAATACAAGACCTTATAAA 57.396 33.333 0.00 0.00 0.00 1.40
3868 5181 8.206189 CCCGTTCCTAAATACAAGACCTTATAA 58.794 37.037 0.00 0.00 0.00 0.98
3869 5182 7.345392 ACCCGTTCCTAAATACAAGACCTTATA 59.655 37.037 0.00 0.00 0.00 0.98
3870 5183 6.157471 ACCCGTTCCTAAATACAAGACCTTAT 59.843 38.462 0.00 0.00 0.00 1.73
3871 5184 5.484998 ACCCGTTCCTAAATACAAGACCTTA 59.515 40.000 0.00 0.00 0.00 2.69
3872 5185 4.287845 ACCCGTTCCTAAATACAAGACCTT 59.712 41.667 0.00 0.00 0.00 3.50
3873 5186 3.842436 ACCCGTTCCTAAATACAAGACCT 59.158 43.478 0.00 0.00 0.00 3.85
3874 5187 3.937079 CACCCGTTCCTAAATACAAGACC 59.063 47.826 0.00 0.00 0.00 3.85
3875 5188 4.572909 ACACCCGTTCCTAAATACAAGAC 58.427 43.478 0.00 0.00 0.00 3.01
3876 5189 4.895668 ACACCCGTTCCTAAATACAAGA 57.104 40.909 0.00 0.00 0.00 3.02
3877 5190 5.727434 AGTACACCCGTTCCTAAATACAAG 58.273 41.667 0.00 0.00 0.00 3.16
3878 5191 5.743636 AGTACACCCGTTCCTAAATACAA 57.256 39.130 0.00 0.00 0.00 2.41
3879 5192 5.743636 AAGTACACCCGTTCCTAAATACA 57.256 39.130 0.00 0.00 0.00 2.29
3880 5193 7.547227 TCTAAAGTACACCCGTTCCTAAATAC 58.453 38.462 0.00 0.00 0.00 1.89
3881 5194 7.716799 TCTAAAGTACACCCGTTCCTAAATA 57.283 36.000 0.00 0.00 0.00 1.40
3882 5195 6.610075 TCTAAAGTACACCCGTTCCTAAAT 57.390 37.500 0.00 0.00 0.00 1.40
3883 5196 6.418057 TTCTAAAGTACACCCGTTCCTAAA 57.582 37.500 0.00 0.00 0.00 1.85
3884 5197 6.610075 ATTCTAAAGTACACCCGTTCCTAA 57.390 37.500 0.00 0.00 0.00 2.69
3885 5198 6.663093 TGTATTCTAAAGTACACCCGTTCCTA 59.337 38.462 0.00 0.00 0.00 2.94
3886 5199 5.481473 TGTATTCTAAAGTACACCCGTTCCT 59.519 40.000 0.00 0.00 0.00 3.36
3887 5200 5.578336 GTGTATTCTAAAGTACACCCGTTCC 59.422 44.000 0.00 0.00 42.93 3.62
3888 5201 6.158598 TGTGTATTCTAAAGTACACCCGTTC 58.841 40.000 11.72 0.00 46.27 3.95
3889 5202 6.100404 TGTGTATTCTAAAGTACACCCGTT 57.900 37.500 11.72 0.00 46.27 4.44
3890 5203 5.726980 TGTGTATTCTAAAGTACACCCGT 57.273 39.130 11.72 0.00 46.27 5.28
3891 5204 5.522460 CCATGTGTATTCTAAAGTACACCCG 59.478 44.000 11.72 4.57 46.27 5.28
3892 5205 5.296035 GCCATGTGTATTCTAAAGTACACCC 59.704 44.000 11.72 0.00 46.27 4.61
3893 5206 5.878116 TGCCATGTGTATTCTAAAGTACACC 59.122 40.000 11.72 0.00 46.27 4.16
3894 5207 6.978343 TGCCATGTGTATTCTAAAGTACAC 57.022 37.500 8.32 8.32 46.74 2.90
3895 5208 8.574251 AATTGCCATGTGTATTCTAAAGTACA 57.426 30.769 0.00 0.00 0.00 2.90
3896 5209 9.503427 GAAATTGCCATGTGTATTCTAAAGTAC 57.497 33.333 0.00 0.00 0.00 2.73
3897 5210 9.461312 AGAAATTGCCATGTGTATTCTAAAGTA 57.539 29.630 0.00 0.00 0.00 2.24
3898 5211 8.353423 AGAAATTGCCATGTGTATTCTAAAGT 57.647 30.769 0.00 0.00 0.00 2.66
3899 5212 9.643693 AAAGAAATTGCCATGTGTATTCTAAAG 57.356 29.630 0.00 0.00 0.00 1.85
3900 5213 9.995003 AAAAGAAATTGCCATGTGTATTCTAAA 57.005 25.926 0.00 0.00 0.00 1.85
3903 5216 9.023962 TCTAAAAGAAATTGCCATGTGTATTCT 57.976 29.630 0.00 0.00 0.00 2.40
3904 5217 9.638239 TTCTAAAAGAAATTGCCATGTGTATTC 57.362 29.630 0.00 0.00 29.99 1.75
3905 5218 9.995003 TTTCTAAAAGAAATTGCCATGTGTATT 57.005 25.926 0.00 0.00 39.13 1.89
3906 5219 9.423061 GTTTCTAAAAGAAATTGCCATGTGTAT 57.577 29.630 5.46 0.00 44.94 2.29
3907 5220 8.417106 TGTTTCTAAAAGAAATTGCCATGTGTA 58.583 29.630 5.46 0.00 44.94 2.90
3908 5221 7.271511 TGTTTCTAAAAGAAATTGCCATGTGT 58.728 30.769 5.46 0.00 44.94 3.72
3909 5222 7.712264 TGTTTCTAAAAGAAATTGCCATGTG 57.288 32.000 5.46 0.00 44.94 3.21
3910 5223 7.933033 ACATGTTTCTAAAAGAAATTGCCATGT 59.067 29.630 19.87 19.87 44.41 3.21
3911 5224 8.225107 CACATGTTTCTAAAAGAAATTGCCATG 58.775 33.333 19.06 19.06 44.94 3.66
3912 5225 7.388500 CCACATGTTTCTAAAAGAAATTGCCAT 59.612 33.333 0.00 2.42 44.94 4.40
3913 5226 6.705381 CCACATGTTTCTAAAAGAAATTGCCA 59.295 34.615 0.00 0.32 44.94 4.92
3914 5227 6.347644 GCCACATGTTTCTAAAAGAAATTGCC 60.348 38.462 0.00 0.00 44.94 4.52
3915 5228 6.202570 TGCCACATGTTTCTAAAAGAAATTGC 59.797 34.615 0.00 4.08 44.94 3.56
3916 5229 7.712264 TGCCACATGTTTCTAAAAGAAATTG 57.288 32.000 0.00 8.78 44.94 2.32
3917 5230 8.729805 TTTGCCACATGTTTCTAAAAGAAATT 57.270 26.923 0.00 0.00 44.94 1.82
3918 5231 8.907222 ATTTGCCACATGTTTCTAAAAGAAAT 57.093 26.923 0.00 0.00 44.94 2.17
3919 5232 8.610896 CAATTTGCCACATGTTTCTAAAAGAAA 58.389 29.630 0.00 0.00 41.51 2.52
3920 5233 7.768120 ACAATTTGCCACATGTTTCTAAAAGAA 59.232 29.630 0.00 0.00 31.28 2.52
3921 5234 7.224362 CACAATTTGCCACATGTTTCTAAAAGA 59.776 33.333 0.00 0.00 0.00 2.52
3922 5235 7.346695 CACAATTTGCCACATGTTTCTAAAAG 58.653 34.615 0.00 0.00 0.00 2.27
3923 5236 6.259608 CCACAATTTGCCACATGTTTCTAAAA 59.740 34.615 0.00 0.00 0.00 1.52
3924 5237 5.757320 CCACAATTTGCCACATGTTTCTAAA 59.243 36.000 0.00 0.00 0.00 1.85
3925 5238 5.295950 CCACAATTTGCCACATGTTTCTAA 58.704 37.500 0.00 0.00 0.00 2.10
3926 5239 4.798924 GCCACAATTTGCCACATGTTTCTA 60.799 41.667 0.00 0.00 0.00 2.10
3927 5240 3.731089 CCACAATTTGCCACATGTTTCT 58.269 40.909 0.00 0.00 0.00 2.52
3928 5241 2.223845 GCCACAATTTGCCACATGTTTC 59.776 45.455 0.00 0.00 0.00 2.78
3929 5242 2.220313 GCCACAATTTGCCACATGTTT 58.780 42.857 0.00 0.00 0.00 2.83
3930 5243 1.140452 TGCCACAATTTGCCACATGTT 59.860 42.857 0.00 0.00 0.00 2.71
3931 5244 0.757512 TGCCACAATTTGCCACATGT 59.242 45.000 0.00 0.00 0.00 3.21
3932 5245 1.532007 GTTGCCACAATTTGCCACATG 59.468 47.619 0.00 0.00 0.00 3.21
3933 5246 1.140452 TGTTGCCACAATTTGCCACAT 59.860 42.857 0.00 0.00 29.30 3.21
3934 5247 0.538584 TGTTGCCACAATTTGCCACA 59.461 45.000 0.00 0.00 31.54 4.17
3935 5248 1.661341 TTGTTGCCACAATTTGCCAC 58.339 45.000 0.00 0.00 38.03 5.01
3936 5249 2.408271 TTTGTTGCCACAATTTGCCA 57.592 40.000 3.93 0.00 42.66 4.92
3937 5250 2.033174 CCTTTTGTTGCCACAATTTGCC 59.967 45.455 3.93 0.00 42.66 4.52
3938 5251 2.941720 TCCTTTTGTTGCCACAATTTGC 59.058 40.909 3.93 0.00 42.66 3.68
3939 5252 4.575645 ACATCCTTTTGTTGCCACAATTTG 59.424 37.500 3.93 0.00 42.66 2.32
3940 5253 4.779696 ACATCCTTTTGTTGCCACAATTT 58.220 34.783 3.93 0.00 42.66 1.82
3941 5254 4.420522 ACATCCTTTTGTTGCCACAATT 57.579 36.364 3.93 0.00 42.66 2.32
3942 5255 4.128643 CAACATCCTTTTGTTGCCACAAT 58.871 39.130 3.93 0.00 46.95 2.71
3943 5256 3.529533 CAACATCCTTTTGTTGCCACAA 58.470 40.909 0.00 0.00 46.95 3.33
3944 5257 3.176552 CAACATCCTTTTGTTGCCACA 57.823 42.857 4.57 0.00 46.95 4.17
3950 5263 4.432712 GAACACAGCAACATCCTTTTGTT 58.567 39.130 0.00 0.00 40.39 2.83
3951 5264 3.489059 CGAACACAGCAACATCCTTTTGT 60.489 43.478 0.00 0.00 0.00 2.83
3952 5265 3.044986 CGAACACAGCAACATCCTTTTG 58.955 45.455 0.00 0.00 0.00 2.44
3953 5266 2.543653 GCGAACACAGCAACATCCTTTT 60.544 45.455 0.00 0.00 34.19 2.27
3954 5267 1.001378 GCGAACACAGCAACATCCTTT 60.001 47.619 0.00 0.00 34.19 3.11
3955 5268 0.593128 GCGAACACAGCAACATCCTT 59.407 50.000 0.00 0.00 34.19 3.36
3956 5269 0.250467 AGCGAACACAGCAACATCCT 60.250 50.000 0.00 0.00 37.01 3.24
3957 5270 1.438651 TAGCGAACACAGCAACATCC 58.561 50.000 0.00 0.00 37.01 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.