Multiple sequence alignment - TraesCS5D01G148900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G148900 chr5D 100.000 3690 0 0 1 3690 238071946 238075635 0.000000e+00 6815.0
1 TraesCS5D01G148900 chr5B 90.665 2903 125 70 65 2882 267762111 267759270 0.000000e+00 3725.0
2 TraesCS5D01G148900 chr5B 87.376 404 18 13 2983 3371 267759224 267758839 2.040000e-117 433.0
3 TraesCS5D01G148900 chr5B 90.854 164 14 1 3528 3690 380404649 380404812 6.200000e-53 219.0
4 TraesCS5D01G148900 chr5B 100.000 72 0 0 1 72 267773225 267773154 2.310000e-27 134.0
5 TraesCS5D01G148900 chr5B 92.857 56 2 1 2894 2949 267759276 267759223 3.050000e-11 80.5
6 TraesCS5D01G148900 chr5A 91.778 2250 86 37 749 2919 317240725 317238496 0.000000e+00 3038.0
7 TraesCS5D01G148900 chr5A 87.692 780 36 20 1 751 317241785 317241037 0.000000e+00 854.0
8 TraesCS5D01G148900 chr5A 91.094 393 18 10 2983 3371 317238475 317238096 1.960000e-142 516.0
9 TraesCS5D01G148900 chr4A 83.588 262 29 12 1426 1681 173630684 173630937 2.220000e-57 233.0
10 TraesCS5D01G148900 chr3B 93.548 155 10 0 3536 3690 323373353 323373507 7.970000e-57 231.0
11 TraesCS5D01G148900 chr4D 91.975 162 12 1 3530 3690 3381349 3381188 3.710000e-55 226.0
12 TraesCS5D01G148900 chr4D 82.375 261 34 10 1426 1681 305141316 305141569 2.230000e-52 217.0
13 TraesCS5D01G148900 chr4D 90.741 162 14 1 3530 3690 449457647 449457808 8.030000e-52 215.0
14 TraesCS5D01G148900 chr2D 91.975 162 12 1 3530 3690 14087320 14087481 3.710000e-55 226.0
15 TraesCS5D01G148900 chr7A 91.304 161 14 0 3530 3690 584381828 584381668 1.730000e-53 220.0
16 TraesCS5D01G148900 chr7A 90.361 166 14 2 3527 3690 189307996 189307831 2.230000e-52 217.0
17 TraesCS5D01G148900 chr7A 80.591 237 36 9 1444 1675 489163234 489163465 1.360000e-39 174.0
18 TraesCS5D01G148900 chr7A 74.890 227 44 11 1450 1671 430240738 430240956 1.410000e-14 91.6
19 TraesCS5D01G148900 chr2B 90.798 163 13 2 3530 3690 206286920 206287082 2.230000e-52 217.0
20 TraesCS5D01G148900 chr6A 90.683 161 15 0 3530 3690 148245907 148245747 8.030000e-52 215.0
21 TraesCS5D01G148900 chr4B 82.490 257 34 9 1426 1678 381374097 381374346 8.030000e-52 215.0
22 TraesCS5D01G148900 chr7D 79.835 243 39 9 1438 1675 438368643 438368880 6.340000e-38 169.0
23 TraesCS5D01G148900 chr7B 79.661 236 40 7 1444 1675 455272022 455271791 2.950000e-36 163.0
24 TraesCS5D01G148900 chr3D 78.423 241 50 2 1432 1671 39120472 39120233 4.930000e-34 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G148900 chr5D 238071946 238075635 3689 False 6815.000000 6815 100.000000 1 3690 1 chr5D.!!$F1 3689
1 TraesCS5D01G148900 chr5B 267758839 267762111 3272 True 1412.833333 3725 90.299333 65 3371 3 chr5B.!!$R2 3306
2 TraesCS5D01G148900 chr5A 317238096 317241785 3689 True 1469.333333 3038 90.188000 1 3371 3 chr5A.!!$R1 3370

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
195 205 0.445829 CATGCGCACACCACGAAATA 59.554 50.0 14.9 0.0 0.0 1.40 F
1093 1480 0.382515 CTTCCGACCGATCTCACTCC 59.617 60.0 0.0 0.0 0.0 3.85 F
1098 1485 0.955905 GACCGATCTCACTCCTAGCC 59.044 60.0 0.0 0.0 0.0 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1755 2172 0.172578 ACGCTCCGATCGAATGTTGA 59.827 50.0 18.66 2.77 0.00 3.18 R
2318 2739 0.032615 ACACCTCCTAGGGCTCTCAG 60.033 60.0 9.46 0.00 40.58 3.35 R
2979 3429 0.251341 GGACCAACATCCAACCAGCT 60.251 55.0 0.00 0.00 38.77 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
145 150 6.005583 ACTGAACAAGACATATTGCAACTG 57.994 37.500 0.00 5.19 33.28 3.16
192 202 4.024143 GCATGCGCACACCACGAA 62.024 61.111 14.90 0.00 38.36 3.85
193 203 2.636462 CATGCGCACACCACGAAA 59.364 55.556 14.90 0.00 0.00 3.46
194 204 1.209898 CATGCGCACACCACGAAAT 59.790 52.632 14.90 0.00 0.00 2.17
195 205 0.445829 CATGCGCACACCACGAAATA 59.554 50.000 14.90 0.00 0.00 1.40
196 206 1.063912 CATGCGCACACCACGAAATAT 59.936 47.619 14.90 0.00 0.00 1.28
197 207 1.160989 TGCGCACACCACGAAATATT 58.839 45.000 5.66 0.00 0.00 1.28
205 225 5.276868 GCACACCACGAAATATTAGCACTAG 60.277 44.000 0.00 0.00 0.00 2.57
229 249 5.404968 GTCATGCTGATGCTAAGCTAAGTAG 59.595 44.000 7.25 0.00 41.42 2.57
230 250 5.302823 TCATGCTGATGCTAAGCTAAGTAGA 59.697 40.000 7.25 0.00 41.42 2.59
236 256 7.173562 GCTGATGCTAAGCTAAGTAGAGTACTA 59.826 40.741 0.00 0.00 36.47 1.82
255 275 7.727181 AGTACTAACTTAATGGTAGGCTGATG 58.273 38.462 0.00 0.00 40.20 3.07
259 279 2.638480 TAATGGTAGGCTGATGTGGC 57.362 50.000 0.00 0.00 0.00 5.01
262 282 1.200760 TGGTAGGCTGATGTGGCTGT 61.201 55.000 0.00 0.00 42.92 4.40
263 283 0.745845 GGTAGGCTGATGTGGCTGTG 60.746 60.000 0.00 0.00 42.92 3.66
264 284 1.078214 TAGGCTGATGTGGCTGTGC 60.078 57.895 0.00 0.00 42.92 4.57
265 285 1.556373 TAGGCTGATGTGGCTGTGCT 61.556 55.000 0.00 0.00 42.92 4.40
266 286 1.078214 GGCTGATGTGGCTGTGCTA 60.078 57.895 0.00 0.00 0.00 3.49
267 287 1.094073 GGCTGATGTGGCTGTGCTAG 61.094 60.000 0.00 0.00 0.00 3.42
350 388 6.647334 TTGTCAAAAGAGATGGCAATTACA 57.353 33.333 0.00 0.00 37.46 2.41
405 443 9.897744 CTACACTCATCAACAATTAACAAATGT 57.102 29.630 0.00 0.00 0.00 2.71
495 536 3.826524 TGCAAAGACCTGACCAAACATA 58.173 40.909 0.00 0.00 0.00 2.29
517 560 7.890655 ACATACATACCTAGTCTCTCATGCATA 59.109 37.037 0.00 0.00 0.00 3.14
518 561 8.911965 CATACATACCTAGTCTCTCATGCATAT 58.088 37.037 0.00 0.00 0.00 1.78
519 562 7.167924 ACATACCTAGTCTCTCATGCATATG 57.832 40.000 0.00 0.00 35.57 1.78
520 563 4.533919 ACCTAGTCTCTCATGCATATGC 57.466 45.455 21.09 21.09 42.50 3.14
577 622 6.660521 ACATGTTTCTTCAAATCAGCCTATCA 59.339 34.615 0.00 0.00 0.00 2.15
585 630 8.039538 TCTTCAAATCAGCCTATCAGCTATATG 58.960 37.037 0.00 0.00 42.61 1.78
619 664 7.277319 CGTACATAGGAGAAAAGTAAAGGGAAC 59.723 40.741 0.00 0.00 0.00 3.62
810 1183 5.769967 AGATATAGCGAATTAAAGCTGCG 57.230 39.130 11.42 0.00 44.32 5.18
874 1247 4.305539 AAATCTGATGTGTGATGTGGGA 57.694 40.909 0.00 0.00 0.00 4.37
987 1360 6.044682 GCATTATAAAAGTTGGCATCTTGCT 58.955 36.000 11.35 5.26 44.28 3.91
997 1372 1.059173 GCATCTTGCTCGCTCTATCG 58.941 55.000 0.00 0.00 40.96 2.92
1021 1404 4.603610 CCTTCCCTATTCCCATTCATACCT 59.396 45.833 0.00 0.00 0.00 3.08
1022 1405 5.280727 CCTTCCCTATTCCCATTCATACCTC 60.281 48.000 0.00 0.00 0.00 3.85
1025 1408 3.261897 CCTATTCCCATTCATACCTCGCT 59.738 47.826 0.00 0.00 0.00 4.93
1040 1423 0.737804 TCGCTTTGCTTTCTTGTGCA 59.262 45.000 0.00 0.00 37.42 4.57
1056 1439 2.437897 CACCCAAGCAAGCCTCCT 59.562 61.111 0.00 0.00 0.00 3.69
1057 1440 1.228675 CACCCAAGCAAGCCTCCTT 60.229 57.895 0.00 0.00 0.00 3.36
1071 1458 2.939198 GCCTCCTTGCTCTTCTTCTTCC 60.939 54.545 0.00 0.00 0.00 3.46
1093 1480 0.382515 CTTCCGACCGATCTCACTCC 59.617 60.000 0.00 0.00 0.00 3.85
1098 1485 0.955905 GACCGATCTCACTCCTAGCC 59.044 60.000 0.00 0.00 0.00 3.93
1102 1489 1.703411 GATCTCACTCCTAGCCAGCT 58.297 55.000 0.00 0.00 0.00 4.24
1103 1490 2.038659 GATCTCACTCCTAGCCAGCTT 58.961 52.381 0.00 0.00 0.00 3.74
1104 1491 2.828661 TCTCACTCCTAGCCAGCTTA 57.171 50.000 0.00 0.00 0.00 3.09
1217 1623 2.204090 AGGTTCCACCCCACCGAT 60.204 61.111 0.00 0.00 39.75 4.18
1337 1743 3.711704 GAGATCTCCCAGGTACCAATTCA 59.288 47.826 15.94 0.00 0.00 2.57
1345 1751 1.628846 AGGTACCAATTCACTTCGCCT 59.371 47.619 15.94 0.00 0.00 5.52
1415 1831 6.203530 GCTAGCTGCTGATGTTGTTTGATATA 59.796 38.462 13.43 0.00 38.95 0.86
1416 1832 6.369059 AGCTGCTGATGTTGTTTGATATAC 57.631 37.500 0.00 0.00 0.00 1.47
1733 2150 4.775236 AGCTCTCCAACATTCCATTCTAC 58.225 43.478 0.00 0.00 0.00 2.59
1735 2152 4.813697 GCTCTCCAACATTCCATTCTACTC 59.186 45.833 0.00 0.00 0.00 2.59
1736 2153 5.011090 TCTCCAACATTCCATTCTACTCG 57.989 43.478 0.00 0.00 0.00 4.18
1738 2155 5.655090 TCTCCAACATTCCATTCTACTCGTA 59.345 40.000 0.00 0.00 0.00 3.43
1739 2156 6.153851 TCTCCAACATTCCATTCTACTCGTAA 59.846 38.462 0.00 0.00 0.00 3.18
1740 2157 6.884832 TCCAACATTCCATTCTACTCGTAAT 58.115 36.000 0.00 0.00 0.00 1.89
1742 2159 8.479689 TCCAACATTCCATTCTACTCGTAATTA 58.520 33.333 0.00 0.00 0.00 1.40
1754 2171 9.903682 TTCTACTCGTAATTATTAGGTATGCAC 57.096 33.333 0.00 0.00 0.00 4.57
1755 2172 9.293404 TCTACTCGTAATTATTAGGTATGCACT 57.707 33.333 0.00 0.00 0.00 4.40
1757 2174 7.948357 ACTCGTAATTATTAGGTATGCACTCA 58.052 34.615 0.00 0.00 0.00 3.41
1758 2175 8.418662 ACTCGTAATTATTAGGTATGCACTCAA 58.581 33.333 0.00 0.00 0.00 3.02
1759 2176 8.583810 TCGTAATTATTAGGTATGCACTCAAC 57.416 34.615 0.00 0.00 0.00 3.18
1760 2177 8.198778 TCGTAATTATTAGGTATGCACTCAACA 58.801 33.333 0.00 0.00 0.00 3.33
1761 2178 8.988934 CGTAATTATTAGGTATGCACTCAACAT 58.011 33.333 0.00 0.00 0.00 2.71
1786 2203 1.066502 TCGGAGCGTGAATTGATTGGA 60.067 47.619 0.00 0.00 0.00 3.53
1787 2204 1.942657 CGGAGCGTGAATTGATTGGAT 59.057 47.619 0.00 0.00 0.00 3.41
1790 2207 4.377738 CGGAGCGTGAATTGATTGGATATG 60.378 45.833 0.00 0.00 0.00 1.78
1796 2214 5.396362 CGTGAATTGATTGGATATGTTTCGC 59.604 40.000 0.00 0.00 0.00 4.70
1828 2246 1.153628 CGGTCAGGACGAATGGGTC 60.154 63.158 0.00 0.00 36.18 4.46
2051 2469 4.351938 CGGCCAAGACGACGACCA 62.352 66.667 2.24 0.00 35.20 4.02
2347 2768 4.681978 GGAGGTGTCGTTGGCGCT 62.682 66.667 7.64 0.00 38.14 5.92
2390 2811 3.426568 GTCTGCAGTTGCCGAGCC 61.427 66.667 14.67 0.00 41.18 4.70
2496 2917 1.066215 TCTTGCTTCTGCCGCTATGAA 60.066 47.619 0.00 0.00 38.71 2.57
2518 2939 1.432270 GACGCCCAGCTGCTGATAAC 61.432 60.000 30.10 14.65 32.44 1.89
2619 3040 9.750125 TCGATGTTGATTATATATGGACTATGC 57.250 33.333 0.00 0.00 0.00 3.14
2752 3180 5.837437 TGGCACATAATTTTCAGTTTCGTT 58.163 33.333 0.00 0.00 0.00 3.85
2781 3225 4.104102 TGTGGGGATCTTTGAGTAACTTGT 59.896 41.667 0.00 0.00 0.00 3.16
2925 3375 9.656323 TCTTGGTAAGTTATATATGAGGACTGT 57.344 33.333 0.00 0.00 0.00 3.55
2926 3376 9.698309 CTTGGTAAGTTATATATGAGGACTGTG 57.302 37.037 0.00 0.00 0.00 3.66
2936 3386 0.106708 GAGGACTGTGAAGTGGTGCA 59.893 55.000 0.00 0.00 0.00 4.57
2947 3397 3.245016 TGAAGTGGTGCAGAAATGAGGAT 60.245 43.478 0.00 0.00 0.00 3.24
2948 3398 2.719739 AGTGGTGCAGAAATGAGGATG 58.280 47.619 0.00 0.00 0.00 3.51
2949 3399 1.133790 GTGGTGCAGAAATGAGGATGC 59.866 52.381 0.00 0.00 39.14 3.91
2950 3400 1.272037 TGGTGCAGAAATGAGGATGCA 60.272 47.619 0.00 0.00 45.82 3.96
2953 3403 1.407618 TGCAGAAATGAGGATGCATGC 59.592 47.619 11.82 11.82 43.34 4.06
2954 3404 1.681793 GCAGAAATGAGGATGCATGCT 59.318 47.619 21.83 21.83 38.54 3.79
2955 3405 2.100916 GCAGAAATGAGGATGCATGCTT 59.899 45.455 22.53 13.23 38.54 3.91
2956 3406 3.317149 GCAGAAATGAGGATGCATGCTTA 59.683 43.478 22.53 18.65 38.54 3.09
2957 3407 4.022242 GCAGAAATGAGGATGCATGCTTAT 60.022 41.667 22.53 20.14 38.54 1.73
2958 3408 5.461526 CAGAAATGAGGATGCATGCTTATG 58.538 41.667 23.16 11.28 0.00 1.90
2959 3409 5.009710 CAGAAATGAGGATGCATGCTTATGT 59.990 40.000 23.16 18.95 0.00 2.29
2960 3410 5.597182 AGAAATGAGGATGCATGCTTATGTT 59.403 36.000 23.16 18.30 0.00 2.71
2961 3411 5.449107 AATGAGGATGCATGCTTATGTTC 57.551 39.130 23.16 10.49 0.00 3.18
2962 3412 2.874086 TGAGGATGCATGCTTATGTTCG 59.126 45.455 22.53 0.00 0.00 3.95
2963 3413 2.224606 AGGATGCATGCTTATGTTCGG 58.775 47.619 20.33 0.00 0.00 4.30
2964 3414 1.267806 GGATGCATGCTTATGTTCGGG 59.732 52.381 20.33 0.00 0.00 5.14
2965 3415 2.221169 GATGCATGCTTATGTTCGGGA 58.779 47.619 20.33 0.00 0.00 5.14
2966 3416 2.121291 TGCATGCTTATGTTCGGGAA 57.879 45.000 20.33 0.00 0.00 3.97
2967 3417 1.742831 TGCATGCTTATGTTCGGGAAC 59.257 47.619 20.33 4.63 41.50 3.62
2968 3418 2.017049 GCATGCTTATGTTCGGGAACT 58.983 47.619 11.37 1.94 41.67 3.01
2969 3419 2.032178 GCATGCTTATGTTCGGGAACTC 59.968 50.000 11.37 0.00 41.67 3.01
2970 3420 2.004583 TGCTTATGTTCGGGAACTCG 57.995 50.000 12.33 0.00 41.67 4.18
2971 3421 1.287425 GCTTATGTTCGGGAACTCGG 58.713 55.000 12.33 2.71 41.67 4.63
2972 3422 1.287425 CTTATGTTCGGGAACTCGGC 58.713 55.000 12.33 0.00 41.67 5.54
2973 3423 0.899720 TTATGTTCGGGAACTCGGCT 59.100 50.000 12.33 0.00 41.67 5.52
2974 3424 1.766494 TATGTTCGGGAACTCGGCTA 58.234 50.000 12.33 0.00 41.67 3.93
2975 3425 1.120530 ATGTTCGGGAACTCGGCTAT 58.879 50.000 12.33 0.00 41.67 2.97
2976 3426 0.899720 TGTTCGGGAACTCGGCTATT 59.100 50.000 12.33 0.00 41.67 1.73
2977 3427 1.276989 TGTTCGGGAACTCGGCTATTT 59.723 47.619 12.33 0.00 41.67 1.40
2978 3428 2.289819 TGTTCGGGAACTCGGCTATTTT 60.290 45.455 12.33 0.00 41.67 1.82
2979 3429 3.055963 TGTTCGGGAACTCGGCTATTTTA 60.056 43.478 12.33 0.00 41.67 1.52
2980 3430 3.447918 TCGGGAACTCGGCTATTTTAG 57.552 47.619 0.00 0.00 0.00 1.85
2981 3431 6.019796 GTTCGGGAACTCGGCTATTTTAGC 62.020 50.000 4.35 0.00 43.04 3.09
3011 3461 6.553100 TGGATGTTGGTCCAAATTAAGACTTT 59.447 34.615 5.69 0.00 45.03 2.66
3137 3594 3.287867 AATAAGGACCTCGGTCGTCTA 57.712 47.619 11.29 7.24 45.41 2.59
3138 3595 3.505480 ATAAGGACCTCGGTCGTCTAT 57.495 47.619 11.29 8.82 45.41 1.98
3139 3596 4.630644 ATAAGGACCTCGGTCGTCTATA 57.369 45.455 11.29 2.24 45.41 1.31
3140 3597 3.505480 AAGGACCTCGGTCGTCTATAT 57.495 47.619 11.29 0.00 45.41 0.86
3141 3598 4.630644 AAGGACCTCGGTCGTCTATATA 57.369 45.455 11.29 0.00 45.41 0.86
3142 3599 3.936564 AGGACCTCGGTCGTCTATATAC 58.063 50.000 9.81 0.00 45.41 1.47
3190 3647 5.651530 TGAATCTTGATTGTCCTAGTCGTC 58.348 41.667 0.09 0.00 0.00 4.20
3247 3704 4.514441 CAGATGATGCTGTTGATTAGGTCC 59.486 45.833 0.00 0.00 0.00 4.46
3255 3712 4.404715 GCTGTTGATTAGGTCCTGGTACTA 59.595 45.833 0.00 0.00 0.00 1.82
3273 3730 8.818622 TGGTACTAGCTTATTCTGTTCTCTAA 57.181 34.615 0.00 0.00 0.00 2.10
3281 3738 9.362151 AGCTTATTCTGTTCTCTAACTAGCTAT 57.638 33.333 0.00 0.00 36.51 2.97
3371 3837 2.120232 GCTAGCTAGTGCATGTGTACG 58.880 52.381 21.62 0.00 42.74 3.67
3372 3838 2.479730 GCTAGCTAGTGCATGTGTACGT 60.480 50.000 21.62 0.00 42.74 3.57
3373 3839 3.242969 GCTAGCTAGTGCATGTGTACGTA 60.243 47.826 21.62 0.00 42.74 3.57
3374 3840 3.146618 AGCTAGTGCATGTGTACGTAC 57.853 47.619 18.90 18.90 42.74 3.67
3375 3841 1.844357 GCTAGTGCATGTGTACGTACG 59.156 52.381 20.18 15.01 39.41 3.67
3376 3842 2.730090 GCTAGTGCATGTGTACGTACGT 60.730 50.000 25.98 25.98 39.41 3.57
3377 3843 2.427232 AGTGCATGTGTACGTACGTT 57.573 45.000 27.92 10.83 35.74 3.99
3378 3844 2.322161 AGTGCATGTGTACGTACGTTC 58.678 47.619 27.92 21.97 35.74 3.95
3379 3845 2.052891 GTGCATGTGTACGTACGTTCA 58.947 47.619 27.92 24.51 0.00 3.18
3380 3846 2.090041 GTGCATGTGTACGTACGTTCAG 59.910 50.000 27.92 16.10 0.00 3.02
3381 3847 2.287728 TGCATGTGTACGTACGTTCAGT 60.288 45.455 27.92 15.53 0.00 3.41
3382 3848 3.058363 TGCATGTGTACGTACGTTCAGTA 60.058 43.478 27.92 18.41 0.00 2.74
3383 3849 3.913763 GCATGTGTACGTACGTTCAGTAA 59.086 43.478 27.92 15.51 37.02 2.24
3384 3850 4.560035 GCATGTGTACGTACGTTCAGTAAT 59.440 41.667 27.92 16.96 37.02 1.89
3385 3851 5.498069 GCATGTGTACGTACGTTCAGTAATG 60.498 44.000 27.92 25.95 37.02 1.90
3386 3852 3.913763 TGTGTACGTACGTTCAGTAATGC 59.086 43.478 27.92 14.17 37.02 3.56
3387 3853 3.913763 GTGTACGTACGTTCAGTAATGCA 59.086 43.478 27.92 5.55 37.02 3.96
3388 3854 4.560035 GTGTACGTACGTTCAGTAATGCAT 59.440 41.667 27.92 0.00 37.02 3.96
3389 3855 4.559643 TGTACGTACGTTCAGTAATGCATG 59.440 41.667 27.92 0.00 37.02 4.06
3390 3856 3.840468 ACGTACGTTCAGTAATGCATGA 58.160 40.909 16.72 0.00 37.02 3.07
3391 3857 4.430007 ACGTACGTTCAGTAATGCATGAT 58.570 39.130 16.72 0.00 37.02 2.45
3392 3858 4.267690 ACGTACGTTCAGTAATGCATGATG 59.732 41.667 16.72 0.00 37.02 3.07
3393 3859 4.267690 CGTACGTTCAGTAATGCATGATGT 59.732 41.667 7.22 0.00 37.02 3.06
3394 3860 5.220397 CGTACGTTCAGTAATGCATGATGTT 60.220 40.000 7.22 0.00 37.02 2.71
3395 3861 5.221891 ACGTTCAGTAATGCATGATGTTC 57.778 39.130 0.00 0.00 0.00 3.18
3396 3862 4.937620 ACGTTCAGTAATGCATGATGTTCT 59.062 37.500 0.00 0.00 0.00 3.01
3397 3863 5.412594 ACGTTCAGTAATGCATGATGTTCTT 59.587 36.000 0.00 0.00 0.00 2.52
3398 3864 6.593770 ACGTTCAGTAATGCATGATGTTCTTA 59.406 34.615 0.00 0.00 0.00 2.10
3399 3865 7.280876 ACGTTCAGTAATGCATGATGTTCTTAT 59.719 33.333 0.00 0.00 0.00 1.73
3400 3866 8.124823 CGTTCAGTAATGCATGATGTTCTTATT 58.875 33.333 0.00 0.00 0.00 1.40
3401 3867 9.229784 GTTCAGTAATGCATGATGTTCTTATTG 57.770 33.333 0.00 0.00 0.00 1.90
3402 3868 7.933396 TCAGTAATGCATGATGTTCTTATTGG 58.067 34.615 0.00 0.00 0.00 3.16
3403 3869 7.774625 TCAGTAATGCATGATGTTCTTATTGGA 59.225 33.333 0.00 0.00 0.00 3.53
3404 3870 8.407832 CAGTAATGCATGATGTTCTTATTGGAA 58.592 33.333 0.00 0.00 0.00 3.53
3405 3871 8.627403 AGTAATGCATGATGTTCTTATTGGAAG 58.373 33.333 0.00 0.00 0.00 3.46
3406 3872 7.649533 AATGCATGATGTTCTTATTGGAAGA 57.350 32.000 0.00 0.00 0.00 2.87
3407 3873 7.649533 ATGCATGATGTTCTTATTGGAAGAA 57.350 32.000 0.00 0.00 34.20 2.52
3408 3874 7.465353 TGCATGATGTTCTTATTGGAAGAAA 57.535 32.000 0.00 0.00 37.93 2.52
3409 3875 7.894708 TGCATGATGTTCTTATTGGAAGAAAA 58.105 30.769 0.00 0.00 37.93 2.29
3410 3876 7.814107 TGCATGATGTTCTTATTGGAAGAAAAC 59.186 33.333 0.00 0.00 37.93 2.43
3411 3877 7.814107 GCATGATGTTCTTATTGGAAGAAAACA 59.186 33.333 0.00 0.00 37.93 2.83
3412 3878 9.695526 CATGATGTTCTTATTGGAAGAAAACAA 57.304 29.630 1.47 0.00 37.93 2.83
3414 3880 9.748708 TGATGTTCTTATTGGAAGAAAACAAAG 57.251 29.630 1.47 0.00 37.93 2.77
3415 3881 9.750125 GATGTTCTTATTGGAAGAAAACAAAGT 57.250 29.630 1.47 0.00 37.93 2.66
3416 3882 9.750125 ATGTTCTTATTGGAAGAAAACAAAGTC 57.250 29.630 1.47 0.00 37.93 3.01
3417 3883 7.913297 TGTTCTTATTGGAAGAAAACAAAGTCG 59.087 33.333 1.47 0.00 37.93 4.18
3418 3884 7.795482 TCTTATTGGAAGAAAACAAAGTCGA 57.205 32.000 0.00 0.00 0.00 4.20
3419 3885 7.861630 TCTTATTGGAAGAAAACAAAGTCGAG 58.138 34.615 0.00 0.00 0.00 4.04
3420 3886 4.893424 TTGGAAGAAAACAAAGTCGAGG 57.107 40.909 0.00 0.00 0.00 4.63
3421 3887 3.211045 TGGAAGAAAACAAAGTCGAGGG 58.789 45.455 0.00 0.00 0.00 4.30
3422 3888 3.211865 GGAAGAAAACAAAGTCGAGGGT 58.788 45.455 0.00 0.00 0.00 4.34
3423 3889 3.003378 GGAAGAAAACAAAGTCGAGGGTG 59.997 47.826 0.00 0.00 0.00 4.61
3424 3890 2.572290 AGAAAACAAAGTCGAGGGTGG 58.428 47.619 0.00 0.00 0.00 4.61
3425 3891 2.092592 AGAAAACAAAGTCGAGGGTGGT 60.093 45.455 0.00 0.00 0.00 4.16
3426 3892 1.963172 AAACAAAGTCGAGGGTGGTC 58.037 50.000 0.00 0.00 0.00 4.02
3427 3893 0.834612 AACAAAGTCGAGGGTGGTCA 59.165 50.000 0.00 0.00 0.00 4.02
3428 3894 1.056660 ACAAAGTCGAGGGTGGTCAT 58.943 50.000 0.00 0.00 0.00 3.06
3429 3895 2.253610 ACAAAGTCGAGGGTGGTCATA 58.746 47.619 0.00 0.00 0.00 2.15
3430 3896 2.233922 ACAAAGTCGAGGGTGGTCATAG 59.766 50.000 0.00 0.00 0.00 2.23
3431 3897 2.233305 AAGTCGAGGGTGGTCATAGT 57.767 50.000 0.00 0.00 0.00 2.12
3432 3898 3.377253 AAGTCGAGGGTGGTCATAGTA 57.623 47.619 0.00 0.00 0.00 1.82
3433 3899 2.652590 AGTCGAGGGTGGTCATAGTAC 58.347 52.381 0.00 0.00 0.00 2.73
3434 3900 2.241685 AGTCGAGGGTGGTCATAGTACT 59.758 50.000 0.00 0.00 0.00 2.73
3435 3901 3.457380 AGTCGAGGGTGGTCATAGTACTA 59.543 47.826 4.77 4.77 0.00 1.82
3436 3902 3.563390 GTCGAGGGTGGTCATAGTACTAC 59.437 52.174 4.31 0.00 0.00 2.73
3437 3903 3.457380 TCGAGGGTGGTCATAGTACTACT 59.543 47.826 4.31 0.00 31.98 2.57
3438 3904 3.814283 CGAGGGTGGTCATAGTACTACTC 59.186 52.174 4.31 4.01 31.82 2.59
3439 3905 4.444591 CGAGGGTGGTCATAGTACTACTCT 60.445 50.000 4.31 0.00 43.63 3.24
3440 3906 5.221601 CGAGGGTGGTCATAGTACTACTCTA 60.222 48.000 4.31 0.00 41.29 2.43
3441 3907 6.587560 AGGGTGGTCATAGTACTACTCTAA 57.412 41.667 4.31 0.00 39.64 2.10
3442 3908 6.978261 AGGGTGGTCATAGTACTACTCTAAA 58.022 40.000 4.31 0.00 39.64 1.85
3443 3909 7.593653 AGGGTGGTCATAGTACTACTCTAAAT 58.406 38.462 4.31 0.00 39.64 1.40
3444 3910 8.730948 AGGGTGGTCATAGTACTACTCTAAATA 58.269 37.037 4.31 0.00 39.64 1.40
3445 3911 9.012161 GGGTGGTCATAGTACTACTCTAAATAG 57.988 40.741 4.31 0.00 29.26 1.73
3446 3912 9.012161 GGTGGTCATAGTACTACTCTAAATAGG 57.988 40.741 4.31 0.00 31.98 2.57
3447 3913 8.513774 GTGGTCATAGTACTACTCTAAATAGGC 58.486 40.741 4.31 0.00 0.00 3.93
3448 3914 8.446394 TGGTCATAGTACTACTCTAAATAGGCT 58.554 37.037 4.31 0.00 0.00 4.58
3449 3915 8.732531 GGTCATAGTACTACTCTAAATAGGCTG 58.267 40.741 4.31 0.00 0.00 4.85
3450 3916 9.287373 GTCATAGTACTACTCTAAATAGGCTGT 57.713 37.037 4.31 0.00 0.00 4.40
3455 3921 8.936787 AGTACTACTCTAAATAGGCTGTAGAGA 58.063 37.037 25.85 13.67 42.27 3.10
3456 3922 8.992073 GTACTACTCTAAATAGGCTGTAGAGAC 58.008 40.741 25.85 15.76 42.27 3.36
3457 3923 7.575505 ACTACTCTAAATAGGCTGTAGAGACA 58.424 38.462 25.85 16.77 42.27 3.41
3470 3936 5.276461 TGTAGAGACAGAGAGAGCTAGAG 57.724 47.826 0.00 0.00 0.00 2.43
3471 3937 4.959839 TGTAGAGACAGAGAGAGCTAGAGA 59.040 45.833 0.00 0.00 0.00 3.10
3472 3938 5.602561 TGTAGAGACAGAGAGAGCTAGAGAT 59.397 44.000 0.00 0.00 0.00 2.75
3473 3939 6.780522 TGTAGAGACAGAGAGAGCTAGAGATA 59.219 42.308 0.00 0.00 0.00 1.98
3474 3940 6.942163 AGAGACAGAGAGAGCTAGAGATAT 57.058 41.667 0.00 0.00 0.00 1.63
3475 3941 6.940739 AGAGACAGAGAGAGCTAGAGATATC 58.059 44.000 0.00 0.00 0.00 1.63
3476 3942 6.728164 AGAGACAGAGAGAGCTAGAGATATCT 59.272 42.308 4.47 4.47 34.43 1.98
3477 3943 7.895962 AGAGACAGAGAGAGCTAGAGATATCTA 59.104 40.741 4.89 0.00 31.62 1.98
3478 3944 8.435931 AGACAGAGAGAGCTAGAGATATCTAA 57.564 38.462 4.89 0.00 31.62 2.10
3479 3945 8.880244 AGACAGAGAGAGCTAGAGATATCTAAA 58.120 37.037 4.89 0.00 31.62 1.85
3480 3946 8.848474 ACAGAGAGAGCTAGAGATATCTAAAC 57.152 38.462 4.89 0.00 31.62 2.01
3481 3947 7.883311 ACAGAGAGAGCTAGAGATATCTAAACC 59.117 40.741 4.89 0.00 31.62 3.27
3482 3948 7.882791 CAGAGAGAGCTAGAGATATCTAAACCA 59.117 40.741 4.89 0.00 31.62 3.67
3483 3949 8.444783 AGAGAGAGCTAGAGATATCTAAACCAA 58.555 37.037 4.89 0.00 31.62 3.67
3484 3950 8.635765 AGAGAGCTAGAGATATCTAAACCAAG 57.364 38.462 4.89 0.00 29.45 3.61
3485 3951 8.444783 AGAGAGCTAGAGATATCTAAACCAAGA 58.555 37.037 4.89 0.00 29.45 3.02
3486 3952 8.635765 AGAGCTAGAGATATCTAAACCAAGAG 57.364 38.462 4.89 0.00 0.00 2.85
3487 3953 8.444783 AGAGCTAGAGATATCTAAACCAAGAGA 58.555 37.037 4.89 0.00 0.00 3.10
3488 3954 8.635765 AGCTAGAGATATCTAAACCAAGAGAG 57.364 38.462 4.89 0.00 0.00 3.20
3489 3955 8.224720 AGCTAGAGATATCTAAACCAAGAGAGT 58.775 37.037 4.89 0.00 0.00 3.24
3490 3956 8.296713 GCTAGAGATATCTAAACCAAGAGAGTG 58.703 40.741 4.89 0.00 0.00 3.51
3491 3957 9.567776 CTAGAGATATCTAAACCAAGAGAGTGA 57.432 37.037 4.89 0.00 0.00 3.41
3492 3958 8.463930 AGAGATATCTAAACCAAGAGAGTGAG 57.536 38.462 4.89 0.00 0.00 3.51
3493 3959 8.278639 AGAGATATCTAAACCAAGAGAGTGAGA 58.721 37.037 4.89 0.00 0.00 3.27
3494 3960 8.232913 AGATATCTAAACCAAGAGAGTGAGAC 57.767 38.462 2.53 0.00 0.00 3.36
3495 3961 7.836685 AGATATCTAAACCAAGAGAGTGAGACA 59.163 37.037 2.53 0.00 0.00 3.41
3496 3962 6.865834 ATCTAAACCAAGAGAGTGAGACAT 57.134 37.500 0.00 0.00 0.00 3.06
3497 3963 6.030548 TCTAAACCAAGAGAGTGAGACATG 57.969 41.667 0.00 0.00 0.00 3.21
3498 3964 3.692257 AACCAAGAGAGTGAGACATGG 57.308 47.619 0.00 0.00 0.00 3.66
3499 3965 2.614259 ACCAAGAGAGTGAGACATGGT 58.386 47.619 0.00 0.00 34.98 3.55
3500 3966 2.301296 ACCAAGAGAGTGAGACATGGTG 59.699 50.000 0.00 0.00 38.22 4.17
3501 3967 2.301296 CCAAGAGAGTGAGACATGGTGT 59.699 50.000 0.00 0.00 0.00 4.16
3502 3968 3.511540 CCAAGAGAGTGAGACATGGTGTA 59.488 47.826 0.00 0.00 0.00 2.90
3503 3969 4.161189 CCAAGAGAGTGAGACATGGTGTAT 59.839 45.833 0.00 0.00 0.00 2.29
3504 3970 5.360999 CCAAGAGAGTGAGACATGGTGTATA 59.639 44.000 0.00 0.00 0.00 1.47
3505 3971 6.041409 CCAAGAGAGTGAGACATGGTGTATAT 59.959 42.308 0.00 0.00 0.00 0.86
3506 3972 7.231519 CCAAGAGAGTGAGACATGGTGTATATA 59.768 40.741 0.00 0.00 0.00 0.86
3507 3973 8.801299 CAAGAGAGTGAGACATGGTGTATATAT 58.199 37.037 0.00 0.00 0.00 0.86
3534 4000 7.688918 ATTTTTCCATATGTCCTCTCTCTCT 57.311 36.000 1.24 0.00 0.00 3.10
3535 4001 7.502060 TTTTTCCATATGTCCTCTCTCTCTT 57.498 36.000 1.24 0.00 0.00 2.85
3536 4002 6.723298 TTTCCATATGTCCTCTCTCTCTTC 57.277 41.667 1.24 0.00 0.00 2.87
3537 4003 4.393834 TCCATATGTCCTCTCTCTCTTCG 58.606 47.826 1.24 0.00 0.00 3.79
3538 4004 4.141287 CCATATGTCCTCTCTCTCTTCGT 58.859 47.826 1.24 0.00 0.00 3.85
3539 4005 4.582656 CCATATGTCCTCTCTCTCTTCGTT 59.417 45.833 1.24 0.00 0.00 3.85
3540 4006 5.068460 CCATATGTCCTCTCTCTCTTCGTTT 59.932 44.000 1.24 0.00 0.00 3.60
3541 4007 4.712122 ATGTCCTCTCTCTCTTCGTTTC 57.288 45.455 0.00 0.00 0.00 2.78
3542 4008 3.757270 TGTCCTCTCTCTCTTCGTTTCT 58.243 45.455 0.00 0.00 0.00 2.52
3543 4009 4.145807 TGTCCTCTCTCTCTTCGTTTCTT 58.854 43.478 0.00 0.00 0.00 2.52
3544 4010 4.585162 TGTCCTCTCTCTCTTCGTTTCTTT 59.415 41.667 0.00 0.00 0.00 2.52
3545 4011 5.069251 TGTCCTCTCTCTCTTCGTTTCTTTT 59.931 40.000 0.00 0.00 0.00 2.27
3546 4012 5.631929 GTCCTCTCTCTCTTCGTTTCTTTTC 59.368 44.000 0.00 0.00 0.00 2.29
3547 4013 5.302059 TCCTCTCTCTCTTCGTTTCTTTTCA 59.698 40.000 0.00 0.00 0.00 2.69
3548 4014 5.633182 CCTCTCTCTCTTCGTTTCTTTTCAG 59.367 44.000 0.00 0.00 0.00 3.02
3549 4015 6.150396 TCTCTCTCTTCGTTTCTTTTCAGT 57.850 37.500 0.00 0.00 0.00 3.41
3550 4016 6.210078 TCTCTCTCTTCGTTTCTTTTCAGTC 58.790 40.000 0.00 0.00 0.00 3.51
3551 4017 6.039941 TCTCTCTCTTCGTTTCTTTTCAGTCT 59.960 38.462 0.00 0.00 0.00 3.24
3552 4018 5.980116 TCTCTCTTCGTTTCTTTTCAGTCTG 59.020 40.000 0.00 0.00 0.00 3.51
3553 4019 5.661458 TCTCTTCGTTTCTTTTCAGTCTGT 58.339 37.500 0.00 0.00 0.00 3.41
3554 4020 6.802608 TCTCTTCGTTTCTTTTCAGTCTGTA 58.197 36.000 0.00 0.00 0.00 2.74
3555 4021 7.434492 TCTCTTCGTTTCTTTTCAGTCTGTAT 58.566 34.615 0.00 0.00 0.00 2.29
3556 4022 8.573885 TCTCTTCGTTTCTTTTCAGTCTGTATA 58.426 33.333 0.00 0.00 0.00 1.47
3557 4023 9.360093 CTCTTCGTTTCTTTTCAGTCTGTATAT 57.640 33.333 0.00 0.00 0.00 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
154 159 1.500474 TGCAGCTATCAGGTAGGCTT 58.500 50.000 0.00 0.00 0.00 4.35
181 191 3.374058 AGTGCTAATATTTCGTGGTGTGC 59.626 43.478 0.00 0.00 0.00 4.57
229 249 7.344095 TCAGCCTACCATTAAGTTAGTACTC 57.656 40.000 0.00 0.00 31.99 2.59
230 250 7.344871 ACATCAGCCTACCATTAAGTTAGTACT 59.655 37.037 0.00 0.00 35.68 2.73
236 256 4.526970 CCACATCAGCCTACCATTAAGTT 58.473 43.478 0.00 0.00 0.00 2.66
245 265 1.372087 GCACAGCCACATCAGCCTAC 61.372 60.000 0.00 0.00 0.00 3.18
262 282 5.395657 ATGTACACATTGAAGCTAGCTAGCA 60.396 40.000 39.50 24.06 41.87 3.49
263 283 5.050499 CATGTACACATTGAAGCTAGCTAGC 60.050 44.000 33.96 33.96 41.13 3.42
264 284 5.050499 GCATGTACACATTGAAGCTAGCTAG 60.050 44.000 19.70 16.84 33.61 3.42
265 285 4.811024 GCATGTACACATTGAAGCTAGCTA 59.189 41.667 19.70 2.19 33.61 3.32
266 286 3.624861 GCATGTACACATTGAAGCTAGCT 59.375 43.478 12.68 12.68 33.61 3.32
267 287 3.374988 TGCATGTACACATTGAAGCTAGC 59.625 43.478 6.62 6.62 33.61 3.42
268 288 5.507974 CATGCATGTACACATTGAAGCTAG 58.492 41.667 18.91 0.00 33.61 3.42
269 289 4.201940 GCATGCATGTACACATTGAAGCTA 60.202 41.667 26.79 0.00 33.61 3.32
350 388 1.067060 GTGCTTTGCTCCGGTTTCTTT 59.933 47.619 0.00 0.00 0.00 2.52
440 478 5.931146 GCTAGCTAGCTCAATGATAATGTGT 59.069 40.000 33.71 0.00 45.62 3.72
495 536 6.350864 GCATATGCATGAGAGACTAGGTATGT 60.351 42.308 22.84 0.00 41.59 2.29
517 560 3.028130 TCTTTGATGACCATGCATGCAT 58.972 40.909 27.46 27.46 37.08 3.96
518 561 2.448453 TCTTTGATGACCATGCATGCA 58.552 42.857 25.04 25.04 0.00 3.96
519 562 3.184541 GTTCTTTGATGACCATGCATGC 58.815 45.455 21.69 11.82 0.00 4.06
520 563 4.171005 GTGTTCTTTGATGACCATGCATG 58.829 43.478 20.19 20.19 0.00 4.06
521 564 3.827876 TGTGTTCTTTGATGACCATGCAT 59.172 39.130 0.00 0.00 0.00 3.96
522 565 3.004629 GTGTGTTCTTTGATGACCATGCA 59.995 43.478 0.00 0.00 0.00 3.96
523 566 3.004629 TGTGTGTTCTTTGATGACCATGC 59.995 43.478 0.00 0.00 0.00 4.06
524 567 4.834357 TGTGTGTTCTTTGATGACCATG 57.166 40.909 0.00 0.00 0.00 3.66
525 568 5.451798 GGTTTGTGTGTTCTTTGATGACCAT 60.452 40.000 0.00 0.00 0.00 3.55
526 569 4.142271 GGTTTGTGTGTTCTTTGATGACCA 60.142 41.667 0.00 0.00 0.00 4.02
585 630 3.795623 TCTCCTATGTACGGTTTCAGC 57.204 47.619 0.00 0.00 0.00 4.26
595 640 8.209802 TGTTCCCTTTACTTTTCTCCTATGTA 57.790 34.615 0.00 0.00 0.00 2.29
619 664 9.346725 GCCTAGATATTTTGACAAAAGAAACTG 57.653 33.333 17.73 11.21 33.22 3.16
659 707 8.517062 AGAAAGATACAAATCCCTCAAATCAG 57.483 34.615 0.00 0.00 31.98 2.90
810 1183 5.774498 ATTTCAGCGATTAATTCCCTTCC 57.226 39.130 0.00 0.00 0.00 3.46
874 1247 5.475719 TCTTCACTCGGTTTCATTAATCGT 58.524 37.500 0.00 0.00 41.17 3.73
980 1353 0.038709 GGCGATAGAGCGAGCAAGAT 60.039 55.000 0.00 0.00 38.18 2.40
987 1360 0.109913 TAGGGAAGGCGATAGAGCGA 59.890 55.000 0.00 0.00 38.18 4.93
997 1372 3.532641 ATGAATGGGAATAGGGAAGGC 57.467 47.619 0.00 0.00 0.00 4.35
1021 1404 0.737804 TGCACAAGAAAGCAAAGCGA 59.262 45.000 0.00 0.00 37.90 4.93
1022 1405 0.848305 GTGCACAAGAAAGCAAAGCG 59.152 50.000 13.17 0.00 43.20 4.68
1025 1408 1.189752 TGGGTGCACAAGAAAGCAAA 58.810 45.000 20.43 0.00 43.20 3.68
1040 1423 1.228675 CAAGGAGGCTTGCTTGGGT 60.229 57.895 20.41 0.00 45.76 4.51
1056 1439 3.008485 GGAAGGAGGAAGAAGAAGAGCAA 59.992 47.826 0.00 0.00 0.00 3.91
1057 1440 2.569404 GGAAGGAGGAAGAAGAAGAGCA 59.431 50.000 0.00 0.00 0.00 4.26
1071 1458 0.382515 GTGAGATCGGTCGGAAGGAG 59.617 60.000 0.00 0.00 0.00 3.69
1093 1480 2.035193 TCGATCAAGCTAAGCTGGCTAG 59.965 50.000 13.70 0.99 39.62 3.42
1098 1485 3.631144 CTCTCTCGATCAAGCTAAGCTG 58.369 50.000 0.00 0.00 39.62 4.24
1102 1489 2.289274 CTCGCTCTCTCGATCAAGCTAA 59.711 50.000 10.22 0.00 37.87 3.09
1103 1490 1.870402 CTCGCTCTCTCGATCAAGCTA 59.130 52.381 10.22 0.94 37.87 3.32
1104 1491 0.662619 CTCGCTCTCTCGATCAAGCT 59.337 55.000 10.22 0.00 37.87 3.74
1147 1553 2.182030 CTTGCTCCTCCGACGGAC 59.818 66.667 13.88 3.63 0.00 4.79
1148 1554 3.068691 CCTTGCTCCTCCGACGGA 61.069 66.667 17.28 17.28 0.00 4.69
1217 1623 2.064434 AGCTCGTGATGATCTCCTCA 57.936 50.000 0.00 0.00 38.53 3.86
1337 1743 0.173708 GACGATGAAGGAGGCGAAGT 59.826 55.000 0.00 0.00 0.00 3.01
1345 1751 5.730296 AAGAAGAAGAAGACGATGAAGGA 57.270 39.130 0.00 0.00 0.00 3.36
1415 1831 1.600916 GCCTTGCCTTCAGTTCCGT 60.601 57.895 0.00 0.00 0.00 4.69
1416 1832 2.335712 GGCCTTGCCTTCAGTTCCG 61.336 63.158 0.00 0.00 46.69 4.30
1733 2150 8.700644 GTTGAGTGCATACCTAATAATTACGAG 58.299 37.037 0.00 0.00 0.00 4.18
1735 2152 8.360325 TGTTGAGTGCATACCTAATAATTACG 57.640 34.615 0.00 0.00 0.00 3.18
1738 2155 8.559536 CGAATGTTGAGTGCATACCTAATAATT 58.440 33.333 0.00 0.00 0.00 1.40
1739 2156 7.931407 TCGAATGTTGAGTGCATACCTAATAAT 59.069 33.333 0.00 0.00 0.00 1.28
1740 2157 7.269316 TCGAATGTTGAGTGCATACCTAATAA 58.731 34.615 0.00 0.00 0.00 1.40
1742 2159 5.670485 TCGAATGTTGAGTGCATACCTAAT 58.330 37.500 0.00 0.00 0.00 1.73
1744 2161 4.729227 TCGAATGTTGAGTGCATACCTA 57.271 40.909 0.00 0.00 0.00 3.08
1745 2162 3.610040 TCGAATGTTGAGTGCATACCT 57.390 42.857 0.00 0.00 0.00 3.08
1746 2163 3.060272 CGATCGAATGTTGAGTGCATACC 60.060 47.826 10.26 0.00 0.00 2.73
1747 2164 3.060272 CCGATCGAATGTTGAGTGCATAC 60.060 47.826 18.66 0.00 0.00 2.39
1748 2165 3.123050 CCGATCGAATGTTGAGTGCATA 58.877 45.455 18.66 0.00 0.00 3.14
1749 2166 1.935873 CCGATCGAATGTTGAGTGCAT 59.064 47.619 18.66 0.00 0.00 3.96
1750 2167 1.067213 TCCGATCGAATGTTGAGTGCA 60.067 47.619 18.66 0.00 0.00 4.57
1751 2168 1.590238 CTCCGATCGAATGTTGAGTGC 59.410 52.381 18.66 0.00 0.00 4.40
1752 2169 1.590238 GCTCCGATCGAATGTTGAGTG 59.410 52.381 18.66 0.00 0.00 3.51
1753 2170 1.799181 CGCTCCGATCGAATGTTGAGT 60.799 52.381 18.66 0.00 0.00 3.41
1754 2171 0.848942 CGCTCCGATCGAATGTTGAG 59.151 55.000 18.66 14.08 0.00 3.02
1755 2172 0.172578 ACGCTCCGATCGAATGTTGA 59.827 50.000 18.66 2.77 0.00 3.18
1757 2174 0.172578 TCACGCTCCGATCGAATGTT 59.827 50.000 18.66 0.00 0.00 2.71
1758 2175 0.172578 TTCACGCTCCGATCGAATGT 59.827 50.000 18.66 6.56 0.00 2.71
1759 2176 1.491670 ATTCACGCTCCGATCGAATG 58.508 50.000 18.66 7.13 0.00 2.67
1760 2177 1.860950 CAATTCACGCTCCGATCGAAT 59.139 47.619 18.66 3.23 0.00 3.34
1761 2178 1.135228 TCAATTCACGCTCCGATCGAA 60.135 47.619 18.66 0.00 0.00 3.71
1796 2214 1.466167 CTGACCGATCAAAAGCACAGG 59.534 52.381 0.00 0.00 33.30 4.00
1828 2246 0.449786 TGTTGAACACCTTGCACACG 59.550 50.000 0.00 0.00 0.00 4.49
2050 2468 1.077068 ACTGTTGGTGGTGGTGGTG 60.077 57.895 0.00 0.00 0.00 4.17
2051 2469 1.077068 CACTGTTGGTGGTGGTGGT 60.077 57.895 0.00 0.00 41.90 4.16
2135 2553 4.865365 GGTCAAGCTGTAGTTAGACATGAC 59.135 45.833 0.00 0.00 35.20 3.06
2318 2739 0.032615 ACACCTCCTAGGGCTCTCAG 60.033 60.000 9.46 0.00 40.58 3.35
2367 2788 1.455383 CGGCAACTGCAGACCCTTTT 61.455 55.000 23.35 0.00 44.36 2.27
2496 2917 4.790962 CAGCAGCTGGGCGTCCAT 62.791 66.667 10.40 0.00 43.11 3.41
2514 2935 6.067217 AGAACCTAGCACCAAGATTGTTAT 57.933 37.500 0.00 0.00 0.00 1.89
2518 2939 4.872691 CAGTAGAACCTAGCACCAAGATTG 59.127 45.833 0.00 0.00 0.00 2.67
2619 3040 7.840342 AACTAATGCAACTGTAATCTCTCTG 57.160 36.000 0.00 0.00 0.00 3.35
2791 3235 6.465035 GCAAAGGATCTCCACCTGAGTTATAT 60.465 42.308 0.00 0.00 42.12 0.86
2888 3338 7.739498 ATAACTTACCAAGAATTGTTCGTGT 57.261 32.000 0.00 0.00 46.99 4.49
2925 3375 2.106338 TCCTCATTTCTGCACCACTTCA 59.894 45.455 0.00 0.00 0.00 3.02
2926 3376 2.783135 TCCTCATTTCTGCACCACTTC 58.217 47.619 0.00 0.00 0.00 3.01
2936 3386 5.138276 ACATAAGCATGCATCCTCATTTCT 58.862 37.500 21.98 0.00 35.39 2.52
2947 3397 1.742831 GTTCCCGAACATAAGCATGCA 59.257 47.619 21.98 0.00 40.84 3.96
2948 3398 2.017049 AGTTCCCGAACATAAGCATGC 58.983 47.619 10.51 10.51 43.47 4.06
2949 3399 2.285220 CGAGTTCCCGAACATAAGCATG 59.715 50.000 10.07 0.00 43.47 4.06
2950 3400 2.550978 CGAGTTCCCGAACATAAGCAT 58.449 47.619 10.07 0.00 43.47 3.79
2951 3401 1.404986 CCGAGTTCCCGAACATAAGCA 60.405 52.381 10.07 0.00 43.47 3.91
2952 3402 1.287425 CCGAGTTCCCGAACATAAGC 58.713 55.000 10.07 0.00 43.47 3.09
2953 3403 1.134788 AGCCGAGTTCCCGAACATAAG 60.135 52.381 10.07 0.00 43.47 1.73
2954 3404 0.899720 AGCCGAGTTCCCGAACATAA 59.100 50.000 10.07 0.00 43.47 1.90
2955 3405 1.766494 TAGCCGAGTTCCCGAACATA 58.234 50.000 10.07 0.00 43.47 2.29
2956 3406 1.120530 ATAGCCGAGTTCCCGAACAT 58.879 50.000 10.07 0.00 43.47 2.71
2957 3407 0.899720 AATAGCCGAGTTCCCGAACA 59.100 50.000 10.07 0.00 43.47 3.18
2958 3408 2.019948 AAATAGCCGAGTTCCCGAAC 57.980 50.000 0.00 0.00 41.45 3.95
2959 3409 2.773993 AAAATAGCCGAGTTCCCGAA 57.226 45.000 0.00 0.00 0.00 4.30
2960 3410 2.482490 GCTAAAATAGCCGAGTTCCCGA 60.482 50.000 0.00 0.00 45.95 5.14
2961 3411 1.865340 GCTAAAATAGCCGAGTTCCCG 59.135 52.381 0.00 0.00 45.95 5.14
2972 3422 5.418840 ACCAACATCCAACCAGCTAAAATAG 59.581 40.000 0.00 0.00 0.00 1.73
2973 3423 5.329399 ACCAACATCCAACCAGCTAAAATA 58.671 37.500 0.00 0.00 0.00 1.40
2974 3424 4.159557 ACCAACATCCAACCAGCTAAAAT 58.840 39.130 0.00 0.00 0.00 1.82
2975 3425 3.571590 ACCAACATCCAACCAGCTAAAA 58.428 40.909 0.00 0.00 0.00 1.52
2976 3426 3.153919 GACCAACATCCAACCAGCTAAA 58.846 45.455 0.00 0.00 0.00 1.85
2977 3427 2.554344 GGACCAACATCCAACCAGCTAA 60.554 50.000 0.00 0.00 38.77 3.09
2978 3428 1.004277 GGACCAACATCCAACCAGCTA 59.996 52.381 0.00 0.00 38.77 3.32
2979 3429 0.251341 GGACCAACATCCAACCAGCT 60.251 55.000 0.00 0.00 38.77 4.24
2980 3430 0.539438 TGGACCAACATCCAACCAGC 60.539 55.000 0.00 0.00 46.08 4.85
2981 3431 3.743714 TGGACCAACATCCAACCAG 57.256 52.632 0.00 0.00 46.08 4.00
3011 3461 9.436957 GTCTGAAATTTGGTAGTCTATTTCTCA 57.563 33.333 0.00 0.00 37.69 3.27
3023 3473 8.472007 AACCATAAGTTGTCTGAAATTTGGTA 57.528 30.769 0.00 0.00 37.29 3.25
3026 3476 8.063630 GCAAAACCATAAGTTGTCTGAAATTTG 58.936 33.333 0.00 0.00 39.19 2.32
3190 3647 3.192212 GGATGAGAAGGCAAAACAAGGAG 59.808 47.826 0.00 0.00 0.00 3.69
3247 3704 7.341445 AGAGAACAGAATAAGCTAGTACCAG 57.659 40.000 0.00 0.00 0.00 4.00
3255 3712 7.654022 AGCTAGTTAGAGAACAGAATAAGCT 57.346 36.000 0.00 0.00 38.10 3.74
3281 3738 4.141228 ACCCATCTGTGTAGCTAGCTAGTA 60.141 45.833 24.78 13.96 0.00 1.82
3283 3740 3.226777 ACCCATCTGTGTAGCTAGCTAG 58.773 50.000 24.78 16.84 0.00 3.42
3286 3743 3.492829 GGTTACCCATCTGTGTAGCTAGC 60.493 52.174 6.62 6.62 0.00 3.42
3359 3823 2.052891 TGAACGTACGTACACATGCAC 58.947 47.619 23.12 9.15 0.00 4.57
3371 3837 5.718649 ACATCATGCATTACTGAACGTAC 57.281 39.130 0.00 0.00 0.00 3.67
3372 3838 6.106003 AGAACATCATGCATTACTGAACGTA 58.894 36.000 0.00 0.00 0.00 3.57
3373 3839 4.937620 AGAACATCATGCATTACTGAACGT 59.062 37.500 0.00 0.00 0.00 3.99
3374 3840 5.475273 AGAACATCATGCATTACTGAACG 57.525 39.130 0.00 0.00 0.00 3.95
3375 3841 9.229784 CAATAAGAACATCATGCATTACTGAAC 57.770 33.333 0.00 0.00 0.00 3.18
3376 3842 8.407832 CCAATAAGAACATCATGCATTACTGAA 58.592 33.333 0.00 0.00 0.00 3.02
3377 3843 7.774625 TCCAATAAGAACATCATGCATTACTGA 59.225 33.333 0.00 0.00 0.00 3.41
3378 3844 7.933396 TCCAATAAGAACATCATGCATTACTG 58.067 34.615 0.00 0.00 0.00 2.74
3379 3845 8.523915 TTCCAATAAGAACATCATGCATTACT 57.476 30.769 0.00 0.00 0.00 2.24
3380 3846 8.623903 TCTTCCAATAAGAACATCATGCATTAC 58.376 33.333 0.00 0.00 0.00 1.89
3381 3847 8.750515 TCTTCCAATAAGAACATCATGCATTA 57.249 30.769 0.00 0.00 0.00 1.90
3382 3848 7.649533 TCTTCCAATAAGAACATCATGCATT 57.350 32.000 0.00 0.00 0.00 3.56
3383 3849 7.649533 TTCTTCCAATAAGAACATCATGCAT 57.350 32.000 0.00 0.00 31.86 3.96
3384 3850 7.465353 TTTCTTCCAATAAGAACATCATGCA 57.535 32.000 0.00 0.00 36.14 3.96
3385 3851 7.814107 TGTTTTCTTCCAATAAGAACATCATGC 59.186 33.333 0.00 0.00 36.14 4.06
3386 3852 9.695526 TTGTTTTCTTCCAATAAGAACATCATG 57.304 29.630 0.00 0.00 36.14 3.07
3388 3854 9.748708 CTTTGTTTTCTTCCAATAAGAACATCA 57.251 29.630 0.00 0.00 36.14 3.07
3389 3855 9.750125 ACTTTGTTTTCTTCCAATAAGAACATC 57.250 29.630 0.00 0.00 36.14 3.06
3390 3856 9.750125 GACTTTGTTTTCTTCCAATAAGAACAT 57.250 29.630 0.00 0.00 36.14 2.71
3391 3857 7.913297 CGACTTTGTTTTCTTCCAATAAGAACA 59.087 33.333 0.00 0.00 36.14 3.18
3392 3858 8.126700 TCGACTTTGTTTTCTTCCAATAAGAAC 58.873 33.333 0.00 0.00 36.14 3.01
3393 3859 8.215926 TCGACTTTGTTTTCTTCCAATAAGAA 57.784 30.769 0.00 0.00 34.73 2.52
3394 3860 7.041372 CCTCGACTTTGTTTTCTTCCAATAAGA 60.041 37.037 0.00 0.00 0.00 2.10
3395 3861 7.078228 CCTCGACTTTGTTTTCTTCCAATAAG 58.922 38.462 0.00 0.00 0.00 1.73
3396 3862 6.016610 CCCTCGACTTTGTTTTCTTCCAATAA 60.017 38.462 0.00 0.00 0.00 1.40
3397 3863 5.472137 CCCTCGACTTTGTTTTCTTCCAATA 59.528 40.000 0.00 0.00 0.00 1.90
3398 3864 4.278419 CCCTCGACTTTGTTTTCTTCCAAT 59.722 41.667 0.00 0.00 0.00 3.16
3399 3865 3.630312 CCCTCGACTTTGTTTTCTTCCAA 59.370 43.478 0.00 0.00 0.00 3.53
3400 3866 3.211045 CCCTCGACTTTGTTTTCTTCCA 58.789 45.455 0.00 0.00 0.00 3.53
3401 3867 3.003378 CACCCTCGACTTTGTTTTCTTCC 59.997 47.826 0.00 0.00 0.00 3.46
3402 3868 3.003378 CCACCCTCGACTTTGTTTTCTTC 59.997 47.826 0.00 0.00 0.00 2.87
3403 3869 2.949644 CCACCCTCGACTTTGTTTTCTT 59.050 45.455 0.00 0.00 0.00 2.52
3404 3870 2.092592 ACCACCCTCGACTTTGTTTTCT 60.093 45.455 0.00 0.00 0.00 2.52
3405 3871 2.289820 GACCACCCTCGACTTTGTTTTC 59.710 50.000 0.00 0.00 0.00 2.29
3406 3872 2.294979 GACCACCCTCGACTTTGTTTT 58.705 47.619 0.00 0.00 0.00 2.43
3407 3873 1.210967 TGACCACCCTCGACTTTGTTT 59.789 47.619 0.00 0.00 0.00 2.83
3408 3874 0.834612 TGACCACCCTCGACTTTGTT 59.165 50.000 0.00 0.00 0.00 2.83
3409 3875 1.056660 ATGACCACCCTCGACTTTGT 58.943 50.000 0.00 0.00 0.00 2.83
3410 3876 2.233922 ACTATGACCACCCTCGACTTTG 59.766 50.000 0.00 0.00 0.00 2.77
3411 3877 2.537143 ACTATGACCACCCTCGACTTT 58.463 47.619 0.00 0.00 0.00 2.66
3412 3878 2.233305 ACTATGACCACCCTCGACTT 57.767 50.000 0.00 0.00 0.00 3.01
3413 3879 2.241685 AGTACTATGACCACCCTCGACT 59.758 50.000 0.00 0.00 0.00 4.18
3414 3880 2.652590 AGTACTATGACCACCCTCGAC 58.347 52.381 0.00 0.00 0.00 4.20
3415 3881 3.457380 AGTAGTACTATGACCACCCTCGA 59.543 47.826 5.75 0.00 0.00 4.04
3416 3882 3.814283 GAGTAGTACTATGACCACCCTCG 59.186 52.174 5.75 0.00 0.00 4.63
3417 3883 5.051409 AGAGTAGTACTATGACCACCCTC 57.949 47.826 5.75 5.45 0.00 4.30
3418 3884 6.587560 TTAGAGTAGTACTATGACCACCCT 57.412 41.667 5.75 0.00 0.00 4.34
3419 3885 7.836479 ATTTAGAGTAGTACTATGACCACCC 57.164 40.000 5.75 0.00 0.00 4.61
3420 3886 9.012161 CCTATTTAGAGTAGTACTATGACCACC 57.988 40.741 5.75 0.00 0.00 4.61
3421 3887 8.513774 GCCTATTTAGAGTAGTACTATGACCAC 58.486 40.741 5.75 0.00 0.00 4.16
3422 3888 8.446394 AGCCTATTTAGAGTAGTACTATGACCA 58.554 37.037 5.75 0.00 0.00 4.02
3423 3889 8.732531 CAGCCTATTTAGAGTAGTACTATGACC 58.267 40.741 5.75 0.00 0.00 4.02
3424 3890 9.287373 ACAGCCTATTTAGAGTAGTACTATGAC 57.713 37.037 5.75 0.00 0.00 3.06
3429 3895 8.936787 TCTCTACAGCCTATTTAGAGTAGTACT 58.063 37.037 1.37 1.37 39.84 2.73
3430 3896 8.992073 GTCTCTACAGCCTATTTAGAGTAGTAC 58.008 40.741 5.10 0.00 39.84 2.73
3431 3897 8.712103 TGTCTCTACAGCCTATTTAGAGTAGTA 58.288 37.037 5.10 0.00 39.84 1.82
3432 3898 7.575505 TGTCTCTACAGCCTATTTAGAGTAGT 58.424 38.462 5.10 0.00 39.84 2.73
3433 3899 8.094798 CTGTCTCTACAGCCTATTTAGAGTAG 57.905 42.308 5.10 0.00 46.28 2.57
3435 3901 6.952773 CTGTCTCTACAGCCTATTTAGAGT 57.047 41.667 5.10 0.00 46.28 3.24
3448 3914 4.959839 TCTCTAGCTCTCTCTGTCTCTACA 59.040 45.833 0.00 0.00 0.00 2.74
3449 3915 5.531122 TCTCTAGCTCTCTCTGTCTCTAC 57.469 47.826 0.00 0.00 0.00 2.59
3450 3916 7.895962 AGATATCTCTAGCTCTCTCTGTCTCTA 59.104 40.741 0.00 0.00 0.00 2.43
3451 3917 6.728164 AGATATCTCTAGCTCTCTCTGTCTCT 59.272 42.308 0.00 0.00 0.00 3.10
3452 3918 6.940739 AGATATCTCTAGCTCTCTCTGTCTC 58.059 44.000 0.00 0.00 0.00 3.36
3453 3919 6.942163 AGATATCTCTAGCTCTCTCTGTCT 57.058 41.667 0.00 0.00 0.00 3.41
3454 3920 8.936864 GTTTAGATATCTCTAGCTCTCTCTGTC 58.063 40.741 8.95 0.00 35.43 3.51
3455 3921 7.883311 GGTTTAGATATCTCTAGCTCTCTCTGT 59.117 40.741 8.95 0.00 35.43 3.41
3456 3922 7.882791 TGGTTTAGATATCTCTAGCTCTCTCTG 59.117 40.741 8.95 0.00 35.43 3.35
3457 3923 7.984475 TGGTTTAGATATCTCTAGCTCTCTCT 58.016 38.462 8.95 0.00 35.43 3.10
3458 3924 8.630054 TTGGTTTAGATATCTCTAGCTCTCTC 57.370 38.462 8.95 0.00 35.43 3.20
3459 3925 8.444783 TCTTGGTTTAGATATCTCTAGCTCTCT 58.555 37.037 8.95 0.00 35.43 3.10
3460 3926 8.630054 TCTTGGTTTAGATATCTCTAGCTCTC 57.370 38.462 8.95 0.00 35.43 3.20
3461 3927 8.444783 TCTCTTGGTTTAGATATCTCTAGCTCT 58.555 37.037 8.95 0.00 35.43 4.09
3462 3928 8.630054 TCTCTTGGTTTAGATATCTCTAGCTC 57.370 38.462 8.95 0.00 35.43 4.09
3463 3929 8.224720 ACTCTCTTGGTTTAGATATCTCTAGCT 58.775 37.037 8.95 0.00 35.43 3.32
3464 3930 8.296713 CACTCTCTTGGTTTAGATATCTCTAGC 58.703 40.741 8.95 8.67 35.43 3.42
3465 3931 9.567776 TCACTCTCTTGGTTTAGATATCTCTAG 57.432 37.037 8.95 1.64 35.43 2.43
3466 3932 9.567776 CTCACTCTCTTGGTTTAGATATCTCTA 57.432 37.037 8.95 0.00 32.66 2.43
3467 3933 8.278639 TCTCACTCTCTTGGTTTAGATATCTCT 58.721 37.037 8.95 0.00 35.39 3.10
3468 3934 8.349983 GTCTCACTCTCTTGGTTTAGATATCTC 58.650 40.741 8.95 0.00 0.00 2.75
3469 3935 7.836685 TGTCTCACTCTCTTGGTTTAGATATCT 59.163 37.037 10.73 10.73 0.00 1.98
3470 3936 8.001881 TGTCTCACTCTCTTGGTTTAGATATC 57.998 38.462 0.00 0.00 0.00 1.63
3471 3937 7.962995 TGTCTCACTCTCTTGGTTTAGATAT 57.037 36.000 0.00 0.00 0.00 1.63
3472 3938 7.147828 CCATGTCTCACTCTCTTGGTTTAGATA 60.148 40.741 0.00 0.00 0.00 1.98
3473 3939 6.351711 CCATGTCTCACTCTCTTGGTTTAGAT 60.352 42.308 0.00 0.00 0.00 1.98
3474 3940 5.047021 CCATGTCTCACTCTCTTGGTTTAGA 60.047 44.000 0.00 0.00 0.00 2.10
3475 3941 5.174395 CCATGTCTCACTCTCTTGGTTTAG 58.826 45.833 0.00 0.00 0.00 1.85
3476 3942 4.593206 ACCATGTCTCACTCTCTTGGTTTA 59.407 41.667 0.00 0.00 36.62 2.01
3477 3943 3.392616 ACCATGTCTCACTCTCTTGGTTT 59.607 43.478 0.00 0.00 36.62 3.27
3478 3944 2.975489 ACCATGTCTCACTCTCTTGGTT 59.025 45.455 0.00 0.00 36.62 3.67
3479 3945 2.301296 CACCATGTCTCACTCTCTTGGT 59.699 50.000 0.00 0.00 39.20 3.67
3480 3946 2.301296 ACACCATGTCTCACTCTCTTGG 59.699 50.000 0.00 0.00 34.15 3.61
3481 3947 3.674528 ACACCATGTCTCACTCTCTTG 57.325 47.619 0.00 0.00 0.00 3.02
3482 3948 8.948401 ATATATACACCATGTCTCACTCTCTT 57.052 34.615 0.00 0.00 0.00 2.85
3508 3974 9.391227 AGAGAGAGAGGACATATGGAAAAATAT 57.609 33.333 7.80 0.00 0.00 1.28
3509 3975 8.789767 AGAGAGAGAGGACATATGGAAAAATA 57.210 34.615 7.80 0.00 0.00 1.40
3510 3976 7.688918 AGAGAGAGAGGACATATGGAAAAAT 57.311 36.000 7.80 0.00 0.00 1.82
3511 3977 7.502060 AAGAGAGAGAGGACATATGGAAAAA 57.498 36.000 7.80 0.00 0.00 1.94
3512 3978 6.183360 CGAAGAGAGAGAGGACATATGGAAAA 60.183 42.308 7.80 0.00 0.00 2.29
3513 3979 5.300539 CGAAGAGAGAGAGGACATATGGAAA 59.699 44.000 7.80 0.00 0.00 3.13
3514 3980 4.824537 CGAAGAGAGAGAGGACATATGGAA 59.175 45.833 7.80 0.00 0.00 3.53
3515 3981 4.141367 ACGAAGAGAGAGAGGACATATGGA 60.141 45.833 7.80 0.00 0.00 3.41
3516 3982 4.141287 ACGAAGAGAGAGAGGACATATGG 58.859 47.826 7.80 0.00 0.00 2.74
3517 3983 5.766150 AACGAAGAGAGAGAGGACATATG 57.234 43.478 0.00 0.00 0.00 1.78
3518 3984 6.126409 AGAAACGAAGAGAGAGAGGACATAT 58.874 40.000 0.00 0.00 0.00 1.78
3519 3985 5.502079 AGAAACGAAGAGAGAGAGGACATA 58.498 41.667 0.00 0.00 0.00 2.29
3520 3986 4.340617 AGAAACGAAGAGAGAGAGGACAT 58.659 43.478 0.00 0.00 0.00 3.06
3521 3987 3.757270 AGAAACGAAGAGAGAGAGGACA 58.243 45.455 0.00 0.00 0.00 4.02
3522 3988 4.776795 AAGAAACGAAGAGAGAGAGGAC 57.223 45.455 0.00 0.00 0.00 3.85
3523 3989 5.302059 TGAAAAGAAACGAAGAGAGAGAGGA 59.698 40.000 0.00 0.00 0.00 3.71
3524 3990 5.533482 TGAAAAGAAACGAAGAGAGAGAGG 58.467 41.667 0.00 0.00 0.00 3.69
3525 3991 6.212955 ACTGAAAAGAAACGAAGAGAGAGAG 58.787 40.000 0.00 0.00 0.00 3.20
3526 3992 6.039941 AGACTGAAAAGAAACGAAGAGAGAGA 59.960 38.462 0.00 0.00 0.00 3.10
3527 3993 6.143758 CAGACTGAAAAGAAACGAAGAGAGAG 59.856 42.308 0.00 0.00 0.00 3.20
3528 3994 5.980116 CAGACTGAAAAGAAACGAAGAGAGA 59.020 40.000 0.00 0.00 0.00 3.10
3529 3995 5.751028 ACAGACTGAAAAGAAACGAAGAGAG 59.249 40.000 10.08 0.00 0.00 3.20
3530 3996 5.661458 ACAGACTGAAAAGAAACGAAGAGA 58.339 37.500 10.08 0.00 0.00 3.10
3531 3997 5.975410 ACAGACTGAAAAGAAACGAAGAG 57.025 39.130 10.08 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.