Multiple sequence alignment - TraesCS5D01G148700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G148700 chr5D 100.000 4311 0 0 1 4311 237578409 237574099 0.000000e+00 7962.0
1 TraesCS5D01G148700 chr5D 85.764 576 64 12 109 679 538241258 538240696 1.030000e-165 593.0
2 TraesCS5D01G148700 chr5D 84.456 579 64 16 109 679 408295426 408295986 8.150000e-152 547.0
3 TraesCS5D01G148700 chr5D 82.939 592 73 15 109 691 122627244 122626672 3.850000e-140 508.0
4 TraesCS5D01G148700 chr5D 91.011 178 14 2 520 696 84379812 84379636 5.570000e-59 239.0
5 TraesCS5D01G148700 chr5D 97.479 119 1 2 1 118 421468191 421468308 7.310000e-48 202.0
6 TraesCS5D01G148700 chr5A 93.092 3011 128 38 673 3627 317693295 317696281 0.000000e+00 4335.0
7 TraesCS5D01G148700 chr5A 91.909 482 34 2 3752 4233 317892369 317892845 0.000000e+00 669.0
8 TraesCS5D01G148700 chr5A 94.958 119 6 0 3635 3753 317696229 317696347 2.050000e-43 187.0
9 TraesCS5D01G148700 chr5A 89.404 151 10 4 1 150 528332280 528332135 7.360000e-43 185.0
10 TraesCS5D01G148700 chr5A 83.168 101 14 2 4129 4227 578437787 578437688 5.940000e-14 89.8
11 TraesCS5D01G148700 chr5B 91.598 2071 91 32 673 2694 268112064 268114100 0.000000e+00 2784.0
12 TraesCS5D01G148700 chr5B 95.085 936 26 7 2706 3621 268114080 268115015 0.000000e+00 1456.0
13 TraesCS5D01G148700 chr5B 89.669 484 37 4 3638 4121 268114972 268115442 4.770000e-169 604.0
14 TraesCS5D01G148700 chr5B 80.986 142 21 6 4129 4267 506653578 506653716 1.640000e-19 108.0
15 TraesCS5D01G148700 chr5B 78.488 172 21 9 1732 1890 488186253 488186085 9.870000e-17 99.0
16 TraesCS5D01G148700 chr7D 90.210 572 20 7 109 677 75802615 75803153 0.000000e+00 713.0
17 TraesCS5D01G148700 chr7D 88.831 573 31 14 109 679 426174816 426175357 0.000000e+00 673.0
18 TraesCS5D01G148700 chr7D 85.739 575 61 15 109 677 560282841 560283400 4.800000e-164 588.0
19 TraesCS5D01G148700 chr7D 98.291 117 2 0 1 117 583637384 583637268 5.650000e-49 206.0
20 TraesCS5D01G148700 chr7D 78.395 162 28 7 4105 4262 216846348 216846506 9.870000e-17 99.0
21 TraesCS5D01G148700 chr7D 93.220 59 2 2 439 496 426175084 426175141 7.680000e-13 86.1
22 TraesCS5D01G148700 chr7D 93.103 58 3 1 439 496 75802899 75802955 2.760000e-12 84.2
23 TraesCS5D01G148700 chr2D 84.211 570 74 10 109 677 562352015 562351461 1.360000e-149 540.0
24 TraesCS5D01G148700 chr2D 94.340 159 7 1 519 677 567018860 567019016 4.310000e-60 243.0
25 TraesCS5D01G148700 chr2D 92.593 162 11 1 520 680 572790276 572790115 9.320000e-57 231.0
26 TraesCS5D01G148700 chr2D 97.458 118 3 0 1 118 331573159 331573276 7.310000e-48 202.0
27 TraesCS5D01G148700 chr2D 88.679 106 10 2 4163 4267 220342410 220342306 1.260000e-25 128.0
28 TraesCS5D01G148700 chr2D 77.451 204 39 7 4079 4280 55642192 55641994 9.800000e-22 115.0
29 TraesCS5D01G148700 chr6D 83.877 583 61 21 109 680 120665511 120666071 3.820000e-145 525.0
30 TraesCS5D01G148700 chr6D 94.340 159 5 1 519 677 10674647 10674493 1.550000e-59 241.0
31 TraesCS5D01G148700 chr6D 98.291 117 2 0 1 117 267002704 267002588 5.650000e-49 206.0
32 TraesCS5D01G148700 chr6D 83.594 128 21 0 552 679 443749264 443749137 2.110000e-23 121.0
33 TraesCS5D01G148700 chr4D 83.649 581 54 21 109 682 489629472 489628926 3.850000e-140 508.0
34 TraesCS5D01G148700 chr4D 95.000 160 8 0 520 679 81327127 81326968 7.160000e-63 252.0
35 TraesCS5D01G148700 chr4D 100.000 43 0 0 454 496 53420238 53420280 3.570000e-11 80.5
36 TraesCS5D01G148700 chr4D 90.323 62 4 2 436 496 493936430 493936490 3.570000e-11 80.5
37 TraesCS5D01G148700 chr6A 82.385 545 76 12 109 649 397973767 397973239 1.410000e-124 457.0
38 TraesCS5D01G148700 chr1D 94.340 159 8 1 519 677 334053339 334053182 4.310000e-60 243.0
39 TraesCS5D01G148700 chr1D 93.168 161 11 0 520 680 464397308 464397148 2.000000e-58 237.0
40 TraesCS5D01G148700 chr1D 81.098 164 19 10 4131 4290 164419069 164418914 2.110000e-23 121.0
41 TraesCS5D01G148700 chr1D 82.222 135 21 3 4130 4262 87101260 87101393 3.520000e-21 113.0
42 TraesCS5D01G148700 chr1D 97.826 46 1 0 451 496 394469515 394469470 3.570000e-11 80.5
43 TraesCS5D01G148700 chr3D 93.210 162 8 2 519 677 80217943 80217782 7.210000e-58 235.0
44 TraesCS5D01G148700 chr3D 94.531 128 7 0 1 128 313615029 313614902 9.460000e-47 198.0
45 TraesCS5D01G148700 chr3D 78.443 167 28 8 4105 4267 187889861 187890023 7.630000e-18 102.0
46 TraesCS5D01G148700 chr3A 91.971 137 8 3 1 134 738181412 738181548 5.690000e-44 189.0
47 TraesCS5D01G148700 chr3A 80.503 159 26 5 4105 4260 446326485 446326329 2.720000e-22 117.0
48 TraesCS5D01G148700 chr3A 89.655 58 5 1 439 496 235365344 235365288 5.980000e-09 73.1
49 TraesCS5D01G148700 chr2B 90.411 146 7 7 1 141 80157744 80157601 7.360000e-43 185.0
50 TraesCS5D01G148700 chr2B 84.091 132 17 4 4132 4261 359035239 359035368 1.630000e-24 124.0
51 TraesCS5D01G148700 chr2B 83.846 130 20 1 4133 4261 359847586 359847715 5.850000e-24 122.0
52 TraesCS5D01G148700 chr3B 89.404 151 9 6 1 146 235788945 235788797 2.650000e-42 183.0
53 TraesCS5D01G148700 chr3B 100.000 45 0 0 452 496 752179839 752179883 2.760000e-12 84.2
54 TraesCS5D01G148700 chr7A 74.786 468 77 30 3635 4080 589159728 589159280 5.730000e-39 172.0
55 TraesCS5D01G148700 chr7A 79.394 165 24 5 1736 1890 23462013 23461849 1.640000e-19 108.0
56 TraesCS5D01G148700 chr7A 84.685 111 14 3 4163 4271 214429172 214429281 1.640000e-19 108.0
57 TraesCS5D01G148700 chr2A 80.473 169 23 4 1732 1890 68227495 68227327 2.110000e-23 121.0
58 TraesCS5D01G148700 chr1A 79.503 161 21 10 4131 4287 235690343 235690495 2.120000e-18 104.0
59 TraesCS5D01G148700 chr1A 78.195 133 28 1 4131 4262 554339584 554339716 2.760000e-12 84.2
60 TraesCS5D01G148700 chr1A 78.195 133 28 1 4131 4262 554357101 554357233 2.760000e-12 84.2
61 TraesCS5D01G148700 chr6B 80.597 134 23 3 4130 4261 589136008 589135876 2.740000e-17 100.0
62 TraesCS5D01G148700 chr4B 100.000 30 0 0 4163 4192 609416880 609416909 6.020000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G148700 chr5D 237574099 237578409 4310 True 7962.000000 7962 100.000000 1 4311 1 chr5D.!!$R3 4310
1 TraesCS5D01G148700 chr5D 538240696 538241258 562 True 593.000000 593 85.764000 109 679 1 chr5D.!!$R4 570
2 TraesCS5D01G148700 chr5D 408295426 408295986 560 False 547.000000 547 84.456000 109 679 1 chr5D.!!$F1 570
3 TraesCS5D01G148700 chr5D 122626672 122627244 572 True 508.000000 508 82.939000 109 691 1 chr5D.!!$R2 582
4 TraesCS5D01G148700 chr5A 317693295 317696347 3052 False 2261.000000 4335 94.025000 673 3753 2 chr5A.!!$F2 3080
5 TraesCS5D01G148700 chr5B 268112064 268115442 3378 False 1614.666667 2784 92.117333 673 4121 3 chr5B.!!$F2 3448
6 TraesCS5D01G148700 chr7D 560282841 560283400 559 False 588.000000 588 85.739000 109 677 1 chr7D.!!$F2 568
7 TraesCS5D01G148700 chr7D 75802615 75803153 538 False 398.600000 713 91.656500 109 677 2 chr7D.!!$F3 568
8 TraesCS5D01G148700 chr7D 426174816 426175357 541 False 379.550000 673 91.025500 109 679 2 chr7D.!!$F4 570
9 TraesCS5D01G148700 chr2D 562351461 562352015 554 True 540.000000 540 84.211000 109 677 1 chr2D.!!$R3 568
10 TraesCS5D01G148700 chr6D 120665511 120666071 560 False 525.000000 525 83.877000 109 680 1 chr6D.!!$F1 571
11 TraesCS5D01G148700 chr4D 489628926 489629472 546 True 508.000000 508 83.649000 109 682 1 chr4D.!!$R2 573
12 TraesCS5D01G148700 chr6A 397973239 397973767 528 True 457.000000 457 82.385000 109 649 1 chr6A.!!$R1 540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
641 694 0.869454 CGCGGCAAAGCAGTTTTTGA 60.869 50.0 0.0 0.0 39.79 2.69 F
1844 1930 0.669318 TAAGCTTTGCGACACGGAGG 60.669 55.0 3.2 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2002 2098 0.476611 AAGAAGAGGGAAGGCTGGGT 60.477 55.0 0.0 0.0 0.0 4.51 R
3326 3473 0.746659 AGTCACCACAAAAAGGCTGC 59.253 50.0 0.0 0.0 0.0 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 7.311364 TGTTTCCGGTTAATACAATTCTAGC 57.689 36.000 0.00 0.00 0.00 3.42
32 33 6.879993 TGTTTCCGGTTAATACAATTCTAGCA 59.120 34.615 0.00 0.00 0.00 3.49
33 34 7.554835 TGTTTCCGGTTAATACAATTCTAGCAT 59.445 33.333 0.00 0.00 0.00 3.79
34 35 7.490962 TTCCGGTTAATACAATTCTAGCATG 57.509 36.000 0.00 0.00 0.00 4.06
35 36 6.822442 TCCGGTTAATACAATTCTAGCATGA 58.178 36.000 0.00 0.00 0.00 3.07
36 37 7.276658 TCCGGTTAATACAATTCTAGCATGAA 58.723 34.615 0.00 0.00 0.00 2.57
37 38 7.936847 TCCGGTTAATACAATTCTAGCATGAAT 59.063 33.333 0.00 0.00 38.19 2.57
38 39 9.214957 CCGGTTAATACAATTCTAGCATGAATA 57.785 33.333 0.00 0.00 35.82 1.75
95 96 9.907229 ATAATACTTTATTATTGCCTCTAGGGC 57.093 33.333 13.60 13.60 44.30 5.19
107 108 4.982241 CCTCTAGGGCATATTTCCTTCA 57.018 45.455 0.00 0.00 34.75 3.02
112 113 4.713792 AGGGCATATTTCCTTCACCTAG 57.286 45.455 0.00 0.00 0.00 3.02
192 194 3.491652 GCGAAAGGCTCTGGCGAC 61.492 66.667 0.00 0.00 39.81 5.19
313 315 1.944676 GGATGGCGACGATGACGAC 60.945 63.158 0.00 0.00 42.66 4.34
640 693 1.559336 CGCGGCAAAGCAGTTTTTG 59.441 52.632 0.00 0.00 40.25 2.44
641 694 0.869454 CGCGGCAAAGCAGTTTTTGA 60.869 50.000 0.00 0.00 39.79 2.69
727 783 4.393062 TGTAGAGTACGTACTACAAGCACC 59.607 45.833 27.44 12.74 43.54 5.01
730 786 4.082895 AGAGTACGTACTACAAGCACCAAG 60.083 45.833 27.44 0.00 36.50 3.61
874 936 2.618559 TGCATGTGATGTGCACCTACAT 60.619 45.455 15.69 17.81 46.76 2.29
924 987 7.382488 CCGAGACACAAAATATATACACTCCAG 59.618 40.741 0.00 0.00 0.00 3.86
984 1054 2.359975 GGAAGAACCCAGCGGTGG 60.360 66.667 26.78 26.78 43.71 4.61
1077 1147 2.506438 GAGTTCCTCGGGTTCGCG 60.506 66.667 0.00 0.00 36.13 5.87
1285 1355 4.144727 GAGAGGCGGAGGAGGGGA 62.145 72.222 0.00 0.00 0.00 4.81
1336 1406 2.747686 GCTTCGGTGACCCCAAGA 59.252 61.111 11.22 0.00 0.00 3.02
1360 1430 7.447545 AGAGGGTTAAAAGGTCTGTTACATTTC 59.552 37.037 0.00 0.00 41.02 2.17
1538 1622 5.730802 CACGGCAACTATACATTTGTTTACG 59.269 40.000 0.00 0.00 0.00 3.18
1555 1639 5.163581 TGTTTACGGTATCTCTAGAGCCAAC 60.164 44.000 15.35 11.73 0.00 3.77
1558 1642 3.767673 ACGGTATCTCTAGAGCCAACAAA 59.232 43.478 15.35 0.00 0.00 2.83
1560 1644 5.104900 ACGGTATCTCTAGAGCCAACAAATT 60.105 40.000 15.35 0.00 0.00 1.82
1561 1645 6.097839 ACGGTATCTCTAGAGCCAACAAATTA 59.902 38.462 15.35 0.00 0.00 1.40
1563 1647 6.706716 GGTATCTCTAGAGCCAACAAATTACC 59.293 42.308 15.35 9.78 0.00 2.85
1564 1648 6.567602 ATCTCTAGAGCCAACAAATTACCT 57.432 37.500 15.35 0.00 0.00 3.08
1565 1649 7.676683 ATCTCTAGAGCCAACAAATTACCTA 57.323 36.000 15.35 0.00 0.00 3.08
1566 1650 6.875076 TCTCTAGAGCCAACAAATTACCTAC 58.125 40.000 15.35 0.00 0.00 3.18
1567 1651 6.668283 TCTCTAGAGCCAACAAATTACCTACT 59.332 38.462 15.35 0.00 0.00 2.57
1568 1652 7.837689 TCTCTAGAGCCAACAAATTACCTACTA 59.162 37.037 15.35 0.00 0.00 1.82
1569 1653 7.779073 TCTAGAGCCAACAAATTACCTACTAC 58.221 38.462 0.00 0.00 0.00 2.73
1570 1654 5.416947 AGAGCCAACAAATTACCTACTACG 58.583 41.667 0.00 0.00 0.00 3.51
1571 1655 5.046807 AGAGCCAACAAATTACCTACTACGT 60.047 40.000 0.00 0.00 0.00 3.57
1572 1656 5.554070 AGCCAACAAATTACCTACTACGTT 58.446 37.500 0.00 0.00 0.00 3.99
1576 1660 4.256110 ACAAATTACCTACTACGTTGGCC 58.744 43.478 0.00 0.00 31.94 5.36
1844 1930 0.669318 TAAGCTTTGCGACACGGAGG 60.669 55.000 3.20 0.00 0.00 4.30
1888 1979 3.984749 GCGCGAGATCCCCTCCTC 61.985 72.222 12.10 0.00 38.71 3.71
2066 2184 2.055042 ACGGAGGCTGCTAGGAGTG 61.055 63.158 13.28 1.23 0.00 3.51
2076 2194 3.341823 CTGCTAGGAGTGCATTTCAAGT 58.658 45.455 2.51 0.00 39.86 3.16
2079 2197 5.312895 TGCTAGGAGTGCATTTCAAGTTTA 58.687 37.500 0.00 0.00 35.31 2.01
2206 2332 4.674281 ACTGTATCCCTTAGTAAGCTGC 57.326 45.455 4.22 0.00 0.00 5.25
2243 2371 7.906160 TCTGCGAATCTAAGTAACAAATTAGC 58.094 34.615 0.00 0.00 0.00 3.09
2444 2578 6.701340 AGTCTTGTGCATACTGAATACTTCA 58.299 36.000 0.00 0.00 38.17 3.02
2468 2602 4.021719 ACAATTTCTGTCTTGCATTCCCAG 60.022 41.667 0.00 0.00 29.87 4.45
2482 2616 4.392940 CATTCCCAGCAAATAGTCCCTAG 58.607 47.826 0.00 0.00 0.00 3.02
2540 2676 2.301583 TGCATACACCTAGCACACTCAA 59.698 45.455 0.00 0.00 32.55 3.02
2654 2796 6.507023 AGAGCAATTACCAAGTTTTTCACTG 58.493 36.000 0.00 0.00 35.12 3.66
2667 2809 8.761497 CAAGTTTTTCACTGTTACTCGAGATAA 58.239 33.333 21.68 11.07 35.12 1.75
2684 2826 8.244494 TCGAGATAATTCAGAGACAACAAAAG 57.756 34.615 0.00 0.00 0.00 2.27
3038 3185 9.713740 TGAACAAAATGCAAATAATGTTTTGAC 57.286 25.926 20.48 15.04 37.25 3.18
3118 3265 3.265737 TCCTAGTTAAGCAAAGCCATCCA 59.734 43.478 0.00 0.00 0.00 3.41
3200 3347 0.179134 GATTGAGCGACTACGGCAGT 60.179 55.000 0.00 0.00 41.47 4.40
3326 3473 2.518949 GATAACACAACATGGCGCAAG 58.481 47.619 10.83 0.00 43.44 4.01
3354 3501 5.580691 CCTTTTTGTGGTGACTTTTTCCTTC 59.419 40.000 0.00 0.00 0.00 3.46
3516 3663 9.003658 GTAGATATATTGTTTGGACCATCCTTG 57.996 37.037 0.00 0.00 37.46 3.61
3576 3726 2.421751 TCGGTTTGTGGGAAACAGAA 57.578 45.000 0.00 0.00 40.74 3.02
3578 3728 2.882137 TCGGTTTGTGGGAAACAGAATC 59.118 45.455 0.00 0.00 40.74 2.52
3579 3729 2.884639 CGGTTTGTGGGAAACAGAATCT 59.115 45.455 0.00 0.00 40.74 2.40
3580 3730 3.058224 CGGTTTGTGGGAAACAGAATCTC 60.058 47.826 0.00 0.00 40.74 2.75
3581 3731 4.145052 GGTTTGTGGGAAACAGAATCTCT 58.855 43.478 0.00 0.00 40.74 3.10
3582 3732 5.313712 GGTTTGTGGGAAACAGAATCTCTA 58.686 41.667 0.00 0.00 40.74 2.43
3583 3733 5.768164 GGTTTGTGGGAAACAGAATCTCTAA 59.232 40.000 0.00 0.00 40.74 2.10
3584 3734 6.264518 GGTTTGTGGGAAACAGAATCTCTAAA 59.735 38.462 0.00 0.00 40.74 1.85
3585 3735 7.363431 GTTTGTGGGAAACAGAATCTCTAAAG 58.637 38.462 0.00 0.00 40.74 1.85
3586 3736 5.560724 TGTGGGAAACAGAATCTCTAAAGG 58.439 41.667 0.00 0.00 33.78 3.11
3587 3737 5.309543 TGTGGGAAACAGAATCTCTAAAGGA 59.690 40.000 0.00 0.00 33.78 3.36
3588 3738 5.644206 GTGGGAAACAGAATCTCTAAAGGAC 59.356 44.000 0.00 0.00 0.00 3.85
3589 3739 5.309543 TGGGAAACAGAATCTCTAAAGGACA 59.690 40.000 0.00 0.00 0.00 4.02
3590 3740 5.644206 GGGAAACAGAATCTCTAAAGGACAC 59.356 44.000 0.00 0.00 0.00 3.67
3591 3741 6.468543 GGAAACAGAATCTCTAAAGGACACT 58.531 40.000 0.00 0.00 0.00 3.55
3592 3742 6.937465 GGAAACAGAATCTCTAAAGGACACTT 59.063 38.462 0.00 0.00 38.99 3.16
3594 3744 8.753497 AAACAGAATCTCTAAAGGACACTTTT 57.247 30.769 0.00 0.00 44.26 2.27
3595 3745 9.847224 AAACAGAATCTCTAAAGGACACTTTTA 57.153 29.630 0.00 0.00 44.26 1.52
3623 3773 2.977405 AAAAGTCGCAGCAAGATGAC 57.023 45.000 0.00 0.00 0.00 3.06
3624 3774 1.882912 AAAGTCGCAGCAAGATGACA 58.117 45.000 0.00 0.00 33.83 3.58
3625 3775 1.882912 AAGTCGCAGCAAGATGACAA 58.117 45.000 0.00 0.00 33.83 3.18
3626 3776 1.882912 AGTCGCAGCAAGATGACAAA 58.117 45.000 0.00 0.00 33.83 2.83
3627 3777 2.430465 AGTCGCAGCAAGATGACAAAT 58.570 42.857 0.00 0.00 33.83 2.32
3628 3778 2.161012 AGTCGCAGCAAGATGACAAATG 59.839 45.455 0.00 0.00 33.83 2.32
3629 3779 2.160219 GTCGCAGCAAGATGACAAATGA 59.840 45.455 0.00 0.00 0.00 2.57
3630 3780 2.813172 TCGCAGCAAGATGACAAATGAA 59.187 40.909 0.00 0.00 0.00 2.57
3631 3781 3.252944 TCGCAGCAAGATGACAAATGAAA 59.747 39.130 0.00 0.00 0.00 2.69
3632 3782 4.082625 TCGCAGCAAGATGACAAATGAAAT 60.083 37.500 0.00 0.00 0.00 2.17
3633 3783 4.031314 CGCAGCAAGATGACAAATGAAATG 59.969 41.667 0.00 0.00 0.00 2.32
3763 3916 8.978539 ACACAAAGAAAGAAAGAAAGAAAACAC 58.021 29.630 0.00 0.00 0.00 3.32
3765 3918 9.196552 ACAAAGAAAGAAAGAAAGAAAACACAG 57.803 29.630 0.00 0.00 0.00 3.66
3772 3925 9.541143 AAGAAAGAAAGAAAACACAGAAAAACA 57.459 25.926 0.00 0.00 0.00 2.83
3773 3926 9.541143 AGAAAGAAAGAAAACACAGAAAAACAA 57.459 25.926 0.00 0.00 0.00 2.83
3830 3983 2.158475 ACCATCAACATCAACCACCACT 60.158 45.455 0.00 0.00 0.00 4.00
3843 3996 3.239449 ACCACCACTGATGAGAACACTA 58.761 45.455 0.00 0.00 0.00 2.74
3845 3998 4.248859 CCACCACTGATGAGAACACTAAG 58.751 47.826 0.00 0.00 0.00 2.18
3847 4000 4.926238 CACCACTGATGAGAACACTAAGAC 59.074 45.833 0.00 0.00 0.00 3.01
3858 4011 7.386851 TGAGAACACTAAGACTATGGGAAAAG 58.613 38.462 0.00 0.00 0.00 2.27
3905 4058 2.507102 AACGATGTGCGAGCCTCG 60.507 61.111 10.36 10.36 44.57 4.63
3968 4121 3.182572 CAGTTTTCACTCCGAAGAGAACG 59.817 47.826 0.00 0.00 43.39 3.95
3980 4133 3.060473 CGAAGAGAACGTCCAAACAACTC 60.060 47.826 0.00 0.00 0.00 3.01
3985 4138 2.814280 ACGTCCAAACAACTCGAGAT 57.186 45.000 21.68 3.75 0.00 2.75
4000 4153 3.797039 TCGAGATAAATGCCTCCACAAG 58.203 45.455 0.00 0.00 0.00 3.16
4030 4183 1.075212 TGGAACACCATCATTGCCTCA 59.925 47.619 0.00 0.00 0.00 3.86
4037 4190 2.762327 ACCATCATTGCCTCATTCAACC 59.238 45.455 0.00 0.00 0.00 3.77
4050 4203 5.485620 CTCATTCAACCAGTTCAGATCAGA 58.514 41.667 0.00 0.00 0.00 3.27
4064 4217 7.442666 AGTTCAGATCAGACCTAAAGTTTTCAC 59.557 37.037 0.00 0.00 0.00 3.18
4068 4221 7.117523 CAGATCAGACCTAAAGTTTTCACTCTG 59.882 40.741 0.00 0.33 30.45 3.35
4077 4230 1.882623 GTTTTCACTCTGGAGCTTGGG 59.117 52.381 0.00 0.00 0.00 4.12
4083 4236 1.903183 ACTCTGGAGCTTGGGACTAAC 59.097 52.381 0.00 0.00 0.00 2.34
4086 4239 1.449778 GGAGCTTGGGACTAACGGC 60.450 63.158 0.00 0.00 0.00 5.68
4095 4248 1.084289 GGACTAACGGCGCAGATTTT 58.916 50.000 16.26 0.20 0.00 1.82
4096 4249 1.467342 GGACTAACGGCGCAGATTTTT 59.533 47.619 16.26 0.00 0.00 1.94
4108 4261 4.436986 GCGCAGATTTTTGTTAGTACCCTC 60.437 45.833 0.30 0.00 0.00 4.30
4110 4263 4.094442 GCAGATTTTTGTTAGTACCCTCGG 59.906 45.833 0.00 0.00 0.00 4.63
4121 4274 3.966543 CCCTCGGTTGGGTGCCTT 61.967 66.667 0.00 0.00 42.25 4.35
4122 4275 2.672996 CCTCGGTTGGGTGCCTTG 60.673 66.667 0.00 0.00 0.00 3.61
4123 4276 3.365265 CTCGGTTGGGTGCCTTGC 61.365 66.667 0.00 0.00 0.00 4.01
4126 4279 3.977244 GGTTGGGTGCCTTGCGTG 61.977 66.667 0.00 0.00 0.00 5.34
4127 4280 3.977244 GTTGGGTGCCTTGCGTGG 61.977 66.667 0.00 0.00 0.00 4.94
4137 4290 2.357760 TTGCGTGGCCGGAAGTAC 60.358 61.111 5.05 0.00 39.61 2.73
4138 4291 2.874664 TTGCGTGGCCGGAAGTACT 61.875 57.895 5.05 0.00 39.61 2.73
4139 4292 2.813908 GCGTGGCCGGAAGTACTG 60.814 66.667 5.05 0.00 33.68 2.74
4140 4293 2.967397 CGTGGCCGGAAGTACTGA 59.033 61.111 5.05 0.00 0.00 3.41
4141 4294 1.153823 CGTGGCCGGAAGTACTGAG 60.154 63.158 5.05 0.00 0.00 3.35
4142 4295 1.592400 CGTGGCCGGAAGTACTGAGA 61.592 60.000 5.05 0.00 0.00 3.27
4143 4296 0.108756 GTGGCCGGAAGTACTGAGAC 60.109 60.000 5.05 0.00 0.00 3.36
4144 4297 1.139095 GGCCGGAAGTACTGAGACG 59.861 63.158 5.05 0.00 0.00 4.18
4145 4298 1.139095 GCCGGAAGTACTGAGACGG 59.861 63.158 5.05 18.08 43.81 4.79
4146 4299 1.310933 GCCGGAAGTACTGAGACGGA 61.311 60.000 23.53 0.00 43.69 4.69
4147 4300 0.733729 CCGGAAGTACTGAGACGGAG 59.266 60.000 17.72 0.00 43.69 4.63
4148 4301 0.099082 CGGAAGTACTGAGACGGAGC 59.901 60.000 0.00 0.00 0.00 4.70
4149 4302 0.456628 GGAAGTACTGAGACGGAGCC 59.543 60.000 0.00 0.00 0.00 4.70
4150 4303 0.456628 GAAGTACTGAGACGGAGCCC 59.543 60.000 0.00 0.00 0.00 5.19
4174 4327 2.159181 CGCAAGTTACCCAGGTTCG 58.841 57.895 0.00 0.00 0.00 3.95
4175 4328 1.296056 CGCAAGTTACCCAGGTTCGG 61.296 60.000 0.00 0.00 0.00 4.30
4192 4345 3.991242 GGGCCTCCGAAGAGTAATC 57.009 57.895 0.84 0.00 38.58 1.75
4193 4346 0.393448 GGGCCTCCGAAGAGTAATCC 59.607 60.000 0.84 0.00 38.58 3.01
4194 4347 0.393448 GGCCTCCGAAGAGTAATCCC 59.607 60.000 0.00 0.00 38.58 3.85
4195 4348 0.393448 GCCTCCGAAGAGTAATCCCC 59.607 60.000 0.00 0.00 38.58 4.81
4196 4349 2.035331 GCCTCCGAAGAGTAATCCCCT 61.035 57.143 0.00 0.00 38.58 4.79
4197 4350 2.755549 GCCTCCGAAGAGTAATCCCCTA 60.756 54.545 0.00 0.00 38.58 3.53
4198 4351 2.892215 CCTCCGAAGAGTAATCCCCTAC 59.108 54.545 0.00 0.00 38.58 3.18
4199 4352 2.553172 CTCCGAAGAGTAATCCCCTACG 59.447 54.545 0.00 0.00 35.21 3.51
4200 4353 2.092212 TCCGAAGAGTAATCCCCTACGT 60.092 50.000 0.00 0.00 0.00 3.57
4201 4354 2.292845 CCGAAGAGTAATCCCCTACGTC 59.707 54.545 0.00 0.00 0.00 4.34
4202 4355 2.292845 CGAAGAGTAATCCCCTACGTCC 59.707 54.545 0.00 0.00 0.00 4.79
4203 4356 3.564264 GAAGAGTAATCCCCTACGTCCT 58.436 50.000 0.00 0.00 0.00 3.85
4204 4357 2.946785 AGAGTAATCCCCTACGTCCTG 58.053 52.381 0.00 0.00 0.00 3.86
4205 4358 1.340568 GAGTAATCCCCTACGTCCTGC 59.659 57.143 0.00 0.00 0.00 4.85
4206 4359 1.063114 AGTAATCCCCTACGTCCTGCT 60.063 52.381 0.00 0.00 0.00 4.24
4207 4360 1.761198 GTAATCCCCTACGTCCTGCTT 59.239 52.381 0.00 0.00 0.00 3.91
4208 4361 0.541863 AATCCCCTACGTCCTGCTTG 59.458 55.000 0.00 0.00 0.00 4.01
4209 4362 0.617820 ATCCCCTACGTCCTGCTTGT 60.618 55.000 0.00 0.00 0.00 3.16
4210 4363 0.834687 TCCCCTACGTCCTGCTTGTT 60.835 55.000 0.00 0.00 0.00 2.83
4211 4364 0.899720 CCCCTACGTCCTGCTTGTTA 59.100 55.000 0.00 0.00 0.00 2.41
4212 4365 1.485066 CCCCTACGTCCTGCTTGTTAT 59.515 52.381 0.00 0.00 0.00 1.89
4213 4366 2.093128 CCCCTACGTCCTGCTTGTTATT 60.093 50.000 0.00 0.00 0.00 1.40
4214 4367 2.936498 CCCTACGTCCTGCTTGTTATTG 59.064 50.000 0.00 0.00 0.00 1.90
4215 4368 3.596214 CCTACGTCCTGCTTGTTATTGT 58.404 45.455 0.00 0.00 0.00 2.71
4216 4369 4.000988 CCTACGTCCTGCTTGTTATTGTT 58.999 43.478 0.00 0.00 0.00 2.83
4217 4370 5.172934 CCTACGTCCTGCTTGTTATTGTTA 58.827 41.667 0.00 0.00 0.00 2.41
4218 4371 5.815740 CCTACGTCCTGCTTGTTATTGTTAT 59.184 40.000 0.00 0.00 0.00 1.89
4219 4372 6.315393 CCTACGTCCTGCTTGTTATTGTTATT 59.685 38.462 0.00 0.00 0.00 1.40
4220 4373 6.178239 ACGTCCTGCTTGTTATTGTTATTC 57.822 37.500 0.00 0.00 0.00 1.75
4221 4374 5.703592 ACGTCCTGCTTGTTATTGTTATTCA 59.296 36.000 0.00 0.00 0.00 2.57
4222 4375 6.128282 ACGTCCTGCTTGTTATTGTTATTCAG 60.128 38.462 0.00 0.00 0.00 3.02
4223 4376 6.555315 GTCCTGCTTGTTATTGTTATTCAGG 58.445 40.000 0.00 0.00 39.76 3.86
4224 4377 5.652014 TCCTGCTTGTTATTGTTATTCAGGG 59.348 40.000 0.00 0.00 39.11 4.45
4225 4378 5.418840 CCTGCTTGTTATTGTTATTCAGGGT 59.581 40.000 0.00 0.00 36.00 4.34
4226 4379 6.266168 TGCTTGTTATTGTTATTCAGGGTG 57.734 37.500 0.00 0.00 0.00 4.61
4227 4380 5.184864 TGCTTGTTATTGTTATTCAGGGTGG 59.815 40.000 0.00 0.00 0.00 4.61
4228 4381 5.417580 GCTTGTTATTGTTATTCAGGGTGGA 59.582 40.000 0.00 0.00 0.00 4.02
4229 4382 6.404734 GCTTGTTATTGTTATTCAGGGTGGAG 60.405 42.308 0.00 0.00 0.00 3.86
4230 4383 6.381498 TGTTATTGTTATTCAGGGTGGAGA 57.619 37.500 0.00 0.00 0.00 3.71
4231 4384 6.785076 TGTTATTGTTATTCAGGGTGGAGAA 58.215 36.000 0.00 0.00 0.00 2.87
4232 4385 7.410174 TGTTATTGTTATTCAGGGTGGAGAAT 58.590 34.615 0.00 0.00 38.05 2.40
4233 4386 8.553153 TGTTATTGTTATTCAGGGTGGAGAATA 58.447 33.333 0.00 0.00 36.07 1.75
4234 4387 8.837389 GTTATTGTTATTCAGGGTGGAGAATAC 58.163 37.037 0.00 0.00 36.68 1.89
4235 4388 5.367945 TGTTATTCAGGGTGGAGAATACC 57.632 43.478 0.00 0.00 36.68 2.73
4236 4389 4.141801 TGTTATTCAGGGTGGAGAATACCG 60.142 45.833 0.00 0.00 39.14 4.02
4237 4390 0.539986 TTCAGGGTGGAGAATACCGC 59.460 55.000 0.00 0.00 39.14 5.68
4238 4391 1.227263 CAGGGTGGAGAATACCGCG 60.227 63.158 0.00 0.00 40.87 6.46
4239 4392 1.684734 AGGGTGGAGAATACCGCGT 60.685 57.895 4.92 0.00 40.87 6.01
4240 4393 1.520787 GGGTGGAGAATACCGCGTG 60.521 63.158 4.92 0.00 40.87 5.34
4241 4394 1.514087 GGTGGAGAATACCGCGTGA 59.486 57.895 4.92 0.00 40.87 4.35
4242 4395 0.527817 GGTGGAGAATACCGCGTGAG 60.528 60.000 4.92 0.00 40.87 3.51
4243 4396 0.454600 GTGGAGAATACCGCGTGAGA 59.545 55.000 4.92 0.00 0.00 3.27
4244 4397 0.738975 TGGAGAATACCGCGTGAGAG 59.261 55.000 4.92 0.00 0.00 3.20
4253 4406 3.733236 CGCGTGAGAGGGAATACAA 57.267 52.632 0.00 0.00 0.00 2.41
4254 4407 2.225068 CGCGTGAGAGGGAATACAAT 57.775 50.000 0.00 0.00 0.00 2.71
4255 4408 1.860950 CGCGTGAGAGGGAATACAATG 59.139 52.381 0.00 0.00 0.00 2.82
4256 4409 2.213499 GCGTGAGAGGGAATACAATGG 58.787 52.381 0.00 0.00 0.00 3.16
4257 4410 2.420129 GCGTGAGAGGGAATACAATGGT 60.420 50.000 0.00 0.00 0.00 3.55
4258 4411 3.198068 CGTGAGAGGGAATACAATGGTG 58.802 50.000 0.00 0.00 0.00 4.17
4259 4412 3.369471 CGTGAGAGGGAATACAATGGTGT 60.369 47.826 0.00 0.00 42.09 4.16
4260 4413 4.142026 CGTGAGAGGGAATACAATGGTGTA 60.142 45.833 0.00 0.00 44.29 2.90
4272 4425 5.815233 ACAATGGTGTATAGAGAGATGGG 57.185 43.478 0.00 0.00 35.72 4.00
4273 4426 5.219739 ACAATGGTGTATAGAGAGATGGGT 58.780 41.667 0.00 0.00 35.72 4.51
4274 4427 6.382087 ACAATGGTGTATAGAGAGATGGGTA 58.618 40.000 0.00 0.00 35.72 3.69
4275 4428 6.267928 ACAATGGTGTATAGAGAGATGGGTAC 59.732 42.308 0.00 0.00 35.72 3.34
4276 4429 8.619440 ACAATGGTGTATAGAGAGATGGGTACC 61.619 44.444 2.17 2.17 43.60 3.34
4288 4441 3.618171 GGGTACCGAGCTTTGTTGA 57.382 52.632 5.65 0.00 40.86 3.18
4289 4442 2.109425 GGGTACCGAGCTTTGTTGAT 57.891 50.000 5.65 0.00 40.86 2.57
4290 4443 1.737793 GGGTACCGAGCTTTGTTGATG 59.262 52.381 5.65 0.00 40.86 3.07
4291 4444 2.423577 GGTACCGAGCTTTGTTGATGT 58.576 47.619 0.00 0.00 0.00 3.06
4292 4445 3.592059 GGTACCGAGCTTTGTTGATGTA 58.408 45.455 0.00 0.00 0.00 2.29
4293 4446 3.617263 GGTACCGAGCTTTGTTGATGTAG 59.383 47.826 0.00 0.00 0.00 2.74
4294 4447 3.402628 ACCGAGCTTTGTTGATGTAGT 57.597 42.857 0.00 0.00 0.00 2.73
4295 4448 3.067106 ACCGAGCTTTGTTGATGTAGTG 58.933 45.455 0.00 0.00 0.00 2.74
4296 4449 3.067106 CCGAGCTTTGTTGATGTAGTGT 58.933 45.455 0.00 0.00 0.00 3.55
4297 4450 3.120546 CCGAGCTTTGTTGATGTAGTGTG 60.121 47.826 0.00 0.00 0.00 3.82
4298 4451 3.120546 CGAGCTTTGTTGATGTAGTGTGG 60.121 47.826 0.00 0.00 0.00 4.17
4299 4452 4.065088 GAGCTTTGTTGATGTAGTGTGGA 58.935 43.478 0.00 0.00 0.00 4.02
4300 4453 4.460263 AGCTTTGTTGATGTAGTGTGGAA 58.540 39.130 0.00 0.00 0.00 3.53
4301 4454 4.275936 AGCTTTGTTGATGTAGTGTGGAAC 59.724 41.667 0.00 0.00 37.35 3.62
4302 4455 4.556699 GCTTTGTTGATGTAGTGTGGAACC 60.557 45.833 0.00 0.00 34.36 3.62
4303 4456 3.134574 TGTTGATGTAGTGTGGAACCC 57.865 47.619 0.00 0.00 34.36 4.11
4304 4457 2.708861 TGTTGATGTAGTGTGGAACCCT 59.291 45.455 0.00 0.00 34.36 4.34
4305 4458 3.904965 TGTTGATGTAGTGTGGAACCCTA 59.095 43.478 0.00 0.00 34.36 3.53
4306 4459 4.348461 TGTTGATGTAGTGTGGAACCCTAA 59.652 41.667 0.00 0.00 34.36 2.69
4307 4460 5.013704 TGTTGATGTAGTGTGGAACCCTAAT 59.986 40.000 0.00 0.00 34.36 1.73
4308 4461 5.097742 TGATGTAGTGTGGAACCCTAATG 57.902 43.478 0.00 0.00 34.36 1.90
4309 4462 4.534500 TGATGTAGTGTGGAACCCTAATGT 59.466 41.667 0.00 0.00 34.36 2.71
4310 4463 4.280436 TGTAGTGTGGAACCCTAATGTG 57.720 45.455 0.00 0.00 34.36 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 9.048446 GCTAGAATTGTATTAACCGGAAACATA 57.952 33.333 9.46 0.00 0.00 2.29
6 7 7.554835 TGCTAGAATTGTATTAACCGGAAACAT 59.445 33.333 9.46 0.00 0.00 2.71
7 8 6.879993 TGCTAGAATTGTATTAACCGGAAACA 59.120 34.615 9.46 1.34 0.00 2.83
8 9 7.311364 TGCTAGAATTGTATTAACCGGAAAC 57.689 36.000 9.46 0.00 0.00 2.78
9 10 7.771361 TCATGCTAGAATTGTATTAACCGGAAA 59.229 33.333 9.46 1.61 0.00 3.13
10 11 7.276658 TCATGCTAGAATTGTATTAACCGGAA 58.723 34.615 9.46 0.00 0.00 4.30
11 12 6.822442 TCATGCTAGAATTGTATTAACCGGA 58.178 36.000 9.46 0.00 0.00 5.14
12 13 7.490962 TTCATGCTAGAATTGTATTAACCGG 57.509 36.000 0.00 0.00 0.00 5.28
86 87 4.505742 GGTGAAGGAAATATGCCCTAGAGG 60.506 50.000 0.00 0.00 39.47 3.69
87 88 4.349342 AGGTGAAGGAAATATGCCCTAGAG 59.651 45.833 0.00 0.00 31.36 2.43
88 89 4.307259 AGGTGAAGGAAATATGCCCTAGA 58.693 43.478 0.00 0.00 31.36 2.43
89 90 4.713792 AGGTGAAGGAAATATGCCCTAG 57.286 45.455 0.00 0.00 31.36 3.02
90 91 5.071788 CACTAGGTGAAGGAAATATGCCCTA 59.928 44.000 0.00 0.00 35.23 3.53
91 92 4.047883 ACTAGGTGAAGGAAATATGCCCT 58.952 43.478 0.00 0.00 0.00 5.19
92 93 4.137543 CACTAGGTGAAGGAAATATGCCC 58.862 47.826 0.00 0.00 35.23 5.36
93 94 4.137543 CCACTAGGTGAAGGAAATATGCC 58.862 47.826 0.00 0.00 35.23 4.40
94 95 4.137543 CCCACTAGGTGAAGGAAATATGC 58.862 47.826 0.00 0.00 35.23 3.14
95 96 4.137543 GCCCACTAGGTGAAGGAAATATG 58.862 47.826 0.00 0.00 38.26 1.78
96 97 3.785887 TGCCCACTAGGTGAAGGAAATAT 59.214 43.478 0.00 0.00 38.26 1.28
97 98 3.186283 TGCCCACTAGGTGAAGGAAATA 58.814 45.455 0.00 0.00 38.26 1.40
98 99 1.992557 TGCCCACTAGGTGAAGGAAAT 59.007 47.619 0.00 0.00 38.26 2.17
99 100 1.440618 TGCCCACTAGGTGAAGGAAA 58.559 50.000 0.00 0.00 38.26 3.13
100 101 1.351017 CTTGCCCACTAGGTGAAGGAA 59.649 52.381 0.00 0.00 38.26 3.36
101 102 0.984230 CTTGCCCACTAGGTGAAGGA 59.016 55.000 0.00 0.00 38.26 3.36
102 103 0.035056 CCTTGCCCACTAGGTGAAGG 60.035 60.000 0.00 1.52 39.59 3.46
103 104 0.678048 GCCTTGCCCACTAGGTGAAG 60.678 60.000 0.00 0.00 40.55 3.02
104 105 1.378762 GCCTTGCCCACTAGGTGAA 59.621 57.895 0.00 0.00 40.55 3.18
105 106 3.077907 GCCTTGCCCACTAGGTGA 58.922 61.111 0.00 0.00 40.55 4.02
106 107 2.436646 CGCCTTGCCCACTAGGTG 60.437 66.667 0.00 0.00 41.74 4.00
107 108 4.410400 GCGCCTTGCCCACTAGGT 62.410 66.667 0.00 0.00 40.55 3.08
192 194 1.059692 GAACGATGTCACACTGCGATG 59.940 52.381 3.81 0.00 0.00 3.84
242 244 2.159382 GTCCAACCAACGGTCATCATT 58.841 47.619 0.00 0.00 33.12 2.57
313 315 3.364249 CTCCCAGTCGTCGTCGTCG 62.364 68.421 5.50 5.50 38.33 5.12
523 573 0.928922 CAGTGCGCAAAAATGCAACA 59.071 45.000 14.00 0.00 43.75 3.33
525 575 0.530211 AGCAGTGCGCAAAAATGCAA 60.530 45.000 28.50 0.00 46.13 4.08
721 777 2.675658 ATGGTGGTTACTTGGTGCTT 57.324 45.000 0.00 0.00 0.00 3.91
727 783 4.130118 GCTGGAGATATGGTGGTTACTTG 58.870 47.826 0.00 0.00 0.00 3.16
730 786 3.838244 TGCTGGAGATATGGTGGTTAC 57.162 47.619 0.00 0.00 0.00 2.50
874 936 3.627123 GCACATCACATGCAAGGTATGTA 59.373 43.478 9.99 0.00 42.88 2.29
904 966 8.765219 GTGTAGCTGGAGTGTATATATTTTGTG 58.235 37.037 0.00 0.00 0.00 3.33
924 987 3.190874 GCAAGTGTAGGAGATGTGTAGC 58.809 50.000 0.00 0.00 0.00 3.58
984 1054 3.185391 GCGCCATTTCTTGAGCTATCTAC 59.815 47.826 0.00 0.00 0.00 2.59
1336 1406 6.492429 GGAAATGTAACAGACCTTTTAACCCT 59.508 38.462 0.00 0.00 0.00 4.34
1442 1523 8.584157 TGTTTCTACCGTTTACTCTGGTATAAA 58.416 33.333 0.00 0.00 37.60 1.40
1488 1569 2.545946 GCCAACCAAATCGAGCTCTATC 59.454 50.000 12.85 0.00 0.00 2.08
1538 1622 6.706716 GGTAATTTGTTGGCTCTAGAGATACC 59.293 42.308 24.24 15.11 0.00 2.73
1555 1639 3.307782 CGGCCAACGTAGTAGGTAATTTG 59.692 47.826 2.24 0.00 45.00 2.32
1558 1642 2.877043 CGGCCAACGTAGTAGGTAAT 57.123 50.000 2.24 0.00 45.00 1.89
1570 1654 4.434713 AAATTACTGATTCACGGCCAAC 57.565 40.909 2.24 0.00 0.00 3.77
1571 1655 4.321601 CCAAAATTACTGATTCACGGCCAA 60.322 41.667 2.24 0.00 0.00 4.52
1572 1656 3.192422 CCAAAATTACTGATTCACGGCCA 59.808 43.478 2.24 0.00 0.00 5.36
1576 1660 7.327518 GGGTAAAACCAAAATTACTGATTCACG 59.672 37.037 0.00 0.00 41.02 4.35
1702 1787 4.091424 GGCGAGTCGAATCAAAATTTCAG 58.909 43.478 18.61 0.00 0.00 3.02
1703 1788 3.751175 AGGCGAGTCGAATCAAAATTTCA 59.249 39.130 18.61 0.00 0.00 2.69
1887 1978 0.658368 CGAAGAAGCGGATCTCGAGA 59.342 55.000 19.19 19.19 42.43 4.04
1888 1979 3.156401 CGAAGAAGCGGATCTCGAG 57.844 57.895 5.93 5.93 42.43 4.04
1973 2064 2.107953 GAGGAGCAGCCGCCTAAG 59.892 66.667 4.43 0.00 41.74 2.18
2002 2098 0.476611 AAGAAGAGGGAAGGCTGGGT 60.477 55.000 0.00 0.00 0.00 4.51
2104 2222 9.120538 ACATTTGAGTAATATTTACGCCTGAAT 57.879 29.630 0.00 0.00 0.00 2.57
2206 2332 5.536554 AGATTCGCAGAGTTTTGTGTATG 57.463 39.130 0.00 0.00 38.43 2.39
2243 2371 6.314400 CCAATATCCTGAAACAAAATTGCCAG 59.686 38.462 0.00 0.00 0.00 4.85
2345 2473 5.833340 AGAAGTAGAGTGAATACCTGGAGT 58.167 41.667 0.00 0.00 0.00 3.85
2444 2578 4.344679 TGGGAATGCAAGACAGAAATTGTT 59.655 37.500 0.00 0.00 41.05 2.83
2468 2602 5.240844 ACACACAAAACTAGGGACTATTTGC 59.759 40.000 0.00 0.00 41.79 3.68
2482 2616 7.540745 ACACTTATTTCTTCACACACACAAAAC 59.459 33.333 0.00 0.00 0.00 2.43
2596 2738 4.626287 GCTCATCCACTCCCAAATGAACTA 60.626 45.833 0.00 0.00 0.00 2.24
2597 2739 3.875369 GCTCATCCACTCCCAAATGAACT 60.875 47.826 0.00 0.00 0.00 3.01
2654 2796 7.968956 TGTTGTCTCTGAATTATCTCGAGTAAC 59.031 37.037 13.13 1.37 32.15 2.50
2667 2809 7.830099 AATTCTCCTTTTGTTGTCTCTGAAT 57.170 32.000 0.00 0.00 0.00 2.57
2684 2826 3.394674 TTTTTGCGGGGAAAATTCTCC 57.605 42.857 1.72 1.72 44.69 3.71
2717 2859 9.859152 TTTTGGGATTTCAATGGTTAAAATTCT 57.141 25.926 0.00 0.00 0.00 2.40
2910 3052 6.493458 ACGGATAAATTAGCTAAAATGGGCAT 59.507 34.615 10.85 0.00 0.00 4.40
3038 3185 7.621832 TTTTCATTCAGTAAATCTGTTTGCG 57.378 32.000 0.00 0.00 43.97 4.85
3118 3265 5.690865 TGGGATGAGTTTAAACAAGACACT 58.309 37.500 20.06 0.00 0.00 3.55
3200 3347 2.441375 TGATCTTCTGGTGGTGGAACAA 59.559 45.455 0.00 0.00 44.16 2.83
3326 3473 0.746659 AGTCACCACAAAAAGGCTGC 59.253 50.000 0.00 0.00 0.00 5.25
3453 3600 3.875134 CCAACACAATTATCGGTAGGGAC 59.125 47.826 0.00 0.00 0.00 4.46
3516 3663 9.202273 TGAAAATATCTTTACCAACACAAATGC 57.798 29.630 0.00 0.00 0.00 3.56
3543 3690 5.526111 CCACAAACCGAAGACCGAATAATAT 59.474 40.000 0.00 0.00 41.76 1.28
3603 3753 2.618241 TGTCATCTTGCTGCGACTTTTT 59.382 40.909 6.27 0.00 0.00 1.94
3604 3754 2.221169 TGTCATCTTGCTGCGACTTTT 58.779 42.857 6.27 0.00 0.00 2.27
3605 3755 1.882912 TGTCATCTTGCTGCGACTTT 58.117 45.000 6.27 0.00 0.00 2.66
3606 3756 1.882912 TTGTCATCTTGCTGCGACTT 58.117 45.000 6.27 0.00 0.00 3.01
3607 3757 1.882912 TTTGTCATCTTGCTGCGACT 58.117 45.000 6.27 0.00 0.00 4.18
3608 3758 2.160219 TCATTTGTCATCTTGCTGCGAC 59.840 45.455 0.00 0.00 0.00 5.19
3609 3759 2.425539 TCATTTGTCATCTTGCTGCGA 58.574 42.857 0.00 0.00 0.00 5.10
3610 3760 2.905959 TCATTTGTCATCTTGCTGCG 57.094 45.000 0.00 0.00 0.00 5.18
3611 3761 4.927425 ACATTTCATTTGTCATCTTGCTGC 59.073 37.500 0.00 0.00 0.00 5.25
3612 3762 7.416154 AAACATTTCATTTGTCATCTTGCTG 57.584 32.000 0.00 0.00 0.00 4.41
3613 3763 7.929785 AGAAAACATTTCATTTGTCATCTTGCT 59.070 29.630 5.71 0.00 0.00 3.91
3614 3764 8.080083 AGAAAACATTTCATTTGTCATCTTGC 57.920 30.769 5.71 0.00 0.00 4.01
3663 3816 5.437289 TTGTCATCTTGATGCGACTTTTT 57.563 34.783 5.78 0.00 0.00 1.94
3778 3931 3.866910 TGTAGTTCGCTTCGACAAACTTT 59.133 39.130 6.32 0.00 34.89 2.66
3779 3932 3.450578 TGTAGTTCGCTTCGACAAACTT 58.549 40.909 6.32 0.00 34.89 2.66
3780 3933 3.088194 TGTAGTTCGCTTCGACAAACT 57.912 42.857 0.00 0.00 34.89 2.66
3781 3934 3.427528 TGATGTAGTTCGCTTCGACAAAC 59.572 43.478 0.00 0.00 34.89 2.93
3782 3935 3.644823 TGATGTAGTTCGCTTCGACAAA 58.355 40.909 0.00 0.00 34.89 2.83
3783 3936 3.291809 TGATGTAGTTCGCTTCGACAA 57.708 42.857 0.00 0.00 34.89 3.18
3784 3937 3.179048 CATGATGTAGTTCGCTTCGACA 58.821 45.455 0.00 0.00 34.89 4.35
3785 3938 3.179830 ACATGATGTAGTTCGCTTCGAC 58.820 45.455 0.00 0.00 34.89 4.20
3786 3939 3.503827 ACATGATGTAGTTCGCTTCGA 57.496 42.857 0.00 0.00 0.00 3.71
3787 3940 5.481472 GTTTACATGATGTAGTTCGCTTCG 58.519 41.667 5.34 0.00 33.92 3.79
3788 3941 5.350365 TGGTTTACATGATGTAGTTCGCTTC 59.650 40.000 5.34 0.00 33.92 3.86
3789 3942 5.242434 TGGTTTACATGATGTAGTTCGCTT 58.758 37.500 5.34 0.00 33.92 4.68
3790 3943 4.827692 TGGTTTACATGATGTAGTTCGCT 58.172 39.130 5.34 0.00 33.92 4.93
3791 3944 5.293324 TGATGGTTTACATGATGTAGTTCGC 59.707 40.000 5.34 0.00 40.72 4.70
3792 3945 6.902224 TGATGGTTTACATGATGTAGTTCG 57.098 37.500 5.34 0.00 40.72 3.95
3830 3983 6.194967 TCCCATAGTCTTAGTGTTCTCATCA 58.805 40.000 0.00 0.00 0.00 3.07
3836 3989 6.128254 GCACTTTTCCCATAGTCTTAGTGTTC 60.128 42.308 0.00 0.00 35.42 3.18
3843 3996 4.985538 TGAAGCACTTTTCCCATAGTCTT 58.014 39.130 0.00 0.00 0.00 3.01
3845 3998 4.518970 TGTTGAAGCACTTTTCCCATAGTC 59.481 41.667 0.00 0.00 0.00 2.59
3847 4000 5.452078 TTGTTGAAGCACTTTTCCCATAG 57.548 39.130 0.00 0.00 0.00 2.23
3905 4058 0.679640 TGGGTGGATTTGACGATGGC 60.680 55.000 0.00 0.00 0.00 4.40
3906 4059 1.094785 GTGGGTGGATTTGACGATGG 58.905 55.000 0.00 0.00 0.00 3.51
3968 4121 5.324697 GCATTTATCTCGAGTTGTTTGGAC 58.675 41.667 13.13 0.00 0.00 4.02
3980 4133 2.874701 CCTTGTGGAGGCATTTATCTCG 59.125 50.000 0.00 0.00 39.09 4.04
3985 4138 1.377690 TCCCCTTGTGGAGGCATTTA 58.622 50.000 0.00 0.00 44.85 1.40
4000 4153 0.331278 TGGTGTTCCACATCATCCCC 59.669 55.000 0.00 0.00 33.64 4.81
4013 4166 3.433343 TGAATGAGGCAATGATGGTGTT 58.567 40.909 0.00 0.00 0.00 3.32
4019 4172 3.705051 ACTGGTTGAATGAGGCAATGAT 58.295 40.909 0.00 0.00 0.00 2.45
4020 4173 3.159213 ACTGGTTGAATGAGGCAATGA 57.841 42.857 0.00 0.00 0.00 2.57
4030 4183 4.288105 AGGTCTGATCTGAACTGGTTGAAT 59.712 41.667 18.40 0.00 31.99 2.57
4037 4190 7.442364 TGAAAACTTTAGGTCTGATCTGAACTG 59.558 37.037 25.65 14.15 35.38 3.16
4050 4203 4.103311 AGCTCCAGAGTGAAAACTTTAGGT 59.897 41.667 0.00 0.00 0.00 3.08
4064 4217 1.134965 CGTTAGTCCCAAGCTCCAGAG 60.135 57.143 0.00 0.00 0.00 3.35
4068 4221 1.449778 GCCGTTAGTCCCAAGCTCC 60.450 63.158 0.00 0.00 0.00 4.70
4077 4230 2.095919 ACAAAAATCTGCGCCGTTAGTC 60.096 45.455 4.18 0.00 0.00 2.59
4083 4236 2.611974 ACTAACAAAAATCTGCGCCG 57.388 45.000 4.18 0.00 0.00 6.46
4086 4239 4.201685 CGAGGGTACTAACAAAAATCTGCG 60.202 45.833 0.00 0.00 0.00 5.18
4095 4248 1.624813 CCCAACCGAGGGTACTAACAA 59.375 52.381 0.00 0.00 44.24 2.83
4096 4249 1.269012 CCCAACCGAGGGTACTAACA 58.731 55.000 0.00 0.00 44.24 2.41
4110 4263 3.977244 CCACGCAAGGCACCCAAC 61.977 66.667 0.00 0.00 46.39 3.77
4121 4274 3.307906 AGTACTTCCGGCCACGCA 61.308 61.111 2.24 0.00 39.22 5.24
4122 4275 2.813908 CAGTACTTCCGGCCACGC 60.814 66.667 2.24 0.00 39.22 5.34
4123 4276 1.153823 CTCAGTACTTCCGGCCACG 60.154 63.158 2.24 0.00 40.55 4.94
4124 4277 0.108756 GTCTCAGTACTTCCGGCCAC 60.109 60.000 2.24 0.00 0.00 5.01
4125 4278 1.592400 CGTCTCAGTACTTCCGGCCA 61.592 60.000 2.24 0.00 0.00 5.36
4126 4279 1.139095 CGTCTCAGTACTTCCGGCC 59.861 63.158 0.00 0.00 0.00 6.13
4127 4280 1.139095 CCGTCTCAGTACTTCCGGC 59.861 63.158 0.00 0.00 0.00 6.13
4128 4281 0.733729 CTCCGTCTCAGTACTTCCGG 59.266 60.000 11.23 11.23 36.83 5.14
4129 4282 0.099082 GCTCCGTCTCAGTACTTCCG 59.901 60.000 0.00 0.00 0.00 4.30
4130 4283 0.456628 GGCTCCGTCTCAGTACTTCC 59.543 60.000 0.00 0.00 0.00 3.46
4131 4284 0.456628 GGGCTCCGTCTCAGTACTTC 59.543 60.000 0.00 0.00 0.00 3.01
4132 4285 1.313812 CGGGCTCCGTCTCAGTACTT 61.314 60.000 0.00 0.00 42.73 2.24
4133 4286 1.749638 CGGGCTCCGTCTCAGTACT 60.750 63.158 5.56 0.00 42.73 2.73
4134 4287 2.799371 CGGGCTCCGTCTCAGTAC 59.201 66.667 5.56 0.00 42.73 2.73
4151 4304 1.574428 CTGGGTAACTTGCGTGTGC 59.426 57.895 0.00 0.00 43.20 4.57
4152 4305 0.534203 ACCTGGGTAACTTGCGTGTG 60.534 55.000 0.00 0.00 0.00 3.82
4153 4306 0.181824 AACCTGGGTAACTTGCGTGT 59.818 50.000 0.00 0.00 0.00 4.49
4154 4307 0.872388 GAACCTGGGTAACTTGCGTG 59.128 55.000 0.00 0.00 0.00 5.34
4155 4308 0.601841 CGAACCTGGGTAACTTGCGT 60.602 55.000 0.00 0.00 0.00 5.24
4156 4309 1.296056 CCGAACCTGGGTAACTTGCG 61.296 60.000 0.00 0.00 0.00 4.85
4157 4310 0.958876 CCCGAACCTGGGTAACTTGC 60.959 60.000 0.00 0.00 44.76 4.01
4158 4311 3.243128 CCCGAACCTGGGTAACTTG 57.757 57.895 0.00 0.00 44.76 3.16
4174 4327 0.393448 GGATTACTCTTCGGAGGCCC 59.607 60.000 0.00 0.00 45.78 5.80
4175 4328 0.393448 GGGATTACTCTTCGGAGGCC 59.607 60.000 0.00 0.00 45.78 5.19
4176 4329 0.393448 GGGGATTACTCTTCGGAGGC 59.607 60.000 0.00 0.00 45.78 4.70
4177 4330 2.089600 AGGGGATTACTCTTCGGAGG 57.910 55.000 0.00 0.00 45.78 4.30
4178 4331 2.553172 CGTAGGGGATTACTCTTCGGAG 59.447 54.545 0.00 0.00 46.82 4.63
4179 4332 2.092212 ACGTAGGGGATTACTCTTCGGA 60.092 50.000 0.00 0.00 0.00 4.55
4180 4333 2.292845 GACGTAGGGGATTACTCTTCGG 59.707 54.545 0.00 0.00 0.00 4.30
4181 4334 2.292845 GGACGTAGGGGATTACTCTTCG 59.707 54.545 0.00 0.00 0.00 3.79
4182 4335 3.318557 CAGGACGTAGGGGATTACTCTTC 59.681 52.174 0.00 0.00 0.00 2.87
4183 4336 3.297736 CAGGACGTAGGGGATTACTCTT 58.702 50.000 0.00 0.00 0.00 2.85
4184 4337 2.946785 CAGGACGTAGGGGATTACTCT 58.053 52.381 0.00 0.00 0.00 3.24
4185 4338 1.340568 GCAGGACGTAGGGGATTACTC 59.659 57.143 0.00 0.00 0.00 2.59
4186 4339 1.063114 AGCAGGACGTAGGGGATTACT 60.063 52.381 0.00 0.00 0.00 2.24
4187 4340 1.411041 AGCAGGACGTAGGGGATTAC 58.589 55.000 0.00 0.00 0.00 1.89
4188 4341 1.760613 CAAGCAGGACGTAGGGGATTA 59.239 52.381 0.00 0.00 0.00 1.75
4189 4342 0.541863 CAAGCAGGACGTAGGGGATT 59.458 55.000 0.00 0.00 0.00 3.01
4190 4343 0.617820 ACAAGCAGGACGTAGGGGAT 60.618 55.000 0.00 0.00 0.00 3.85
4191 4344 0.834687 AACAAGCAGGACGTAGGGGA 60.835 55.000 0.00 0.00 0.00 4.81
4192 4345 0.899720 TAACAAGCAGGACGTAGGGG 59.100 55.000 0.00 0.00 0.00 4.79
4193 4346 2.936498 CAATAACAAGCAGGACGTAGGG 59.064 50.000 0.00 0.00 0.00 3.53
4194 4347 3.596214 ACAATAACAAGCAGGACGTAGG 58.404 45.455 0.00 0.00 0.00 3.18
4195 4348 6.903883 ATAACAATAACAAGCAGGACGTAG 57.096 37.500 0.00 0.00 0.00 3.51
4196 4349 6.874664 TGAATAACAATAACAAGCAGGACGTA 59.125 34.615 0.00 0.00 0.00 3.57
4197 4350 5.703592 TGAATAACAATAACAAGCAGGACGT 59.296 36.000 0.00 0.00 0.00 4.34
4198 4351 6.176975 TGAATAACAATAACAAGCAGGACG 57.823 37.500 0.00 0.00 0.00 4.79
4199 4352 6.404734 CCCTGAATAACAATAACAAGCAGGAC 60.405 42.308 0.00 0.00 42.15 3.85
4200 4353 5.652014 CCCTGAATAACAATAACAAGCAGGA 59.348 40.000 0.00 0.00 42.15 3.86
4201 4354 5.418840 ACCCTGAATAACAATAACAAGCAGG 59.581 40.000 0.00 0.00 39.94 4.85
4202 4355 6.324819 CACCCTGAATAACAATAACAAGCAG 58.675 40.000 0.00 0.00 0.00 4.24
4203 4356 5.184864 CCACCCTGAATAACAATAACAAGCA 59.815 40.000 0.00 0.00 0.00 3.91
4204 4357 5.417580 TCCACCCTGAATAACAATAACAAGC 59.582 40.000 0.00 0.00 0.00 4.01
4205 4358 6.884295 TCTCCACCCTGAATAACAATAACAAG 59.116 38.462 0.00 0.00 0.00 3.16
4206 4359 6.785076 TCTCCACCCTGAATAACAATAACAA 58.215 36.000 0.00 0.00 0.00 2.83
4207 4360 6.381498 TCTCCACCCTGAATAACAATAACA 57.619 37.500 0.00 0.00 0.00 2.41
4208 4361 7.881775 ATTCTCCACCCTGAATAACAATAAC 57.118 36.000 0.00 0.00 31.91 1.89
4209 4362 7.996644 GGTATTCTCCACCCTGAATAACAATAA 59.003 37.037 0.00 0.00 40.57 1.40
4210 4363 7.514721 GGTATTCTCCACCCTGAATAACAATA 58.485 38.462 0.00 0.00 40.57 1.90
4211 4364 6.365520 GGTATTCTCCACCCTGAATAACAAT 58.634 40.000 0.00 0.00 40.57 2.71
4212 4365 5.628200 CGGTATTCTCCACCCTGAATAACAA 60.628 44.000 10.18 0.00 40.78 2.83
4213 4366 4.141801 CGGTATTCTCCACCCTGAATAACA 60.142 45.833 10.18 0.00 40.78 2.41
4214 4367 4.377897 CGGTATTCTCCACCCTGAATAAC 58.622 47.826 0.00 0.00 38.67 1.89
4215 4368 3.181458 GCGGTATTCTCCACCCTGAATAA 60.181 47.826 0.00 0.00 37.05 1.40
4216 4369 2.367567 GCGGTATTCTCCACCCTGAATA 59.632 50.000 0.00 0.00 35.01 1.75
4217 4370 1.141053 GCGGTATTCTCCACCCTGAAT 59.859 52.381 0.00 0.00 36.87 2.57
4218 4371 0.539986 GCGGTATTCTCCACCCTGAA 59.460 55.000 0.00 0.00 31.96 3.02
4219 4372 1.672854 CGCGGTATTCTCCACCCTGA 61.673 60.000 0.00 0.00 31.96 3.86
4220 4373 1.227263 CGCGGTATTCTCCACCCTG 60.227 63.158 0.00 0.00 31.96 4.45
4221 4374 1.684734 ACGCGGTATTCTCCACCCT 60.685 57.895 12.47 0.00 31.96 4.34
4222 4375 1.520787 CACGCGGTATTCTCCACCC 60.521 63.158 12.47 0.00 31.96 4.61
4223 4376 0.527817 CTCACGCGGTATTCTCCACC 60.528 60.000 12.47 0.00 0.00 4.61
4224 4377 0.454600 TCTCACGCGGTATTCTCCAC 59.545 55.000 12.47 0.00 0.00 4.02
4225 4378 0.738975 CTCTCACGCGGTATTCTCCA 59.261 55.000 12.47 0.00 0.00 3.86
4226 4379 0.030908 CCTCTCACGCGGTATTCTCC 59.969 60.000 12.47 0.00 0.00 3.71
4227 4380 0.030908 CCCTCTCACGCGGTATTCTC 59.969 60.000 12.47 0.00 0.00 2.87
4228 4381 0.395311 TCCCTCTCACGCGGTATTCT 60.395 55.000 12.47 0.00 0.00 2.40
4229 4382 0.458669 TTCCCTCTCACGCGGTATTC 59.541 55.000 12.47 0.00 0.00 1.75
4230 4383 1.120530 ATTCCCTCTCACGCGGTATT 58.879 50.000 12.47 0.00 0.00 1.89
4231 4384 1.612463 GTATTCCCTCTCACGCGGTAT 59.388 52.381 12.47 0.00 0.00 2.73
4232 4385 1.027357 GTATTCCCTCTCACGCGGTA 58.973 55.000 12.47 0.00 0.00 4.02
4233 4386 0.968901 TGTATTCCCTCTCACGCGGT 60.969 55.000 12.47 0.00 0.00 5.68
4234 4387 0.174845 TTGTATTCCCTCTCACGCGG 59.825 55.000 12.47 0.00 0.00 6.46
4235 4388 1.860950 CATTGTATTCCCTCTCACGCG 59.139 52.381 3.53 3.53 0.00 6.01
4236 4389 2.213499 CCATTGTATTCCCTCTCACGC 58.787 52.381 0.00 0.00 0.00 5.34
4237 4390 3.198068 CACCATTGTATTCCCTCTCACG 58.802 50.000 0.00 0.00 0.00 4.35
4238 4391 4.222124 ACACCATTGTATTCCCTCTCAC 57.778 45.455 0.00 0.00 32.60 3.51
4239 4392 7.073208 TCTATACACCATTGTATTCCCTCTCA 58.927 38.462 2.77 0.00 45.14 3.27
4240 4393 7.451877 TCTCTATACACCATTGTATTCCCTCTC 59.548 40.741 2.77 0.00 45.14 3.20
4241 4394 7.306013 TCTCTATACACCATTGTATTCCCTCT 58.694 38.462 2.77 0.00 45.14 3.69
4242 4395 7.451877 TCTCTCTATACACCATTGTATTCCCTC 59.548 40.741 2.77 0.00 45.14 4.30
4243 4396 7.306013 TCTCTCTATACACCATTGTATTCCCT 58.694 38.462 2.77 0.00 45.14 4.20
4244 4397 7.540474 TCTCTCTATACACCATTGTATTCCC 57.460 40.000 2.77 0.00 45.14 3.97
4245 4398 8.037758 CCATCTCTCTATACACCATTGTATTCC 58.962 40.741 2.77 0.00 45.14 3.01
4246 4399 8.037758 CCCATCTCTCTATACACCATTGTATTC 58.962 40.741 2.77 0.00 45.14 1.75
4247 4400 7.514127 ACCCATCTCTCTATACACCATTGTATT 59.486 37.037 2.77 0.00 45.14 1.89
4249 4402 6.382087 ACCCATCTCTCTATACACCATTGTA 58.618 40.000 0.00 0.00 42.53 2.41
4250 4403 5.219739 ACCCATCTCTCTATACACCATTGT 58.780 41.667 0.00 0.00 40.02 2.71
4251 4404 5.815233 ACCCATCTCTCTATACACCATTG 57.185 43.478 0.00 0.00 0.00 2.82
4252 4405 5.780793 GGTACCCATCTCTCTATACACCATT 59.219 44.000 0.00 0.00 0.00 3.16
4253 4406 5.334421 GGTACCCATCTCTCTATACACCAT 58.666 45.833 0.00 0.00 0.00 3.55
4254 4407 4.737578 GGTACCCATCTCTCTATACACCA 58.262 47.826 0.00 0.00 0.00 4.17
4255 4408 3.757493 CGGTACCCATCTCTCTATACACC 59.243 52.174 6.25 0.00 0.00 4.16
4256 4409 4.649692 TCGGTACCCATCTCTCTATACAC 58.350 47.826 6.25 0.00 0.00 2.90
4257 4410 4.806625 GCTCGGTACCCATCTCTCTATACA 60.807 50.000 6.25 0.00 0.00 2.29
4258 4411 3.690628 GCTCGGTACCCATCTCTCTATAC 59.309 52.174 6.25 0.00 0.00 1.47
4259 4412 3.587951 AGCTCGGTACCCATCTCTCTATA 59.412 47.826 6.25 0.00 0.00 1.31
4260 4413 2.377193 AGCTCGGTACCCATCTCTCTAT 59.623 50.000 6.25 0.00 0.00 1.98
4261 4414 1.775459 AGCTCGGTACCCATCTCTCTA 59.225 52.381 6.25 0.00 0.00 2.43
4262 4415 0.553819 AGCTCGGTACCCATCTCTCT 59.446 55.000 6.25 0.00 0.00 3.10
4263 4416 1.404843 AAGCTCGGTACCCATCTCTC 58.595 55.000 6.25 0.00 0.00 3.20
4264 4417 1.482593 CAAAGCTCGGTACCCATCTCT 59.517 52.381 6.25 0.00 0.00 3.10
4265 4418 1.207329 ACAAAGCTCGGTACCCATCTC 59.793 52.381 6.25 0.00 0.00 2.75
4266 4419 1.276622 ACAAAGCTCGGTACCCATCT 58.723 50.000 6.25 0.00 0.00 2.90
4267 4420 1.737793 CAACAAAGCTCGGTACCCATC 59.262 52.381 6.25 0.00 0.00 3.51
4268 4421 1.349688 TCAACAAAGCTCGGTACCCAT 59.650 47.619 6.25 0.00 0.00 4.00
4269 4422 0.759959 TCAACAAAGCTCGGTACCCA 59.240 50.000 6.25 0.00 0.00 4.51
4270 4423 1.737793 CATCAACAAAGCTCGGTACCC 59.262 52.381 6.25 0.00 0.00 3.69
4271 4424 2.423577 ACATCAACAAAGCTCGGTACC 58.576 47.619 0.16 0.16 0.00 3.34
4272 4425 4.091509 CACTACATCAACAAAGCTCGGTAC 59.908 45.833 0.00 0.00 0.00 3.34
4273 4426 4.242475 CACTACATCAACAAAGCTCGGTA 58.758 43.478 0.00 0.00 0.00 4.02
4274 4427 3.067106 CACTACATCAACAAAGCTCGGT 58.933 45.455 0.00 0.00 0.00 4.69
4275 4428 3.067106 ACACTACATCAACAAAGCTCGG 58.933 45.455 0.00 0.00 0.00 4.63
4276 4429 3.120546 CCACACTACATCAACAAAGCTCG 60.121 47.826 0.00 0.00 0.00 5.03
4277 4430 4.065088 TCCACACTACATCAACAAAGCTC 58.935 43.478 0.00 0.00 0.00 4.09
4278 4431 4.085357 TCCACACTACATCAACAAAGCT 57.915 40.909 0.00 0.00 0.00 3.74
4279 4432 4.537015 GTTCCACACTACATCAACAAAGC 58.463 43.478 0.00 0.00 0.00 3.51
4280 4433 4.023193 GGGTTCCACACTACATCAACAAAG 60.023 45.833 0.00 0.00 0.00 2.77
4281 4434 3.886505 GGGTTCCACACTACATCAACAAA 59.113 43.478 0.00 0.00 0.00 2.83
4282 4435 3.137544 AGGGTTCCACACTACATCAACAA 59.862 43.478 0.00 0.00 23.74 2.83
4283 4436 2.708861 AGGGTTCCACACTACATCAACA 59.291 45.455 0.00 0.00 23.74 3.33
4284 4437 3.418684 AGGGTTCCACACTACATCAAC 57.581 47.619 0.00 0.00 23.74 3.18
4285 4438 5.013704 ACATTAGGGTTCCACACTACATCAA 59.986 40.000 0.00 0.00 33.05 2.57
4286 4439 4.534500 ACATTAGGGTTCCACACTACATCA 59.466 41.667 0.00 0.00 33.05 3.07
4287 4440 4.876107 CACATTAGGGTTCCACACTACATC 59.124 45.833 0.00 0.00 33.05 3.06
4288 4441 4.843728 CACATTAGGGTTCCACACTACAT 58.156 43.478 0.00 0.00 33.05 2.29
4289 4442 4.280436 CACATTAGGGTTCCACACTACA 57.720 45.455 0.00 0.00 33.05 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.