Multiple sequence alignment - TraesCS5D01G147800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G147800 chr5D 100.000 2746 0 0 2008 4753 234064987 234062242 0.000000e+00 5072.0
1 TraesCS5D01G147800 chr5D 100.000 1703 0 0 1 1703 234066994 234065292 0.000000e+00 3145.0
2 TraesCS5D01G147800 chr5D 96.512 86 3 0 1231 1316 373834945 373835030 4.960000e-30 143.0
3 TraesCS5D01G147800 chr5D 93.506 77 5 0 3700 3776 234063219 234063143 1.080000e-21 115.0
4 TraesCS5D01G147800 chr5D 93.506 77 5 0 3776 3852 234063295 234063219 1.080000e-21 115.0
5 TraesCS5D01G147800 chr5D 76.884 199 33 7 4208 4405 33020627 33020813 3.030000e-17 100.0
6 TraesCS5D01G147800 chr5B 92.591 2146 93 40 2070 4177 270634180 270636297 0.000000e+00 3022.0
7 TraesCS5D01G147800 chr5B 94.645 803 16 5 452 1232 270632532 270633329 0.000000e+00 1219.0
8 TraesCS5D01G147800 chr5B 93.177 469 20 7 1 469 270631773 270632229 0.000000e+00 678.0
9 TraesCS5D01G147800 chr5B 90.159 315 28 3 4419 4731 270664277 270664590 1.590000e-109 407.0
10 TraesCS5D01G147800 chr5B 92.578 256 10 4 1315 1570 270633328 270633574 4.520000e-95 359.0
11 TraesCS5D01G147800 chr5B 87.204 211 22 5 4201 4410 270636362 270636568 7.950000e-58 235.0
12 TraesCS5D01G147800 chr5B 92.969 128 9 0 1567 1694 270633756 270633883 2.260000e-43 187.0
13 TraesCS5D01G147800 chr5B 94.805 77 4 0 3776 3852 270635821 270635897 2.320000e-23 121.0
14 TraesCS5D01G147800 chr5A 92.466 1752 69 21 2044 3776 320221326 320223033 0.000000e+00 2446.0
15 TraesCS5D01G147800 chr5A 90.563 1208 68 27 31 1232 320219488 320220655 0.000000e+00 1557.0
16 TraesCS5D01G147800 chr5A 94.444 360 11 6 1315 1666 320220654 320221012 3.230000e-151 545.0
17 TraesCS5D01G147800 chr5A 86.611 239 19 3 3771 3997 320222953 320223190 7.900000e-63 252.0
18 TraesCS5D01G147800 chr5A 80.745 161 29 2 4251 4410 571776681 571776522 1.800000e-24 124.0
19 TraesCS5D01G147800 chr7D 81.675 191 32 3 4221 4410 578916483 578916295 6.370000e-34 156.0
20 TraesCS5D01G147800 chr7D 92.929 99 5 2 1231 1328 311872935 311872838 4.960000e-30 143.0
21 TraesCS5D01G147800 chr7D 79.268 164 30 4 4249 4410 117747581 117747420 1.400000e-20 111.0
22 TraesCS5D01G147800 chr4B 81.122 196 33 4 4216 4410 654522304 654522496 2.290000e-33 154.0
23 TraesCS5D01G147800 chr3D 96.667 90 3 0 1228 1317 415158280 415158369 2.960000e-32 150.0
24 TraesCS5D01G147800 chr3D 89.908 109 10 1 1221 1328 531156185 531156293 6.410000e-29 139.0
25 TraesCS5D01G147800 chr1B 96.667 90 3 0 1227 1316 498863837 498863926 2.960000e-32 150.0
26 TraesCS5D01G147800 chr1B 93.878 98 4 2 1230 1326 61251338 61251242 3.830000e-31 147.0
27 TraesCS5D01G147800 chr4D 92.308 104 8 0 1221 1324 9296457 9296560 1.070000e-31 148.0
28 TraesCS5D01G147800 chr7A 80.928 194 30 5 4221 4410 670871165 670870975 3.830000e-31 147.0
29 TraesCS5D01G147800 chr6B 92.157 102 7 1 1230 1331 642728818 642728718 4.960000e-30 143.0
30 TraesCS5D01G147800 chr2A 88.235 119 9 5 1229 1343 159582116 159581999 2.310000e-28 137.0
31 TraesCS5D01G147800 chr3B 80.892 157 26 4 4201 4356 263744119 263744272 2.320000e-23 121.0
32 TraesCS5D01G147800 chr7B 87.209 86 10 1 4649 4734 39631875 39631791 3.920000e-16 97.1
33 TraesCS5D01G147800 chr2D 84.694 98 14 1 4619 4715 143255160 143255257 3.920000e-16 97.1
34 TraesCS5D01G147800 chr3A 77.876 113 24 1 4621 4732 436455227 436455339 8.530000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G147800 chr5D 234062242 234066994 4752 True 2111.750000 5072 96.753 1 4753 4 chr5D.!!$R1 4752
1 TraesCS5D01G147800 chr5B 270631773 270636568 4795 False 831.571429 3022 92.567 1 4410 7 chr5B.!!$F2 4409
2 TraesCS5D01G147800 chr5A 320219488 320223190 3702 False 1200.000000 2446 91.021 31 3997 4 chr5A.!!$F1 3966

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
46 47 1.002746 TCCGCATTTGTAGCCTGCA 60.003 52.632 0.00 0.0 35.64 4.41 F
214 219 1.338020 GCAAAGAGTGGGTGGTTCTTG 59.662 52.381 0.00 0.0 31.89 3.02 F
1103 1451 0.326048 CATGAGGTCTCTCCACCCCT 60.326 60.000 0.00 0.0 39.23 4.79 F
2503 3050 0.380733 CCGCGGAAATAGAAAAGGCC 59.619 55.000 24.07 0.0 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1047 1395 1.271127 GGAGGGAAGAAGAGGCAGCT 61.271 60.000 0.0 0.00 0.00 4.24 R
1300 1648 2.764572 GAGAATTACTCCCTCCGTTCCA 59.235 50.000 0.0 0.00 39.53 3.53 R
3018 3566 1.273048 GGAATGCCACTGAAATGCACA 59.727 47.619 0.0 0.00 37.92 4.57 R
4287 4953 0.106967 TGCACTTGGTACTGTTGCCA 60.107 50.000 0.0 0.52 35.32 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 2.033448 TTCCGGCTCCGCATTTGT 59.967 55.556 0.00 0.00 38.24 2.83
46 47 1.002746 TCCGCATTTGTAGCCTGCA 60.003 52.632 0.00 0.00 35.64 4.41
85 86 3.682292 GAGCCCGCGGATTTCCAGT 62.682 63.158 30.73 0.37 35.14 4.00
95 96 2.661594 GGATTTCCAGTTTGTCGTTGC 58.338 47.619 0.00 0.00 35.64 4.17
214 219 1.338020 GCAAAGAGTGGGTGGTTCTTG 59.662 52.381 0.00 0.00 31.89 3.02
215 220 2.930950 CAAAGAGTGGGTGGTTCTTGA 58.069 47.619 0.00 0.00 31.89 3.02
216 221 3.287222 CAAAGAGTGGGTGGTTCTTGAA 58.713 45.455 0.00 0.00 31.89 2.69
350 355 4.929808 ACAACTTGCGTAGTTAGAGAATGG 59.070 41.667 3.98 0.00 45.29 3.16
411 416 9.065798 TGGTTTAGTTTACCGCTTTACTTTATT 57.934 29.630 0.00 0.00 38.55 1.40
455 780 6.363065 AGCATGGAGTGATATGTCTCAAAAT 58.637 36.000 0.00 0.00 32.93 1.82
488 813 6.281405 CGGCTAATAGAGGTGTAGAATGTTT 58.719 40.000 0.00 0.00 0.00 2.83
489 814 6.201044 CGGCTAATAGAGGTGTAGAATGTTTG 59.799 42.308 0.00 0.00 0.00 2.93
490 815 6.017852 GGCTAATAGAGGTGTAGAATGTTTGC 60.018 42.308 0.00 0.00 0.00 3.68
494 819 4.327680 AGAGGTGTAGAATGTTTGCTTCC 58.672 43.478 0.00 0.00 0.00 3.46
513 838 4.521536 TCCAGCTATGTACCTAGTGTCT 57.478 45.455 6.99 0.00 0.00 3.41
946 1294 9.745018 CCATTCATATTCACCTATACCTTCATT 57.255 33.333 0.00 0.00 0.00 2.57
970 1318 1.342819 AGGCCGTCATCATCTAAGAGC 59.657 52.381 0.00 0.00 0.00 4.09
1047 1395 4.141390 ACCAAGAGCAAGAAGAAGAAGGAA 60.141 41.667 0.00 0.00 0.00 3.36
1103 1451 0.326048 CATGAGGTCTCTCCACCCCT 60.326 60.000 0.00 0.00 39.23 4.79
1232 1580 6.045318 GGAGTTAGGGGACGTTTCTAAATAC 58.955 44.000 0.00 0.00 0.00 1.89
1233 1581 6.127225 GGAGTTAGGGGACGTTTCTAAATACT 60.127 42.308 0.00 0.00 0.00 2.12
1234 1582 6.871844 AGTTAGGGGACGTTTCTAAATACTC 58.128 40.000 0.00 0.00 0.00 2.59
1235 1583 4.750021 AGGGGACGTTTCTAAATACTCC 57.250 45.455 0.00 0.00 0.00 3.85
1236 1584 3.453717 AGGGGACGTTTCTAAATACTCCC 59.546 47.826 0.00 0.00 34.07 4.30
1237 1585 3.453717 GGGGACGTTTCTAAATACTCCCT 59.546 47.826 11.73 0.00 34.68 4.20
1238 1586 4.442612 GGGGACGTTTCTAAATACTCCCTC 60.443 50.000 11.73 0.00 34.68 4.30
1239 1587 4.442612 GGGACGTTTCTAAATACTCCCTCC 60.443 50.000 0.00 0.00 33.04 4.30
1240 1588 4.357996 GACGTTTCTAAATACTCCCTCCG 58.642 47.826 0.00 0.00 0.00 4.63
1241 1589 3.766051 ACGTTTCTAAATACTCCCTCCGT 59.234 43.478 0.00 0.00 0.00 4.69
1242 1590 4.221482 ACGTTTCTAAATACTCCCTCCGTT 59.779 41.667 0.00 0.00 0.00 4.44
1243 1591 4.802563 CGTTTCTAAATACTCCCTCCGTTC 59.197 45.833 0.00 0.00 0.00 3.95
1244 1592 5.393896 CGTTTCTAAATACTCCCTCCGTTCT 60.394 44.000 0.00 0.00 0.00 3.01
1245 1593 6.183360 CGTTTCTAAATACTCCCTCCGTTCTA 60.183 42.308 0.00 0.00 0.00 2.10
1246 1594 7.550712 GTTTCTAAATACTCCCTCCGTTCTAA 58.449 38.462 0.00 0.00 0.00 2.10
1247 1595 7.722949 TTCTAAATACTCCCTCCGTTCTAAA 57.277 36.000 0.00 0.00 0.00 1.85
1248 1596 7.722949 TCTAAATACTCCCTCCGTTCTAAAA 57.277 36.000 0.00 0.00 0.00 1.52
1249 1597 8.315220 TCTAAATACTCCCTCCGTTCTAAAAT 57.685 34.615 0.00 0.00 0.00 1.82
1250 1598 9.425248 TCTAAATACTCCCTCCGTTCTAAAATA 57.575 33.333 0.00 0.00 0.00 1.40
1251 1599 9.694137 CTAAATACTCCCTCCGTTCTAAAATAG 57.306 37.037 0.00 0.00 0.00 1.73
1252 1600 7.909485 AATACTCCCTCCGTTCTAAAATAGA 57.091 36.000 0.00 0.00 0.00 1.98
1253 1601 8.493787 AATACTCCCTCCGTTCTAAAATAGAT 57.506 34.615 0.00 0.00 34.22 1.98
1254 1602 6.163135 ACTCCCTCCGTTCTAAAATAGATG 57.837 41.667 0.00 0.00 34.22 2.90
1255 1603 5.897824 ACTCCCTCCGTTCTAAAATAGATGA 59.102 40.000 0.00 0.00 34.22 2.92
1256 1604 6.041069 ACTCCCTCCGTTCTAAAATAGATGAG 59.959 42.308 0.00 0.00 34.22 2.90
1257 1605 4.991687 CCCTCCGTTCTAAAATAGATGAGC 59.008 45.833 0.00 0.00 34.22 4.26
1258 1606 4.991687 CCTCCGTTCTAAAATAGATGAGCC 59.008 45.833 0.00 0.00 34.22 4.70
1259 1607 5.453339 CCTCCGTTCTAAAATAGATGAGCCA 60.453 44.000 0.00 0.00 34.22 4.75
1260 1608 5.984725 TCCGTTCTAAAATAGATGAGCCAA 58.015 37.500 0.00 0.00 34.22 4.52
1261 1609 5.815740 TCCGTTCTAAAATAGATGAGCCAAC 59.184 40.000 0.00 0.00 34.22 3.77
1262 1610 5.817816 CCGTTCTAAAATAGATGAGCCAACT 59.182 40.000 0.00 0.00 34.22 3.16
1263 1611 6.316390 CCGTTCTAAAATAGATGAGCCAACTT 59.684 38.462 0.00 0.00 34.22 2.66
1264 1612 7.148239 CCGTTCTAAAATAGATGAGCCAACTTT 60.148 37.037 0.00 0.00 34.22 2.66
1265 1613 7.693951 CGTTCTAAAATAGATGAGCCAACTTTG 59.306 37.037 0.00 0.00 34.22 2.77
1266 1614 8.515414 GTTCTAAAATAGATGAGCCAACTTTGT 58.485 33.333 0.00 0.00 34.22 2.83
1267 1615 9.733556 TTCTAAAATAGATGAGCCAACTTTGTA 57.266 29.630 0.00 0.00 34.22 2.41
1268 1616 9.162764 TCTAAAATAGATGAGCCAACTTTGTAC 57.837 33.333 0.00 0.00 0.00 2.90
1269 1617 9.167311 CTAAAATAGATGAGCCAACTTTGTACT 57.833 33.333 0.00 0.00 0.00 2.73
1271 1619 9.515226 AAAATAGATGAGCCAACTTTGTACTAA 57.485 29.630 0.00 0.00 0.00 2.24
1272 1620 8.494016 AATAGATGAGCCAACTTTGTACTAAC 57.506 34.615 0.00 0.00 0.00 2.34
1273 1621 6.115448 AGATGAGCCAACTTTGTACTAACT 57.885 37.500 0.00 0.00 0.00 2.24
1274 1622 6.534634 AGATGAGCCAACTTTGTACTAACTT 58.465 36.000 0.00 0.00 0.00 2.66
1275 1623 6.998673 AGATGAGCCAACTTTGTACTAACTTT 59.001 34.615 0.00 0.00 0.00 2.66
1276 1624 6.371809 TGAGCCAACTTTGTACTAACTTTG 57.628 37.500 0.00 0.00 0.00 2.77
1277 1625 5.298276 TGAGCCAACTTTGTACTAACTTTGG 59.702 40.000 15.71 15.71 36.01 3.28
1278 1626 5.198207 AGCCAACTTTGTACTAACTTTGGT 58.802 37.500 18.73 9.28 35.46 3.67
1279 1627 6.358991 AGCCAACTTTGTACTAACTTTGGTA 58.641 36.000 18.73 0.00 35.46 3.25
1280 1628 6.261603 AGCCAACTTTGTACTAACTTTGGTAC 59.738 38.462 18.73 8.31 43.06 3.34
1297 1645 5.772393 TGGTACAAAGTTGGGTCATCTAT 57.228 39.130 0.00 0.00 31.92 1.98
1298 1646 6.134535 TGGTACAAAGTTGGGTCATCTATT 57.865 37.500 0.00 0.00 31.92 1.73
1299 1647 6.548321 TGGTACAAAGTTGGGTCATCTATTT 58.452 36.000 0.00 0.00 31.92 1.40
1300 1648 7.007723 TGGTACAAAGTTGGGTCATCTATTTT 58.992 34.615 0.00 0.00 31.92 1.82
1301 1649 7.040062 TGGTACAAAGTTGGGTCATCTATTTTG 60.040 37.037 0.00 0.00 31.92 2.44
1302 1650 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
1303 1651 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
1304 1652 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
1305 1653 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
1306 1654 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
1307 1655 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
1308 1656 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
1309 1657 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
1310 1658 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
1311 1659 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
1312 1660 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
1313 1661 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
1314 1662 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
1315 1663 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
1316 1664 4.778958 TCTATTTTGGAACGGAGGGAGTAA 59.221 41.667 0.00 0.00 0.00 2.24
1328 1676 4.402793 CGGAGGGAGTAATTCTCTTCAAGA 59.597 45.833 0.00 0.00 36.51 3.02
1369 1717 3.635331 CAACAGAGCAATTGGTCACTTG 58.365 45.455 32.68 26.92 44.42 3.16
1370 1718 2.936202 ACAGAGCAATTGGTCACTTGT 58.064 42.857 32.68 25.76 44.42 3.16
1371 1719 3.290710 ACAGAGCAATTGGTCACTTGTT 58.709 40.909 32.68 13.49 44.42 2.83
1372 1720 4.460263 ACAGAGCAATTGGTCACTTGTTA 58.540 39.130 32.68 0.00 44.42 2.41
1373 1721 4.887071 ACAGAGCAATTGGTCACTTGTTAA 59.113 37.500 32.68 0.00 44.42 2.01
1374 1722 5.536161 ACAGAGCAATTGGTCACTTGTTAAT 59.464 36.000 32.68 11.51 44.42 1.40
1598 2145 6.427853 TCATGTGTCTAGTTGGTTGAATTCAG 59.572 38.462 8.41 0.00 0.00 3.02
1630 2177 6.253727 GTCAACTGTATCGTCCTAGTCAAATG 59.746 42.308 0.00 0.00 0.00 2.32
1636 2183 4.002906 TCGTCCTAGTCAAATGTTGCTT 57.997 40.909 0.00 0.00 0.00 3.91
1666 2213 2.634453 TGAGGACATATGATGCGGACAT 59.366 45.455 10.38 0.00 39.98 3.06
1690 2237 6.347859 TGTTGTACCCTGTTTCTTGTTTTT 57.652 33.333 0.00 0.00 0.00 1.94
1694 2241 7.324354 TGTACCCTGTTTCTTGTTTTTCTAC 57.676 36.000 0.00 0.00 0.00 2.59
1695 2242 5.847111 ACCCTGTTTCTTGTTTTTCTACC 57.153 39.130 0.00 0.00 0.00 3.18
1696 2243 5.265989 ACCCTGTTTCTTGTTTTTCTACCA 58.734 37.500 0.00 0.00 0.00 3.25
1700 2247 7.320399 CCTGTTTCTTGTTTTTCTACCAAAGT 58.680 34.615 0.00 0.00 0.00 2.66
1701 2248 7.275560 CCTGTTTCTTGTTTTTCTACCAAAGTG 59.724 37.037 0.00 0.00 0.00 3.16
1702 2249 7.887381 TGTTTCTTGTTTTTCTACCAAAGTGA 58.113 30.769 0.00 0.00 0.00 3.41
2032 2579 7.945033 ACAACATAACCAATTCACACAAATC 57.055 32.000 0.00 0.00 0.00 2.17
2033 2580 7.495901 ACAACATAACCAATTCACACAAATCA 58.504 30.769 0.00 0.00 0.00 2.57
2034 2581 7.984050 ACAACATAACCAATTCACACAAATCAA 59.016 29.630 0.00 0.00 0.00 2.57
2035 2582 8.991026 CAACATAACCAATTCACACAAATCAAT 58.009 29.630 0.00 0.00 0.00 2.57
2036 2583 8.537049 ACATAACCAATTCACACAAATCAATG 57.463 30.769 0.00 0.00 0.00 2.82
2037 2584 8.366401 ACATAACCAATTCACACAAATCAATGA 58.634 29.630 0.00 0.00 0.00 2.57
2038 2585 9.205719 CATAACCAATTCACACAAATCAATGAA 57.794 29.630 0.00 0.00 35.64 2.57
2039 2586 7.718272 AACCAATTCACACAAATCAATGAAG 57.282 32.000 0.00 0.00 34.71 3.02
2040 2587 6.819284 ACCAATTCACACAAATCAATGAAGT 58.181 32.000 0.00 0.00 34.71 3.01
2041 2588 7.950512 ACCAATTCACACAAATCAATGAAGTA 58.049 30.769 0.00 0.00 34.71 2.24
2042 2589 8.587608 ACCAATTCACACAAATCAATGAAGTAT 58.412 29.630 0.00 0.00 34.71 2.12
2071 2618 5.184287 TCATGCACACAAAGATCATTGTCAT 59.816 36.000 13.17 11.01 41.44 3.06
2152 2699 5.772393 TGTATTGTAGTGTTCATTCCCCT 57.228 39.130 0.00 0.00 0.00 4.79
2260 2807 6.915544 TTTCACAGCAATGTCTGAGATATC 57.084 37.500 10.68 0.00 34.53 1.63
2262 2809 5.598769 TCACAGCAATGTCTGAGATATCTG 58.401 41.667 10.74 11.84 37.51 2.90
2294 2841 4.555262 GGAGAGAATTCGATAGCCTCTTG 58.445 47.826 0.00 0.00 34.67 3.02
2309 2856 2.025887 CCTCTTGTATGTTCAGGGGCTT 60.026 50.000 0.00 0.00 0.00 4.35
2503 3050 0.380733 CCGCGGAAATAGAAAAGGCC 59.619 55.000 24.07 0.00 0.00 5.19
2552 3100 6.079712 AGAATGGTAAGCCTAGTGGAAAAT 57.920 37.500 0.00 0.00 34.57 1.82
2605 3153 5.843673 TCTATCAACACAAGGCAAAAACA 57.156 34.783 0.00 0.00 0.00 2.83
2805 3353 2.819115 ACACAGATTGAGCAGCTATCG 58.181 47.619 0.00 0.00 34.51 2.92
2820 3368 3.063997 AGCTATCGAATTTTCAGTTGCGG 59.936 43.478 0.00 0.00 0.00 5.69
2846 3394 9.209175 GGTTCATGATCAGGTAATGTAAGATAC 57.791 37.037 7.33 0.00 0.00 2.24
3017 3565 2.397044 AGAGTCCATCATCCCTCCTC 57.603 55.000 0.00 0.00 0.00 3.71
3018 3566 1.865595 AGAGTCCATCATCCCTCCTCT 59.134 52.381 0.00 0.00 0.00 3.69
3045 3593 0.895100 TCAGTGGCATTCCAAGGTGC 60.895 55.000 0.00 0.00 45.53 5.01
3156 3704 4.882842 TCAGGTTTGCTTAATTTTCCCC 57.117 40.909 0.00 0.00 0.00 4.81
3199 3748 2.930682 CGCCTTCCAAGCTTAACTAGAC 59.069 50.000 0.00 0.00 0.00 2.59
3231 3781 9.753674 TTCATTGAAGGTTTCCATTTATAGTCT 57.246 29.630 0.00 0.00 0.00 3.24
3271 3835 4.758674 CAGCAATGGCATGTATAAGCTACT 59.241 41.667 0.00 0.00 44.61 2.57
3272 3836 4.999950 AGCAATGGCATGTATAAGCTACTC 59.000 41.667 0.00 0.00 44.61 2.59
3273 3837 4.154918 GCAATGGCATGTATAAGCTACTCC 59.845 45.833 0.00 0.00 40.72 3.85
3274 3838 5.555017 CAATGGCATGTATAAGCTACTCCT 58.445 41.667 0.00 0.00 0.00 3.69
3275 3839 6.701340 CAATGGCATGTATAAGCTACTCCTA 58.299 40.000 0.00 0.00 0.00 2.94
3276 3840 5.723672 TGGCATGTATAAGCTACTCCTAC 57.276 43.478 0.00 0.00 0.00 3.18
3277 3841 4.527038 TGGCATGTATAAGCTACTCCTACC 59.473 45.833 0.00 0.00 0.00 3.18
3278 3842 4.380655 GGCATGTATAAGCTACTCCTACCG 60.381 50.000 0.00 0.00 0.00 4.02
3279 3843 4.458295 GCATGTATAAGCTACTCCTACCGA 59.542 45.833 0.00 0.00 0.00 4.69
3353 3922 4.202461 GGGCTGACATATGTGGAATCCTTA 60.202 45.833 14.43 0.00 0.00 2.69
3386 3955 8.692710 AGTATTGATGACATTGAGAATGCAATT 58.307 29.630 0.00 0.00 42.69 2.32
3470 4039 1.009829 GTGCTTCGGCTGAATTCGAT 58.990 50.000 8.78 0.00 42.37 3.59
3480 4049 3.495100 GGCTGAATTCGATGAGGTATGGT 60.495 47.826 0.04 0.00 0.00 3.55
3496 4065 7.290248 TGAGGTATGGTTTGGTTTATTTTTCCA 59.710 33.333 0.00 0.00 0.00 3.53
3515 4084 3.900601 TCCATTTGCACCAGTTTACCAAT 59.099 39.130 0.00 0.00 0.00 3.16
3558 4137 5.105635 ACCGTCAATTTTCAAGATGCATGAT 60.106 36.000 2.46 0.00 0.00 2.45
3563 4142 8.965172 GTCAATTTTCAAGATGCATGATACATC 58.035 33.333 2.46 0.00 43.49 3.06
3728 4310 2.159787 CGATTTCGCTGAACTGACCAAG 60.160 50.000 0.00 0.00 0.00 3.61
3809 4391 1.939934 CGCTGAACTGACCAAACTTCA 59.060 47.619 0.00 0.00 0.00 3.02
3812 4394 3.378427 GCTGAACTGACCAAACTTCAAGT 59.622 43.478 0.00 0.00 0.00 3.16
3856 4438 4.789784 TGCTGTAAAAATACTGCGGTTTC 58.210 39.130 1.99 0.00 44.48 2.78
4002 4597 1.024579 CGTGCAATGTCCCCTACACC 61.025 60.000 0.00 0.00 42.09 4.16
4003 4598 0.328258 GTGCAATGTCCCCTACACCT 59.672 55.000 0.00 0.00 42.09 4.00
4004 4599 1.557832 GTGCAATGTCCCCTACACCTA 59.442 52.381 0.00 0.00 42.09 3.08
4005 4600 1.557832 TGCAATGTCCCCTACACCTAC 59.442 52.381 0.00 0.00 42.09 3.18
4006 4601 1.557832 GCAATGTCCCCTACACCTACA 59.442 52.381 0.00 0.00 42.09 2.74
4007 4602 2.679930 GCAATGTCCCCTACACCTACAC 60.680 54.545 0.00 0.00 42.09 2.90
4008 4603 1.481871 ATGTCCCCTACACCTACACG 58.518 55.000 0.00 0.00 42.09 4.49
4009 4604 0.112995 TGTCCCCTACACCTACACGT 59.887 55.000 0.00 0.00 31.43 4.49
4046 4641 4.680237 CGTCCTTGGACGCAGCCA 62.680 66.667 25.93 0.00 41.77 4.75
4060 4655 3.096495 GCCAGGCCACCCCTCATA 61.096 66.667 5.01 0.00 44.09 2.15
4061 4656 2.919043 CCAGGCCACCCCTCATAC 59.081 66.667 5.01 0.00 44.09 2.39
4062 4657 2.505982 CAGGCCACCCCTCATACG 59.494 66.667 5.01 0.00 44.09 3.06
4067 4684 1.823295 CCACCCCTCATACGTCCTG 59.177 63.158 0.00 0.00 0.00 3.86
4068 4685 1.144057 CACCCCTCATACGTCCTGC 59.856 63.158 0.00 0.00 0.00 4.85
4070 4687 2.808206 CCCCTCATACGTCCTGCCC 61.808 68.421 0.00 0.00 0.00 5.36
4092 4709 3.181497 CGGCAGGAACATACCTCAAATTG 60.181 47.826 0.00 0.00 38.32 2.32
4094 4711 4.016444 GCAGGAACATACCTCAAATTGGA 58.984 43.478 0.00 0.00 38.32 3.53
4095 4712 4.142381 GCAGGAACATACCTCAAATTGGAC 60.142 45.833 0.00 0.00 38.32 4.02
4098 4715 5.251700 AGGAACATACCTCAAATTGGACTCT 59.748 40.000 0.00 0.00 34.98 3.24
4099 4716 5.946377 GGAACATACCTCAAATTGGACTCTT 59.054 40.000 0.00 0.00 0.00 2.85
4100 4717 6.094186 GGAACATACCTCAAATTGGACTCTTC 59.906 42.308 0.00 0.00 0.00 2.87
4101 4718 6.126863 ACATACCTCAAATTGGACTCTTCA 57.873 37.500 0.00 0.00 0.00 3.02
4102 4719 6.542821 ACATACCTCAAATTGGACTCTTCAA 58.457 36.000 0.00 0.00 0.00 2.69
4103 4720 6.656693 ACATACCTCAAATTGGACTCTTCAAG 59.343 38.462 0.00 0.00 0.00 3.02
4104 4721 5.053978 ACCTCAAATTGGACTCTTCAAGT 57.946 39.130 0.00 0.00 42.42 3.16
4112 4729 2.442056 ACTCTTCAAGTCCGGCAGT 58.558 52.632 0.00 0.00 30.02 4.40
4113 4730 0.318762 ACTCTTCAAGTCCGGCAGTC 59.681 55.000 0.00 0.00 30.02 3.51
4114 4731 0.390472 CTCTTCAAGTCCGGCAGTCC 60.390 60.000 0.00 0.00 0.00 3.85
4115 4732 1.118965 TCTTCAAGTCCGGCAGTCCA 61.119 55.000 0.00 0.00 0.00 4.02
4116 4733 0.250295 CTTCAAGTCCGGCAGTCCAA 60.250 55.000 0.00 0.00 0.00 3.53
4117 4734 0.181587 TTCAAGTCCGGCAGTCCAAA 59.818 50.000 0.00 0.00 0.00 3.28
4118 4735 0.400213 TCAAGTCCGGCAGTCCAAAT 59.600 50.000 0.00 0.00 0.00 2.32
4119 4736 1.202879 TCAAGTCCGGCAGTCCAAATT 60.203 47.619 0.00 0.00 0.00 1.82
4120 4737 1.613437 CAAGTCCGGCAGTCCAAATTT 59.387 47.619 0.00 0.00 0.00 1.82
4121 4738 2.817258 CAAGTCCGGCAGTCCAAATTTA 59.183 45.455 0.00 0.00 0.00 1.40
4122 4739 3.366052 AGTCCGGCAGTCCAAATTTAT 57.634 42.857 0.00 0.00 0.00 1.40
4123 4740 3.016736 AGTCCGGCAGTCCAAATTTATG 58.983 45.455 0.00 0.00 0.00 1.90
4124 4741 1.748493 TCCGGCAGTCCAAATTTATGC 59.252 47.619 0.00 7.82 36.16 3.14
4125 4742 1.476085 CCGGCAGTCCAAATTTATGCA 59.524 47.619 14.80 0.00 38.63 3.96
4126 4743 2.101249 CCGGCAGTCCAAATTTATGCAT 59.899 45.455 3.79 3.79 38.63 3.96
4127 4744 3.430651 CCGGCAGTCCAAATTTATGCATT 60.431 43.478 3.54 0.00 38.63 3.56
4128 4745 4.202101 CCGGCAGTCCAAATTTATGCATTA 60.202 41.667 3.54 0.00 38.63 1.90
4129 4746 4.739716 CGGCAGTCCAAATTTATGCATTAC 59.260 41.667 3.54 0.00 38.63 1.89
4130 4747 5.659463 GGCAGTCCAAATTTATGCATTACA 58.341 37.500 3.54 0.00 38.63 2.41
4131 4748 5.519927 GGCAGTCCAAATTTATGCATTACAC 59.480 40.000 3.54 0.00 38.63 2.90
4132 4749 5.229887 GCAGTCCAAATTTATGCATTACACG 59.770 40.000 3.54 0.00 36.88 4.49
4133 4750 5.229887 CAGTCCAAATTTATGCATTACACGC 59.770 40.000 3.54 0.00 0.00 5.34
4145 4762 0.601576 TTACACGCCATTGTCGCACT 60.602 50.000 0.00 0.00 0.00 4.40
4147 4764 0.601576 ACACGCCATTGTCGCACTTA 60.602 50.000 0.00 0.00 0.00 2.24
4177 4794 9.950496 AATAAATGTTGGTGCCAAAAATACATA 57.050 25.926 5.09 0.00 37.70 2.29
4178 4795 9.950496 ATAAATGTTGGTGCCAAAAATACATAA 57.050 25.926 5.09 0.00 37.70 1.90
4179 4796 8.860780 AAATGTTGGTGCCAAAAATACATAAT 57.139 26.923 5.09 0.00 37.70 1.28
4181 4798 6.763355 TGTTGGTGCCAAAAATACATAATGT 58.237 32.000 5.09 0.00 37.70 2.71
4182 4799 7.220030 TGTTGGTGCCAAAAATACATAATGTT 58.780 30.769 5.09 0.00 37.70 2.71
4183 4800 7.172190 TGTTGGTGCCAAAAATACATAATGTTG 59.828 33.333 5.09 0.00 37.70 3.33
4184 4801 6.763355 TGGTGCCAAAAATACATAATGTTGT 58.237 32.000 0.00 0.00 0.00 3.32
4185 4802 6.648310 TGGTGCCAAAAATACATAATGTTGTG 59.352 34.615 0.00 0.00 0.00 3.33
4186 4803 6.402011 GGTGCCAAAAATACATAATGTTGTGC 60.402 38.462 0.00 0.00 0.00 4.57
4187 4804 5.641209 TGCCAAAAATACATAATGTTGTGCC 59.359 36.000 0.00 0.00 0.00 5.01
4188 4805 5.874261 GCCAAAAATACATAATGTTGTGCCT 59.126 36.000 0.00 0.00 0.00 4.75
4189 4806 6.035975 GCCAAAAATACATAATGTTGTGCCTC 59.964 38.462 0.00 0.00 0.00 4.70
4208 4825 4.333926 GCCTCTCTAATAGCCAACAACTTG 59.666 45.833 0.00 0.00 0.00 3.16
4209 4826 4.333926 CCTCTCTAATAGCCAACAACTTGC 59.666 45.833 0.00 0.00 0.00 4.01
4210 4827 4.905429 TCTCTAATAGCCAACAACTTGCA 58.095 39.130 0.00 0.00 0.00 4.08
4211 4828 4.695455 TCTCTAATAGCCAACAACTTGCAC 59.305 41.667 0.00 0.00 0.00 4.57
4212 4829 3.756434 TCTAATAGCCAACAACTTGCACC 59.244 43.478 0.00 0.00 0.00 5.01
4214 4831 1.028905 TAGCCAACAACTTGCACCAC 58.971 50.000 0.00 0.00 0.00 4.16
4215 4832 1.588667 GCCAACAACTTGCACCACG 60.589 57.895 0.00 0.00 0.00 4.94
4217 4834 1.938814 CAACAACTTGCACCACGCG 60.939 57.895 3.53 3.53 46.97 6.01
4218 4835 3.749735 AACAACTTGCACCACGCGC 62.750 57.895 5.73 0.00 46.97 6.86
4264 4930 3.386078 TGAGGTATGTGCTCTCCTTCATC 59.614 47.826 0.00 0.00 0.00 2.92
4265 4931 3.640967 GAGGTATGTGCTCTCCTTCATCT 59.359 47.826 0.00 0.00 0.00 2.90
4266 4932 3.387374 AGGTATGTGCTCTCCTTCATCTG 59.613 47.826 0.00 0.00 0.00 2.90
4279 4945 2.252535 TCATCTGGACCATCTCACCA 57.747 50.000 0.00 0.00 0.00 4.17
4287 4953 2.615493 GGACCATCTCACCAACGACATT 60.615 50.000 0.00 0.00 0.00 2.71
4312 4978 2.586425 ACAGTACCAAGTGCAAGCATT 58.414 42.857 0.00 0.00 0.00 3.56
4313 4979 2.958355 ACAGTACCAAGTGCAAGCATTT 59.042 40.909 0.00 0.00 0.00 2.32
4314 4980 4.141287 ACAGTACCAAGTGCAAGCATTTA 58.859 39.130 2.41 0.00 0.00 1.40
4352 5019 7.042523 GCATTTCTGCTTAGCAAAGAAAAAGAA 60.043 33.333 20.17 10.36 45.32 2.52
4354 5021 6.699575 TCTGCTTAGCAAAGAAAAAGAAGT 57.300 33.333 8.68 0.00 38.41 3.01
4355 5022 7.100458 TCTGCTTAGCAAAGAAAAAGAAGTT 57.900 32.000 8.68 0.00 38.41 2.66
4356 5023 6.974622 TCTGCTTAGCAAAGAAAAAGAAGTTG 59.025 34.615 8.68 0.00 38.41 3.16
4357 5024 6.042143 TGCTTAGCAAAGAAAAAGAAGTTGG 58.958 36.000 3.67 0.00 34.76 3.77
4358 5025 6.042777 GCTTAGCAAAGAAAAAGAAGTTGGT 58.957 36.000 0.00 0.00 34.37 3.67
4359 5026 6.535150 GCTTAGCAAAGAAAAAGAAGTTGGTT 59.465 34.615 0.00 0.00 34.37 3.67
4388 5055 2.761208 TCCCTAGTGAGCTTGAAGTAGC 59.239 50.000 0.00 0.00 41.53 3.58
4390 5057 2.480416 CCTAGTGAGCTTGAAGTAGCCG 60.480 54.545 0.00 0.00 42.20 5.52
4410 5077 2.883828 CGTGTGCCTCCACTCCCTT 61.884 63.158 0.00 0.00 42.54 3.95
4411 5078 1.541310 CGTGTGCCTCCACTCCCTTA 61.541 60.000 0.00 0.00 42.54 2.69
4412 5079 0.690762 GTGTGCCTCCACTCCCTTAA 59.309 55.000 0.00 0.00 42.54 1.85
4413 5080 1.282157 GTGTGCCTCCACTCCCTTAAT 59.718 52.381 0.00 0.00 42.54 1.40
4414 5081 1.992557 TGTGCCTCCACTCCCTTAATT 59.007 47.619 0.00 0.00 42.54 1.40
4415 5082 3.054655 GTGTGCCTCCACTCCCTTAATTA 60.055 47.826 0.00 0.00 42.54 1.40
4416 5083 3.785887 TGTGCCTCCACTCCCTTAATTAT 59.214 43.478 0.00 0.00 42.54 1.28
4417 5084 4.137543 GTGCCTCCACTCCCTTAATTATG 58.862 47.826 0.00 0.00 38.93 1.90
4418 5085 4.044308 TGCCTCCACTCCCTTAATTATGA 58.956 43.478 0.04 0.00 0.00 2.15
4419 5086 4.665009 TGCCTCCACTCCCTTAATTATGAT 59.335 41.667 0.04 0.00 0.00 2.45
4420 5087 5.221925 TGCCTCCACTCCCTTAATTATGATC 60.222 44.000 0.04 0.00 0.00 2.92
4421 5088 5.804771 GCCTCCACTCCCTTAATTATGATCC 60.805 48.000 0.04 0.00 0.00 3.36
4422 5089 5.310594 CCTCCACTCCCTTAATTATGATCCA 59.689 44.000 0.04 0.00 0.00 3.41
4423 5090 6.187727 TCCACTCCCTTAATTATGATCCAC 57.812 41.667 0.04 0.00 0.00 4.02
4424 5091 5.911178 TCCACTCCCTTAATTATGATCCACT 59.089 40.000 0.04 0.00 0.00 4.00
4425 5092 6.043243 TCCACTCCCTTAATTATGATCCACTC 59.957 42.308 0.04 0.00 0.00 3.51
4426 5093 6.183361 CCACTCCCTTAATTATGATCCACTCA 60.183 42.308 0.04 0.00 38.53 3.41
4427 5094 7.282585 CACTCCCTTAATTATGATCCACTCAA 58.717 38.462 0.04 0.00 37.44 3.02
4428 5095 7.775093 CACTCCCTTAATTATGATCCACTCAAA 59.225 37.037 0.04 0.00 37.44 2.69
4429 5096 7.775561 ACTCCCTTAATTATGATCCACTCAAAC 59.224 37.037 0.04 0.00 37.44 2.93
4430 5097 7.872138 TCCCTTAATTATGATCCACTCAAACT 58.128 34.615 0.04 0.00 37.44 2.66
4431 5098 8.336235 TCCCTTAATTATGATCCACTCAAACTT 58.664 33.333 0.04 0.00 37.44 2.66
4432 5099 8.624776 CCCTTAATTATGATCCACTCAAACTTC 58.375 37.037 0.04 0.00 37.44 3.01
4433 5100 9.401058 CCTTAATTATGATCCACTCAAACTTCT 57.599 33.333 0.04 0.00 37.44 2.85
4477 5144 6.847956 TTTTTGCATTCATCCAGTTTCTTG 57.152 33.333 0.00 0.00 0.00 3.02
4478 5145 5.534207 TTTGCATTCATCCAGTTTCTTGT 57.466 34.783 0.00 0.00 0.00 3.16
4479 5146 6.647334 TTTGCATTCATCCAGTTTCTTGTA 57.353 33.333 0.00 0.00 0.00 2.41
4480 5147 5.885230 TGCATTCATCCAGTTTCTTGTAG 57.115 39.130 0.00 0.00 0.00 2.74
4481 5148 5.316167 TGCATTCATCCAGTTTCTTGTAGT 58.684 37.500 0.00 0.00 0.00 2.73
4482 5149 5.769662 TGCATTCATCCAGTTTCTTGTAGTT 59.230 36.000 0.00 0.00 0.00 2.24
4483 5150 6.265196 TGCATTCATCCAGTTTCTTGTAGTTT 59.735 34.615 0.00 0.00 0.00 2.66
4484 5151 7.147976 GCATTCATCCAGTTTCTTGTAGTTTT 58.852 34.615 0.00 0.00 0.00 2.43
4485 5152 7.327032 GCATTCATCCAGTTTCTTGTAGTTTTC 59.673 37.037 0.00 0.00 0.00 2.29
4486 5153 8.571336 CATTCATCCAGTTTCTTGTAGTTTTCT 58.429 33.333 0.00 0.00 0.00 2.52
4487 5154 8.519799 TTCATCCAGTTTCTTGTAGTTTTCTT 57.480 30.769 0.00 0.00 0.00 2.52
4488 5155 8.154649 TCATCCAGTTTCTTGTAGTTTTCTTC 57.845 34.615 0.00 0.00 0.00 2.87
4489 5156 7.993183 TCATCCAGTTTCTTGTAGTTTTCTTCT 59.007 33.333 0.00 0.00 0.00 2.85
4490 5157 9.273016 CATCCAGTTTCTTGTAGTTTTCTTCTA 57.727 33.333 0.00 0.00 0.00 2.10
4491 5158 8.658499 TCCAGTTTCTTGTAGTTTTCTTCTAC 57.342 34.615 0.00 0.00 38.45 2.59
4492 5159 8.483758 TCCAGTTTCTTGTAGTTTTCTTCTACT 58.516 33.333 0.00 0.00 38.67 2.57
4493 5160 9.760077 CCAGTTTCTTGTAGTTTTCTTCTACTA 57.240 33.333 0.00 0.00 38.67 1.82
4516 5183 9.632638 ACTATATAATTCAAGAACACATGCCTT 57.367 29.630 0.00 0.00 0.00 4.35
4521 5188 9.807649 ATAATTCAAGAACACATGCCTTTAATC 57.192 29.630 0.00 0.00 0.00 1.75
4522 5189 5.643379 TCAAGAACACATGCCTTTAATCC 57.357 39.130 0.00 0.00 0.00 3.01
4523 5190 5.324409 TCAAGAACACATGCCTTTAATCCT 58.676 37.500 0.00 0.00 0.00 3.24
4524 5191 6.480763 TCAAGAACACATGCCTTTAATCCTA 58.519 36.000 0.00 0.00 0.00 2.94
4525 5192 7.118723 TCAAGAACACATGCCTTTAATCCTAT 58.881 34.615 0.00 0.00 0.00 2.57
4526 5193 6.949352 AGAACACATGCCTTTAATCCTATG 57.051 37.500 0.00 0.00 0.00 2.23
4527 5194 6.662755 AGAACACATGCCTTTAATCCTATGA 58.337 36.000 0.00 0.00 0.00 2.15
4528 5195 7.293073 AGAACACATGCCTTTAATCCTATGAT 58.707 34.615 0.00 0.00 0.00 2.45
4529 5196 7.781693 AGAACACATGCCTTTAATCCTATGATT 59.218 33.333 0.00 0.00 43.56 2.57
4530 5197 7.902920 ACACATGCCTTTAATCCTATGATTT 57.097 32.000 0.00 0.00 41.44 2.17
4531 5198 8.310122 ACACATGCCTTTAATCCTATGATTTT 57.690 30.769 0.00 0.00 41.44 1.82
4532 5199 8.761689 ACACATGCCTTTAATCCTATGATTTTT 58.238 29.630 0.00 0.00 41.44 1.94
4533 5200 9.252962 CACATGCCTTTAATCCTATGATTTTTC 57.747 33.333 0.00 0.00 41.44 2.29
4534 5201 9.205513 ACATGCCTTTAATCCTATGATTTTTCT 57.794 29.630 0.00 0.00 41.44 2.52
4573 5240 8.635765 TGATAATTATGTGGATTAAAGAGGCC 57.364 34.615 1.78 0.00 0.00 5.19
4574 5241 7.669722 TGATAATTATGTGGATTAAAGAGGCCC 59.330 37.037 1.78 0.00 0.00 5.80
4575 5242 2.348411 ATGTGGATTAAAGAGGCCCG 57.652 50.000 0.00 0.00 0.00 6.13
4576 5243 1.281419 TGTGGATTAAAGAGGCCCGA 58.719 50.000 0.00 0.00 0.00 5.14
4577 5244 1.209504 TGTGGATTAAAGAGGCCCGAG 59.790 52.381 0.00 0.00 0.00 4.63
4578 5245 1.209747 GTGGATTAAAGAGGCCCGAGT 59.790 52.381 0.00 0.00 0.00 4.18
4579 5246 1.485066 TGGATTAAAGAGGCCCGAGTC 59.515 52.381 0.00 0.00 0.00 3.36
4580 5247 1.485066 GGATTAAAGAGGCCCGAGTCA 59.515 52.381 0.00 0.00 0.00 3.41
4581 5248 2.552031 GATTAAAGAGGCCCGAGTCAC 58.448 52.381 0.00 0.00 0.00 3.67
4582 5249 1.640917 TTAAAGAGGCCCGAGTCACT 58.359 50.000 0.00 0.00 0.00 3.41
4583 5250 1.640917 TAAAGAGGCCCGAGTCACTT 58.359 50.000 0.00 0.00 0.00 3.16
4584 5251 0.321996 AAAGAGGCCCGAGTCACTTC 59.678 55.000 0.00 0.00 0.00 3.01
4585 5252 0.543174 AAGAGGCCCGAGTCACTTCT 60.543 55.000 0.00 0.00 0.00 2.85
4586 5253 1.216710 GAGGCCCGAGTCACTTCTG 59.783 63.158 0.00 0.00 0.00 3.02
4587 5254 2.232298 GAGGCCCGAGTCACTTCTGG 62.232 65.000 0.00 0.00 0.00 3.86
4588 5255 2.584391 GGCCCGAGTCACTTCTGGT 61.584 63.158 0.00 0.00 0.00 4.00
4589 5256 1.079750 GCCCGAGTCACTTCTGGTC 60.080 63.158 0.00 0.00 0.00 4.02
4590 5257 1.213013 CCCGAGTCACTTCTGGTCG 59.787 63.158 0.00 0.00 0.00 4.79
4591 5258 1.524863 CCCGAGTCACTTCTGGTCGT 61.525 60.000 0.00 0.00 0.00 4.34
4592 5259 0.387367 CCGAGTCACTTCTGGTCGTG 60.387 60.000 0.00 0.00 0.00 4.35
4593 5260 1.004277 CGAGTCACTTCTGGTCGTGC 61.004 60.000 0.00 0.00 0.00 5.34
4594 5261 0.667792 GAGTCACTTCTGGTCGTGCC 60.668 60.000 0.00 0.00 37.90 5.01
4595 5262 1.115930 AGTCACTTCTGGTCGTGCCT 61.116 55.000 1.06 0.00 38.35 4.75
4596 5263 0.249911 GTCACTTCTGGTCGTGCCTT 60.250 55.000 1.06 0.00 38.35 4.35
4597 5264 1.000506 GTCACTTCTGGTCGTGCCTTA 59.999 52.381 1.06 0.00 38.35 2.69
4598 5265 1.899814 TCACTTCTGGTCGTGCCTTAT 59.100 47.619 1.06 0.00 38.35 1.73
4599 5266 2.002586 CACTTCTGGTCGTGCCTTATG 58.997 52.381 1.06 0.00 38.35 1.90
4600 5267 1.623811 ACTTCTGGTCGTGCCTTATGT 59.376 47.619 1.06 0.00 38.35 2.29
4601 5268 2.829720 ACTTCTGGTCGTGCCTTATGTA 59.170 45.455 1.06 0.00 38.35 2.29
4602 5269 3.119101 ACTTCTGGTCGTGCCTTATGTAG 60.119 47.826 1.06 0.00 38.35 2.74
4603 5270 1.136305 TCTGGTCGTGCCTTATGTAGC 59.864 52.381 1.06 0.00 38.35 3.58
4604 5271 0.177141 TGGTCGTGCCTTATGTAGCC 59.823 55.000 1.06 0.00 38.35 3.93
4605 5272 0.177141 GGTCGTGCCTTATGTAGCCA 59.823 55.000 0.00 0.00 0.00 4.75
4606 5273 1.287425 GTCGTGCCTTATGTAGCCAC 58.713 55.000 0.00 0.00 0.00 5.01
4607 5274 0.177141 TCGTGCCTTATGTAGCCACC 59.823 55.000 0.00 0.00 0.00 4.61
4608 5275 0.178068 CGTGCCTTATGTAGCCACCT 59.822 55.000 0.00 0.00 0.00 4.00
4609 5276 1.806623 CGTGCCTTATGTAGCCACCTC 60.807 57.143 0.00 0.00 0.00 3.85
4610 5277 1.209504 GTGCCTTATGTAGCCACCTCA 59.790 52.381 0.00 0.00 0.00 3.86
4611 5278 2.126882 TGCCTTATGTAGCCACCTCAT 58.873 47.619 0.00 0.00 0.00 2.90
4612 5279 2.104792 TGCCTTATGTAGCCACCTCATC 59.895 50.000 0.00 0.00 0.00 2.92
4613 5280 2.551071 GCCTTATGTAGCCACCTCATCC 60.551 54.545 0.00 0.00 0.00 3.51
4614 5281 2.039084 CCTTATGTAGCCACCTCATCCC 59.961 54.545 0.00 0.00 0.00 3.85
4615 5282 1.729586 TATGTAGCCACCTCATCCCC 58.270 55.000 0.00 0.00 0.00 4.81
4616 5283 0.327480 ATGTAGCCACCTCATCCCCA 60.327 55.000 0.00 0.00 0.00 4.96
4617 5284 0.327480 TGTAGCCACCTCATCCCCAT 60.327 55.000 0.00 0.00 0.00 4.00
4618 5285 1.061735 TGTAGCCACCTCATCCCCATA 60.062 52.381 0.00 0.00 0.00 2.74
4619 5286 1.625818 GTAGCCACCTCATCCCCATAG 59.374 57.143 0.00 0.00 0.00 2.23
4620 5287 0.268869 AGCCACCTCATCCCCATAGA 59.731 55.000 0.00 0.00 0.00 1.98
4621 5288 1.140312 GCCACCTCATCCCCATAGAA 58.860 55.000 0.00 0.00 0.00 2.10
4622 5289 1.494721 GCCACCTCATCCCCATAGAAA 59.505 52.381 0.00 0.00 0.00 2.52
4623 5290 2.108952 GCCACCTCATCCCCATAGAAAT 59.891 50.000 0.00 0.00 0.00 2.17
4624 5291 3.437052 GCCACCTCATCCCCATAGAAATT 60.437 47.826 0.00 0.00 0.00 1.82
4625 5292 4.202567 GCCACCTCATCCCCATAGAAATTA 60.203 45.833 0.00 0.00 0.00 1.40
4626 5293 5.564550 CCACCTCATCCCCATAGAAATTAG 58.435 45.833 0.00 0.00 0.00 1.73
4627 5294 5.515534 CCACCTCATCCCCATAGAAATTAGG 60.516 48.000 0.00 0.00 0.00 2.69
4628 5295 4.603610 ACCTCATCCCCATAGAAATTAGGG 59.396 45.833 0.00 0.00 41.12 3.53
4629 5296 4.603610 CCTCATCCCCATAGAAATTAGGGT 59.396 45.833 0.00 0.00 39.76 4.34
4630 5297 5.075067 CCTCATCCCCATAGAAATTAGGGTT 59.925 44.000 0.00 0.00 39.76 4.11
4631 5298 6.200878 TCATCCCCATAGAAATTAGGGTTC 57.799 41.667 0.00 0.00 39.76 3.62
4632 5299 5.074515 TCATCCCCATAGAAATTAGGGTTCC 59.925 44.000 0.00 0.00 39.76 3.62
4633 5300 4.652628 TCCCCATAGAAATTAGGGTTCCT 58.347 43.478 0.00 0.00 39.76 3.36
4634 5301 5.050685 TCCCCATAGAAATTAGGGTTCCTT 58.949 41.667 0.00 0.00 39.76 3.36
4635 5302 5.498373 TCCCCATAGAAATTAGGGTTCCTTT 59.502 40.000 0.00 0.00 39.76 3.11
4636 5303 6.683791 TCCCCATAGAAATTAGGGTTCCTTTA 59.316 38.462 0.00 0.00 39.76 1.85
4637 5304 7.004691 CCCCATAGAAATTAGGGTTCCTTTAG 58.995 42.308 0.00 0.00 39.76 1.85
4638 5305 6.490381 CCCATAGAAATTAGGGTTCCTTTAGC 59.510 42.308 0.00 0.00 36.52 3.09
4639 5306 7.290813 CCATAGAAATTAGGGTTCCTTTAGCT 58.709 38.462 0.00 0.00 34.61 3.32
4640 5307 7.780271 CCATAGAAATTAGGGTTCCTTTAGCTT 59.220 37.037 0.00 0.00 34.61 3.74
4641 5308 8.841300 CATAGAAATTAGGGTTCCTTTAGCTTC 58.159 37.037 0.00 0.00 34.61 3.86
4642 5309 6.188407 AGAAATTAGGGTTCCTTTAGCTTCC 58.812 40.000 0.00 0.00 34.61 3.46
4643 5310 5.798239 AATTAGGGTTCCTTTAGCTTCCT 57.202 39.130 0.00 0.00 34.61 3.36
4644 5311 4.838904 TTAGGGTTCCTTTAGCTTCCTC 57.161 45.455 0.00 0.00 34.61 3.71
4645 5312 2.922564 AGGGTTCCTTTAGCTTCCTCT 58.077 47.619 0.00 0.00 0.00 3.69
4646 5313 2.573915 AGGGTTCCTTTAGCTTCCTCTG 59.426 50.000 0.00 0.00 0.00 3.35
4647 5314 2.356227 GGGTTCCTTTAGCTTCCTCTGG 60.356 54.545 0.00 0.00 0.00 3.86
4648 5315 2.360844 GTTCCTTTAGCTTCCTCTGGC 58.639 52.381 0.00 0.00 0.00 4.85
4649 5316 0.537188 TCCTTTAGCTTCCTCTGGCG 59.463 55.000 0.00 0.00 0.00 5.69
4650 5317 1.092345 CCTTTAGCTTCCTCTGGCGC 61.092 60.000 0.00 0.00 0.00 6.53
4651 5318 1.078426 TTTAGCTTCCTCTGGCGCC 60.078 57.895 22.73 22.73 0.00 6.53
4652 5319 2.852495 TTTAGCTTCCTCTGGCGCCG 62.852 60.000 23.90 16.91 0.00 6.46
4672 5339 4.593864 GCCGGTCCGCCTCATCTC 62.594 72.222 5.50 0.00 0.00 2.75
4673 5340 3.917760 CCGGTCCGCCTCATCTCC 61.918 72.222 5.50 0.00 0.00 3.71
4674 5341 4.271816 CGGTCCGCCTCATCTCCG 62.272 72.222 0.00 0.00 0.00 4.63
4675 5342 2.833582 GGTCCGCCTCATCTCCGA 60.834 66.667 0.00 0.00 0.00 4.55
4676 5343 2.203771 GGTCCGCCTCATCTCCGAT 61.204 63.158 0.00 0.00 0.00 4.18
4677 5344 1.006805 GTCCGCCTCATCTCCGATG 60.007 63.158 0.00 0.00 0.00 3.84
4678 5345 2.203082 TCCGCCTCATCTCCGATGG 61.203 63.158 4.21 0.00 0.00 3.51
4679 5346 2.356793 CGCCTCATCTCCGATGGC 60.357 66.667 4.21 0.00 40.14 4.40
4680 5347 2.824546 GCCTCATCTCCGATGGCA 59.175 61.111 4.21 0.00 42.79 4.92
4681 5348 1.374190 GCCTCATCTCCGATGGCAT 59.626 57.895 0.00 0.00 42.79 4.40
4682 5349 0.250640 GCCTCATCTCCGATGGCATT 60.251 55.000 0.00 0.00 42.79 3.56
4683 5350 1.002430 GCCTCATCTCCGATGGCATTA 59.998 52.381 0.00 0.00 42.79 1.90
4684 5351 2.934364 GCCTCATCTCCGATGGCATTAG 60.934 54.545 0.00 0.07 42.79 1.73
4685 5352 2.354503 CCTCATCTCCGATGGCATTAGG 60.355 54.545 14.46 14.46 0.00 2.69
4686 5353 1.625315 TCATCTCCGATGGCATTAGGG 59.375 52.381 18.66 13.01 0.00 3.53
4687 5354 0.326264 ATCTCCGATGGCATTAGGGC 59.674 55.000 18.66 0.00 43.73 5.19
4705 5372 3.585990 CATGGGGCGCGGTGAATC 61.586 66.667 8.83 0.00 0.00 2.52
4706 5373 4.875713 ATGGGGCGCGGTGAATCC 62.876 66.667 8.83 0.00 0.00 3.01
4709 5376 4.467084 GGGCGCGGTGAATCCTGA 62.467 66.667 8.83 0.00 0.00 3.86
4710 5377 3.195698 GGCGCGGTGAATCCTGAC 61.196 66.667 8.83 0.00 0.00 3.51
4711 5378 3.195698 GCGCGGTGAATCCTGACC 61.196 66.667 8.83 0.00 0.00 4.02
4712 5379 2.511600 CGCGGTGAATCCTGACCC 60.512 66.667 0.00 0.00 0.00 4.46
4713 5380 2.990479 GCGGTGAATCCTGACCCT 59.010 61.111 0.00 0.00 0.00 4.34
4714 5381 1.299976 GCGGTGAATCCTGACCCTT 59.700 57.895 0.00 0.00 0.00 3.95
4715 5382 0.539986 GCGGTGAATCCTGACCCTTA 59.460 55.000 0.00 0.00 0.00 2.69
4716 5383 1.742750 GCGGTGAATCCTGACCCTTAC 60.743 57.143 0.00 0.00 0.00 2.34
4717 5384 1.134491 CGGTGAATCCTGACCCTTACC 60.134 57.143 0.00 0.00 0.00 2.85
4718 5385 1.134491 GGTGAATCCTGACCCTTACCG 60.134 57.143 0.00 0.00 0.00 4.02
4719 5386 1.134491 GTGAATCCTGACCCTTACCGG 60.134 57.143 0.00 0.00 0.00 5.28
4720 5387 1.201424 GAATCCTGACCCTTACCGGT 58.799 55.000 13.98 13.98 39.49 5.28
4721 5388 0.909623 AATCCTGACCCTTACCGGTG 59.090 55.000 19.93 1.91 35.79 4.94
4722 5389 0.981277 ATCCTGACCCTTACCGGTGG 60.981 60.000 19.93 13.21 35.79 4.61
4724 5391 1.611261 CTGACCCTTACCGGTGGGA 60.611 63.158 31.56 13.03 46.15 4.37
4725 5392 1.611261 TGACCCTTACCGGTGGGAG 60.611 63.158 31.56 19.29 46.15 4.30
4726 5393 2.285144 ACCCTTACCGGTGGGAGG 60.285 66.667 31.56 25.66 46.15 4.30
4727 5394 3.087906 CCCTTACCGGTGGGAGGG 61.088 72.222 27.77 27.77 46.15 4.30
4728 5395 3.793888 CCTTACCGGTGGGAGGGC 61.794 72.222 19.93 0.00 36.97 5.19
4729 5396 2.687566 CTTACCGGTGGGAGGGCT 60.688 66.667 19.93 0.00 36.97 5.19
4730 5397 2.204029 TTACCGGTGGGAGGGCTT 60.204 61.111 19.93 0.00 36.97 4.35
4731 5398 2.253403 CTTACCGGTGGGAGGGCTTC 62.253 65.000 19.93 0.00 36.97 3.86
4734 5401 3.072468 CGGTGGGAGGGCTTCGTA 61.072 66.667 0.00 0.00 0.00 3.43
4735 5402 2.652095 CGGTGGGAGGGCTTCGTAA 61.652 63.158 0.00 0.00 0.00 3.18
4736 5403 1.221021 GGTGGGAGGGCTTCGTAAG 59.779 63.158 0.00 0.00 0.00 2.34
4749 5416 2.888513 TCGTAAGACGTTCCTTCGAG 57.111 50.000 0.00 0.00 45.01 4.04
4750 5417 2.146342 TCGTAAGACGTTCCTTCGAGT 58.854 47.619 0.00 0.00 45.01 4.18
4751 5418 2.549754 TCGTAAGACGTTCCTTCGAGTT 59.450 45.455 0.00 0.00 45.01 3.01
4752 5419 3.003689 TCGTAAGACGTTCCTTCGAGTTT 59.996 43.478 0.00 0.00 45.01 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 1.137086 GAATCGAGTTCCTGCAGGCTA 59.863 52.381 28.91 15.47 34.44 3.93
85 86 3.179869 CTGCCTGCGCAACGACAAA 62.180 57.895 13.05 0.00 46.66 2.83
95 96 3.944250 AATTCCCCACCTGCCTGCG 62.944 63.158 0.00 0.00 0.00 5.18
133 137 5.126222 CCCTCTTCTATTTTCCCTTCAAAGC 59.874 44.000 0.00 0.00 0.00 3.51
214 219 3.356529 TCCATGGCCTCTTTCTTCTTC 57.643 47.619 6.96 0.00 0.00 2.87
215 220 3.814504 TTCCATGGCCTCTTTCTTCTT 57.185 42.857 6.96 0.00 0.00 2.52
216 221 5.456921 TTATTCCATGGCCTCTTTCTTCT 57.543 39.130 6.96 0.00 0.00 2.85
228 233 8.153479 TCTCGACACAATAATTTATTCCATGG 57.847 34.615 4.97 4.97 0.00 3.66
308 313 5.183331 AGTTGTGACGATGAAAGCTAGTAGA 59.817 40.000 0.00 0.00 0.00 2.59
350 355 0.737715 CGGTGGAGTAGTTGAGCTGC 60.738 60.000 0.00 0.00 0.00 5.25
411 416 4.821260 TGCTTCTTACTTGAGACAAATGCA 59.179 37.500 0.00 0.00 0.00 3.96
455 780 2.457598 CTCTATTAGCCGGCCCATCTA 58.542 52.381 26.15 5.33 0.00 1.98
490 815 4.890581 AGACACTAGGTACATAGCTGGAAG 59.109 45.833 14.27 1.31 36.07 3.46
494 819 5.125578 TGACAAGACACTAGGTACATAGCTG 59.874 44.000 14.27 13.20 35.39 4.24
513 838 6.883756 TCAGCATTCATATGGTTAGTTGACAA 59.116 34.615 2.13 0.00 40.37 3.18
666 1014 4.793028 GCTGAGCAGGTACCTTTGTTTTTC 60.793 45.833 13.15 3.18 0.00 2.29
946 1294 1.775385 TAGATGATGACGGCCTGTGA 58.225 50.000 0.00 0.00 0.00 3.58
970 1318 1.745264 GCCCTTCTCCTGATCCTCG 59.255 63.158 0.00 0.00 0.00 4.63
1047 1395 1.271127 GGAGGGAAGAAGAGGCAGCT 61.271 60.000 0.00 0.00 0.00 4.24
1103 1451 7.913674 ACAAGCAAACATTTAAGTGGAAAAA 57.086 28.000 2.81 0.00 0.00 1.94
1232 1580 6.406692 TCATCTATTTTAGAACGGAGGGAG 57.593 41.667 0.00 0.00 38.50 4.30
1233 1581 5.221461 GCTCATCTATTTTAGAACGGAGGGA 60.221 44.000 10.55 0.00 38.50 4.20
1234 1582 4.991687 GCTCATCTATTTTAGAACGGAGGG 59.008 45.833 10.55 0.00 38.50 4.30
1235 1583 4.991687 GGCTCATCTATTTTAGAACGGAGG 59.008 45.833 10.55 0.00 38.50 4.30
1236 1584 5.601662 TGGCTCATCTATTTTAGAACGGAG 58.398 41.667 0.00 0.00 38.50 4.63
1237 1585 5.607939 TGGCTCATCTATTTTAGAACGGA 57.392 39.130 0.00 0.00 38.50 4.69
1238 1586 5.817816 AGTTGGCTCATCTATTTTAGAACGG 59.182 40.000 0.00 0.00 38.50 4.44
1239 1587 6.910536 AGTTGGCTCATCTATTTTAGAACG 57.089 37.500 0.00 0.00 38.50 3.95
1240 1588 8.515414 ACAAAGTTGGCTCATCTATTTTAGAAC 58.485 33.333 0.00 0.00 38.50 3.01
1241 1589 8.635765 ACAAAGTTGGCTCATCTATTTTAGAA 57.364 30.769 0.00 0.00 38.50 2.10
1242 1590 9.162764 GTACAAAGTTGGCTCATCTATTTTAGA 57.837 33.333 0.00 0.00 39.50 2.10
1243 1591 9.167311 AGTACAAAGTTGGCTCATCTATTTTAG 57.833 33.333 0.00 0.00 0.00 1.85
1245 1593 9.515226 TTAGTACAAAGTTGGCTCATCTATTTT 57.485 29.630 0.00 0.00 0.00 1.82
1246 1594 8.947115 GTTAGTACAAAGTTGGCTCATCTATTT 58.053 33.333 0.00 0.00 0.00 1.40
1247 1595 8.322091 AGTTAGTACAAAGTTGGCTCATCTATT 58.678 33.333 0.00 0.00 0.00 1.73
1248 1596 7.852263 AGTTAGTACAAAGTTGGCTCATCTAT 58.148 34.615 0.00 0.00 0.00 1.98
1249 1597 7.241042 AGTTAGTACAAAGTTGGCTCATCTA 57.759 36.000 0.00 0.00 0.00 1.98
1250 1598 6.115448 AGTTAGTACAAAGTTGGCTCATCT 57.885 37.500 0.00 0.00 0.00 2.90
1251 1599 6.803154 AAGTTAGTACAAAGTTGGCTCATC 57.197 37.500 0.00 0.00 0.00 2.92
1252 1600 6.016276 CCAAAGTTAGTACAAAGTTGGCTCAT 60.016 38.462 0.00 0.00 0.00 2.90
1253 1601 5.298276 CCAAAGTTAGTACAAAGTTGGCTCA 59.702 40.000 0.00 0.00 0.00 4.26
1254 1602 5.298527 ACCAAAGTTAGTACAAAGTTGGCTC 59.701 40.000 12.57 0.00 0.00 4.70
1255 1603 5.198207 ACCAAAGTTAGTACAAAGTTGGCT 58.802 37.500 12.57 0.00 0.00 4.75
1256 1604 5.509716 ACCAAAGTTAGTACAAAGTTGGC 57.490 39.130 12.57 0.00 0.00 4.52
1257 1605 7.556733 TGTACCAAAGTTAGTACAAAGTTGG 57.443 36.000 13.64 11.57 44.32 3.77
1264 1612 6.543100 CCCAACTTTGTACCAAAGTTAGTACA 59.457 38.462 25.95 10.50 45.57 2.90
1265 1613 6.543465 ACCCAACTTTGTACCAAAGTTAGTAC 59.457 38.462 25.95 8.15 45.57 2.73
1266 1614 6.661777 ACCCAACTTTGTACCAAAGTTAGTA 58.338 36.000 25.95 0.00 45.57 1.82
1267 1615 5.512298 ACCCAACTTTGTACCAAAGTTAGT 58.488 37.500 25.95 22.92 45.57 2.24
1268 1616 5.591067 TGACCCAACTTTGTACCAAAGTTAG 59.409 40.000 25.95 22.46 45.57 2.34
1269 1617 5.507637 TGACCCAACTTTGTACCAAAGTTA 58.492 37.500 25.95 13.46 45.57 2.24
1271 1619 3.970842 TGACCCAACTTTGTACCAAAGT 58.029 40.909 14.80 14.80 41.82 2.66
1272 1620 4.827284 AGATGACCCAACTTTGTACCAAAG 59.173 41.667 13.62 13.62 0.00 2.77
1273 1621 4.798882 AGATGACCCAACTTTGTACCAAA 58.201 39.130 0.00 0.00 0.00 3.28
1274 1622 4.447138 AGATGACCCAACTTTGTACCAA 57.553 40.909 0.00 0.00 0.00 3.67
1275 1623 5.772393 ATAGATGACCCAACTTTGTACCA 57.228 39.130 0.00 0.00 0.00 3.25
1276 1624 7.312899 CAAAATAGATGACCCAACTTTGTACC 58.687 38.462 0.00 0.00 0.00 3.34
1277 1625 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
1278 1626 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
1279 1627 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
1280 1628 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
1281 1629 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
1282 1630 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
1283 1631 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
1284 1632 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
1285 1633 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
1286 1634 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
1287 1635 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
1288 1636 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
1289 1637 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
1290 1638 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
1291 1639 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
1292 1640 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
1293 1641 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
1294 1642 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
1295 1643 5.703730 ATTACTCCCTCCGTTCCAAAATA 57.296 39.130 0.00 0.00 0.00 1.40
1296 1644 4.586306 ATTACTCCCTCCGTTCCAAAAT 57.414 40.909 0.00 0.00 0.00 1.82
1297 1645 4.042435 AGAATTACTCCCTCCGTTCCAAAA 59.958 41.667 0.00 0.00 0.00 2.44
1298 1646 3.585732 AGAATTACTCCCTCCGTTCCAAA 59.414 43.478 0.00 0.00 0.00 3.28
1299 1647 3.178865 AGAATTACTCCCTCCGTTCCAA 58.821 45.455 0.00 0.00 0.00 3.53
1300 1648 2.764572 GAGAATTACTCCCTCCGTTCCA 59.235 50.000 0.00 0.00 39.53 3.53
1301 1649 3.032459 AGAGAATTACTCCCTCCGTTCC 58.968 50.000 0.00 0.00 45.96 3.62
1302 1650 4.159879 TGAAGAGAATTACTCCCTCCGTTC 59.840 45.833 0.00 0.00 45.96 3.95
1303 1651 4.094476 TGAAGAGAATTACTCCCTCCGTT 58.906 43.478 0.00 0.00 45.96 4.44
1304 1652 3.709587 TGAAGAGAATTACTCCCTCCGT 58.290 45.455 0.00 0.00 45.96 4.69
1305 1653 4.402793 TCTTGAAGAGAATTACTCCCTCCG 59.597 45.833 0.00 0.00 45.96 4.63
1306 1654 5.941555 TCTTGAAGAGAATTACTCCCTCC 57.058 43.478 0.00 0.00 45.96 4.30
1307 1655 8.672815 CATTTTCTTGAAGAGAATTACTCCCTC 58.327 37.037 8.09 0.00 45.96 4.30
1308 1656 8.166726 ACATTTTCTTGAAGAGAATTACTCCCT 58.833 33.333 8.09 0.00 45.96 4.20
1309 1657 8.239998 CACATTTTCTTGAAGAGAATTACTCCC 58.760 37.037 8.09 0.00 45.96 4.30
1310 1658 8.239998 CCACATTTTCTTGAAGAGAATTACTCC 58.760 37.037 8.09 0.00 45.96 3.85
1311 1659 8.787852 ACCACATTTTCTTGAAGAGAATTACTC 58.212 33.333 8.09 0.00 43.65 2.59
1312 1660 8.697507 ACCACATTTTCTTGAAGAGAATTACT 57.302 30.769 8.09 0.00 43.65 2.24
1313 1661 8.787852 AGACCACATTTTCTTGAAGAGAATTAC 58.212 33.333 8.09 0.61 43.65 1.89
1314 1662 8.924511 AGACCACATTTTCTTGAAGAGAATTA 57.075 30.769 8.09 0.00 43.65 1.40
1315 1663 7.830099 AGACCACATTTTCTTGAAGAGAATT 57.170 32.000 8.09 0.00 43.65 2.17
1316 1664 7.830099 AAGACCACATTTTCTTGAAGAGAAT 57.170 32.000 5.24 5.24 43.65 2.40
1328 1676 6.276847 TGTTGCGAATTAAAGACCACATTTT 58.723 32.000 0.00 0.00 0.00 1.82
1370 1718 9.291664 CGAGGTTTTTCTTTGTTTACACATTAA 57.708 29.630 0.00 0.00 31.06 1.40
1371 1719 8.675504 TCGAGGTTTTTCTTTGTTTACACATTA 58.324 29.630 0.00 0.00 31.06 1.90
1372 1720 7.540299 TCGAGGTTTTTCTTTGTTTACACATT 58.460 30.769 0.00 0.00 31.06 2.71
1373 1721 7.090953 TCGAGGTTTTTCTTTGTTTACACAT 57.909 32.000 0.00 0.00 31.06 3.21
1374 1722 6.497785 TCGAGGTTTTTCTTTGTTTACACA 57.502 33.333 0.00 0.00 0.00 3.72
1598 2145 3.492137 GGACGATACAGTTGACCATACCC 60.492 52.174 0.00 0.00 0.00 3.69
1630 2177 5.243426 TGTCCTCAAAACAGTTAAGCAAC 57.757 39.130 0.00 0.00 34.67 4.17
1636 2183 6.037062 CGCATCATATGTCCTCAAAACAGTTA 59.963 38.462 1.90 0.00 0.00 2.24
1666 2213 5.986501 AAACAAGAAACAGGGTACAACAA 57.013 34.783 0.00 0.00 0.00 2.83
2007 2554 8.633561 TGATTTGTGTGAATTGGTTATGTTGTA 58.366 29.630 0.00 0.00 0.00 2.41
2008 2555 7.495901 TGATTTGTGTGAATTGGTTATGTTGT 58.504 30.769 0.00 0.00 0.00 3.32
2009 2556 7.943413 TGATTTGTGTGAATTGGTTATGTTG 57.057 32.000 0.00 0.00 0.00 3.33
2010 2557 8.991026 CATTGATTTGTGTGAATTGGTTATGTT 58.009 29.630 0.00 0.00 0.00 2.71
2011 2558 8.366401 TCATTGATTTGTGTGAATTGGTTATGT 58.634 29.630 0.00 0.00 0.00 2.29
2012 2559 8.760103 TCATTGATTTGTGTGAATTGGTTATG 57.240 30.769 0.00 0.00 0.00 1.90
2013 2560 9.426837 CTTCATTGATTTGTGTGAATTGGTTAT 57.573 29.630 0.00 0.00 30.97 1.89
2014 2561 8.420222 ACTTCATTGATTTGTGTGAATTGGTTA 58.580 29.630 0.00 0.00 30.97 2.85
2015 2562 7.274447 ACTTCATTGATTTGTGTGAATTGGTT 58.726 30.769 0.00 0.00 30.97 3.67
2016 2563 6.819284 ACTTCATTGATTTGTGTGAATTGGT 58.181 32.000 0.00 0.00 30.97 3.67
2017 2564 8.865978 CATACTTCATTGATTTGTGTGAATTGG 58.134 33.333 0.00 0.00 30.97 3.16
2018 2565 9.414295 ACATACTTCATTGATTTGTGTGAATTG 57.586 29.630 13.97 0.00 30.97 2.32
2019 2566 9.985730 AACATACTTCATTGATTTGTGTGAATT 57.014 25.926 13.97 0.00 30.97 2.17
2020 2567 9.985730 AAACATACTTCATTGATTTGTGTGAAT 57.014 25.926 13.97 4.98 30.97 2.57
2021 2568 9.814899 AAAACATACTTCATTGATTTGTGTGAA 57.185 25.926 13.97 0.00 0.00 3.18
2022 2569 9.462174 GAAAACATACTTCATTGATTTGTGTGA 57.538 29.630 13.97 0.00 0.00 3.58
2023 2570 9.247126 TGAAAACATACTTCATTGATTTGTGTG 57.753 29.630 8.82 8.82 0.00 3.82
2024 2571 9.985730 ATGAAAACATACTTCATTGATTTGTGT 57.014 25.926 0.00 0.00 39.89 3.72
2026 2573 8.928733 GCATGAAAACATACTTCATTGATTTGT 58.071 29.630 0.00 0.00 40.69 2.83
2027 2574 8.927721 TGCATGAAAACATACTTCATTGATTTG 58.072 29.630 0.00 0.00 40.69 2.32
2028 2575 8.928733 GTGCATGAAAACATACTTCATTGATTT 58.071 29.630 0.00 0.00 40.69 2.17
2029 2576 8.089597 TGTGCATGAAAACATACTTCATTGATT 58.910 29.630 0.00 0.00 40.69 2.57
2030 2577 7.543172 GTGTGCATGAAAACATACTTCATTGAT 59.457 33.333 0.00 0.00 40.69 2.57
2031 2578 6.862608 GTGTGCATGAAAACATACTTCATTGA 59.137 34.615 0.00 0.00 40.69 2.57
2032 2579 6.641723 TGTGTGCATGAAAACATACTTCATTG 59.358 34.615 0.00 0.00 40.69 2.82
2033 2580 6.747125 TGTGTGCATGAAAACATACTTCATT 58.253 32.000 0.00 0.00 40.69 2.57
2034 2581 6.330004 TGTGTGCATGAAAACATACTTCAT 57.670 33.333 0.00 0.00 42.85 2.57
2035 2582 5.764487 TGTGTGCATGAAAACATACTTCA 57.236 34.783 0.00 0.00 37.22 3.02
2036 2583 6.917477 TCTTTGTGTGCATGAAAACATACTTC 59.083 34.615 0.00 0.00 0.00 3.01
2037 2584 6.804677 TCTTTGTGTGCATGAAAACATACTT 58.195 32.000 0.00 0.00 0.00 2.24
2038 2585 6.389830 TCTTTGTGTGCATGAAAACATACT 57.610 33.333 0.00 0.00 0.00 2.12
2039 2586 6.862608 TGATCTTTGTGTGCATGAAAACATAC 59.137 34.615 0.00 0.00 0.00 2.39
2040 2587 6.979465 TGATCTTTGTGTGCATGAAAACATA 58.021 32.000 0.00 0.00 0.00 2.29
2041 2588 5.845103 TGATCTTTGTGTGCATGAAAACAT 58.155 33.333 0.00 0.00 0.00 2.71
2042 2589 5.259832 TGATCTTTGTGTGCATGAAAACA 57.740 34.783 0.00 0.00 0.00 2.83
2260 2807 6.726230 TCGAATTCTCTCCGATAAACTACAG 58.274 40.000 3.52 0.00 0.00 2.74
2262 2809 7.482428 GCTATCGAATTCTCTCCGATAAACTAC 59.518 40.741 3.52 0.00 42.39 2.73
2294 2841 4.642429 CTGGTATAAGCCCCTGAACATAC 58.358 47.826 0.00 0.00 0.00 2.39
2309 2856 8.958119 ATTTATCTTTTTGTCTCGCTGGTATA 57.042 30.769 0.00 0.00 0.00 1.47
2392 2939 9.765795 AGTATTAACATATAAGCCACTGAGAAC 57.234 33.333 0.00 0.00 0.00 3.01
2503 3050 6.817765 TTCTTTGCCTTTGTATAGTCCTTG 57.182 37.500 0.00 0.00 0.00 3.61
2552 3100 8.617809 GTGTAAGACCTGACAAACAAATAAAGA 58.382 33.333 0.00 0.00 0.00 2.52
2605 3153 4.543590 AGCACAGACTAGCAGTGTTTAT 57.456 40.909 10.35 0.00 36.48 1.40
2702 3250 7.647715 CGTTTCTCATTCAAGTTACAAAACCAT 59.352 33.333 0.00 0.00 36.15 3.55
2703 3251 6.970043 CGTTTCTCATTCAAGTTACAAAACCA 59.030 34.615 0.00 0.00 36.15 3.67
2718 3266 4.580580 ACAAAGAAGAAGCCGTTTCTCATT 59.419 37.500 0.00 0.00 45.41 2.57
2805 3353 3.363341 TGAACCCGCAACTGAAAATTC 57.637 42.857 0.00 0.00 0.00 2.17
2820 3368 9.209175 GTATCTTACATTACCTGATCATGAACC 57.791 37.037 0.00 0.00 0.00 3.62
2846 3394 7.521529 CGTGGGCATATATTGAAATACTTCTG 58.478 38.462 0.00 0.00 32.33 3.02
3017 3565 2.602878 GAATGCCACTGAAATGCACAG 58.397 47.619 1.47 1.47 37.92 3.66
3018 3566 1.273048 GGAATGCCACTGAAATGCACA 59.727 47.619 0.00 0.00 37.92 4.57
3045 3593 2.093869 CCTTTGGCACATGGAAATCCTG 60.094 50.000 0.00 0.00 39.30 3.86
3156 3704 5.499176 GCGCAAAAACTCAAGAAAACAAGAG 60.499 40.000 0.30 0.00 0.00 2.85
3199 3748 1.544246 GAAACCTTCAATGAACGGGGG 59.456 52.381 13.34 6.86 0.00 5.40
3231 3781 3.364441 GCTGGGTGCGCATGTCAA 61.364 61.111 15.91 0.00 0.00 3.18
3273 3837 5.645624 CATTCCTACATCTATGCTCGGTAG 58.354 45.833 0.00 0.00 33.07 3.18
3274 3838 4.082190 GCATTCCTACATCTATGCTCGGTA 60.082 45.833 0.00 0.00 40.08 4.02
3275 3839 3.306364 GCATTCCTACATCTATGCTCGGT 60.306 47.826 0.00 0.00 40.08 4.69
3276 3840 3.257393 GCATTCCTACATCTATGCTCGG 58.743 50.000 0.00 0.00 40.08 4.63
3277 3841 3.917988 TGCATTCCTACATCTATGCTCG 58.082 45.455 0.00 0.00 42.85 5.03
3278 3842 3.683822 GCTGCATTCCTACATCTATGCTC 59.316 47.826 0.00 0.00 42.85 4.26
3279 3843 3.558746 GGCTGCATTCCTACATCTATGCT 60.559 47.826 0.50 0.00 42.85 3.79
3353 3922 3.827008 ATGTCATCAATACTCCTGCGT 57.173 42.857 0.00 0.00 0.00 5.24
3386 3955 2.602878 GTATGTTCGTTCGCCTCTTCA 58.397 47.619 0.00 0.00 0.00 3.02
3470 4039 7.290248 TGGAAAAATAAACCAAACCATACCTCA 59.710 33.333 0.00 0.00 0.00 3.86
3480 4049 6.603201 TGGTGCAAATGGAAAAATAAACCAAA 59.397 30.769 0.00 0.00 37.24 3.28
3496 4065 4.953940 ACATTGGTAAACTGGTGCAAAT 57.046 36.364 0.00 0.00 0.00 2.32
3515 4084 2.613474 GGTATGCACCGGACAGTAAACA 60.613 50.000 9.46 0.00 34.36 2.83
3540 4109 6.639686 GCGATGTATCATGCATCTTGAAAATT 59.360 34.615 13.22 0.00 40.23 1.82
3543 4112 4.818005 AGCGATGTATCATGCATCTTGAAA 59.182 37.500 13.22 0.00 40.23 2.69
3544 4113 4.383173 AGCGATGTATCATGCATCTTGAA 58.617 39.130 13.22 0.00 40.23 2.69
3545 4114 3.992427 GAGCGATGTATCATGCATCTTGA 59.008 43.478 13.22 0.00 40.23 3.02
3546 4115 3.124806 GGAGCGATGTATCATGCATCTTG 59.875 47.826 13.22 0.94 40.23 3.02
3558 4137 1.187974 TTCGGGAAAGGAGCGATGTA 58.812 50.000 0.00 0.00 0.00 2.29
3563 4142 0.811616 CCTGATTCGGGAAAGGAGCG 60.812 60.000 5.52 0.00 29.82 5.03
3728 4310 1.720301 CGCCATCTCTGCTTGAAGC 59.280 57.895 10.84 10.84 42.82 3.86
3795 4377 6.127730 CCAACTTTACTTGAAGTTTGGTCAGT 60.128 38.462 15.15 2.89 45.05 3.41
3809 4391 2.817844 CCCTAAAGCGCCAACTTTACTT 59.182 45.455 2.29 0.00 40.32 2.24
3812 4394 2.863132 TCCCTAAAGCGCCAACTTTA 57.137 45.000 2.29 1.10 40.32 1.85
3856 4438 2.028420 TCAATGACAGCATTCCCTCG 57.972 50.000 0.00 0.00 42.66 4.63
4046 4641 2.040606 ACGTATGAGGGGTGGCCT 59.959 61.111 3.32 0.00 0.00 5.19
4055 4650 2.417516 CCGGGCAGGACGTATGAG 59.582 66.667 0.00 0.00 45.00 2.90
4056 4651 3.845259 GCCGGGCAGGACGTATGA 61.845 66.667 15.62 0.00 45.00 2.15
4057 4652 4.155733 TGCCGGGCAGGACGTATG 62.156 66.667 19.77 0.00 45.00 2.39
4067 4684 2.516225 GGTATGTTCCTGCCGGGC 60.516 66.667 13.32 13.32 34.39 6.13
4068 4685 1.146263 GAGGTATGTTCCTGCCGGG 59.854 63.158 2.18 0.00 38.02 5.73
4070 4687 2.107950 TTTGAGGTATGTTCCTGCCG 57.892 50.000 0.00 0.00 38.02 5.69
4077 4694 6.542821 TGAAGAGTCCAATTTGAGGTATGTT 58.457 36.000 0.00 0.00 0.00 2.71
4094 4711 0.318762 GACTGCCGGACTTGAAGAGT 59.681 55.000 5.05 0.00 42.70 3.24
4095 4712 0.390472 GGACTGCCGGACTTGAAGAG 60.390 60.000 5.05 0.00 0.00 2.85
4098 4715 0.181587 TTTGGACTGCCGGACTTGAA 59.818 50.000 5.05 0.00 36.79 2.69
4099 4716 0.400213 ATTTGGACTGCCGGACTTGA 59.600 50.000 5.05 0.00 36.79 3.02
4100 4717 1.247567 AATTTGGACTGCCGGACTTG 58.752 50.000 5.05 0.00 36.79 3.16
4101 4718 1.995376 AAATTTGGACTGCCGGACTT 58.005 45.000 5.05 0.00 36.79 3.01
4102 4719 2.871096 TAAATTTGGACTGCCGGACT 57.129 45.000 5.05 0.00 36.79 3.85
4103 4720 2.479560 GCATAAATTTGGACTGCCGGAC 60.480 50.000 5.05 0.00 36.79 4.79
4104 4721 1.748493 GCATAAATTTGGACTGCCGGA 59.252 47.619 5.05 0.00 36.79 5.14
4106 4723 2.937469 TGCATAAATTTGGACTGCCG 57.063 45.000 0.00 0.00 36.79 5.69
4107 4724 5.519927 GTGTAATGCATAAATTTGGACTGCC 59.480 40.000 0.00 0.00 31.89 4.85
4108 4725 5.229887 CGTGTAATGCATAAATTTGGACTGC 59.770 40.000 0.00 5.57 0.00 4.40
4109 4726 6.795053 CGTGTAATGCATAAATTTGGACTG 57.205 37.500 0.00 0.00 0.00 3.51
4124 4741 0.445829 TGCGACAATGGCGTGTAATG 59.554 50.000 11.20 0.00 0.00 1.90
4125 4742 0.446222 GTGCGACAATGGCGTGTAAT 59.554 50.000 11.20 0.00 0.00 1.89
4126 4743 0.601576 AGTGCGACAATGGCGTGTAA 60.602 50.000 11.20 0.00 0.00 2.41
4127 4744 0.601576 AAGTGCGACAATGGCGTGTA 60.602 50.000 11.20 0.00 0.00 2.90
4128 4745 0.601576 TAAGTGCGACAATGGCGTGT 60.602 50.000 11.20 0.00 0.00 4.49
4129 4746 0.515127 TTAAGTGCGACAATGGCGTG 59.485 50.000 11.20 0.00 0.00 5.34
4130 4747 1.231221 TTTAAGTGCGACAATGGCGT 58.769 45.000 11.20 0.00 0.00 5.68
4131 4748 2.542766 ATTTAAGTGCGACAATGGCG 57.457 45.000 3.09 3.09 0.00 5.69
4132 4749 7.979115 TTTATTATTTAAGTGCGACAATGGC 57.021 32.000 0.00 0.00 0.00 4.40
4133 4750 9.515020 ACATTTATTATTTAAGTGCGACAATGG 57.485 29.630 0.00 0.00 0.00 3.16
4177 4794 4.080356 TGGCTATTAGAGAGGCACAACATT 60.080 41.667 0.00 0.00 43.87 2.71
4178 4795 3.455910 TGGCTATTAGAGAGGCACAACAT 59.544 43.478 0.00 0.00 43.87 2.71
4179 4796 2.837591 TGGCTATTAGAGAGGCACAACA 59.162 45.455 0.00 0.00 43.87 3.33
4184 4801 3.519510 AGTTGTTGGCTATTAGAGAGGCA 59.480 43.478 0.00 0.00 46.73 4.75
4185 4802 4.143986 AGTTGTTGGCTATTAGAGAGGC 57.856 45.455 0.00 0.00 39.84 4.70
4186 4803 4.333926 GCAAGTTGTTGGCTATTAGAGAGG 59.666 45.833 4.48 0.00 33.87 3.69
4187 4804 4.937620 TGCAAGTTGTTGGCTATTAGAGAG 59.062 41.667 4.48 0.00 33.87 3.20
4188 4805 4.695455 GTGCAAGTTGTTGGCTATTAGAGA 59.305 41.667 4.48 0.00 33.87 3.10
4189 4806 4.142600 GGTGCAAGTTGTTGGCTATTAGAG 60.143 45.833 4.48 0.00 33.87 2.43
4224 4841 3.181520 CCTCAAAACTAATGCGAGGTTCG 60.182 47.826 0.00 0.00 43.89 3.95
4225 4842 4.342352 CCTCAAAACTAATGCGAGGTTC 57.658 45.455 0.00 0.00 38.76 3.62
4232 4898 5.355350 AGAGCACATACCTCAAAACTAATGC 59.645 40.000 0.00 0.00 0.00 3.56
4235 4901 5.248477 AGGAGAGCACATACCTCAAAACTAA 59.752 40.000 0.00 0.00 0.00 2.24
4243 4909 3.640967 AGATGAAGGAGAGCACATACCTC 59.359 47.826 0.00 0.00 31.89 3.85
4264 4930 0.608130 TCGTTGGTGAGATGGTCCAG 59.392 55.000 0.00 0.00 32.63 3.86
4265 4931 0.320374 GTCGTTGGTGAGATGGTCCA 59.680 55.000 0.00 0.00 0.00 4.02
4266 4932 0.320374 TGTCGTTGGTGAGATGGTCC 59.680 55.000 0.00 0.00 0.00 4.46
4279 4945 1.877443 GGTACTGTTGCCAATGTCGTT 59.123 47.619 0.00 0.00 0.00 3.85
4287 4953 0.106967 TGCACTTGGTACTGTTGCCA 60.107 50.000 0.00 0.52 35.32 4.92
4312 4978 1.804151 GAAATGCACGGCTCACTGTAA 59.196 47.619 0.00 0.00 32.71 2.41
4313 4979 1.001974 AGAAATGCACGGCTCACTGTA 59.998 47.619 0.00 0.00 32.71 2.74
4314 4980 0.250467 AGAAATGCACGGCTCACTGT 60.250 50.000 0.00 0.00 35.02 3.55
4340 5007 6.306397 GTTGCAACCAACTTCTTTTTCTTTG 58.694 36.000 19.15 0.00 46.13 2.77
4341 5008 6.480524 GTTGCAACCAACTTCTTTTTCTTT 57.519 33.333 19.15 0.00 46.13 2.52
4354 5021 2.890311 CACTAGGGATTGTTGCAACCAA 59.110 45.455 26.14 19.30 0.00 3.67
4355 5022 2.107378 TCACTAGGGATTGTTGCAACCA 59.893 45.455 26.14 16.65 0.00 3.67
4356 5023 2.749621 CTCACTAGGGATTGTTGCAACC 59.250 50.000 26.14 11.13 0.00 3.77
4357 5024 2.162408 GCTCACTAGGGATTGTTGCAAC 59.838 50.000 22.83 22.83 0.00 4.17
4358 5025 2.040278 AGCTCACTAGGGATTGTTGCAA 59.960 45.455 0.00 0.00 0.00 4.08
4359 5026 1.630369 AGCTCACTAGGGATTGTTGCA 59.370 47.619 0.00 0.00 0.00 4.08
4388 5055 3.916392 GAGTGGAGGCACACGACGG 62.916 68.421 0.00 0.00 45.80 4.79
4390 5057 2.048127 GGAGTGGAGGCACACGAC 60.048 66.667 6.69 5.68 45.80 4.34
4454 5121 6.347696 ACAAGAAACTGGATGAATGCAAAAA 58.652 32.000 0.00 0.00 0.00 1.94
4455 5122 5.916318 ACAAGAAACTGGATGAATGCAAAA 58.084 33.333 0.00 0.00 0.00 2.44
4456 5123 5.534207 ACAAGAAACTGGATGAATGCAAA 57.466 34.783 0.00 0.00 0.00 3.68
4457 5124 5.769662 ACTACAAGAAACTGGATGAATGCAA 59.230 36.000 0.00 0.00 0.00 4.08
4458 5125 5.316167 ACTACAAGAAACTGGATGAATGCA 58.684 37.500 0.00 0.00 0.00 3.96
4459 5126 5.886960 ACTACAAGAAACTGGATGAATGC 57.113 39.130 0.00 0.00 0.00 3.56
4460 5127 8.571336 AGAAAACTACAAGAAACTGGATGAATG 58.429 33.333 0.00 0.00 0.00 2.67
4461 5128 8.697507 AGAAAACTACAAGAAACTGGATGAAT 57.302 30.769 0.00 0.00 0.00 2.57
4462 5129 8.519799 AAGAAAACTACAAGAAACTGGATGAA 57.480 30.769 0.00 0.00 0.00 2.57
4463 5130 7.993183 AGAAGAAAACTACAAGAAACTGGATGA 59.007 33.333 0.00 0.00 0.00 2.92
4464 5131 8.159344 AGAAGAAAACTACAAGAAACTGGATG 57.841 34.615 0.00 0.00 0.00 3.51
4465 5132 9.274206 GTAGAAGAAAACTACAAGAAACTGGAT 57.726 33.333 0.00 0.00 39.67 3.41
4466 5133 8.483758 AGTAGAAGAAAACTACAAGAAACTGGA 58.516 33.333 0.00 0.00 41.56 3.86
4467 5134 8.664211 AGTAGAAGAAAACTACAAGAAACTGG 57.336 34.615 0.00 0.00 41.56 4.00
4490 5157 9.632638 AAGGCATGTGTTCTTGAATTATATAGT 57.367 29.630 0.00 0.00 0.00 2.12
4495 5162 9.807649 GATTAAAGGCATGTGTTCTTGAATTAT 57.192 29.630 0.00 0.00 0.00 1.28
4496 5163 8.250332 GGATTAAAGGCATGTGTTCTTGAATTA 58.750 33.333 0.00 0.00 0.00 1.40
4497 5164 7.038799 AGGATTAAAGGCATGTGTTCTTGAATT 60.039 33.333 0.00 0.00 0.00 2.17
4498 5165 6.438425 AGGATTAAAGGCATGTGTTCTTGAAT 59.562 34.615 0.00 0.00 0.00 2.57
4499 5166 5.774690 AGGATTAAAGGCATGTGTTCTTGAA 59.225 36.000 0.00 0.00 0.00 2.69
4500 5167 5.324409 AGGATTAAAGGCATGTGTTCTTGA 58.676 37.500 0.00 0.00 0.00 3.02
4501 5168 5.649782 AGGATTAAAGGCATGTGTTCTTG 57.350 39.130 0.00 0.00 0.00 3.02
4502 5169 7.118723 TCATAGGATTAAAGGCATGTGTTCTT 58.881 34.615 0.00 0.00 0.00 2.52
4503 5170 6.662755 TCATAGGATTAAAGGCATGTGTTCT 58.337 36.000 0.00 0.00 0.00 3.01
4504 5171 6.942532 TCATAGGATTAAAGGCATGTGTTC 57.057 37.500 0.00 0.00 0.00 3.18
4505 5172 7.902920 AATCATAGGATTAAAGGCATGTGTT 57.097 32.000 0.00 0.00 41.89 3.32
4506 5173 7.902920 AAATCATAGGATTAAAGGCATGTGT 57.097 32.000 2.54 0.00 42.87 3.72
4507 5174 9.252962 GAAAAATCATAGGATTAAAGGCATGTG 57.747 33.333 2.54 0.00 42.87 3.21
4508 5175 9.205513 AGAAAAATCATAGGATTAAAGGCATGT 57.794 29.630 2.54 0.00 42.87 3.21
4547 5214 9.077885 GGCCTCTTTAATCCACATAATTATCAA 57.922 33.333 0.00 0.00 0.00 2.57
4548 5215 7.669722 GGGCCTCTTTAATCCACATAATTATCA 59.330 37.037 0.84 0.00 0.00 2.15
4549 5216 7.148239 CGGGCCTCTTTAATCCACATAATTATC 60.148 40.741 0.84 0.00 0.00 1.75
4550 5217 6.659242 CGGGCCTCTTTAATCCACATAATTAT 59.341 38.462 0.84 0.00 0.00 1.28
4551 5218 6.001460 CGGGCCTCTTTAATCCACATAATTA 58.999 40.000 0.84 0.00 0.00 1.40
4552 5219 4.827284 CGGGCCTCTTTAATCCACATAATT 59.173 41.667 0.84 0.00 0.00 1.40
4553 5220 4.104102 TCGGGCCTCTTTAATCCACATAAT 59.896 41.667 0.84 0.00 0.00 1.28
4554 5221 3.456644 TCGGGCCTCTTTAATCCACATAA 59.543 43.478 0.84 0.00 0.00 1.90
4555 5222 3.042682 TCGGGCCTCTTTAATCCACATA 58.957 45.455 0.84 0.00 0.00 2.29
4556 5223 1.843851 TCGGGCCTCTTTAATCCACAT 59.156 47.619 0.84 0.00 0.00 3.21
4557 5224 1.209504 CTCGGGCCTCTTTAATCCACA 59.790 52.381 0.84 0.00 0.00 4.17
4558 5225 1.209747 ACTCGGGCCTCTTTAATCCAC 59.790 52.381 0.84 0.00 0.00 4.02
4559 5226 1.485066 GACTCGGGCCTCTTTAATCCA 59.515 52.381 0.84 0.00 0.00 3.41
4560 5227 1.485066 TGACTCGGGCCTCTTTAATCC 59.515 52.381 0.84 0.00 0.00 3.01
4561 5228 2.168728 AGTGACTCGGGCCTCTTTAATC 59.831 50.000 0.84 0.00 0.00 1.75
4562 5229 2.188817 AGTGACTCGGGCCTCTTTAAT 58.811 47.619 0.84 0.00 0.00 1.40
4563 5230 1.640917 AGTGACTCGGGCCTCTTTAA 58.359 50.000 0.84 0.00 0.00 1.52
4564 5231 1.549170 GAAGTGACTCGGGCCTCTTTA 59.451 52.381 0.84 0.00 0.00 1.85
4565 5232 0.321996 GAAGTGACTCGGGCCTCTTT 59.678 55.000 0.84 0.00 0.00 2.52
4566 5233 0.543174 AGAAGTGACTCGGGCCTCTT 60.543 55.000 0.84 0.00 0.00 2.85
4567 5234 1.077625 AGAAGTGACTCGGGCCTCT 59.922 57.895 0.84 0.00 0.00 3.69
4568 5235 1.216710 CAGAAGTGACTCGGGCCTC 59.783 63.158 0.84 0.00 0.00 4.70
4569 5236 2.286523 CCAGAAGTGACTCGGGCCT 61.287 63.158 0.84 0.00 0.00 5.19
4570 5237 2.266055 CCAGAAGTGACTCGGGCC 59.734 66.667 0.00 0.00 0.00 5.80
4571 5238 1.079750 GACCAGAAGTGACTCGGGC 60.080 63.158 0.00 0.00 34.31 6.13
4572 5239 1.213013 CGACCAGAAGTGACTCGGG 59.787 63.158 0.00 0.00 36.79 5.14
4573 5240 0.387367 CACGACCAGAAGTGACTCGG 60.387 60.000 0.00 0.00 40.56 4.63
4574 5241 1.004277 GCACGACCAGAAGTGACTCG 61.004 60.000 0.00 0.00 40.56 4.18
4575 5242 0.667792 GGCACGACCAGAAGTGACTC 60.668 60.000 0.00 0.00 42.79 3.36
4576 5243 1.367840 GGCACGACCAGAAGTGACT 59.632 57.895 0.00 0.00 42.79 3.41
4577 5244 0.249911 AAGGCACGACCAGAAGTGAC 60.250 55.000 0.00 0.00 46.26 3.67
4578 5245 1.334160 TAAGGCACGACCAGAAGTGA 58.666 50.000 0.00 0.00 43.14 3.41
4579 5246 2.002586 CATAAGGCACGACCAGAAGTG 58.997 52.381 0.00 0.00 43.14 3.16
4580 5247 1.623811 ACATAAGGCACGACCAGAAGT 59.376 47.619 0.00 0.00 43.14 3.01
4581 5248 2.386661 ACATAAGGCACGACCAGAAG 57.613 50.000 0.00 0.00 43.14 2.85
4582 5249 2.418197 GCTACATAAGGCACGACCAGAA 60.418 50.000 0.00 0.00 43.14 3.02
4583 5250 1.136305 GCTACATAAGGCACGACCAGA 59.864 52.381 0.00 0.00 43.14 3.86
4584 5251 1.571919 GCTACATAAGGCACGACCAG 58.428 55.000 0.00 0.00 43.14 4.00
4585 5252 3.752796 GCTACATAAGGCACGACCA 57.247 52.632 0.00 0.00 43.14 4.02
4593 5260 2.039084 GGGATGAGGTGGCTACATAAGG 59.961 54.545 1.52 0.00 0.00 2.69
4594 5261 2.039084 GGGGATGAGGTGGCTACATAAG 59.961 54.545 1.52 0.00 0.00 1.73
4595 5262 2.054799 GGGGATGAGGTGGCTACATAA 58.945 52.381 1.52 0.00 0.00 1.90
4596 5263 1.061735 TGGGGATGAGGTGGCTACATA 60.062 52.381 1.52 0.00 0.00 2.29
4597 5264 0.327480 TGGGGATGAGGTGGCTACAT 60.327 55.000 1.52 0.00 0.00 2.29
4598 5265 0.327480 ATGGGGATGAGGTGGCTACA 60.327 55.000 1.52 0.00 0.00 2.74
4599 5266 1.625818 CTATGGGGATGAGGTGGCTAC 59.374 57.143 0.00 0.00 0.00 3.58
4600 5267 1.507742 TCTATGGGGATGAGGTGGCTA 59.492 52.381 0.00 0.00 0.00 3.93
4601 5268 0.268869 TCTATGGGGATGAGGTGGCT 59.731 55.000 0.00 0.00 0.00 4.75
4602 5269 1.140312 TTCTATGGGGATGAGGTGGC 58.860 55.000 0.00 0.00 0.00 5.01
4603 5270 4.459852 AATTTCTATGGGGATGAGGTGG 57.540 45.455 0.00 0.00 0.00 4.61
4604 5271 5.515534 CCCTAATTTCTATGGGGATGAGGTG 60.516 48.000 0.00 0.00 39.42 4.00
4605 5272 4.603610 CCCTAATTTCTATGGGGATGAGGT 59.396 45.833 0.00 0.00 39.42 3.85
4606 5273 4.603610 ACCCTAATTTCTATGGGGATGAGG 59.396 45.833 1.64 0.00 43.72 3.86
4607 5274 5.850046 ACCCTAATTTCTATGGGGATGAG 57.150 43.478 1.64 0.00 43.72 2.90
4608 5275 5.074515 GGAACCCTAATTTCTATGGGGATGA 59.925 44.000 1.64 0.00 43.72 2.92
4609 5276 5.075067 AGGAACCCTAATTTCTATGGGGATG 59.925 44.000 1.64 0.00 43.72 3.51
4610 5277 5.243566 AGGAACCCTAATTTCTATGGGGAT 58.756 41.667 1.64 0.00 43.72 3.85
4611 5278 4.652628 AGGAACCCTAATTTCTATGGGGA 58.347 43.478 1.64 0.00 43.72 4.81
4612 5279 5.403558 AAGGAACCCTAATTTCTATGGGG 57.596 43.478 0.00 0.00 43.72 4.96
4613 5280 6.490381 GCTAAAGGAACCCTAATTTCTATGGG 59.510 42.308 0.00 0.00 44.89 4.00
4614 5281 7.290813 AGCTAAAGGAACCCTAATTTCTATGG 58.709 38.462 0.00 0.00 31.13 2.74
4615 5282 8.753497 AAGCTAAAGGAACCCTAATTTCTATG 57.247 34.615 0.00 0.00 31.13 2.23
4616 5283 7.999545 GGAAGCTAAAGGAACCCTAATTTCTAT 59.000 37.037 0.00 0.00 31.13 1.98
4617 5284 7.184022 AGGAAGCTAAAGGAACCCTAATTTCTA 59.816 37.037 0.00 0.00 31.13 2.10
4618 5285 6.011540 AGGAAGCTAAAGGAACCCTAATTTCT 60.012 38.462 0.00 0.00 31.13 2.52
4619 5286 6.188407 AGGAAGCTAAAGGAACCCTAATTTC 58.812 40.000 0.00 0.00 31.13 2.17
4620 5287 6.011540 AGAGGAAGCTAAAGGAACCCTAATTT 60.012 38.462 0.00 0.00 31.13 1.82
4621 5288 5.492887 AGAGGAAGCTAAAGGAACCCTAATT 59.507 40.000 0.00 0.00 31.13 1.40
4622 5289 5.040330 AGAGGAAGCTAAAGGAACCCTAAT 58.960 41.667 0.00 0.00 31.13 1.73
4623 5290 4.225267 CAGAGGAAGCTAAAGGAACCCTAA 59.775 45.833 0.00 0.00 31.13 2.69
4624 5291 3.775316 CAGAGGAAGCTAAAGGAACCCTA 59.225 47.826 0.00 0.00 31.13 3.53
4625 5292 2.573915 CAGAGGAAGCTAAAGGAACCCT 59.426 50.000 0.00 0.00 33.87 4.34
4626 5293 2.356227 CCAGAGGAAGCTAAAGGAACCC 60.356 54.545 0.00 0.00 0.00 4.11
4627 5294 2.941860 GCCAGAGGAAGCTAAAGGAACC 60.942 54.545 0.00 0.00 0.00 3.62
4628 5295 2.360844 GCCAGAGGAAGCTAAAGGAAC 58.639 52.381 0.00 0.00 0.00 3.62
4629 5296 1.066143 CGCCAGAGGAAGCTAAAGGAA 60.066 52.381 0.00 0.00 0.00 3.36
4630 5297 0.537188 CGCCAGAGGAAGCTAAAGGA 59.463 55.000 0.00 0.00 0.00 3.36
4631 5298 1.092345 GCGCCAGAGGAAGCTAAAGG 61.092 60.000 0.00 0.00 0.00 3.11
4632 5299 1.092345 GGCGCCAGAGGAAGCTAAAG 61.092 60.000 24.80 0.00 0.00 1.85
4633 5300 1.078426 GGCGCCAGAGGAAGCTAAA 60.078 57.895 24.80 0.00 0.00 1.85
4634 5301 2.584608 GGCGCCAGAGGAAGCTAA 59.415 61.111 24.80 0.00 0.00 3.09
4635 5302 3.838271 CGGCGCCAGAGGAAGCTA 61.838 66.667 28.98 0.00 0.00 3.32
4656 5323 3.917760 GGAGATGAGGCGGACCGG 61.918 72.222 17.22 0.00 42.76 5.28
4657 5324 4.271816 CGGAGATGAGGCGGACCG 62.272 72.222 10.29 10.29 42.76 4.79
4658 5325 2.203771 ATCGGAGATGAGGCGGACC 61.204 63.158 0.00 0.00 45.12 4.46
4659 5326 1.006805 CATCGGAGATGAGGCGGAC 60.007 63.158 4.12 0.00 45.12 4.79
4660 5327 2.203082 CCATCGGAGATGAGGCGGA 61.203 63.158 11.22 0.00 45.12 5.54
4661 5328 2.341543 CCATCGGAGATGAGGCGG 59.658 66.667 11.22 0.00 45.12 6.13
4662 5329 2.356793 GCCATCGGAGATGAGGCG 60.357 66.667 11.22 0.00 45.12 5.52
4663 5330 0.250640 AATGCCATCGGAGATGAGGC 60.251 55.000 11.22 7.80 45.12 4.70
4664 5331 2.354503 CCTAATGCCATCGGAGATGAGG 60.355 54.545 11.22 6.07 45.12 3.86
4665 5332 2.354503 CCCTAATGCCATCGGAGATGAG 60.355 54.545 11.22 3.52 45.12 2.90
4666 5333 1.625315 CCCTAATGCCATCGGAGATGA 59.375 52.381 11.22 0.00 45.12 2.92
4667 5334 1.947678 GCCCTAATGCCATCGGAGATG 60.948 57.143 3.21 3.21 45.12 2.90
4668 5335 0.326264 GCCCTAATGCCATCGGAGAT 59.674 55.000 0.00 0.00 45.12 2.75
4669 5336 1.754745 GCCCTAATGCCATCGGAGA 59.245 57.895 0.00 0.00 45.75 3.71
4670 5337 4.386413 GCCCTAATGCCATCGGAG 57.614 61.111 0.00 0.00 0.00 4.63
4688 5355 3.585990 GATTCACCGCGCCCCATG 61.586 66.667 0.00 0.00 0.00 3.66
4689 5356 4.875713 GGATTCACCGCGCCCCAT 62.876 66.667 0.00 0.00 0.00 4.00
4692 5359 4.467084 TCAGGATTCACCGCGCCC 62.467 66.667 0.00 0.00 44.74 6.13
4693 5360 3.195698 GTCAGGATTCACCGCGCC 61.196 66.667 0.00 0.00 44.74 6.53
4694 5361 3.195698 GGTCAGGATTCACCGCGC 61.196 66.667 0.00 0.00 44.74 6.86
4695 5362 2.511600 GGGTCAGGATTCACCGCG 60.512 66.667 0.00 0.00 44.74 6.46
4696 5363 0.539986 TAAGGGTCAGGATTCACCGC 59.460 55.000 0.00 0.00 44.74 5.68
4697 5364 1.134491 GGTAAGGGTCAGGATTCACCG 60.134 57.143 0.00 0.00 44.74 4.94
4698 5365 1.134491 CGGTAAGGGTCAGGATTCACC 60.134 57.143 0.00 0.00 39.35 4.02
4699 5366 1.134491 CCGGTAAGGGTCAGGATTCAC 60.134 57.143 0.00 0.00 35.97 3.18
4700 5367 1.200519 CCGGTAAGGGTCAGGATTCA 58.799 55.000 0.00 0.00 35.97 2.57
4701 5368 1.134491 CACCGGTAAGGGTCAGGATTC 60.134 57.143 6.87 0.00 46.96 2.52
4702 5369 0.909623 CACCGGTAAGGGTCAGGATT 59.090 55.000 6.87 0.00 46.96 3.01
4703 5370 0.981277 CCACCGGTAAGGGTCAGGAT 60.981 60.000 6.87 0.00 46.96 3.24
4704 5371 1.611261 CCACCGGTAAGGGTCAGGA 60.611 63.158 6.87 0.00 46.96 3.86
4705 5372 2.666098 CCCACCGGTAAGGGTCAGG 61.666 68.421 19.84 8.92 46.96 3.86
4706 5373 1.611261 TCCCACCGGTAAGGGTCAG 60.611 63.158 25.33 3.70 46.96 3.51
4707 5374 1.611261 CTCCCACCGGTAAGGGTCA 60.611 63.158 25.33 9.95 46.96 4.02
4708 5375 2.364780 CCTCCCACCGGTAAGGGTC 61.365 68.421 25.33 0.00 46.96 4.46
4709 5376 2.285144 CCTCCCACCGGTAAGGGT 60.285 66.667 25.33 0.00 46.96 4.34
4710 5377 3.087906 CCCTCCCACCGGTAAGGG 61.088 72.222 26.15 26.15 46.96 3.95
4712 5379 2.253403 GAAGCCCTCCCACCGGTAAG 62.253 65.000 6.87 5.19 0.00 2.34
4713 5380 2.204029 AAGCCCTCCCACCGGTAA 60.204 61.111 6.87 0.00 0.00 2.85
4714 5381 2.686106 GAAGCCCTCCCACCGGTA 60.686 66.667 6.87 0.00 0.00 4.02
4717 5384 2.573609 CTTACGAAGCCCTCCCACCG 62.574 65.000 0.00 0.00 0.00 4.94
4718 5385 1.221021 CTTACGAAGCCCTCCCACC 59.779 63.158 0.00 0.00 0.00 4.61
4719 5386 0.108281 GTCTTACGAAGCCCTCCCAC 60.108 60.000 0.00 0.00 0.00 4.61
4720 5387 1.601419 CGTCTTACGAAGCCCTCCCA 61.601 60.000 0.00 0.00 46.05 4.37
4721 5388 1.141234 CGTCTTACGAAGCCCTCCC 59.859 63.158 0.00 0.00 46.05 4.30
4722 5389 0.245813 AACGTCTTACGAAGCCCTCC 59.754 55.000 6.44 0.00 46.05 4.30
4723 5390 1.626747 GAACGTCTTACGAAGCCCTC 58.373 55.000 6.44 0.00 46.05 4.30
4724 5391 0.245813 GGAACGTCTTACGAAGCCCT 59.754 55.000 6.44 0.00 46.05 5.19
4725 5392 0.245813 AGGAACGTCTTACGAAGCCC 59.754 55.000 6.44 2.03 46.05 5.19
4726 5393 1.991264 GAAGGAACGTCTTACGAAGCC 59.009 52.381 6.44 4.49 46.05 4.35
4727 5394 1.647702 CGAAGGAACGTCTTACGAAGC 59.352 52.381 6.44 0.00 46.05 3.86
4728 5395 3.162068 CTCGAAGGAACGTCTTACGAAG 58.838 50.000 6.44 0.00 46.05 3.79
4729 5396 2.549754 ACTCGAAGGAACGTCTTACGAA 59.450 45.455 6.44 0.00 46.05 3.85
4730 5397 2.146342 ACTCGAAGGAACGTCTTACGA 58.854 47.619 6.44 0.47 46.05 3.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.