Multiple sequence alignment - TraesCS5D01G147100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G147100 chr5D 100.000 3921 0 0 934 4854 233508519 233504599 0.000000e+00 7241.0
1 TraesCS5D01G147100 chr5D 100.000 615 0 0 1 615 233509452 233508838 0.000000e+00 1136.0
2 TraesCS5D01G147100 chr5D 84.636 371 35 13 999 1348 320921212 320920843 2.780000e-92 350.0
3 TraesCS5D01G147100 chr5D 83.288 371 40 12 999 1348 531913357 531913726 6.060000e-84 322.0
4 TraesCS5D01G147100 chr5D 98.649 74 1 0 4648 4721 483701825 483701752 1.100000e-26 132.0
5 TraesCS5D01G147100 chr5A 91.326 1591 99 21 974 2558 321720959 321719402 0.000000e+00 2137.0
6 TraesCS5D01G147100 chr5A 93.439 1326 48 10 3026 4347 321718846 321717556 0.000000e+00 1930.0
7 TraesCS5D01G147100 chr5A 90.605 628 34 11 5 614 321721618 321720998 0.000000e+00 809.0
8 TraesCS5D01G147100 chr5A 91.150 452 23 8 2578 3025 321719415 321718977 8.990000e-167 597.0
9 TraesCS5D01G147100 chr5A 85.586 222 17 9 4392 4600 321717540 321717321 8.180000e-53 219.0
10 TraesCS5D01G147100 chr5A 93.151 73 1 3 4651 4721 673556072 673556002 2.390000e-18 104.0
11 TraesCS5D01G147100 chr5B 94.376 1209 45 12 3026 4218 271302637 271303838 0.000000e+00 1834.0
12 TraesCS5D01G147100 chr5B 90.086 1049 52 16 971 2008 271300545 271301552 0.000000e+00 1314.0
13 TraesCS5D01G147100 chr5B 92.382 827 36 15 2043 2862 271301617 271302423 0.000000e+00 1153.0
14 TraesCS5D01G147100 chr5B 87.598 637 50 13 1 614 271299877 271300507 0.000000e+00 712.0
15 TraesCS5D01G147100 chr5B 81.046 306 27 14 4370 4646 271303893 271304196 1.060000e-51 215.0
16 TraesCS5D01G147100 chr5B 98.165 109 1 1 2917 3025 271302426 271302533 6.410000e-44 189.0
17 TraesCS5D01G147100 chr4A 86.575 365 34 7 999 1348 472918001 472918365 5.890000e-104 388.0
18 TraesCS5D01G147100 chr4B 86.027 365 36 7 999 1348 146498330 146497966 1.280000e-100 377.0
19 TraesCS5D01G147100 chr4B 85.437 206 30 0 4649 4854 596641657 596641452 1.060000e-51 215.0
20 TraesCS5D01G147100 chr4D 85.831 367 33 10 999 1348 102168629 102168265 5.930000e-99 372.0
21 TraesCS5D01G147100 chr4D 83.721 86 8 5 4649 4733 338475916 338475836 5.210000e-10 76.8
22 TraesCS5D01G147100 chr3A 82.210 371 44 13 999 1348 645742378 645742009 2.840000e-77 300.0
23 TraesCS5D01G147100 chr3A 80.541 370 50 11 1000 1348 260681283 260680915 1.040000e-66 265.0
24 TraesCS5D01G147100 chr2A 87.500 160 18 2 4644 4802 132256043 132255885 2.980000e-42 183.0
25 TraesCS5D01G147100 chr3D 81.579 228 25 7 1137 1348 418847006 418847232 6.460000e-39 172.0
26 TraesCS5D01G147100 chr1B 80.447 179 26 9 4649 4823 645257349 645257522 1.420000e-25 128.0
27 TraesCS5D01G147100 chr7D 96.053 76 1 2 4648 4723 38098251 38098178 6.600000e-24 122.0
28 TraesCS5D01G147100 chr6B 92.045 88 3 3 4651 4738 690887175 690887258 2.370000e-23 121.0
29 TraesCS5D01G147100 chr1D 75.943 212 36 14 4649 4853 396889994 396889791 1.440000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G147100 chr5D 233504599 233509452 4853 True 4188.500000 7241 100.000000 1 4854 2 chr5D.!!$R3 4853
1 TraesCS5D01G147100 chr5A 321717321 321721618 4297 True 1138.400000 2137 90.421200 5 4600 5 chr5A.!!$R2 4595
2 TraesCS5D01G147100 chr5B 271299877 271304196 4319 False 902.833333 1834 90.608833 1 4646 6 chr5B.!!$F1 4645

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
479 502 0.813610 CCGCTAATCATTCGCCACCA 60.814 55.0 0.0 0.0 0.0 4.17 F
1978 2018 0.035630 ACATCACTGGAAGCCTGCTC 60.036 55.0 0.0 0.0 37.6 4.26 F
2035 2112 0.040067 CACCTGAGCCGCACTTTTTC 60.040 55.0 0.0 0.0 0.0 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2001 2041 0.034767 AGGTGCATGGTCAGTGGATG 60.035 55.000 0.0 0.0 0.00 3.51 R
3687 3905 0.229753 CAGACATACGAAATCGGCGC 59.770 55.000 0.0 0.0 44.95 6.53 R
4012 4230 2.483714 CCGACCACCAGAATCCATACAG 60.484 54.545 0.0 0.0 0.00 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 2.740055 GCCAGCCGTCACAGTCAG 60.740 66.667 0.00 0.00 0.00 3.51
62 63 1.451387 GTGGTCCTTATGTGGCCGG 60.451 63.158 0.00 0.00 0.00 6.13
127 128 1.810030 GTTGTCTCCGCCCATCGAC 60.810 63.158 0.00 0.00 41.67 4.20
128 129 1.982395 TTGTCTCCGCCCATCGACT 60.982 57.895 0.00 0.00 41.67 4.18
184 185 6.932400 TGCCTCAAAAAGACTCGTTATCTTTA 59.068 34.615 10.30 0.00 43.91 1.85
187 188 9.372369 CCTCAAAAAGACTCGTTATCTTTATCT 57.628 33.333 10.30 0.00 43.91 1.98
189 190 9.923143 TCAAAAAGACTCGTTATCTTTATCTGA 57.077 29.630 10.30 10.39 43.91 3.27
191 192 7.972623 AAAGACTCGTTATCTTTATCTGACG 57.027 36.000 8.78 0.00 43.10 4.35
240 242 7.171630 TCTCGCTCCTAATTATTATTCCCTC 57.828 40.000 0.00 0.00 0.00 4.30
281 283 4.748600 GCGTTAGAGAGTACCAAACAAAGT 59.251 41.667 0.00 0.00 0.00 2.66
289 291 6.790319 AGAGTACCAAACAAAGTAATGGGAT 58.210 36.000 0.00 0.00 37.26 3.85
301 303 4.273318 AGTAATGGGATGAAGCCAAAGAC 58.727 43.478 0.00 0.00 0.00 3.01
306 308 1.943340 GGATGAAGCCAAAGACGATCC 59.057 52.381 0.00 0.00 0.00 3.36
384 391 1.557269 ATCCAGGCCAGTGAGTGACC 61.557 60.000 5.01 0.00 0.00 4.02
415 422 4.347453 CCGTTGCCAAGCCAGCAC 62.347 66.667 0.00 0.00 40.69 4.40
416 423 3.594775 CGTTGCCAAGCCAGCACA 61.595 61.111 0.00 0.00 40.69 4.57
479 502 0.813610 CCGCTAATCATTCGCCACCA 60.814 55.000 0.00 0.00 0.00 4.17
525 551 1.135315 CCCTCGTCAATTCGACCGTTA 60.135 52.381 0.00 0.00 42.07 3.18
614 640 3.039526 CTCCCTCCCTCCCTCCCT 61.040 72.222 0.00 0.00 0.00 4.20
954 980 3.154710 CACCACCTAGGGTTTCTTTTCC 58.845 50.000 14.81 0.00 43.89 3.13
955 981 3.061369 ACCACCTAGGGTTTCTTTTCCT 58.939 45.455 14.81 0.00 43.89 3.36
956 982 3.465966 ACCACCTAGGGTTTCTTTTCCTT 59.534 43.478 14.81 0.00 43.89 3.36
957 983 4.079970 CCACCTAGGGTTTCTTTTCCTTC 58.920 47.826 14.81 0.00 31.02 3.46
958 984 4.079970 CACCTAGGGTTTCTTTTCCTTCC 58.920 47.826 14.81 0.00 31.02 3.46
959 985 3.725267 ACCTAGGGTTTCTTTTCCTTCCA 59.275 43.478 14.81 0.00 27.29 3.53
960 986 4.169264 ACCTAGGGTTTCTTTTCCTTCCAA 59.831 41.667 14.81 0.00 27.29 3.53
961 987 4.767409 CCTAGGGTTTCTTTTCCTTCCAAG 59.233 45.833 0.00 0.00 32.46 3.61
962 988 8.626404 ACCTAGGGTTTCTTTTCCTTCCAAGG 62.626 46.154 14.81 0.00 39.34 3.61
1428 1455 1.393539 CTTGTTGCGTACCGATTCCTG 59.606 52.381 0.00 0.00 0.00 3.86
1460 1489 3.535561 CACGGAAATCTGCTACCTTGAT 58.464 45.455 0.00 0.00 0.00 2.57
1603 1636 0.320683 TGATGTTGCTGTGGAGGACG 60.321 55.000 0.00 0.00 0.00 4.79
1606 1639 1.668151 GTTGCTGTGGAGGACGGAC 60.668 63.158 0.00 0.00 31.77 4.79
1607 1640 2.137528 TTGCTGTGGAGGACGGACA 61.138 57.895 0.00 0.00 31.77 4.02
1608 1641 2.099652 TTGCTGTGGAGGACGGACAG 62.100 60.000 0.00 0.00 40.14 3.51
1609 1642 2.973899 CTGTGGAGGACGGACAGG 59.026 66.667 0.00 0.00 34.63 4.00
1709 1742 2.673368 GGCATATATAGCTGCAACGACC 59.327 50.000 9.86 0.00 40.18 4.79
1724 1757 5.650266 TGCAACGACCAATTAGGAATGTAAT 59.350 36.000 0.00 0.00 41.22 1.89
1735 1768 6.925610 TTAGGAATGTAATGTGTCAGCATC 57.074 37.500 0.00 0.00 0.00 3.91
1850 1890 5.574891 TGCTTTGGAAACATATAACGCAT 57.425 34.783 0.00 0.00 42.32 4.73
1867 1907 2.497138 GCATCATCAATCCACCATCGA 58.503 47.619 0.00 0.00 0.00 3.59
1919 1959 5.663456 ACGTACTTGTCTCCACAGTAAAAA 58.337 37.500 0.00 0.00 32.71 1.94
1962 2002 1.293498 GGAGCCACAGTCGTCACAT 59.707 57.895 0.00 0.00 0.00 3.21
1963 2003 0.737715 GGAGCCACAGTCGTCACATC 60.738 60.000 0.00 0.00 0.00 3.06
1965 2005 0.319900 AGCCACAGTCGTCACATCAC 60.320 55.000 0.00 0.00 0.00 3.06
1966 2006 0.319900 GCCACAGTCGTCACATCACT 60.320 55.000 0.00 0.00 0.00 3.41
1969 2009 1.000274 CACAGTCGTCACATCACTGGA 60.000 52.381 3.52 0.00 41.66 3.86
1974 2014 0.036952 CGTCACATCACTGGAAGCCT 60.037 55.000 0.00 0.00 37.60 4.58
1975 2015 1.446907 GTCACATCACTGGAAGCCTG 58.553 55.000 0.00 0.00 37.60 4.85
1976 2016 0.321919 TCACATCACTGGAAGCCTGC 60.322 55.000 0.00 0.00 37.60 4.85
1977 2017 0.322277 CACATCACTGGAAGCCTGCT 60.322 55.000 0.00 0.00 37.60 4.24
1978 2018 0.035630 ACATCACTGGAAGCCTGCTC 60.036 55.000 0.00 0.00 37.60 4.26
1991 2031 1.950828 CCTGCTCTAACTGCATGGAG 58.049 55.000 13.34 13.34 39.86 3.86
2001 2041 6.810911 TCTAACTGCATGGAGTTCTATCTTC 58.189 40.000 32.49 0.00 37.38 2.87
2008 2048 5.454471 GCATGGAGTTCTATCTTCATCCACT 60.454 44.000 0.00 0.00 39.51 4.00
2025 2102 1.748122 CTGACCATGCACCTGAGCC 60.748 63.158 0.00 0.00 0.00 4.70
2031 2108 3.557903 ATGCACCTGAGCCGCACTT 62.558 57.895 0.00 0.00 38.73 3.16
2032 2109 2.980233 GCACCTGAGCCGCACTTT 60.980 61.111 0.00 0.00 0.00 2.66
2033 2110 2.555547 GCACCTGAGCCGCACTTTT 61.556 57.895 0.00 0.00 0.00 2.27
2035 2112 0.040067 CACCTGAGCCGCACTTTTTC 60.040 55.000 0.00 0.00 0.00 2.29
2036 2113 0.179018 ACCTGAGCCGCACTTTTTCT 60.179 50.000 0.00 0.00 0.00 2.52
2037 2114 0.954452 CCTGAGCCGCACTTTTTCTT 59.046 50.000 0.00 0.00 0.00 2.52
2038 2115 2.151202 CCTGAGCCGCACTTTTTCTTA 58.849 47.619 0.00 0.00 0.00 2.10
2039 2116 2.749621 CCTGAGCCGCACTTTTTCTTAT 59.250 45.455 0.00 0.00 0.00 1.73
2040 2117 3.938963 CCTGAGCCGCACTTTTTCTTATA 59.061 43.478 0.00 0.00 0.00 0.98
2041 2118 4.394920 CCTGAGCCGCACTTTTTCTTATAA 59.605 41.667 0.00 0.00 0.00 0.98
2099 2178 5.297569 AGTAACTTTCTTGCTCCTCTTGT 57.702 39.130 0.00 0.00 0.00 3.16
2175 2254 3.744942 GTCCTTCACCGGTTAGACTTTTC 59.255 47.826 2.97 0.00 0.00 2.29
2182 2261 3.181462 ACCGGTTAGACTTTTCTTCCGTT 60.181 43.478 0.00 1.78 42.03 4.44
2196 2275 1.169577 TCCGTTGTGTTTGTTGCTGT 58.830 45.000 0.00 0.00 0.00 4.40
2262 2345 5.511234 AATGCTATCCTGCTTGATTTCAC 57.489 39.130 0.00 0.00 0.00 3.18
2469 2552 5.564768 TGTTTTGTGTTGTAGATTGTGACG 58.435 37.500 0.00 0.00 0.00 4.35
2558 2641 2.097466 CCATCGGTTGCATCTTTGGTAC 59.903 50.000 0.00 0.00 0.00 3.34
2561 2644 1.165270 GGTTGCATCTTTGGTACGCT 58.835 50.000 0.00 0.00 0.00 5.07
2582 2665 5.506151 CGCTGATTGCAATTAGGCTTTGATA 60.506 40.000 26.93 0.00 43.06 2.15
2621 2704 7.094377 TGCCTTATCCTTGTATTCAGAACAAAC 60.094 37.037 0.00 0.00 36.46 2.93
2629 2712 7.855904 CCTTGTATTCAGAACAAACAGTACAAC 59.144 37.037 0.00 0.00 36.46 3.32
2686 2769 4.152223 CAGATAAATCGTCACACTTGTGCA 59.848 41.667 4.38 0.00 45.25 4.57
2687 2770 4.754618 AGATAAATCGTCACACTTGTGCAA 59.245 37.500 4.38 0.00 45.25 4.08
2688 2771 3.988379 AAATCGTCACACTTGTGCAAT 57.012 38.095 4.38 0.00 45.25 3.56
2989 3077 7.123247 ACTTCCTGAGCAAAATACAATAGCATT 59.877 33.333 0.00 0.00 0.00 3.56
3067 3285 3.496160 GCTCCAGTTTTCCACAGTCCTTA 60.496 47.826 0.00 0.00 0.00 2.69
3081 3299 6.536582 CCACAGTCCTTATGTTATCTGAACTG 59.463 42.308 0.00 0.00 0.00 3.16
3086 3304 8.037758 AGTCCTTATGTTATCTGAACTGAACAG 58.962 37.037 0.00 0.00 35.41 3.16
3160 3378 1.359848 CGATTGTCAAGGTCTTCCCG 58.640 55.000 0.00 0.00 38.74 5.14
3264 3482 5.689383 TGCTTCACATTTTCAGGTACTTC 57.311 39.130 0.00 0.00 34.60 3.01
3273 3491 8.571336 CACATTTTCAGGTACTTCATCTTCTTT 58.429 33.333 0.00 0.00 34.60 2.52
3359 3577 4.265904 TGGGATGGTGTATTAGTATGCG 57.734 45.455 0.00 0.00 0.00 4.73
3373 3591 4.308899 AGTATGCGTGATCCTAGTGAAC 57.691 45.455 0.00 0.00 0.00 3.18
3414 3632 8.703743 CCATTATTCCTTGTTCCAATGGATAAA 58.296 33.333 1.39 0.00 43.24 1.40
3692 3910 4.593597 TTAAGAGAAACATAAAGCGCCG 57.406 40.909 2.29 0.00 0.00 6.46
3967 4185 8.885494 ATCTTGATTTATCAGCTACTCAGTTC 57.115 34.615 0.00 0.00 38.19 3.01
4052 4270 2.297701 GGAAACTGAACTGCCACTCAA 58.702 47.619 0.00 0.00 0.00 3.02
4079 4312 4.760530 TCCCTGATGTTTCTATCTGGTG 57.239 45.455 9.74 3.70 41.81 4.17
4240 4474 3.230284 GTCCTCATCATGGGGCGA 58.770 61.111 0.00 0.00 38.12 5.54
4243 4477 2.796193 CCTCATCATGGGGCGACGA 61.796 63.158 0.00 0.00 26.78 4.20
4244 4478 1.143838 CTCATCATGGGGCGACGAA 59.856 57.895 0.00 0.00 0.00 3.85
4257 4491 4.355925 ACGAAGTTGCGGAAGACC 57.644 55.556 0.00 0.00 37.78 3.85
4258 4492 1.301479 ACGAAGTTGCGGAAGACCC 60.301 57.895 0.00 0.00 37.78 4.46
4263 4497 1.896660 GTTGCGGAAGACCCTTGCA 60.897 57.895 0.00 0.00 0.00 4.08
4264 4498 1.074775 TTGCGGAAGACCCTTGCAT 59.925 52.632 0.00 0.00 35.20 3.96
4267 4501 0.603065 GCGGAAGACCCTTGCATTTT 59.397 50.000 0.00 0.00 0.00 1.82
4276 4510 0.795735 CCTTGCATTTTGCTCGCTCG 60.796 55.000 0.75 0.00 45.31 5.03
4284 4518 0.306533 TTTGCTCGCTCGTTCCAAAC 59.693 50.000 0.00 0.00 0.00 2.93
4287 4521 0.164002 GCTCGCTCGTTCCAAACTTC 59.836 55.000 0.00 0.00 0.00 3.01
4288 4522 1.784525 CTCGCTCGTTCCAAACTTCT 58.215 50.000 0.00 0.00 0.00 2.85
4296 4530 4.369182 TCGTTCCAAACTTCTCAAGAGAC 58.631 43.478 0.00 0.00 37.14 3.36
4297 4531 4.119862 CGTTCCAAACTTCTCAAGAGACA 58.880 43.478 0.00 0.00 37.14 3.41
4298 4532 4.752101 CGTTCCAAACTTCTCAAGAGACAT 59.248 41.667 0.00 0.00 37.14 3.06
4299 4533 5.107298 CGTTCCAAACTTCTCAAGAGACATC 60.107 44.000 0.00 0.00 37.14 3.06
4300 4534 5.551305 TCCAAACTTCTCAAGAGACATCA 57.449 39.130 0.00 0.00 37.14 3.07
4301 4535 6.119240 TCCAAACTTCTCAAGAGACATCAT 57.881 37.500 0.00 0.00 37.14 2.45
4302 4536 6.169094 TCCAAACTTCTCAAGAGACATCATC 58.831 40.000 0.00 0.00 37.14 2.92
4329 4568 2.829720 AGCGACATCCTTGTACCTTGTA 59.170 45.455 0.00 0.00 35.79 2.41
4343 4582 9.840427 CTTGTACCTTGTAATTTTGTAAGGATG 57.160 33.333 8.70 0.00 41.71 3.51
4347 4586 6.780522 ACCTTGTAATTTTGTAAGGATGGTGT 59.219 34.615 8.70 0.00 41.71 4.16
4348 4587 7.289084 ACCTTGTAATTTTGTAAGGATGGTGTT 59.711 33.333 8.70 0.00 41.71 3.32
4349 4588 7.598493 CCTTGTAATTTTGTAAGGATGGTGTTG 59.402 37.037 0.00 0.00 41.71 3.33
4350 4589 6.987386 TGTAATTTTGTAAGGATGGTGTTGG 58.013 36.000 0.00 0.00 0.00 3.77
4352 4591 5.722021 ATTTTGTAAGGATGGTGTTGGTC 57.278 39.130 0.00 0.00 0.00 4.02
4353 4592 2.871096 TGTAAGGATGGTGTTGGTCC 57.129 50.000 0.00 0.00 0.00 4.46
4354 4593 2.344592 TGTAAGGATGGTGTTGGTCCT 58.655 47.619 0.00 0.00 44.04 3.85
4356 4595 4.108570 TGTAAGGATGGTGTTGGTCCTAT 58.891 43.478 0.00 0.00 41.40 2.57
4358 4597 3.933861 AGGATGGTGTTGGTCCTATTC 57.066 47.619 0.00 0.00 40.49 1.75
4359 4598 2.170607 AGGATGGTGTTGGTCCTATTCG 59.829 50.000 0.00 0.00 40.49 3.34
4360 4599 1.940613 GATGGTGTTGGTCCTATTCGC 59.059 52.381 0.00 0.00 0.00 4.70
4361 4600 0.687920 TGGTGTTGGTCCTATTCGCA 59.312 50.000 0.00 0.00 0.00 5.10
4362 4601 1.072489 TGGTGTTGGTCCTATTCGCAA 59.928 47.619 0.00 0.00 0.00 4.85
4363 4602 2.156098 GGTGTTGGTCCTATTCGCAAA 58.844 47.619 0.00 0.00 0.00 3.68
4364 4603 2.554893 GGTGTTGGTCCTATTCGCAAAA 59.445 45.455 0.00 0.00 0.00 2.44
4365 4604 3.004944 GGTGTTGGTCCTATTCGCAAAAA 59.995 43.478 0.00 0.00 0.00 1.94
4407 4646 4.499696 CCACAAATCCTTCACCAAAGTCAC 60.500 45.833 0.00 0.00 32.69 3.67
4459 4698 2.515523 CCGAGCCAAGCCTGGATG 60.516 66.667 5.23 0.00 43.04 3.51
4492 4750 2.548480 TCTAGTCGTGTATCAGCATCCG 59.452 50.000 0.00 0.00 0.00 4.18
4496 4754 1.202371 TCGTGTATCAGCATCCGGTTC 60.202 52.381 0.00 0.00 0.00 3.62
4501 4759 0.035152 ATCAGCATCCGGTTCTTGCA 60.035 50.000 18.51 0.00 38.84 4.08
4504 4762 1.098050 AGCATCCGGTTCTTGCATTC 58.902 50.000 18.51 0.00 38.84 2.67
4519 4777 1.615392 GCATTCTTGGACTTGGTTGCT 59.385 47.619 0.00 0.00 0.00 3.91
4615 4897 4.801330 TCATTAACACATGTCTCTCCGT 57.199 40.909 0.00 0.00 0.00 4.69
4672 4954 5.389642 TTTTTCTAGAATATGCACGAGCG 57.610 39.130 5.89 0.00 46.23 5.03
4673 4955 3.710326 TTCTAGAATATGCACGAGCGT 57.290 42.857 0.00 4.63 46.23 5.07
4687 4969 5.956171 CACGAGCGTGCATATCATATATT 57.044 39.130 10.25 0.00 39.39 1.28
4688 4970 5.721238 CACGAGCGTGCATATCATATATTG 58.279 41.667 10.25 0.00 39.39 1.90
4689 4971 5.516339 CACGAGCGTGCATATCATATATTGA 59.484 40.000 10.25 0.00 39.39 2.57
4690 4972 6.199719 CACGAGCGTGCATATCATATATTGAT 59.800 38.462 10.25 5.92 42.34 2.57
4691 4973 7.379529 CACGAGCGTGCATATCATATATTGATA 59.620 37.037 10.25 8.89 43.33 2.15
4712 4994 8.927675 TGATAGAAGAAGAGTAGGGATAGAAC 57.072 38.462 0.00 0.00 0.00 3.01
4713 4995 7.945664 TGATAGAAGAAGAGTAGGGATAGAACC 59.054 40.741 0.00 0.00 0.00 3.62
4721 5003 2.541177 GGGATAGAACCCTCCACCC 58.459 63.158 0.00 0.00 45.90 4.61
4722 5004 0.327191 GGGATAGAACCCTCCACCCA 60.327 60.000 0.00 0.00 45.90 4.51
4723 5005 1.591768 GGATAGAACCCTCCACCCAA 58.408 55.000 0.00 0.00 0.00 4.12
4724 5006 1.490910 GGATAGAACCCTCCACCCAAG 59.509 57.143 0.00 0.00 0.00 3.61
4725 5007 2.197465 GATAGAACCCTCCACCCAAGT 58.803 52.381 0.00 0.00 0.00 3.16
4726 5008 2.127651 TAGAACCCTCCACCCAAGTT 57.872 50.000 0.00 0.00 0.00 2.66
4727 5009 1.231963 AGAACCCTCCACCCAAGTTT 58.768 50.000 0.00 0.00 0.00 2.66
4728 5010 2.424793 AGAACCCTCCACCCAAGTTTA 58.575 47.619 0.00 0.00 0.00 2.01
4729 5011 2.107726 AGAACCCTCCACCCAAGTTTAC 59.892 50.000 0.00 0.00 0.00 2.01
4730 5012 1.525175 ACCCTCCACCCAAGTTTACA 58.475 50.000 0.00 0.00 0.00 2.41
4731 5013 1.854280 ACCCTCCACCCAAGTTTACAA 59.146 47.619 0.00 0.00 0.00 2.41
4732 5014 2.245287 ACCCTCCACCCAAGTTTACAAA 59.755 45.455 0.00 0.00 0.00 2.83
4733 5015 3.301274 CCCTCCACCCAAGTTTACAAAA 58.699 45.455 0.00 0.00 0.00 2.44
4734 5016 3.707102 CCCTCCACCCAAGTTTACAAAAA 59.293 43.478 0.00 0.00 0.00 1.94
4735 5017 4.346709 CCCTCCACCCAAGTTTACAAAAAT 59.653 41.667 0.00 0.00 0.00 1.82
4736 5018 5.510690 CCCTCCACCCAAGTTTACAAAAATC 60.511 44.000 0.00 0.00 0.00 2.17
4737 5019 5.304357 CCTCCACCCAAGTTTACAAAAATCT 59.696 40.000 0.00 0.00 0.00 2.40
4738 5020 6.155475 TCCACCCAAGTTTACAAAAATCTG 57.845 37.500 0.00 0.00 0.00 2.90
4739 5021 5.069781 TCCACCCAAGTTTACAAAAATCTGG 59.930 40.000 0.00 0.00 32.70 3.86
4740 5022 5.163353 CCACCCAAGTTTACAAAAATCTGGT 60.163 40.000 0.00 0.00 31.74 4.00
4741 5023 6.345298 CACCCAAGTTTACAAAAATCTGGTT 58.655 36.000 0.00 0.00 31.74 3.67
4742 5024 7.418025 CCACCCAAGTTTACAAAAATCTGGTTA 60.418 37.037 0.00 0.00 31.74 2.85
4743 5025 7.436970 CACCCAAGTTTACAAAAATCTGGTTAC 59.563 37.037 0.00 0.00 31.74 2.50
4744 5026 7.124448 ACCCAAGTTTACAAAAATCTGGTTACA 59.876 33.333 0.00 0.00 31.74 2.41
4745 5027 7.651704 CCCAAGTTTACAAAAATCTGGTTACAG 59.348 37.037 0.00 0.00 46.30 2.74
4758 5040 3.997021 CTGGTTACAGACATCTGAACCAC 59.003 47.826 25.73 14.04 46.53 4.16
4759 5041 3.244422 TGGTTACAGACATCTGAACCACC 60.244 47.826 25.73 19.50 46.53 4.61
4760 5042 2.993899 GTTACAGACATCTGAACCACCG 59.006 50.000 15.76 0.00 46.59 4.94
4761 5043 1.048601 ACAGACATCTGAACCACCGT 58.951 50.000 15.76 0.00 46.59 4.83
4762 5044 1.270305 ACAGACATCTGAACCACCGTG 60.270 52.381 15.76 0.00 46.59 4.94
4763 5045 1.000843 CAGACATCTGAACCACCGTGA 59.999 52.381 2.51 0.00 46.59 4.35
4764 5046 1.691976 AGACATCTGAACCACCGTGAA 59.308 47.619 0.00 0.00 0.00 3.18
4765 5047 1.798813 GACATCTGAACCACCGTGAAC 59.201 52.381 0.00 0.00 0.00 3.18
4766 5048 1.416401 ACATCTGAACCACCGTGAACT 59.584 47.619 0.00 0.00 0.00 3.01
4767 5049 2.069273 CATCTGAACCACCGTGAACTC 58.931 52.381 0.00 0.00 0.00 3.01
4768 5050 0.391597 TCTGAACCACCGTGAACTCC 59.608 55.000 0.00 0.00 0.00 3.85
4769 5051 0.105964 CTGAACCACCGTGAACTCCA 59.894 55.000 0.00 0.00 0.00 3.86
4770 5052 0.179067 TGAACCACCGTGAACTCCAC 60.179 55.000 0.00 0.00 42.30 4.02
4771 5053 0.179067 GAACCACCGTGAACTCCACA 60.179 55.000 0.00 0.00 45.98 4.17
4772 5054 0.472471 AACCACCGTGAACTCCACAT 59.528 50.000 0.00 0.00 45.98 3.21
4773 5055 0.034896 ACCACCGTGAACTCCACATC 59.965 55.000 0.00 0.00 45.98 3.06
4774 5056 0.321671 CCACCGTGAACTCCACATCT 59.678 55.000 0.00 0.00 45.98 2.90
4775 5057 1.548719 CCACCGTGAACTCCACATCTA 59.451 52.381 0.00 0.00 45.98 1.98
4776 5058 2.168521 CCACCGTGAACTCCACATCTAT 59.831 50.000 0.00 0.00 45.98 1.98
4777 5059 3.383505 CCACCGTGAACTCCACATCTATA 59.616 47.826 0.00 0.00 45.98 1.31
4778 5060 4.499865 CCACCGTGAACTCCACATCTATAG 60.500 50.000 0.00 0.00 45.98 1.31
4779 5061 3.068307 ACCGTGAACTCCACATCTATAGC 59.932 47.826 0.00 0.00 45.98 2.97
4780 5062 3.553096 CCGTGAACTCCACATCTATAGCC 60.553 52.174 0.00 0.00 45.98 3.93
4781 5063 3.643763 GTGAACTCCACATCTATAGCCG 58.356 50.000 0.00 0.00 45.03 5.52
4782 5064 3.318275 GTGAACTCCACATCTATAGCCGA 59.682 47.826 0.00 0.00 45.03 5.54
4783 5065 3.318275 TGAACTCCACATCTATAGCCGAC 59.682 47.826 0.00 0.00 0.00 4.79
4784 5066 3.231207 ACTCCACATCTATAGCCGACT 57.769 47.619 0.00 0.00 0.00 4.18
4785 5067 4.368565 ACTCCACATCTATAGCCGACTA 57.631 45.455 0.00 0.00 0.00 2.59
4786 5068 4.073549 ACTCCACATCTATAGCCGACTAC 58.926 47.826 0.00 0.00 0.00 2.73
4787 5069 4.202482 ACTCCACATCTATAGCCGACTACT 60.202 45.833 0.00 0.00 0.00 2.57
4788 5070 4.325119 TCCACATCTATAGCCGACTACTC 58.675 47.826 0.00 0.00 0.00 2.59
4789 5071 3.440872 CCACATCTATAGCCGACTACTCC 59.559 52.174 0.00 0.00 0.00 3.85
4790 5072 4.328536 CACATCTATAGCCGACTACTCCT 58.671 47.826 0.00 0.00 0.00 3.69
4791 5073 4.155099 CACATCTATAGCCGACTACTCCTG 59.845 50.000 0.00 0.00 0.00 3.86
4792 5074 4.041815 ACATCTATAGCCGACTACTCCTGA 59.958 45.833 0.00 0.00 0.00 3.86
4793 5075 4.701651 TCTATAGCCGACTACTCCTGAA 57.298 45.455 0.00 0.00 0.00 3.02
4794 5076 5.244189 TCTATAGCCGACTACTCCTGAAT 57.756 43.478 0.00 0.00 0.00 2.57
4795 5077 5.004448 TCTATAGCCGACTACTCCTGAATG 58.996 45.833 0.00 0.00 0.00 2.67
4796 5078 1.115467 AGCCGACTACTCCTGAATGG 58.885 55.000 0.00 0.00 37.10 3.16
4797 5079 0.530870 GCCGACTACTCCTGAATGGC 60.531 60.000 0.00 0.00 35.26 4.40
4798 5080 0.105039 CCGACTACTCCTGAATGGCC 59.895 60.000 0.00 0.00 35.26 5.36
4799 5081 0.105039 CGACTACTCCTGAATGGCCC 59.895 60.000 0.00 0.00 35.26 5.80
4800 5082 1.204146 GACTACTCCTGAATGGCCCA 58.796 55.000 0.00 0.00 35.26 5.36
4801 5083 0.912486 ACTACTCCTGAATGGCCCAC 59.088 55.000 0.00 0.00 35.26 4.61
4802 5084 0.181350 CTACTCCTGAATGGCCCACC 59.819 60.000 0.00 0.00 35.26 4.61
4803 5085 0.253160 TACTCCTGAATGGCCCACCT 60.253 55.000 0.00 0.00 36.63 4.00
4804 5086 0.253160 ACTCCTGAATGGCCCACCTA 60.253 55.000 0.00 0.00 36.63 3.08
4805 5087 0.471617 CTCCTGAATGGCCCACCTAG 59.528 60.000 0.00 0.00 36.63 3.02
4806 5088 1.152881 CCTGAATGGCCCACCTAGC 60.153 63.158 0.00 0.00 36.63 3.42
4807 5089 1.639635 CCTGAATGGCCCACCTAGCT 61.640 60.000 0.00 0.00 36.63 3.32
4808 5090 1.131638 CTGAATGGCCCACCTAGCTA 58.868 55.000 0.00 0.00 36.63 3.32
4809 5091 1.071385 CTGAATGGCCCACCTAGCTAG 59.929 57.143 14.20 14.20 36.63 3.42
4810 5092 1.132500 GAATGGCCCACCTAGCTAGT 58.868 55.000 19.31 5.12 36.63 2.57
4811 5093 1.490910 GAATGGCCCACCTAGCTAGTT 59.509 52.381 19.31 1.83 36.63 2.24
4812 5094 1.132500 ATGGCCCACCTAGCTAGTTC 58.868 55.000 19.31 3.67 36.63 3.01
4813 5095 0.252513 TGGCCCACCTAGCTAGTTCA 60.253 55.000 19.31 5.62 36.63 3.18
4814 5096 0.178301 GGCCCACCTAGCTAGTTCAC 59.822 60.000 19.31 4.96 0.00 3.18
4815 5097 0.178301 GCCCACCTAGCTAGTTCACC 59.822 60.000 19.31 1.57 0.00 4.02
4816 5098 1.568504 CCCACCTAGCTAGTTCACCA 58.431 55.000 19.31 0.00 0.00 4.17
4817 5099 1.906574 CCCACCTAGCTAGTTCACCAA 59.093 52.381 19.31 0.00 0.00 3.67
4818 5100 2.304761 CCCACCTAGCTAGTTCACCAAA 59.695 50.000 19.31 0.00 0.00 3.28
4819 5101 3.600388 CCACCTAGCTAGTTCACCAAAG 58.400 50.000 19.31 3.41 0.00 2.77
4820 5102 3.260884 CCACCTAGCTAGTTCACCAAAGA 59.739 47.826 19.31 0.00 0.00 2.52
4821 5103 4.262894 CCACCTAGCTAGTTCACCAAAGAA 60.263 45.833 19.31 0.00 0.00 2.52
4822 5104 5.305585 CACCTAGCTAGTTCACCAAAGAAA 58.694 41.667 19.31 0.00 0.00 2.52
4823 5105 5.409826 CACCTAGCTAGTTCACCAAAGAAAG 59.590 44.000 19.31 1.59 0.00 2.62
4824 5106 4.938226 CCTAGCTAGTTCACCAAAGAAAGG 59.062 45.833 19.31 0.00 0.00 3.11
4825 5107 4.439253 AGCTAGTTCACCAAAGAAAGGT 57.561 40.909 0.00 0.00 40.85 3.50
4826 5108 4.793201 AGCTAGTTCACCAAAGAAAGGTT 58.207 39.130 0.00 0.00 37.23 3.50
4827 5109 4.822350 AGCTAGTTCACCAAAGAAAGGTTC 59.178 41.667 0.00 0.00 37.23 3.62
4828 5110 4.319549 GCTAGTTCACCAAAGAAAGGTTCG 60.320 45.833 0.00 0.00 37.23 3.95
4829 5111 3.881220 AGTTCACCAAAGAAAGGTTCGA 58.119 40.909 0.00 0.00 37.23 3.71
4830 5112 3.877508 AGTTCACCAAAGAAAGGTTCGAG 59.122 43.478 0.00 0.00 37.23 4.04
4831 5113 3.830744 TCACCAAAGAAAGGTTCGAGA 57.169 42.857 0.00 0.00 37.23 4.04
4832 5114 4.351874 TCACCAAAGAAAGGTTCGAGAT 57.648 40.909 0.00 0.00 37.23 2.75
4833 5115 4.315803 TCACCAAAGAAAGGTTCGAGATC 58.684 43.478 0.00 0.00 37.23 2.75
4834 5116 4.040461 TCACCAAAGAAAGGTTCGAGATCT 59.960 41.667 0.00 0.00 37.23 2.75
4835 5117 4.390297 CACCAAAGAAAGGTTCGAGATCTC 59.610 45.833 13.05 13.05 37.23 2.75
4836 5118 3.935828 CCAAAGAAAGGTTCGAGATCTCC 59.064 47.826 17.13 3.51 34.02 3.71
4837 5119 4.323104 CCAAAGAAAGGTTCGAGATCTCCT 60.323 45.833 17.13 6.00 34.02 3.69
4838 5120 5.241662 CAAAGAAAGGTTCGAGATCTCCTT 58.758 41.667 17.13 11.92 41.33 3.36
4840 5122 4.826556 AGAAAGGTTCGAGATCTCCTTTG 58.173 43.478 23.84 9.36 46.16 2.77
4841 5123 4.528596 AGAAAGGTTCGAGATCTCCTTTGA 59.471 41.667 23.84 11.31 46.16 2.69
4842 5124 4.464069 AAGGTTCGAGATCTCCTTTGAG 57.536 45.455 17.13 2.00 37.01 3.02
4843 5125 3.436243 AGGTTCGAGATCTCCTTTGAGT 58.564 45.455 17.13 0.00 39.75 3.41
4844 5126 4.601084 AGGTTCGAGATCTCCTTTGAGTA 58.399 43.478 17.13 0.00 39.75 2.59
4845 5127 4.642885 AGGTTCGAGATCTCCTTTGAGTAG 59.357 45.833 17.13 0.00 39.75 2.57
4846 5128 4.399934 GGTTCGAGATCTCCTTTGAGTAGT 59.600 45.833 17.13 0.00 39.75 2.73
4847 5129 5.449451 GGTTCGAGATCTCCTTTGAGTAGTC 60.449 48.000 17.13 0.00 39.75 2.59
4848 5130 4.200874 TCGAGATCTCCTTTGAGTAGTCC 58.799 47.826 17.13 0.00 39.75 3.85
4849 5131 4.080243 TCGAGATCTCCTTTGAGTAGTCCT 60.080 45.833 17.13 0.00 39.75 3.85
4850 5132 4.036262 CGAGATCTCCTTTGAGTAGTCCTG 59.964 50.000 17.13 0.00 39.75 3.86
4851 5133 3.704061 AGATCTCCTTTGAGTAGTCCTGC 59.296 47.826 0.00 0.00 39.75 4.85
4852 5134 2.180276 TCTCCTTTGAGTAGTCCTGCC 58.820 52.381 0.00 0.00 39.75 4.85
4853 5135 0.895530 TCCTTTGAGTAGTCCTGCCG 59.104 55.000 0.00 0.00 0.00 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.696526 TAAGGACCACTCACCTGACT 57.303 50.000 0.00 0.00 36.56 3.41
39 40 1.679032 GCCACATAAGGACCACTCACC 60.679 57.143 0.00 0.00 0.00 4.02
62 63 3.334583 TGGTCTGGCATCTTCAGTTAC 57.665 47.619 0.00 0.00 34.15 2.50
127 128 6.917533 ACAACTTGCTCAAAAAGATCCATAG 58.082 36.000 0.00 0.00 0.00 2.23
128 129 6.899393 ACAACTTGCTCAAAAAGATCCATA 57.101 33.333 0.00 0.00 0.00 2.74
184 185 2.292016 CAGCGACTATCCTTCGTCAGAT 59.708 50.000 0.00 0.00 38.77 2.90
187 188 1.746470 TCAGCGACTATCCTTCGTCA 58.254 50.000 0.00 0.00 38.77 4.35
189 190 2.093106 AGTTCAGCGACTATCCTTCGT 58.907 47.619 0.00 0.00 38.77 3.85
191 192 8.819643 ATATTTTAGTTCAGCGACTATCCTTC 57.180 34.615 0.00 0.00 32.51 3.46
247 249 8.857098 TGGTACTCTCTAACGCTCATATATTTT 58.143 33.333 0.00 0.00 0.00 1.82
255 257 3.570975 TGTTTGGTACTCTCTAACGCTCA 59.429 43.478 0.00 0.00 0.00 4.26
264 266 6.235664 TCCCATTACTTTGTTTGGTACTCTC 58.764 40.000 0.00 0.00 0.00 3.20
281 283 3.054728 TCGTCTTTGGCTTCATCCCATTA 60.055 43.478 0.00 0.00 31.26 1.90
289 291 0.391130 CGGGATCGTCTTTGGCTTCA 60.391 55.000 0.00 0.00 0.00 3.02
455 478 2.317609 CGAATGATTAGCGGGCCCG 61.318 63.158 40.26 40.26 43.09 6.13
458 481 1.891919 TGGCGAATGATTAGCGGGC 60.892 57.895 4.25 0.00 0.00 6.13
479 502 1.445871 GGTCGGAATTGTTTAGCGGT 58.554 50.000 0.00 0.00 0.00 5.68
933 959 3.154710 GGAAAAGAAACCCTAGGTGGTG 58.845 50.000 8.29 0.00 39.05 4.17
934 960 3.061369 AGGAAAAGAAACCCTAGGTGGT 58.939 45.455 8.29 0.00 41.55 4.16
935 961 3.808834 AGGAAAAGAAACCCTAGGTGG 57.191 47.619 8.29 0.00 35.34 4.61
936 962 4.079970 GGAAGGAAAAGAAACCCTAGGTG 58.920 47.826 8.29 1.63 35.34 4.00
937 963 3.725267 TGGAAGGAAAAGAAACCCTAGGT 59.275 43.478 8.29 0.00 37.65 3.08
938 964 4.382386 TGGAAGGAAAAGAAACCCTAGG 57.618 45.455 0.06 0.06 0.00 3.02
939 965 5.966742 CTTGGAAGGAAAAGAAACCCTAG 57.033 43.478 0.00 0.00 0.00 3.02
953 979 1.003580 TGCTACTTGCTCCTTGGAAGG 59.996 52.381 0.00 0.00 46.56 3.46
955 981 2.185004 GTGCTACTTGCTCCTTGGAA 57.815 50.000 0.00 0.00 43.37 3.53
956 982 3.935993 GTGCTACTTGCTCCTTGGA 57.064 52.632 0.00 0.00 43.37 3.53
962 988 2.820037 GGGCGGTGCTACTTGCTC 60.820 66.667 0.00 0.00 43.37 4.26
963 989 4.760047 CGGGCGGTGCTACTTGCT 62.760 66.667 0.00 0.00 43.37 3.91
964 990 4.752879 TCGGGCGGTGCTACTTGC 62.753 66.667 0.00 0.00 43.25 4.01
965 991 1.883084 GATCGGGCGGTGCTACTTG 60.883 63.158 0.00 0.00 0.00 3.16
966 992 2.499685 GATCGGGCGGTGCTACTT 59.500 61.111 0.00 0.00 0.00 2.24
967 993 3.537874 GGATCGGGCGGTGCTACT 61.538 66.667 0.00 0.00 0.00 2.57
968 994 4.944372 CGGATCGGGCGGTGCTAC 62.944 72.222 0.00 0.00 0.00 3.58
993 1019 2.112815 GTACTTGTCCATGGGCCGC 61.113 63.158 15.27 1.75 0.00 6.53
994 1020 1.813753 CGTACTTGTCCATGGGCCG 60.814 63.158 15.27 5.64 0.00 6.13
995 1021 0.462047 CTCGTACTTGTCCATGGGCC 60.462 60.000 15.27 4.53 0.00 5.80
996 1022 0.535335 TCTCGTACTTGTCCATGGGC 59.465 55.000 10.20 10.20 0.00 5.36
997 1023 2.893637 CTTCTCGTACTTGTCCATGGG 58.106 52.381 13.02 0.00 0.00 4.00
1338 1364 9.688091 GAGATGGTAGATAGATATACCTTGACA 57.312 37.037 13.15 0.00 43.33 3.58
1477 1506 2.081462 GGATCGGTTGGTTTTGATCGT 58.919 47.619 0.00 0.00 38.45 3.73
1478 1507 1.062002 CGGATCGGTTGGTTTTGATCG 59.938 52.381 0.00 0.00 38.45 3.69
1479 1508 2.081462 ACGGATCGGTTGGTTTTGATC 58.919 47.619 0.00 0.00 37.18 2.92
1536 1565 2.407361 CACTTACGATTCACACCGTCAC 59.593 50.000 0.00 0.00 39.86 3.67
1603 1636 3.192844 TCTGATTCTTGTACGACCTGTCC 59.807 47.826 0.00 0.00 0.00 4.02
1606 1639 4.998788 TGATCTGATTCTTGTACGACCTG 58.001 43.478 0.00 0.00 0.00 4.00
1607 1640 5.411781 GTTGATCTGATTCTTGTACGACCT 58.588 41.667 0.00 0.00 0.00 3.85
1608 1641 4.265556 CGTTGATCTGATTCTTGTACGACC 59.734 45.833 0.00 0.00 0.00 4.79
1609 1642 4.259451 GCGTTGATCTGATTCTTGTACGAC 60.259 45.833 0.00 0.00 0.00 4.34
1687 1720 3.589988 GTCGTTGCAGCTATATATGCCT 58.410 45.455 5.98 0.00 41.85 4.75
1688 1721 2.673368 GGTCGTTGCAGCTATATATGCC 59.327 50.000 5.98 0.00 41.85 4.40
1699 1732 3.440173 ACATTCCTAATTGGTCGTTGCAG 59.560 43.478 0.00 0.00 37.07 4.41
1709 1742 7.087409 TGCTGACACATTACATTCCTAATTG 57.913 36.000 0.00 0.00 0.00 2.32
1724 1757 3.431415 AGGTACTGTAGATGCTGACACA 58.569 45.455 0.00 0.00 37.18 3.72
1919 1959 2.668457 CTGACTAGCGCGTGAAGATTTT 59.332 45.455 8.43 0.00 0.00 1.82
1920 1960 2.263077 CTGACTAGCGCGTGAAGATTT 58.737 47.619 8.43 0.00 0.00 2.17
1921 1961 1.202582 ACTGACTAGCGCGTGAAGATT 59.797 47.619 8.43 0.00 0.00 2.40
1922 1962 0.811915 ACTGACTAGCGCGTGAAGAT 59.188 50.000 8.43 0.00 0.00 2.40
1936 1976 1.230324 GACTGTGGCTCCAAACTGAC 58.770 55.000 0.00 0.00 0.00 3.51
1962 2002 1.276421 GTTAGAGCAGGCTTCCAGTGA 59.724 52.381 0.00 0.00 0.00 3.41
1963 2003 1.277557 AGTTAGAGCAGGCTTCCAGTG 59.722 52.381 0.00 0.00 0.00 3.66
1965 2005 2.011046 GCAGTTAGAGCAGGCTTCCAG 61.011 57.143 0.00 0.00 0.00 3.86
1966 2006 0.036010 GCAGTTAGAGCAGGCTTCCA 60.036 55.000 0.00 0.00 0.00 3.53
1969 2009 1.681166 CCATGCAGTTAGAGCAGGCTT 60.681 52.381 0.00 0.00 46.36 4.35
1975 2015 3.258971 AGAACTCCATGCAGTTAGAGC 57.741 47.619 0.93 0.00 36.71 4.09
1976 2016 6.403866 AGATAGAACTCCATGCAGTTAGAG 57.596 41.667 0.93 0.00 36.71 2.43
1977 2017 6.381133 TGAAGATAGAACTCCATGCAGTTAGA 59.619 38.462 0.93 0.00 36.71 2.10
1978 2018 6.577103 TGAAGATAGAACTCCATGCAGTTAG 58.423 40.000 0.93 0.00 36.71 2.34
1991 2031 5.344743 TGGTCAGTGGATGAAGATAGAAC 57.655 43.478 0.00 0.00 40.43 3.01
2001 2041 0.034767 AGGTGCATGGTCAGTGGATG 60.035 55.000 0.00 0.00 0.00 3.51
2008 2048 2.352422 GGCTCAGGTGCATGGTCA 59.648 61.111 0.00 0.00 34.04 4.02
2041 2118 9.890629 TCATGCAGAAGTAATCAAGTTATAACT 57.109 29.630 12.50 12.50 42.04 2.24
2099 2178 6.999950 TGCACAACTGGTATAAGAAACTCTA 58.000 36.000 0.00 0.00 0.00 2.43
2175 2254 2.184448 CAGCAACAAACACAACGGAAG 58.816 47.619 0.00 0.00 0.00 3.46
2182 2261 5.316327 TGACAATTACAGCAACAAACACA 57.684 34.783 0.00 0.00 0.00 3.72
2196 2275 6.456853 GCAATGTTGTATCGAGCTGACAATTA 60.457 38.462 0.00 3.06 35.65 1.40
2229 2309 5.072329 AGCAGGATAGCATTAACCACATAGT 59.928 40.000 0.00 0.00 36.85 2.12
2262 2345 5.213891 AGTTTTGTGGCTTTAAATCCCTG 57.786 39.130 5.65 0.00 0.00 4.45
2561 2644 8.259411 ACAAATATCAAAGCCTAATTGCAATCA 58.741 29.630 13.38 0.00 0.00 2.57
2582 2665 8.761689 ACAAGGATAAGGCATTTCATAACAAAT 58.238 29.630 0.00 0.00 0.00 2.32
2629 2712 2.039746 TGTTCTGGAGGTTGTACATGGG 59.960 50.000 0.00 0.00 0.00 4.00
2751 2839 7.701445 AGTAAATTGTGCTGCTTCATAAGATC 58.299 34.615 0.00 0.00 0.00 2.75
2867 2955 8.040716 AGCAAACGCTTTCTATAGTAAATTGT 57.959 30.769 0.00 0.00 35.79 2.71
2878 2966 6.985188 AGATTGATTAGCAAACGCTTTCTA 57.015 33.333 0.00 0.00 40.48 2.10
2989 3077 5.008980 TGTGATCAAGTGTGGCAATTCATA 58.991 37.500 0.00 0.00 0.00 2.15
3067 3285 6.114187 TGGTCTGTTCAGTTCAGATAACAT 57.886 37.500 0.00 0.00 42.63 2.71
3081 3299 5.182001 ACTTGAAGCACAATATGGTCTGTTC 59.818 40.000 0.00 0.00 38.37 3.18
3086 3304 5.886960 AGAACTTGAAGCACAATATGGTC 57.113 39.130 0.00 0.00 38.37 4.02
3273 3491 2.762887 TGTTGTTGGTGCTCATGGAAAA 59.237 40.909 0.00 0.00 0.00 2.29
3277 3495 4.082081 ACATATTGTTGTTGGTGCTCATGG 60.082 41.667 0.00 0.00 0.00 3.66
3359 3577 5.542779 ACAAGAACAGTTCACTAGGATCAC 58.457 41.667 15.85 0.00 0.00 3.06
3373 3591 6.656693 AGGAATAATGGACAGAACAAGAACAG 59.343 38.462 0.00 0.00 0.00 3.16
3687 3905 0.229753 CAGACATACGAAATCGGCGC 59.770 55.000 0.00 0.00 44.95 6.53
3692 3910 4.806247 CCTCAAGGACAGACATACGAAATC 59.194 45.833 0.00 0.00 37.39 2.17
3941 4159 9.323985 GAACTGAGTAGCTGATAAATCAAGATT 57.676 33.333 0.00 0.00 36.18 2.40
3967 4185 3.270027 TCGATTGCCCACTCAATAACAG 58.730 45.455 0.00 0.00 36.85 3.16
4012 4230 2.483714 CCGACCACCAGAATCCATACAG 60.484 54.545 0.00 0.00 0.00 2.74
4052 4270 7.515514 ACCAGATAGAAACATCAGGGAATATCT 59.484 37.037 0.00 0.00 36.24 1.98
4240 4474 1.301479 GGGTCTTCCGCAACTTCGT 60.301 57.895 0.00 0.00 33.83 3.85
4243 4477 1.172812 GCAAGGGTCTTCCGCAACTT 61.173 55.000 0.00 0.00 41.52 2.66
4244 4478 1.600916 GCAAGGGTCTTCCGCAACT 60.601 57.895 0.00 0.00 41.52 3.16
4263 4497 1.234821 TTGGAACGAGCGAGCAAAAT 58.765 45.000 0.00 0.00 0.00 1.82
4264 4498 1.018148 TTTGGAACGAGCGAGCAAAA 58.982 45.000 0.00 0.00 0.00 2.44
4267 4501 0.531974 AAGTTTGGAACGAGCGAGCA 60.532 50.000 0.00 0.00 36.23 4.26
4276 4510 5.760253 TGATGTCTCTTGAGAAGTTTGGAAC 59.240 40.000 1.51 0.00 0.00 3.62
4284 4518 7.413219 GCTTCTTTGATGATGTCTCTTGAGAAG 60.413 40.741 1.51 0.00 39.36 2.85
4287 4521 5.220434 CGCTTCTTTGATGATGTCTCTTGAG 60.220 44.000 0.00 0.00 0.00 3.02
4288 4522 4.628766 CGCTTCTTTGATGATGTCTCTTGA 59.371 41.667 0.00 0.00 0.00 3.02
4296 4530 3.875727 AGGATGTCGCTTCTTTGATGATG 59.124 43.478 0.00 0.00 0.00 3.07
4297 4531 4.148128 AGGATGTCGCTTCTTTGATGAT 57.852 40.909 0.00 0.00 0.00 2.45
4298 4532 3.616956 AGGATGTCGCTTCTTTGATGA 57.383 42.857 0.00 0.00 0.00 2.92
4299 4533 3.438087 ACAAGGATGTCGCTTCTTTGATG 59.562 43.478 17.33 0.00 33.41 3.07
4300 4534 3.679389 ACAAGGATGTCGCTTCTTTGAT 58.321 40.909 17.33 6.09 33.41 2.57
4301 4535 3.126001 ACAAGGATGTCGCTTCTTTGA 57.874 42.857 17.33 0.00 33.41 2.69
4302 4536 3.125316 GGTACAAGGATGTCGCTTCTTTG 59.875 47.826 12.35 12.35 41.05 2.77
4329 4568 5.011635 GGACCAACACCATCCTTACAAAATT 59.988 40.000 0.00 0.00 0.00 1.82
4343 4582 1.816074 TTGCGAATAGGACCAACACC 58.184 50.000 0.00 0.00 0.00 4.16
4366 4605 2.698274 GTGGACCAACACCATCCTTTTT 59.302 45.455 0.00 0.00 39.69 1.94
4367 4606 2.316108 GTGGACCAACACCATCCTTTT 58.684 47.619 0.00 0.00 39.69 2.27
4368 4607 1.216678 TGTGGACCAACACCATCCTTT 59.783 47.619 0.00 0.00 40.62 3.11
4407 4646 2.093890 TGCCTAGTGATTGTGCCAATG 58.906 47.619 5.31 0.00 0.00 2.82
4455 4694 4.688021 GACTAGAGTGTGGAATGACATCC 58.312 47.826 0.00 0.00 40.10 3.51
4459 4698 3.502920 CACGACTAGAGTGTGGAATGAC 58.497 50.000 12.65 0.00 35.08 3.06
4492 4750 3.305608 CCAAGTCCAAGAATGCAAGAACC 60.306 47.826 0.00 0.00 0.00 3.62
4496 4754 3.645884 CAACCAAGTCCAAGAATGCAAG 58.354 45.455 0.00 0.00 0.00 4.01
4501 4759 4.985538 TCTTAGCAACCAAGTCCAAGAAT 58.014 39.130 0.00 0.00 0.00 2.40
4504 4762 3.077359 CCTCTTAGCAACCAAGTCCAAG 58.923 50.000 0.00 0.00 0.00 3.61
4650 4932 4.868171 ACGCTCGTGCATATTCTAGAAAAA 59.132 37.500 9.71 1.10 39.64 1.94
4651 4933 4.267690 CACGCTCGTGCATATTCTAGAAAA 59.732 41.667 9.71 0.00 39.39 2.29
4652 4934 3.796717 CACGCTCGTGCATATTCTAGAAA 59.203 43.478 9.71 0.00 39.39 2.52
4653 4935 3.372060 CACGCTCGTGCATATTCTAGAA 58.628 45.455 7.82 7.82 39.39 2.10
4654 4936 3.000082 CACGCTCGTGCATATTCTAGA 58.000 47.619 9.55 0.00 39.39 2.43
4665 4947 5.516339 TCAATATATGATATGCACGCTCGTG 59.484 40.000 17.09 17.09 40.06 4.35
4666 4948 5.650543 TCAATATATGATATGCACGCTCGT 58.349 37.500 0.00 0.00 31.50 4.18
4686 4968 9.357161 GTTCTATCCCTACTCTTCTTCTATCAA 57.643 37.037 0.00 0.00 0.00 2.57
4687 4969 7.945664 GGTTCTATCCCTACTCTTCTTCTATCA 59.054 40.741 0.00 0.00 0.00 2.15
4688 4970 7.395206 GGGTTCTATCCCTACTCTTCTTCTATC 59.605 44.444 0.00 0.00 43.85 2.08
4689 4971 7.243091 GGGTTCTATCCCTACTCTTCTTCTAT 58.757 42.308 0.00 0.00 43.85 1.98
4690 4972 6.612741 GGGTTCTATCCCTACTCTTCTTCTA 58.387 44.000 0.00 0.00 43.85 2.10
4691 4973 5.460416 GGGTTCTATCCCTACTCTTCTTCT 58.540 45.833 0.00 0.00 43.85 2.85
4692 4974 5.794726 GGGTTCTATCCCTACTCTTCTTC 57.205 47.826 0.00 0.00 43.85 2.87
4704 4986 1.490910 CTTGGGTGGAGGGTTCTATCC 59.509 57.143 0.00 0.00 35.71 2.59
4705 4987 2.197465 ACTTGGGTGGAGGGTTCTATC 58.803 52.381 0.00 0.00 0.00 2.08
4706 4988 2.361085 ACTTGGGTGGAGGGTTCTAT 57.639 50.000 0.00 0.00 0.00 1.98
4707 4989 2.127651 AACTTGGGTGGAGGGTTCTA 57.872 50.000 0.00 0.00 0.00 2.10
4708 4990 1.231963 AAACTTGGGTGGAGGGTTCT 58.768 50.000 0.00 0.00 0.00 3.01
4709 4991 2.158579 TGTAAACTTGGGTGGAGGGTTC 60.159 50.000 0.00 0.00 0.00 3.62
4710 4992 1.854280 TGTAAACTTGGGTGGAGGGTT 59.146 47.619 0.00 0.00 0.00 4.11
4711 4993 1.525175 TGTAAACTTGGGTGGAGGGT 58.475 50.000 0.00 0.00 0.00 4.34
4712 4994 2.668144 TTGTAAACTTGGGTGGAGGG 57.332 50.000 0.00 0.00 0.00 4.30
4713 4995 5.304357 AGATTTTTGTAAACTTGGGTGGAGG 59.696 40.000 0.00 0.00 0.00 4.30
4714 4996 6.215845 CAGATTTTTGTAAACTTGGGTGGAG 58.784 40.000 0.00 0.00 0.00 3.86
4715 4997 5.069781 CCAGATTTTTGTAAACTTGGGTGGA 59.930 40.000 0.00 0.00 31.36 4.02
4716 4998 5.163353 ACCAGATTTTTGTAAACTTGGGTGG 60.163 40.000 0.00 0.00 35.74 4.61
4717 4999 5.912892 ACCAGATTTTTGTAAACTTGGGTG 58.087 37.500 0.00 0.00 35.74 4.61
4718 5000 6.553953 AACCAGATTTTTGTAAACTTGGGT 57.446 33.333 0.00 0.00 35.74 4.51
4719 5001 7.493367 TGTAACCAGATTTTTGTAAACTTGGG 58.507 34.615 0.00 0.00 35.74 4.12
4720 5002 8.410141 TCTGTAACCAGATTTTTGTAAACTTGG 58.590 33.333 0.00 0.00 42.80 3.61
4735 5017 3.901222 TGGTTCAGATGTCTGTAACCAGA 59.099 43.478 25.85 14.94 46.53 3.86
4736 5018 4.271696 TGGTTCAGATGTCTGTAACCAG 57.728 45.455 25.85 0.00 46.53 4.00
4738 5020 3.335579 GGTGGTTCAGATGTCTGTAACC 58.664 50.000 23.11 23.11 44.74 2.85
4739 5021 2.993899 CGGTGGTTCAGATGTCTGTAAC 59.006 50.000 9.65 11.50 44.12 2.50
4740 5022 2.631062 ACGGTGGTTCAGATGTCTGTAA 59.369 45.455 9.65 1.42 44.12 2.41
4741 5023 2.029380 CACGGTGGTTCAGATGTCTGTA 60.029 50.000 9.65 0.00 44.12 2.74
4742 5024 1.048601 ACGGTGGTTCAGATGTCTGT 58.951 50.000 9.65 0.00 44.12 3.41
4743 5025 1.000843 TCACGGTGGTTCAGATGTCTG 59.999 52.381 8.50 3.61 45.08 3.51
4744 5026 1.338107 TCACGGTGGTTCAGATGTCT 58.662 50.000 8.50 0.00 0.00 3.41
4745 5027 1.798813 GTTCACGGTGGTTCAGATGTC 59.201 52.381 8.50 0.00 0.00 3.06
4746 5028 1.416401 AGTTCACGGTGGTTCAGATGT 59.584 47.619 8.50 0.00 0.00 3.06
4747 5029 2.069273 GAGTTCACGGTGGTTCAGATG 58.931 52.381 8.50 0.00 0.00 2.90
4748 5030 1.002087 GGAGTTCACGGTGGTTCAGAT 59.998 52.381 8.50 0.00 0.00 2.90
4749 5031 0.391597 GGAGTTCACGGTGGTTCAGA 59.608 55.000 8.50 0.00 0.00 3.27
4750 5032 0.105964 TGGAGTTCACGGTGGTTCAG 59.894 55.000 8.50 0.00 0.00 3.02
4751 5033 0.179067 GTGGAGTTCACGGTGGTTCA 60.179 55.000 8.50 0.00 36.56 3.18
4752 5034 2.613390 GTGGAGTTCACGGTGGTTC 58.387 57.895 8.50 3.88 36.56 3.62
4753 5035 4.870190 GTGGAGTTCACGGTGGTT 57.130 55.556 8.50 0.00 36.56 3.67
4760 5042 3.318275 TCGGCTATAGATGTGGAGTTCAC 59.682 47.826 3.21 0.00 46.23 3.18
4761 5043 3.318275 GTCGGCTATAGATGTGGAGTTCA 59.682 47.826 3.21 0.00 0.00 3.18
4762 5044 3.570550 AGTCGGCTATAGATGTGGAGTTC 59.429 47.826 3.21 0.00 0.00 3.01
4763 5045 3.567397 AGTCGGCTATAGATGTGGAGTT 58.433 45.455 3.21 0.00 0.00 3.01
4764 5046 3.231207 AGTCGGCTATAGATGTGGAGT 57.769 47.619 3.21 0.00 0.00 3.85
4765 5047 4.328536 AGTAGTCGGCTATAGATGTGGAG 58.671 47.826 0.00 0.00 0.00 3.86
4766 5048 4.325119 GAGTAGTCGGCTATAGATGTGGA 58.675 47.826 0.00 0.00 0.00 4.02
4767 5049 3.440872 GGAGTAGTCGGCTATAGATGTGG 59.559 52.174 0.00 0.00 0.00 4.17
4768 5050 4.155099 CAGGAGTAGTCGGCTATAGATGTG 59.845 50.000 0.00 0.00 0.00 3.21
4769 5051 4.041815 TCAGGAGTAGTCGGCTATAGATGT 59.958 45.833 0.00 0.00 0.00 3.06
4770 5052 4.580868 TCAGGAGTAGTCGGCTATAGATG 58.419 47.826 0.00 0.00 0.00 2.90
4771 5053 4.912317 TCAGGAGTAGTCGGCTATAGAT 57.088 45.455 0.00 0.00 0.00 1.98
4772 5054 4.701651 TTCAGGAGTAGTCGGCTATAGA 57.298 45.455 0.00 0.00 0.00 1.98
4773 5055 4.156922 CCATTCAGGAGTAGTCGGCTATAG 59.843 50.000 0.00 0.00 41.22 1.31
4774 5056 4.079970 CCATTCAGGAGTAGTCGGCTATA 58.920 47.826 0.00 0.00 41.22 1.31
4775 5057 2.894126 CCATTCAGGAGTAGTCGGCTAT 59.106 50.000 0.00 0.00 41.22 2.97
4776 5058 2.307768 CCATTCAGGAGTAGTCGGCTA 58.692 52.381 0.00 0.00 41.22 3.93
4777 5059 1.115467 CCATTCAGGAGTAGTCGGCT 58.885 55.000 0.00 0.00 41.22 5.52
4778 5060 0.530870 GCCATTCAGGAGTAGTCGGC 60.531 60.000 0.00 0.00 41.22 5.54
4779 5061 0.105039 GGCCATTCAGGAGTAGTCGG 59.895 60.000 0.00 0.00 41.22 4.79
4780 5062 0.105039 GGGCCATTCAGGAGTAGTCG 59.895 60.000 4.39 0.00 41.22 4.18
4781 5063 1.134371 GTGGGCCATTCAGGAGTAGTC 60.134 57.143 10.70 0.00 41.22 2.59
4782 5064 0.912486 GTGGGCCATTCAGGAGTAGT 59.088 55.000 10.70 0.00 41.22 2.73
4783 5065 0.181350 GGTGGGCCATTCAGGAGTAG 59.819 60.000 10.70 0.00 41.22 2.57
4784 5066 0.253160 AGGTGGGCCATTCAGGAGTA 60.253 55.000 10.70 0.00 41.22 2.59
4785 5067 0.253160 TAGGTGGGCCATTCAGGAGT 60.253 55.000 10.70 0.00 41.22 3.85
4786 5068 0.471617 CTAGGTGGGCCATTCAGGAG 59.528 60.000 10.70 0.00 41.22 3.69
4787 5069 1.635817 GCTAGGTGGGCCATTCAGGA 61.636 60.000 10.70 0.00 41.22 3.86
4788 5070 1.152881 GCTAGGTGGGCCATTCAGG 60.153 63.158 10.70 0.49 41.84 3.86
4789 5071 1.071385 CTAGCTAGGTGGGCCATTCAG 59.929 57.143 10.70 8.22 37.19 3.02
4790 5072 1.131638 CTAGCTAGGTGGGCCATTCA 58.868 55.000 10.70 0.00 37.19 2.57
4791 5073 1.132500 ACTAGCTAGGTGGGCCATTC 58.868 55.000 24.35 5.50 37.19 2.67
4792 5074 1.490910 GAACTAGCTAGGTGGGCCATT 59.509 52.381 24.35 7.16 37.19 3.16
4793 5075 1.132500 GAACTAGCTAGGTGGGCCAT 58.868 55.000 24.35 0.00 37.19 4.40
4794 5076 0.252513 TGAACTAGCTAGGTGGGCCA 60.253 55.000 24.35 0.00 37.19 5.36
4795 5077 0.178301 GTGAACTAGCTAGGTGGGCC 59.822 60.000 24.35 6.97 0.00 5.80
4796 5078 0.178301 GGTGAACTAGCTAGGTGGGC 59.822 60.000 24.35 7.34 0.00 5.36
4797 5079 1.568504 TGGTGAACTAGCTAGGTGGG 58.431 55.000 24.35 0.27 0.00 4.61
4798 5080 3.260884 TCTTTGGTGAACTAGCTAGGTGG 59.739 47.826 24.35 3.84 0.00 4.61
4799 5081 4.537135 TCTTTGGTGAACTAGCTAGGTG 57.463 45.455 24.35 4.75 0.00 4.00
4800 5082 5.513267 CCTTTCTTTGGTGAACTAGCTAGGT 60.513 44.000 24.35 19.20 0.00 3.08
4801 5083 4.938226 CCTTTCTTTGGTGAACTAGCTAGG 59.062 45.833 24.35 7.13 0.00 3.02
4802 5084 5.552178 ACCTTTCTTTGGTGAACTAGCTAG 58.448 41.667 19.44 19.44 36.30 3.42
4803 5085 5.562298 ACCTTTCTTTGGTGAACTAGCTA 57.438 39.130 0.00 0.00 36.30 3.32
4804 5086 4.439253 ACCTTTCTTTGGTGAACTAGCT 57.561 40.909 0.00 0.00 36.30 3.32
4805 5087 4.319549 CGAACCTTTCTTTGGTGAACTAGC 60.320 45.833 0.00 0.00 37.93 3.42
4806 5088 5.054477 TCGAACCTTTCTTTGGTGAACTAG 58.946 41.667 0.00 0.00 37.93 2.57
4807 5089 5.026038 TCGAACCTTTCTTTGGTGAACTA 57.974 39.130 0.00 0.00 37.93 2.24
4808 5090 3.877508 CTCGAACCTTTCTTTGGTGAACT 59.122 43.478 0.00 0.00 37.93 3.01
4809 5091 3.875134 TCTCGAACCTTTCTTTGGTGAAC 59.125 43.478 0.00 0.00 37.93 3.18
4810 5092 4.145365 TCTCGAACCTTTCTTTGGTGAA 57.855 40.909 0.00 0.00 37.93 3.18
4811 5093 3.830744 TCTCGAACCTTTCTTTGGTGA 57.169 42.857 0.00 0.00 37.93 4.02
4812 5094 4.319177 AGATCTCGAACCTTTCTTTGGTG 58.681 43.478 0.00 0.00 37.93 4.17
4813 5095 4.563786 GGAGATCTCGAACCTTTCTTTGGT 60.564 45.833 16.46 0.00 39.91 3.67
4814 5096 3.935828 GGAGATCTCGAACCTTTCTTTGG 59.064 47.826 16.46 0.00 0.00 3.28
4815 5097 4.826556 AGGAGATCTCGAACCTTTCTTTG 58.173 43.478 16.46 0.00 0.00 2.77
4816 5098 5.491323 AAGGAGATCTCGAACCTTTCTTT 57.509 39.130 16.46 0.00 39.32 2.52
4817 5099 5.012148 TCAAAGGAGATCTCGAACCTTTCTT 59.988 40.000 18.66 10.68 46.59 2.52
4818 5100 4.528596 TCAAAGGAGATCTCGAACCTTTCT 59.471 41.667 18.66 5.80 46.59 2.52
4819 5101 4.822026 TCAAAGGAGATCTCGAACCTTTC 58.178 43.478 18.66 3.80 46.59 2.62
4821 5103 3.835395 ACTCAAAGGAGATCTCGAACCTT 59.165 43.478 16.46 11.65 44.26 3.50
4822 5104 3.436243 ACTCAAAGGAGATCTCGAACCT 58.564 45.455 16.46 5.76 44.26 3.50
4823 5105 3.878160 ACTCAAAGGAGATCTCGAACC 57.122 47.619 16.46 3.28 44.26 3.62
4824 5106 5.449451 GGACTACTCAAAGGAGATCTCGAAC 60.449 48.000 16.46 3.05 44.26 3.95
4825 5107 4.641094 GGACTACTCAAAGGAGATCTCGAA 59.359 45.833 16.46 0.00 44.26 3.71
4826 5108 4.080243 AGGACTACTCAAAGGAGATCTCGA 60.080 45.833 16.46 7.20 44.26 4.04
4827 5109 4.036262 CAGGACTACTCAAAGGAGATCTCG 59.964 50.000 16.46 4.19 44.26 4.04
4828 5110 4.202111 GCAGGACTACTCAAAGGAGATCTC 60.202 50.000 14.75 14.75 44.26 2.75
4829 5111 3.704061 GCAGGACTACTCAAAGGAGATCT 59.296 47.826 0.00 0.00 44.26 2.75
4830 5112 3.181470 GGCAGGACTACTCAAAGGAGATC 60.181 52.174 0.00 0.00 44.26 2.75
4831 5113 2.769095 GGCAGGACTACTCAAAGGAGAT 59.231 50.000 0.00 0.00 44.26 2.75
4832 5114 2.180276 GGCAGGACTACTCAAAGGAGA 58.820 52.381 0.00 0.00 44.26 3.71
4833 5115 1.134965 CGGCAGGACTACTCAAAGGAG 60.135 57.143 0.00 0.00 46.96 3.69
4834 5116 0.895530 CGGCAGGACTACTCAAAGGA 59.104 55.000 0.00 0.00 0.00 3.36
4835 5117 3.442996 CGGCAGGACTACTCAAAGG 57.557 57.895 0.00 0.00 0.00 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.