Multiple sequence alignment - TraesCS5D01G145900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G145900 chr5D 100.000 3890 0 0 1 3890 232600657 232596768 0.000000e+00 7184
1 TraesCS5D01G145900 chr5D 81.679 524 59 13 3089 3603 472807280 472806785 6.050000e-108 401
2 TraesCS5D01G145900 chr5D 82.188 393 44 11 1768 2151 112926426 112926801 8.110000e-82 315
3 TraesCS5D01G145900 chr5B 94.327 3085 113 26 862 3890 272239585 272242663 0.000000e+00 4671
4 TraesCS5D01G145900 chr5B 88.814 447 36 7 412 853 272231770 272232207 1.590000e-148 536
5 TraesCS5D01G145900 chr5B 77.030 431 70 18 294 714 203344079 203343668 1.820000e-53 220
6 TraesCS5D01G145900 chr5A 92.587 1983 72 20 1941 3890 322678049 322679989 0.000000e+00 2778
7 TraesCS5D01G145900 chr5A 91.089 1212 60 23 743 1951 322676857 322678023 0.000000e+00 1596
8 TraesCS5D01G145900 chr5A 90.955 199 10 3 563 759 322676651 322676843 1.070000e-65 261
9 TraesCS5D01G145900 chr5A 92.486 173 13 0 2795 2967 580742598 580742770 8.350000e-62 248
10 TraesCS5D01G145900 chr7B 87.755 539 51 9 2756 3292 727119806 727119281 1.990000e-172 616
11 TraesCS5D01G145900 chr7B 80.994 342 54 7 379 717 161631275 161631608 1.070000e-65 261
12 TraesCS5D01G145900 chr7B 91.892 185 14 1 1 184 655584530 655584714 1.390000e-64 257
13 TraesCS5D01G145900 chr3D 88.989 445 47 2 2161 2604 277750974 277750531 2.040000e-152 549
14 TraesCS5D01G145900 chr3D 83.072 573 75 12 1768 2328 255458586 255458024 5.800000e-138 501
15 TraesCS5D01G145900 chr3D 90.476 189 17 1 1 188 604407184 604407372 8.350000e-62 248
16 TraesCS5D01G145900 chr1B 83.595 573 73 12 1768 2328 120491067 120490504 5.760000e-143 518
17 TraesCS5D01G145900 chr4A 82.957 575 74 14 1768 2328 657090370 657090934 7.510000e-137 497
18 TraesCS5D01G145900 chr4A 94.180 189 10 1 1 188 709198868 709199056 1.770000e-73 287
19 TraesCS5D01G145900 chr4A 80.250 400 61 11 326 715 167468831 167468440 6.360000e-73 285
20 TraesCS5D01G145900 chr7A 82.897 573 75 13 1768 2328 115633963 115634524 9.710000e-136 494
21 TraesCS5D01G145900 chr7A 81.934 393 45 14 1768 2151 32696442 32696067 3.770000e-80 309
22 TraesCS5D01G145900 chr6B 83.613 476 59 11 1768 2233 618893203 618892737 2.780000e-116 429
23 TraesCS5D01G145900 chr2B 82.298 531 51 15 3097 3617 170835154 170835651 1.670000e-113 420
24 TraesCS5D01G145900 chr2B 94.149 188 11 0 1 188 156316365 156316552 1.770000e-73 287
25 TraesCS5D01G145900 chr2B 94.149 188 11 0 1 188 715025168 715024981 1.770000e-73 287
26 TraesCS5D01G145900 chr6A 81.934 393 45 11 1768 2151 518392637 518392262 3.770000e-80 309
27 TraesCS5D01G145900 chr6A 86.268 284 31 4 2327 2602 22184908 22184625 6.320000e-78 302
28 TraesCS5D01G145900 chr6A 83.224 304 40 6 379 679 579837027 579837322 6.410000e-68 268
29 TraesCS5D01G145900 chr6A 88.312 154 16 2 1637 1789 518392819 518392667 2.390000e-42 183
30 TraesCS5D01G145900 chr6D 80.235 425 62 14 294 708 462427418 462427006 2.270000e-77 300
31 TraesCS5D01G145900 chr1A 79.146 398 67 10 326 715 175173194 175172805 1.070000e-65 261
32 TraesCS5D01G145900 chr1A 86.264 182 23 2 3 183 45850029 45849849 3.070000e-46 196
33 TraesCS5D01G145900 chr3A 93.064 173 12 0 2795 2967 705237685 705237857 1.790000e-63 254
34 TraesCS5D01G145900 chr3A 87.425 167 14 5 3441 3603 729155443 729155280 6.640000e-43 185
35 TraesCS5D01G145900 chr3B 90.909 187 16 1 3 188 708490550 708490736 2.320000e-62 250
36 TraesCS5D01G145900 chr3B 86.747 166 16 4 3441 3603 806244253 806244091 3.090000e-41 180
37 TraesCS5D01G145900 chr1D 77.262 431 69 18 294 714 209569146 209569557 3.910000e-55 226
38 TraesCS5D01G145900 chr1D 88.623 167 17 2 31 196 366472314 366472479 6.590000e-48 202
39 TraesCS5D01G145900 chr7D 77.660 376 68 9 326 694 587173801 587174167 8.470000e-52 215
40 TraesCS5D01G145900 chr2A 87.766 188 17 4 1 188 487345874 487346055 8.470000e-52 215
41 TraesCS5D01G145900 chrUn 78.006 341 53 12 379 714 479822035 479821712 1.100000e-45 195


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G145900 chr5D 232596768 232600657 3889 True 7184 7184 100.000000 1 3890 1 chr5D.!!$R1 3889
1 TraesCS5D01G145900 chr5B 272239585 272242663 3078 False 4671 4671 94.327000 862 3890 1 chr5B.!!$F2 3028
2 TraesCS5D01G145900 chr5A 322676651 322679989 3338 False 1545 2778 91.543667 563 3890 3 chr5A.!!$F2 3327
3 TraesCS5D01G145900 chr7B 727119281 727119806 525 True 616 616 87.755000 2756 3292 1 chr7B.!!$R1 536
4 TraesCS5D01G145900 chr3D 255458024 255458586 562 True 501 501 83.072000 1768 2328 1 chr3D.!!$R1 560
5 TraesCS5D01G145900 chr1B 120490504 120491067 563 True 518 518 83.595000 1768 2328 1 chr1B.!!$R1 560
6 TraesCS5D01G145900 chr4A 657090370 657090934 564 False 497 497 82.957000 1768 2328 1 chr4A.!!$F1 560
7 TraesCS5D01G145900 chr7A 115633963 115634524 561 False 494 494 82.897000 1768 2328 1 chr7A.!!$F1 560
8 TraesCS5D01G145900 chr6A 518392262 518392819 557 True 246 309 85.123000 1637 2151 2 chr6A.!!$R2 514

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
182 183 0.039074 CTGAAGGCGCGGTATAGGAG 60.039 60.0 8.83 0.0 0.00 3.69 F
226 227 0.172578 CACCTCGACCTGACGCATAA 59.827 55.0 0.00 0.0 0.00 1.90 F
228 229 0.249073 CCTCGACCTGACGCATAAGG 60.249 60.0 0.00 0.0 39.65 2.69 F
251 252 0.393132 GGCCCAACCAGCTAAGAGTC 60.393 60.0 0.00 0.0 38.86 3.36 F
887 928 0.437295 CGGTAGAAAAACCACTCGCG 59.563 55.0 0.00 0.0 39.71 5.87 F
1444 1485 0.535102 ACTGACCCACTCGCCAAAAG 60.535 55.0 0.00 0.0 0.00 2.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1528 1572 0.957395 CGCCACACCTTGCAGAGATT 60.957 55.000 0.00 0.00 0.00 2.40 R
1544 1589 1.134640 ACCAAAACCCAAAGAAACGCC 60.135 47.619 0.00 0.00 0.00 5.68 R
1802 1898 1.135527 CGGTGGCTATTTGAGGTACGA 59.864 52.381 0.00 0.00 0.00 3.43 R
1820 1916 4.357918 AGATATCAGGAACCCATTTCGG 57.642 45.455 5.32 0.00 34.67 4.30 R
2685 2837 1.942677 TGAAAGTTTCGCGGAACTCA 58.057 45.000 31.85 23.29 38.86 3.41 R
2910 3063 3.255642 GCTTGAAAAACCATGTAGCAGGA 59.744 43.478 0.00 0.00 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.563224 TGAGCTGGTGCAGTGGCT 61.563 61.111 6.90 6.90 42.74 4.75
18 19 2.216331 TGAGCTGGTGCAGTGGCTA 61.216 57.895 0.00 0.00 42.74 3.93
19 20 1.449246 GAGCTGGTGCAGTGGCTAG 60.449 63.158 0.00 0.00 42.74 3.42
20 21 3.130160 GCTGGTGCAGTGGCTAGC 61.130 66.667 6.04 6.04 41.91 3.42
21 22 2.437359 CTGGTGCAGTGGCTAGCC 60.437 66.667 27.71 27.71 41.91 3.93
22 23 2.930019 TGGTGCAGTGGCTAGCCT 60.930 61.111 33.07 12.84 41.91 4.58
23 24 2.124942 GGTGCAGTGGCTAGCCTC 60.125 66.667 33.07 29.04 41.91 4.70
24 25 2.664081 GGTGCAGTGGCTAGCCTCT 61.664 63.158 33.07 30.76 41.91 3.69
25 26 1.153469 GTGCAGTGGCTAGCCTCTC 60.153 63.158 30.83 24.37 41.91 3.20
26 27 2.362369 TGCAGTGGCTAGCCTCTCC 61.362 63.158 30.83 24.61 41.91 3.71
27 28 2.811101 CAGTGGCTAGCCTCTCCG 59.189 66.667 30.83 19.24 37.79 4.63
28 29 2.055042 CAGTGGCTAGCCTCTCCGT 61.055 63.158 30.83 11.86 37.79 4.69
29 30 2.055042 AGTGGCTAGCCTCTCCGTG 61.055 63.158 33.07 0.00 35.24 4.94
30 31 2.037367 TGGCTAGCCTCTCCGTGT 59.963 61.111 33.07 0.00 36.94 4.49
31 32 2.351244 TGGCTAGCCTCTCCGTGTG 61.351 63.158 33.07 0.00 36.94 3.82
32 33 2.496817 GCTAGCCTCTCCGTGTGG 59.503 66.667 2.29 0.00 0.00 4.17
33 34 2.052690 GCTAGCCTCTCCGTGTGGA 61.053 63.158 2.29 0.00 43.88 4.02
34 35 1.605058 GCTAGCCTCTCCGTGTGGAA 61.605 60.000 2.29 0.00 45.87 3.53
35 36 0.457851 CTAGCCTCTCCGTGTGGAAG 59.542 60.000 0.00 0.00 45.87 3.46
36 37 1.605058 TAGCCTCTCCGTGTGGAAGC 61.605 60.000 0.00 0.00 45.87 3.86
37 38 2.125912 CCTCTCCGTGTGGAAGCG 60.126 66.667 0.00 0.00 45.87 4.68
38 39 2.811317 CTCTCCGTGTGGAAGCGC 60.811 66.667 0.00 0.00 45.87 5.92
39 40 4.717629 TCTCCGTGTGGAAGCGCG 62.718 66.667 0.00 0.00 45.87 6.86
40 41 4.717629 CTCCGTGTGGAAGCGCGA 62.718 66.667 12.10 0.00 45.87 5.87
41 42 4.717629 TCCGTGTGGAAGCGCGAG 62.718 66.667 12.10 0.00 42.85 5.03
44 45 3.112709 GTGTGGAAGCGCGAGGTC 61.113 66.667 12.10 2.36 43.76 3.85
45 46 4.717629 TGTGGAAGCGCGAGGTCG 62.718 66.667 12.10 0.00 43.76 4.79
50 51 3.986006 AAGCGCGAGGTCGGTTGA 61.986 61.111 12.10 0.00 46.53 3.18
51 52 3.296709 AAGCGCGAGGTCGGTTGAT 62.297 57.895 12.10 0.00 46.53 2.57
52 53 3.255379 GCGCGAGGTCGGTTGATC 61.255 66.667 12.10 0.00 40.23 2.92
53 54 2.949678 CGCGAGGTCGGTTGATCG 60.950 66.667 0.00 0.00 40.23 3.69
54 55 2.488355 GCGAGGTCGGTTGATCGA 59.512 61.111 0.89 0.00 40.23 3.59
55 56 1.153901 GCGAGGTCGGTTGATCGAA 60.154 57.895 0.89 0.00 41.05 3.71
56 57 0.527817 GCGAGGTCGGTTGATCGAAT 60.528 55.000 0.89 0.00 41.05 3.34
57 58 1.478137 CGAGGTCGGTTGATCGAATC 58.522 55.000 0.00 0.00 41.05 2.52
58 59 1.854227 GAGGTCGGTTGATCGAATCC 58.146 55.000 0.00 0.00 41.05 3.01
59 60 0.464452 AGGTCGGTTGATCGAATCCC 59.536 55.000 0.00 0.00 41.05 3.85
60 61 0.177141 GGTCGGTTGATCGAATCCCA 59.823 55.000 0.00 0.00 41.05 4.37
61 62 1.571919 GTCGGTTGATCGAATCCCAG 58.428 55.000 0.00 0.00 41.05 4.45
62 63 1.134788 GTCGGTTGATCGAATCCCAGT 60.135 52.381 0.00 0.00 41.05 4.00
63 64 1.136305 TCGGTTGATCGAATCCCAGTC 59.864 52.381 0.00 0.00 36.12 3.51
64 65 1.571919 GGTTGATCGAATCCCAGTCG 58.428 55.000 0.00 0.00 39.88 4.18
65 66 1.571919 GTTGATCGAATCCCAGTCGG 58.428 55.000 0.00 0.00 39.01 4.79
78 79 3.420839 CCAGTCGGGATGTATTTTTGC 57.579 47.619 0.00 0.00 40.01 3.68
79 80 2.099098 CCAGTCGGGATGTATTTTTGCC 59.901 50.000 0.00 0.00 40.01 4.52
80 81 2.014128 AGTCGGGATGTATTTTTGCCG 58.986 47.619 0.00 0.00 46.79 5.69
81 82 1.064952 GTCGGGATGTATTTTTGCCGG 59.935 52.381 0.00 0.00 45.64 6.13
82 83 1.099689 CGGGATGTATTTTTGCCGGT 58.900 50.000 1.90 0.00 42.39 5.28
83 84 1.064952 CGGGATGTATTTTTGCCGGTC 59.935 52.381 1.90 0.00 42.39 4.79
84 85 2.096248 GGGATGTATTTTTGCCGGTCA 58.904 47.619 1.90 0.00 0.00 4.02
85 86 2.693074 GGGATGTATTTTTGCCGGTCAT 59.307 45.455 1.90 0.00 0.00 3.06
86 87 3.132111 GGGATGTATTTTTGCCGGTCATT 59.868 43.478 1.90 0.00 0.00 2.57
87 88 4.382577 GGGATGTATTTTTGCCGGTCATTT 60.383 41.667 1.90 0.00 0.00 2.32
88 89 5.175127 GGATGTATTTTTGCCGGTCATTTT 58.825 37.500 1.90 0.00 0.00 1.82
89 90 5.641636 GGATGTATTTTTGCCGGTCATTTTT 59.358 36.000 1.90 0.00 0.00 1.94
90 91 6.183360 GGATGTATTTTTGCCGGTCATTTTTC 60.183 38.462 1.90 0.00 0.00 2.29
91 92 4.681942 TGTATTTTTGCCGGTCATTTTTCG 59.318 37.500 1.90 0.00 0.00 3.46
92 93 1.492720 TTTTGCCGGTCATTTTTCGC 58.507 45.000 1.90 0.00 0.00 4.70
93 94 0.661780 TTTGCCGGTCATTTTTCGCG 60.662 50.000 1.90 0.00 0.00 5.87
94 95 1.787057 TTGCCGGTCATTTTTCGCGT 61.787 50.000 5.77 0.00 0.00 6.01
95 96 1.081708 GCCGGTCATTTTTCGCGTT 60.082 52.632 5.77 0.00 0.00 4.84
96 97 1.334288 GCCGGTCATTTTTCGCGTTG 61.334 55.000 5.77 0.00 0.00 4.10
97 98 0.727793 CCGGTCATTTTTCGCGTTGG 60.728 55.000 5.77 0.00 0.00 3.77
98 99 0.040781 CGGTCATTTTTCGCGTTGGT 60.041 50.000 5.77 0.00 0.00 3.67
99 100 1.404477 GGTCATTTTTCGCGTTGGTG 58.596 50.000 5.77 0.27 0.00 4.17
100 101 1.404477 GTCATTTTTCGCGTTGGTGG 58.596 50.000 5.77 0.00 0.00 4.61
101 102 1.025812 TCATTTTTCGCGTTGGTGGT 58.974 45.000 5.77 0.00 0.00 4.16
102 103 1.405821 TCATTTTTCGCGTTGGTGGTT 59.594 42.857 5.77 0.00 0.00 3.67
103 104 1.520590 CATTTTTCGCGTTGGTGGTTG 59.479 47.619 5.77 0.00 0.00 3.77
104 105 0.802607 TTTTTCGCGTTGGTGGTTGC 60.803 50.000 5.77 0.00 0.00 4.17
109 110 3.722295 CGTTGGTGGTTGCGCGAT 61.722 61.111 12.10 0.00 0.00 4.58
110 111 2.175811 GTTGGTGGTTGCGCGATC 59.824 61.111 12.10 0.00 0.00 3.69
111 112 3.418913 TTGGTGGTTGCGCGATCG 61.419 61.111 12.10 11.69 39.07 3.69
112 113 4.673298 TGGTGGTTGCGCGATCGT 62.673 61.111 17.81 0.00 38.14 3.73
113 114 4.147322 GGTGGTTGCGCGATCGTG 62.147 66.667 23.89 23.89 38.14 4.35
114 115 4.147322 GTGGTTGCGCGATCGTGG 62.147 66.667 28.23 16.17 38.14 4.94
155 156 3.121030 CGGGCGCCACTTCTCTTG 61.121 66.667 30.85 1.52 0.00 3.02
156 157 3.435186 GGGCGCCACTTCTCTTGC 61.435 66.667 30.85 1.84 0.00 4.01
158 159 3.793144 GCGCCACTTCTCTTGCGG 61.793 66.667 0.00 0.00 46.59 5.69
159 160 3.121030 CGCCACTTCTCTTGCGGG 61.121 66.667 0.00 0.00 43.08 6.13
160 161 2.747855 GCCACTTCTCTTGCGGGG 60.748 66.667 0.00 0.00 0.00 5.73
161 162 2.747855 CCACTTCTCTTGCGGGGC 60.748 66.667 0.00 0.00 0.00 5.80
162 163 3.121030 CACTTCTCTTGCGGGGCG 61.121 66.667 0.00 0.00 0.00 6.13
179 180 3.938112 GCTGAAGGCGCGGTATAG 58.062 61.111 8.83 0.00 0.00 1.31
180 181 1.664965 GCTGAAGGCGCGGTATAGG 60.665 63.158 8.83 0.00 0.00 2.57
181 182 2.038690 CTGAAGGCGCGGTATAGGA 58.961 57.895 8.83 0.00 0.00 2.94
182 183 0.039074 CTGAAGGCGCGGTATAGGAG 60.039 60.000 8.83 0.00 0.00 3.69
183 184 1.373121 GAAGGCGCGGTATAGGAGC 60.373 63.158 8.83 0.00 0.00 4.70
185 186 4.374645 GGCGCGGTATAGGAGCCC 62.375 72.222 8.83 0.00 43.55 5.19
186 187 4.374645 GCGCGGTATAGGAGCCCC 62.375 72.222 8.83 0.00 0.00 5.80
187 188 3.692406 CGCGGTATAGGAGCCCCC 61.692 72.222 0.00 0.00 0.00 5.40
189 190 2.284276 GCGGTATAGGAGCCCCCTC 61.284 68.421 0.00 0.00 43.31 4.30
197 198 2.370633 GAGCCCCCTCCTCTTCCT 59.629 66.667 0.00 0.00 31.68 3.36
198 199 2.041928 AGCCCCCTCCTCTTCCTG 59.958 66.667 0.00 0.00 0.00 3.86
199 200 3.803162 GCCCCCTCCTCTTCCTGC 61.803 72.222 0.00 0.00 0.00 4.85
200 201 3.474570 CCCCCTCCTCTTCCTGCG 61.475 72.222 0.00 0.00 0.00 5.18
201 202 2.685380 CCCCTCCTCTTCCTGCGT 60.685 66.667 0.00 0.00 0.00 5.24
202 203 2.726351 CCCCTCCTCTTCCTGCGTC 61.726 68.421 0.00 0.00 0.00 5.19
203 204 2.492090 CCTCCTCTTCCTGCGTCG 59.508 66.667 0.00 0.00 0.00 5.12
204 205 2.492090 CTCCTCTTCCTGCGTCGG 59.508 66.667 0.00 0.00 0.00 4.79
205 206 3.708220 CTCCTCTTCCTGCGTCGGC 62.708 68.421 0.00 0.00 40.52 5.54
206 207 3.764466 CCTCTTCCTGCGTCGGCT 61.764 66.667 0.00 0.00 40.82 5.52
207 208 2.202676 CTCTTCCTGCGTCGGCTC 60.203 66.667 0.00 0.00 40.82 4.70
208 209 2.989253 TCTTCCTGCGTCGGCTCA 60.989 61.111 0.00 0.00 40.82 4.26
209 210 2.811317 CTTCCTGCGTCGGCTCAC 60.811 66.667 0.00 0.00 40.82 3.51
210 211 4.373116 TTCCTGCGTCGGCTCACC 62.373 66.667 0.00 0.00 40.82 4.02
212 213 4.803426 CCTGCGTCGGCTCACCTC 62.803 72.222 0.00 0.00 40.82 3.85
217 218 3.063084 GTCGGCTCACCTCGACCT 61.063 66.667 4.75 0.00 46.79 3.85
218 219 3.062466 TCGGCTCACCTCGACCTG 61.062 66.667 0.00 0.00 0.00 4.00
219 220 3.062466 CGGCTCACCTCGACCTGA 61.062 66.667 0.00 0.00 0.00 3.86
220 221 2.574399 GGCTCACCTCGACCTGAC 59.426 66.667 0.00 0.00 0.00 3.51
221 222 2.179517 GCTCACCTCGACCTGACG 59.820 66.667 0.00 0.00 0.00 4.35
222 223 2.179517 CTCACCTCGACCTGACGC 59.820 66.667 0.00 0.00 0.00 5.19
223 224 2.596338 TCACCTCGACCTGACGCA 60.596 61.111 0.00 0.00 0.00 5.24
224 225 1.938657 CTCACCTCGACCTGACGCAT 61.939 60.000 0.00 0.00 0.00 4.73
225 226 0.678684 TCACCTCGACCTGACGCATA 60.679 55.000 0.00 0.00 0.00 3.14
226 227 0.172578 CACCTCGACCTGACGCATAA 59.827 55.000 0.00 0.00 0.00 1.90
227 228 0.456221 ACCTCGACCTGACGCATAAG 59.544 55.000 0.00 0.00 0.00 1.73
228 229 0.249073 CCTCGACCTGACGCATAAGG 60.249 60.000 0.00 0.00 39.65 2.69
229 230 0.872021 CTCGACCTGACGCATAAGGC 60.872 60.000 0.00 0.00 37.03 4.35
230 231 1.141881 CGACCTGACGCATAAGGCT 59.858 57.895 0.00 0.00 41.67 4.58
231 232 0.872021 CGACCTGACGCATAAGGCTC 60.872 60.000 0.00 0.00 41.67 4.70
232 233 0.872021 GACCTGACGCATAAGGCTCG 60.872 60.000 0.00 0.00 41.67 5.03
233 234 1.592669 CCTGACGCATAAGGCTCGG 60.593 63.158 0.00 0.00 41.67 4.63
234 235 2.202878 TGACGCATAAGGCTCGGC 60.203 61.111 0.00 0.00 41.67 5.54
245 246 4.096003 GCTCGGCCCAACCAGCTA 62.096 66.667 0.00 0.00 38.68 3.32
246 247 2.668632 CTCGGCCCAACCAGCTAA 59.331 61.111 0.00 0.00 39.03 3.09
247 248 1.450312 CTCGGCCCAACCAGCTAAG 60.450 63.158 0.00 0.00 39.03 2.18
248 249 1.899437 CTCGGCCCAACCAGCTAAGA 61.899 60.000 0.00 0.00 39.03 2.10
249 250 1.450312 CGGCCCAACCAGCTAAGAG 60.450 63.158 0.00 0.00 39.03 2.85
250 251 1.685820 GGCCCAACCAGCTAAGAGT 59.314 57.895 0.00 0.00 38.86 3.24
251 252 0.393132 GGCCCAACCAGCTAAGAGTC 60.393 60.000 0.00 0.00 38.86 3.36
252 253 0.615850 GCCCAACCAGCTAAGAGTCT 59.384 55.000 0.00 0.00 0.00 3.24
253 254 1.406205 GCCCAACCAGCTAAGAGTCTC 60.406 57.143 0.00 0.00 0.00 3.36
254 255 2.183679 CCCAACCAGCTAAGAGTCTCT 58.816 52.381 0.00 0.00 0.00 3.10
255 256 2.167487 CCCAACCAGCTAAGAGTCTCTC 59.833 54.545 1.96 0.00 0.00 3.20
256 257 2.159310 CCAACCAGCTAAGAGTCTCTCG 60.159 54.545 1.96 0.00 35.36 4.04
257 258 2.490115 CAACCAGCTAAGAGTCTCTCGT 59.510 50.000 1.96 0.00 35.36 4.18
258 259 2.088423 ACCAGCTAAGAGTCTCTCGTG 58.912 52.381 1.96 0.00 35.36 4.35
259 260 2.088423 CCAGCTAAGAGTCTCTCGTGT 58.912 52.381 1.96 0.00 35.36 4.49
260 261 3.271729 CCAGCTAAGAGTCTCTCGTGTA 58.728 50.000 1.96 0.00 35.36 2.90
261 262 3.880490 CCAGCTAAGAGTCTCTCGTGTAT 59.120 47.826 1.96 0.00 35.36 2.29
262 263 4.024387 CCAGCTAAGAGTCTCTCGTGTATC 60.024 50.000 1.96 0.00 35.36 2.24
263 264 4.814234 CAGCTAAGAGTCTCTCGTGTATCT 59.186 45.833 1.96 0.00 35.36 1.98
264 265 5.295787 CAGCTAAGAGTCTCTCGTGTATCTT 59.704 44.000 1.96 0.00 35.36 2.40
265 266 6.480651 CAGCTAAGAGTCTCTCGTGTATCTTA 59.519 42.308 1.96 0.00 35.36 2.10
266 267 7.011576 CAGCTAAGAGTCTCTCGTGTATCTTAA 59.988 40.741 1.96 0.00 35.36 1.85
267 268 7.717875 AGCTAAGAGTCTCTCGTGTATCTTAAT 59.282 37.037 1.96 0.00 35.36 1.40
268 269 8.991026 GCTAAGAGTCTCTCGTGTATCTTAATA 58.009 37.037 1.96 0.00 35.36 0.98
294 295 8.977267 TTTCATTGTGTATCATCATGTATCCA 57.023 30.769 0.00 0.00 0.00 3.41
295 296 8.977267 TTCATTGTGTATCATCATGTATCCAA 57.023 30.769 0.00 0.00 0.00 3.53
296 297 8.977267 TCATTGTGTATCATCATGTATCCAAA 57.023 30.769 0.00 0.00 0.00 3.28
297 298 9.406113 TCATTGTGTATCATCATGTATCCAAAA 57.594 29.630 0.00 0.00 0.00 2.44
301 302 9.187996 TGTGTATCATCATGTATCCAAAAATGT 57.812 29.630 0.00 0.00 0.00 2.71
318 319 7.501515 CAAAAATGTTATTTTGGAGAACGAGC 58.498 34.615 4.93 0.00 43.36 5.03
319 320 6.575162 AAATGTTATTTTGGAGAACGAGCT 57.425 33.333 0.00 0.00 0.00 4.09
320 321 5.803020 ATGTTATTTTGGAGAACGAGCTC 57.197 39.130 2.73 2.73 0.00 4.09
327 328 3.712020 GAGAACGAGCTCCAGTGAG 57.288 57.895 8.47 0.00 41.84 3.51
344 345 9.793259 CTCCAGTGAGCCCTATATTTTAAATAA 57.207 33.333 1.28 0.00 0.00 1.40
432 433 6.702972 TTACACATGTGCAAATTGTAATGC 57.297 33.333 25.68 0.00 42.86 3.56
433 434 4.885413 ACACATGTGCAAATTGTAATGCT 58.115 34.783 25.68 0.00 42.97 3.79
434 435 4.687018 ACACATGTGCAAATTGTAATGCTG 59.313 37.500 25.68 0.00 42.97 4.41
435 436 4.924462 CACATGTGCAAATTGTAATGCTGA 59.076 37.500 13.94 0.00 42.97 4.26
436 437 5.405873 CACATGTGCAAATTGTAATGCTGAA 59.594 36.000 13.94 0.00 42.97 3.02
437 438 5.990386 ACATGTGCAAATTGTAATGCTGAAA 59.010 32.000 0.00 0.00 42.97 2.69
438 439 5.903764 TGTGCAAATTGTAATGCTGAAAC 57.096 34.783 0.00 0.00 42.97 2.78
439 440 5.354767 TGTGCAAATTGTAATGCTGAAACA 58.645 33.333 0.00 0.00 42.97 2.83
440 441 5.814188 TGTGCAAATTGTAATGCTGAAACAA 59.186 32.000 0.00 0.00 42.97 2.83
441 442 6.314648 TGTGCAAATTGTAATGCTGAAACAAA 59.685 30.769 0.00 0.00 42.97 2.83
442 443 7.012138 TGTGCAAATTGTAATGCTGAAACAAAT 59.988 29.630 0.00 0.00 42.97 2.32
443 444 7.321746 GTGCAAATTGTAATGCTGAAACAAATG 59.678 33.333 0.00 0.00 42.97 2.32
444 445 7.226128 TGCAAATTGTAATGCTGAAACAAATGA 59.774 29.630 1.83 0.00 42.97 2.57
445 446 7.531534 GCAAATTGTAATGCTGAAACAAATGAC 59.468 33.333 0.00 0.00 39.46 3.06
446 447 7.656707 AATTGTAATGCTGAAACAAATGACC 57.343 32.000 0.00 0.00 36.75 4.02
447 448 5.781210 TGTAATGCTGAAACAAATGACCA 57.219 34.783 0.00 0.00 0.00 4.02
448 449 6.343716 TGTAATGCTGAAACAAATGACCAT 57.656 33.333 0.00 0.00 0.00 3.55
449 450 6.157904 TGTAATGCTGAAACAAATGACCATG 58.842 36.000 0.00 0.00 0.00 3.66
450 451 3.029320 TGCTGAAACAAATGACCATGC 57.971 42.857 0.00 0.00 0.00 4.06
451 452 1.987770 GCTGAAACAAATGACCATGCG 59.012 47.619 0.00 0.00 0.00 4.73
452 453 2.351641 GCTGAAACAAATGACCATGCGA 60.352 45.455 0.00 0.00 0.00 5.10
453 454 3.495193 CTGAAACAAATGACCATGCGAG 58.505 45.455 0.00 0.00 0.00 5.03
454 455 2.884012 TGAAACAAATGACCATGCGAGT 59.116 40.909 0.00 0.00 0.00 4.18
455 456 3.317711 TGAAACAAATGACCATGCGAGTT 59.682 39.130 0.00 0.00 0.00 3.01
456 457 4.517075 TGAAACAAATGACCATGCGAGTTA 59.483 37.500 0.00 0.00 0.00 2.24
457 458 4.419522 AACAAATGACCATGCGAGTTAC 57.580 40.909 0.00 0.00 0.00 2.50
458 459 3.407698 ACAAATGACCATGCGAGTTACA 58.592 40.909 0.00 0.00 0.00 2.41
459 460 3.818210 ACAAATGACCATGCGAGTTACAA 59.182 39.130 0.00 0.00 0.00 2.41
460 461 4.458989 ACAAATGACCATGCGAGTTACAAT 59.541 37.500 0.00 0.00 0.00 2.71
461 462 5.048083 ACAAATGACCATGCGAGTTACAATT 60.048 36.000 0.00 0.00 0.00 2.32
462 463 5.643379 AATGACCATGCGAGTTACAATTT 57.357 34.783 0.00 0.00 0.00 1.82
463 464 5.643379 ATGACCATGCGAGTTACAATTTT 57.357 34.783 0.00 0.00 0.00 1.82
464 465 5.446143 TGACCATGCGAGTTACAATTTTT 57.554 34.783 0.00 0.00 0.00 1.94
496 497 8.870160 AAATCGTGATTTTGAAAAGATGAACA 57.130 26.923 2.04 0.00 37.74 3.18
497 498 8.870160 AATCGTGATTTTGAAAAGATGAACAA 57.130 26.923 0.00 0.00 0.00 2.83
498 499 9.480053 AATCGTGATTTTGAAAAGATGAACAAT 57.520 25.926 0.00 0.00 0.00 2.71
499 500 8.284557 TCGTGATTTTGAAAAGATGAACAATG 57.715 30.769 0.00 0.00 0.00 2.82
500 501 7.005380 CGTGATTTTGAAAAGATGAACAATGC 58.995 34.615 0.00 0.00 0.00 3.56
501 502 7.306690 CGTGATTTTGAAAAGATGAACAATGCA 60.307 33.333 0.00 0.00 0.00 3.96
502 503 8.500773 GTGATTTTGAAAAGATGAACAATGCAT 58.499 29.630 0.00 0.00 0.00 3.96
503 504 8.499967 TGATTTTGAAAAGATGAACAATGCATG 58.500 29.630 0.00 0.00 0.00 4.06
504 505 7.789273 TTTTGAAAAGATGAACAATGCATGT 57.211 28.000 0.00 0.00 46.82 3.21
505 506 8.883954 TTTTGAAAAGATGAACAATGCATGTA 57.116 26.923 0.00 0.00 42.99 2.29
506 507 9.491675 TTTTGAAAAGATGAACAATGCATGTAT 57.508 25.926 0.00 0.00 42.99 2.29
507 508 9.491675 TTTGAAAAGATGAACAATGCATGTATT 57.508 25.926 0.00 2.84 42.99 1.89
513 514 9.740239 AAGATGAACAATGCATGTATTATTCAC 57.260 29.630 25.92 19.95 42.99 3.18
514 515 9.128404 AGATGAACAATGCATGTATTATTCACT 57.872 29.630 25.92 21.32 42.99 3.41
534 535 8.737168 TTCACTATTAGGAAATCACCATCTTG 57.263 34.615 0.00 0.00 0.00 3.02
535 536 7.861629 TCACTATTAGGAAATCACCATCTTGT 58.138 34.615 0.00 0.00 0.00 3.16
536 537 7.987458 TCACTATTAGGAAATCACCATCTTGTC 59.013 37.037 0.00 0.00 0.00 3.18
537 538 7.770433 CACTATTAGGAAATCACCATCTTGTCA 59.230 37.037 0.00 0.00 0.00 3.58
538 539 8.497745 ACTATTAGGAAATCACCATCTTGTCAT 58.502 33.333 0.00 0.00 0.00 3.06
539 540 9.347240 CTATTAGGAAATCACCATCTTGTCATT 57.653 33.333 0.00 0.00 0.00 2.57
540 541 8.599624 ATTAGGAAATCACCATCTTGTCATTT 57.400 30.769 0.00 0.00 0.00 2.32
541 542 6.923199 AGGAAATCACCATCTTGTCATTTT 57.077 33.333 0.00 0.00 0.00 1.82
542 543 7.307131 AGGAAATCACCATCTTGTCATTTTT 57.693 32.000 0.00 0.00 0.00 1.94
693 696 6.913873 TTAAATAAGGTCGTCTAATGCACC 57.086 37.500 0.00 0.00 0.00 5.01
729 732 1.810755 ACTCTCGTCGTGTATCAGCAA 59.189 47.619 0.00 0.00 0.00 3.91
737 740 4.490959 CGTCGTGTATCAGCAAACTTGATC 60.491 45.833 0.00 0.00 36.68 2.92
770 803 4.021894 TGCATTATTGTTGTTGGTACCCAC 60.022 41.667 10.07 9.59 30.78 4.61
841 882 5.508200 ACTAAACATTTTGAAGCGAACCA 57.492 34.783 0.00 0.00 0.00 3.67
842 883 5.278604 ACTAAACATTTTGAAGCGAACCAC 58.721 37.500 0.00 0.00 0.00 4.16
843 884 4.385358 AAACATTTTGAAGCGAACCACT 57.615 36.364 0.00 0.00 0.00 4.00
844 885 3.354089 ACATTTTGAAGCGAACCACTG 57.646 42.857 0.00 0.00 0.00 3.66
845 886 2.948979 ACATTTTGAAGCGAACCACTGA 59.051 40.909 0.00 0.00 0.00 3.41
846 887 3.569701 ACATTTTGAAGCGAACCACTGAT 59.430 39.130 0.00 0.00 0.00 2.90
847 888 4.759693 ACATTTTGAAGCGAACCACTGATA 59.240 37.500 0.00 0.00 0.00 2.15
848 889 5.240623 ACATTTTGAAGCGAACCACTGATAA 59.759 36.000 0.00 0.00 0.00 1.75
849 890 5.957842 TTTTGAAGCGAACCACTGATAAT 57.042 34.783 0.00 0.00 0.00 1.28
850 891 4.944962 TTGAAGCGAACCACTGATAATG 57.055 40.909 0.00 0.00 0.00 1.90
851 892 3.270027 TGAAGCGAACCACTGATAATGG 58.730 45.455 0.00 0.00 43.43 3.16
852 893 3.055458 TGAAGCGAACCACTGATAATGGA 60.055 43.478 0.00 0.00 39.87 3.41
853 894 3.845781 AGCGAACCACTGATAATGGAT 57.154 42.857 0.00 0.00 39.87 3.41
854 895 3.733337 AGCGAACCACTGATAATGGATC 58.267 45.455 0.00 0.00 39.87 3.36
855 896 2.808543 GCGAACCACTGATAATGGATCC 59.191 50.000 4.20 4.20 39.87 3.36
856 897 3.059884 CGAACCACTGATAATGGATCCG 58.940 50.000 7.39 0.00 39.87 4.18
857 898 3.403038 GAACCACTGATAATGGATCCGG 58.597 50.000 7.39 0.00 39.87 5.14
858 899 2.689658 ACCACTGATAATGGATCCGGA 58.310 47.619 6.61 6.61 39.87 5.14
859 900 3.251484 ACCACTGATAATGGATCCGGAT 58.749 45.455 19.21 19.21 39.87 4.18
860 901 3.652869 ACCACTGATAATGGATCCGGATT 59.347 43.478 20.22 5.75 39.87 3.01
886 927 1.458445 GACGGTAGAAAAACCACTCGC 59.542 52.381 0.00 0.00 39.71 5.03
887 928 0.437295 CGGTAGAAAAACCACTCGCG 59.563 55.000 0.00 0.00 39.71 5.87
1045 1086 4.431131 AATGGGCAGCGGTGGAGG 62.431 66.667 17.54 0.00 0.00 4.30
1327 1368 2.483013 CCTGCTTGATGAAATGCATGGG 60.483 50.000 0.00 0.00 37.34 4.00
1335 1376 0.751643 GAAATGCATGGGCGGGTAGT 60.752 55.000 0.00 0.00 45.35 2.73
1359 1400 8.242053 AGTGCTTTTCTTGTTAGATCATCAATG 58.758 33.333 0.00 0.00 0.00 2.82
1387 1428 4.516698 AGCTGGATCTTACATTTTATGCCG 59.483 41.667 0.00 0.00 0.00 5.69
1390 1431 4.578516 TGGATCTTACATTTTATGCCGTGG 59.421 41.667 0.00 0.00 0.00 4.94
1409 1450 5.036737 CGTGGTTTGGATGAAATTGCTATC 58.963 41.667 0.00 0.00 0.00 2.08
1444 1485 0.535102 ACTGACCCACTCGCCAAAAG 60.535 55.000 0.00 0.00 0.00 2.27
1448 1489 0.537371 ACCCACTCGCCAAAAGGAAG 60.537 55.000 0.00 0.00 0.00 3.46
1499 1540 8.750515 TGGATGCTCATCATACATTTCTTAAA 57.249 30.769 11.49 0.00 41.02 1.52
1500 1541 8.843262 TGGATGCTCATCATACATTTCTTAAAG 58.157 33.333 11.49 0.00 41.02 1.85
1501 1542 9.060347 GGATGCTCATCATACATTTCTTAAAGA 57.940 33.333 11.49 0.00 39.54 2.52
1544 1589 4.199432 AGTCTAATCTCTGCAAGGTGTG 57.801 45.455 0.00 0.00 0.00 3.82
1546 1591 2.012673 CTAATCTCTGCAAGGTGTGGC 58.987 52.381 0.00 0.00 0.00 5.01
1580 1625 7.671819 TGGGTTTTGGTGTCTGATTTTATCATA 59.328 33.333 0.00 0.00 38.85 2.15
1613 1658 1.736032 GCGCTAGATTTCGTGGTCAGT 60.736 52.381 0.00 0.00 0.00 3.41
1685 1730 2.551071 GGAAGATTATGGAGGGAAGGCG 60.551 54.545 0.00 0.00 0.00 5.52
1802 1898 7.279981 GCTTTTGTTGAGGTAAATTTCTGGTTT 59.720 33.333 0.00 0.00 0.00 3.27
1820 1916 3.373130 GGTTTCGTACCTCAAATAGCCAC 59.627 47.826 2.79 0.00 44.10 5.01
1951 2085 4.272991 CAGCTCTGAATTCTGTATTCCTGC 59.727 45.833 7.05 6.32 41.68 4.85
1953 2087 4.272991 GCTCTGAATTCTGTATTCCTGCTG 59.727 45.833 7.05 0.00 41.68 4.41
1956 2090 7.129457 TCTGAATTCTGTATTCCTGCTGTAT 57.871 36.000 7.05 0.00 41.68 2.29
1990 2124 7.176515 TCAATACTGTGCATATGTTTCCTTTGT 59.823 33.333 4.29 0.00 0.00 2.83
2531 2676 2.171448 TCAGGGCTGAGCTTAGGATTTC 59.829 50.000 7.72 0.00 34.14 2.17
2685 2837 5.070847 ACTGAAGGATGGCAAGTTTGAAAAT 59.929 36.000 0.00 0.00 0.00 1.82
2910 3063 2.782341 AGATTATGCTGCTTCCCCTTCT 59.218 45.455 0.00 0.00 0.00 2.85
3001 3156 5.395768 CCCTAATAGTTGGTCTCTGGTTCAG 60.396 48.000 0.00 0.00 0.00 3.02
3133 3290 4.974888 GGTTCCGTTTTACGCATTTGTTTA 59.025 37.500 0.00 0.00 40.91 2.01
3458 3621 1.997606 GCAAATGCACAGCTGGAATTC 59.002 47.619 19.93 0.00 41.59 2.17
3631 3821 4.326826 AGAAGATGCTCAATGACCGAAAA 58.673 39.130 0.00 0.00 0.00 2.29
3652 3842 1.595794 CACACCCGTTGACTTACACAC 59.404 52.381 0.00 0.00 0.00 3.82
3831 4023 8.233190 GTCAAATAAAATGACAGAAGACTGAGG 58.767 37.037 0.00 0.00 46.03 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.176314 CTAGCCACTGCACCAGCTCA 62.176 60.000 3.03 0.00 42.74 4.26
1 2 1.449246 CTAGCCACTGCACCAGCTC 60.449 63.158 3.03 0.00 42.74 4.09
2 3 2.667418 CTAGCCACTGCACCAGCT 59.333 61.111 5.10 5.10 42.74 4.24
3 4 3.130160 GCTAGCCACTGCACCAGC 61.130 66.667 2.29 0.00 41.13 4.85
4 5 2.437359 GGCTAGCCACTGCACCAG 60.437 66.667 29.33 0.00 41.13 4.00
5 6 2.930019 AGGCTAGCCACTGCACCA 60.930 61.111 34.70 0.00 41.13 4.17
6 7 2.124942 GAGGCTAGCCACTGCACC 60.125 66.667 34.70 10.97 41.13 5.01
7 8 1.153469 GAGAGGCTAGCCACTGCAC 60.153 63.158 34.68 18.64 41.13 4.57
8 9 2.362369 GGAGAGGCTAGCCACTGCA 61.362 63.158 36.11 0.00 42.66 4.41
9 10 2.503546 GGAGAGGCTAGCCACTGC 59.496 66.667 34.68 32.61 37.16 4.40
10 11 2.055042 ACGGAGAGGCTAGCCACTG 61.055 63.158 34.68 28.18 37.16 3.66
11 12 2.055042 CACGGAGAGGCTAGCCACT 61.055 63.158 34.70 32.77 39.69 4.00
12 13 2.352032 ACACGGAGAGGCTAGCCAC 61.352 63.158 34.70 28.55 38.92 5.01
13 14 2.037367 ACACGGAGAGGCTAGCCA 59.963 61.111 34.70 0.00 38.92 4.75
14 15 2.496817 CACACGGAGAGGCTAGCC 59.503 66.667 27.19 27.19 0.00 3.93
15 16 1.605058 TTCCACACGGAGAGGCTAGC 61.605 60.000 6.04 6.04 44.10 3.42
16 17 0.457851 CTTCCACACGGAGAGGCTAG 59.542 60.000 0.00 0.00 44.10 3.42
17 18 1.605058 GCTTCCACACGGAGAGGCTA 61.605 60.000 0.00 0.00 44.10 3.93
18 19 2.948720 GCTTCCACACGGAGAGGCT 61.949 63.158 0.00 0.00 44.10 4.58
19 20 2.435059 GCTTCCACACGGAGAGGC 60.435 66.667 0.00 0.00 44.10 4.70
20 21 2.125912 CGCTTCCACACGGAGAGG 60.126 66.667 0.00 0.00 44.10 3.69
21 22 2.811317 GCGCTTCCACACGGAGAG 60.811 66.667 0.00 0.00 44.10 3.20
22 23 4.717629 CGCGCTTCCACACGGAGA 62.718 66.667 5.56 0.00 44.10 3.71
23 24 4.717629 TCGCGCTTCCACACGGAG 62.718 66.667 5.56 0.00 44.10 4.63
24 25 4.717629 CTCGCGCTTCCACACGGA 62.718 66.667 5.56 0.00 40.60 4.69
27 28 3.112709 GACCTCGCGCTTCCACAC 61.113 66.667 5.56 0.00 0.00 3.82
28 29 4.717629 CGACCTCGCGCTTCCACA 62.718 66.667 5.56 0.00 0.00 4.17
31 32 4.736896 AACCGACCTCGCGCTTCC 62.737 66.667 5.56 0.00 38.18 3.46
32 33 3.479269 CAACCGACCTCGCGCTTC 61.479 66.667 5.56 0.00 38.18 3.86
33 34 3.296709 ATCAACCGACCTCGCGCTT 62.297 57.895 5.56 0.00 38.18 4.68
34 35 3.701604 GATCAACCGACCTCGCGCT 62.702 63.158 5.56 0.00 38.18 5.92
35 36 3.255379 GATCAACCGACCTCGCGC 61.255 66.667 0.00 0.00 38.18 6.86
36 37 2.860690 TTCGATCAACCGACCTCGCG 62.861 60.000 0.00 0.00 38.39 5.87
37 38 0.527817 ATTCGATCAACCGACCTCGC 60.528 55.000 0.00 0.00 38.39 5.03
38 39 1.478137 GATTCGATCAACCGACCTCG 58.522 55.000 0.00 0.00 38.39 4.63
39 40 1.538419 GGGATTCGATCAACCGACCTC 60.538 57.143 0.00 0.00 38.39 3.85
40 41 0.464452 GGGATTCGATCAACCGACCT 59.536 55.000 0.00 0.00 38.39 3.85
41 42 0.177141 TGGGATTCGATCAACCGACC 59.823 55.000 0.00 0.00 38.39 4.79
42 43 1.134788 ACTGGGATTCGATCAACCGAC 60.135 52.381 0.00 0.00 38.39 4.79
43 44 1.136305 GACTGGGATTCGATCAACCGA 59.864 52.381 0.00 0.00 36.70 4.69
44 45 1.571919 GACTGGGATTCGATCAACCG 58.428 55.000 0.00 0.00 0.00 4.44
45 46 1.571919 CGACTGGGATTCGATCAACC 58.428 55.000 0.00 0.00 38.85 3.77
46 47 1.571919 CCGACTGGGATTCGATCAAC 58.428 55.000 0.00 0.00 38.85 3.18
58 59 2.099098 GGCAAAAATACATCCCGACTGG 59.901 50.000 0.00 0.00 0.00 4.00
59 60 2.223249 CGGCAAAAATACATCCCGACTG 60.223 50.000 0.00 0.00 38.04 3.51
60 61 2.014128 CGGCAAAAATACATCCCGACT 58.986 47.619 0.00 0.00 38.04 4.18
61 62 1.064952 CCGGCAAAAATACATCCCGAC 59.935 52.381 0.00 0.00 38.04 4.79
62 63 1.340211 ACCGGCAAAAATACATCCCGA 60.340 47.619 0.00 0.00 38.04 5.14
63 64 1.064952 GACCGGCAAAAATACATCCCG 59.935 52.381 0.00 0.00 35.74 5.14
64 65 2.096248 TGACCGGCAAAAATACATCCC 58.904 47.619 0.00 0.00 0.00 3.85
65 66 4.385358 AATGACCGGCAAAAATACATCC 57.615 40.909 0.00 0.00 0.00 3.51
66 67 6.453659 CGAAAAATGACCGGCAAAAATACATC 60.454 38.462 0.00 0.00 0.00 3.06
67 68 5.347364 CGAAAAATGACCGGCAAAAATACAT 59.653 36.000 0.00 0.00 0.00 2.29
68 69 4.681942 CGAAAAATGACCGGCAAAAATACA 59.318 37.500 0.00 0.00 0.00 2.29
69 70 4.433674 GCGAAAAATGACCGGCAAAAATAC 60.434 41.667 0.00 0.00 0.00 1.89
70 71 3.675698 GCGAAAAATGACCGGCAAAAATA 59.324 39.130 0.00 0.00 0.00 1.40
71 72 2.478514 GCGAAAAATGACCGGCAAAAAT 59.521 40.909 0.00 0.00 0.00 1.82
72 73 1.861575 GCGAAAAATGACCGGCAAAAA 59.138 42.857 0.00 0.00 0.00 1.94
73 74 1.492720 GCGAAAAATGACCGGCAAAA 58.507 45.000 0.00 0.00 0.00 2.44
74 75 0.661780 CGCGAAAAATGACCGGCAAA 60.662 50.000 0.00 0.00 0.00 3.68
75 76 1.081774 CGCGAAAAATGACCGGCAA 60.082 52.632 0.00 0.00 0.00 4.52
76 77 1.787057 AACGCGAAAAATGACCGGCA 61.787 50.000 15.93 0.00 0.00 5.69
77 78 1.081708 AACGCGAAAAATGACCGGC 60.082 52.632 15.93 0.00 0.00 6.13
78 79 0.727793 CCAACGCGAAAAATGACCGG 60.728 55.000 15.93 0.00 0.00 5.28
79 80 0.040781 ACCAACGCGAAAAATGACCG 60.041 50.000 15.93 0.00 0.00 4.79
80 81 1.404477 CACCAACGCGAAAAATGACC 58.596 50.000 15.93 0.00 0.00 4.02
81 82 1.268845 ACCACCAACGCGAAAAATGAC 60.269 47.619 15.93 0.00 0.00 3.06
82 83 1.025812 ACCACCAACGCGAAAAATGA 58.974 45.000 15.93 0.00 0.00 2.57
83 84 1.520590 CAACCACCAACGCGAAAAATG 59.479 47.619 15.93 4.00 0.00 2.32
84 85 1.846541 CAACCACCAACGCGAAAAAT 58.153 45.000 15.93 0.00 0.00 1.82
85 86 0.802607 GCAACCACCAACGCGAAAAA 60.803 50.000 15.93 0.00 0.00 1.94
86 87 1.226717 GCAACCACCAACGCGAAAA 60.227 52.632 15.93 0.00 0.00 2.29
87 88 2.409651 GCAACCACCAACGCGAAA 59.590 55.556 15.93 0.00 0.00 3.46
92 93 3.645157 GATCGCGCAACCACCAACG 62.645 63.158 8.75 0.00 0.00 4.10
93 94 2.175811 GATCGCGCAACCACCAAC 59.824 61.111 8.75 0.00 0.00 3.77
94 95 3.418913 CGATCGCGCAACCACCAA 61.419 61.111 8.75 0.00 0.00 3.67
95 96 4.673298 ACGATCGCGCAACCACCA 62.673 61.111 16.60 0.00 42.48 4.17
96 97 4.147322 CACGATCGCGCAACCACC 62.147 66.667 16.60 0.00 42.48 4.61
97 98 4.147322 CCACGATCGCGCAACCAC 62.147 66.667 16.60 0.00 42.48 4.16
138 139 3.121030 CAAGAGAAGTGGCGCCCG 61.121 66.667 26.77 0.00 0.00 6.13
139 140 3.435186 GCAAGAGAAGTGGCGCCC 61.435 66.667 26.77 15.80 0.00 6.13
140 141 3.793144 CGCAAGAGAAGTGGCGCC 61.793 66.667 22.73 22.73 43.14 6.53
143 144 2.747855 CCCCGCAAGAGAAGTGGC 60.748 66.667 0.00 0.00 43.02 5.01
144 145 2.747855 GCCCCGCAAGAGAAGTGG 60.748 66.667 0.00 0.00 43.02 4.00
145 146 3.121030 CGCCCCGCAAGAGAAGTG 61.121 66.667 0.00 0.00 43.02 3.16
162 163 1.664965 CCTATACCGCGCCTTCAGC 60.665 63.158 0.00 0.00 38.52 4.26
163 164 0.039074 CTCCTATACCGCGCCTTCAG 60.039 60.000 0.00 0.00 0.00 3.02
164 165 2.038690 CTCCTATACCGCGCCTTCA 58.961 57.895 0.00 0.00 0.00 3.02
165 166 1.373121 GCTCCTATACCGCGCCTTC 60.373 63.158 0.00 0.00 0.00 3.46
166 167 2.735237 GCTCCTATACCGCGCCTT 59.265 61.111 0.00 0.00 0.00 4.35
167 168 3.303928 GGCTCCTATACCGCGCCT 61.304 66.667 0.00 0.00 37.76 5.52
168 169 4.374645 GGGCTCCTATACCGCGCC 62.375 72.222 0.00 0.00 39.98 6.53
169 170 4.374645 GGGGCTCCTATACCGCGC 62.375 72.222 0.00 0.00 36.08 6.86
170 171 3.692406 GGGGGCTCCTATACCGCG 61.692 72.222 0.52 0.00 39.68 6.46
171 172 2.203803 AGGGGGCTCCTATACCGC 60.204 66.667 2.53 0.00 45.98 5.68
179 180 2.770475 GGAAGAGGAGGGGGCTCC 60.770 72.222 0.00 0.00 43.65 4.70
180 181 2.069430 CAGGAAGAGGAGGGGGCTC 61.069 68.421 0.00 0.00 0.00 4.70
181 182 2.041928 CAGGAAGAGGAGGGGGCT 59.958 66.667 0.00 0.00 0.00 5.19
182 183 3.803162 GCAGGAAGAGGAGGGGGC 61.803 72.222 0.00 0.00 0.00 5.80
183 184 3.474570 CGCAGGAAGAGGAGGGGG 61.475 72.222 0.00 0.00 0.00 5.40
184 185 2.685380 ACGCAGGAAGAGGAGGGG 60.685 66.667 0.00 0.00 0.00 4.79
185 186 2.896443 GACGCAGGAAGAGGAGGG 59.104 66.667 0.00 0.00 0.00 4.30
186 187 2.492090 CGACGCAGGAAGAGGAGG 59.508 66.667 0.00 0.00 0.00 4.30
187 188 2.492090 CCGACGCAGGAAGAGGAG 59.508 66.667 0.00 0.00 0.00 3.69
188 189 3.760035 GCCGACGCAGGAAGAGGA 61.760 66.667 0.43 0.00 34.03 3.71
189 190 3.708220 GAGCCGACGCAGGAAGAGG 62.708 68.421 0.43 0.00 37.52 3.69
190 191 2.202676 GAGCCGACGCAGGAAGAG 60.203 66.667 0.43 0.00 37.52 2.85
191 192 2.989253 TGAGCCGACGCAGGAAGA 60.989 61.111 0.43 0.00 37.52 2.87
192 193 2.811317 GTGAGCCGACGCAGGAAG 60.811 66.667 0.43 0.00 37.52 3.46
193 194 4.373116 GGTGAGCCGACGCAGGAA 62.373 66.667 0.43 0.00 37.52 3.36
195 196 4.803426 GAGGTGAGCCGACGCAGG 62.803 72.222 0.00 0.00 40.50 4.85
201 202 3.062466 CAGGTCGAGGTGAGCCGA 61.062 66.667 0.00 0.00 46.44 5.54
202 203 3.062466 TCAGGTCGAGGTGAGCCG 61.062 66.667 0.00 0.00 46.44 5.52
203 204 2.574399 GTCAGGTCGAGGTGAGCC 59.426 66.667 0.00 0.00 46.44 4.70
204 205 2.179517 CGTCAGGTCGAGGTGAGC 59.820 66.667 0.00 0.00 45.59 4.26
205 206 1.938657 ATGCGTCAGGTCGAGGTGAG 61.939 60.000 0.00 0.00 0.00 3.51
206 207 0.678684 TATGCGTCAGGTCGAGGTGA 60.679 55.000 0.00 0.00 0.00 4.02
207 208 0.172578 TTATGCGTCAGGTCGAGGTG 59.827 55.000 0.00 0.00 0.00 4.00
208 209 0.456221 CTTATGCGTCAGGTCGAGGT 59.544 55.000 0.00 0.00 0.00 3.85
209 210 0.249073 CCTTATGCGTCAGGTCGAGG 60.249 60.000 0.00 0.00 0.00 4.63
210 211 0.872021 GCCTTATGCGTCAGGTCGAG 60.872 60.000 7.96 0.00 32.06 4.04
211 212 1.141019 GCCTTATGCGTCAGGTCGA 59.859 57.895 7.96 0.00 32.06 4.20
212 213 3.706140 GCCTTATGCGTCAGGTCG 58.294 61.111 7.96 0.00 32.06 4.79
217 218 3.733344 GGCCGAGCCTTATGCGTCA 62.733 63.158 7.58 0.00 46.69 4.35
218 219 2.967615 GGCCGAGCCTTATGCGTC 60.968 66.667 7.58 0.00 46.69 5.19
228 229 3.622060 TTAGCTGGTTGGGCCGAGC 62.622 63.158 16.26 16.26 41.21 5.03
229 230 1.450312 CTTAGCTGGTTGGGCCGAG 60.450 63.158 0.00 0.00 41.21 4.63
230 231 1.899437 CTCTTAGCTGGTTGGGCCGA 61.899 60.000 0.00 0.00 41.21 5.54
231 232 1.450312 CTCTTAGCTGGTTGGGCCG 60.450 63.158 0.00 0.00 41.21 6.13
232 233 0.393132 GACTCTTAGCTGGTTGGGCC 60.393 60.000 0.00 0.00 37.90 5.80
233 234 0.615850 AGACTCTTAGCTGGTTGGGC 59.384 55.000 0.00 0.00 0.00 5.36
234 235 2.167487 GAGAGACTCTTAGCTGGTTGGG 59.833 54.545 6.40 0.00 0.00 4.12
235 236 2.159310 CGAGAGACTCTTAGCTGGTTGG 60.159 54.545 6.40 0.00 0.00 3.77
236 237 2.490115 ACGAGAGACTCTTAGCTGGTTG 59.510 50.000 6.40 0.00 0.00 3.77
237 238 2.490115 CACGAGAGACTCTTAGCTGGTT 59.510 50.000 6.40 0.00 0.00 3.67
238 239 2.088423 CACGAGAGACTCTTAGCTGGT 58.912 52.381 6.40 0.00 0.00 4.00
239 240 2.088423 ACACGAGAGACTCTTAGCTGG 58.912 52.381 6.40 1.38 0.00 4.85
240 241 4.814234 AGATACACGAGAGACTCTTAGCTG 59.186 45.833 6.40 7.80 0.00 4.24
241 242 5.031066 AGATACACGAGAGACTCTTAGCT 57.969 43.478 6.40 0.12 0.00 3.32
242 243 5.744666 AAGATACACGAGAGACTCTTAGC 57.255 43.478 6.40 0.00 0.00 3.09
268 269 9.577222 TGGATACATGATGATACACAATGAAAT 57.423 29.630 0.00 0.00 46.17 2.17
269 270 8.977267 TGGATACATGATGATACACAATGAAA 57.023 30.769 0.00 0.00 46.17 2.69
293 294 7.382218 AGCTCGTTCTCCAAAATAACATTTTTG 59.618 33.333 3.31 3.31 43.19 2.44
294 295 7.433680 AGCTCGTTCTCCAAAATAACATTTTT 58.566 30.769 0.00 0.00 0.00 1.94
295 296 6.981722 AGCTCGTTCTCCAAAATAACATTTT 58.018 32.000 0.00 0.00 0.00 1.82
296 297 6.575162 AGCTCGTTCTCCAAAATAACATTT 57.425 33.333 0.00 0.00 0.00 2.32
297 298 6.183309 GAGCTCGTTCTCCAAAATAACATT 57.817 37.500 0.00 0.00 0.00 2.71
298 299 5.803020 GAGCTCGTTCTCCAAAATAACAT 57.197 39.130 0.00 0.00 0.00 2.71
309 310 3.712020 CTCACTGGAGCTCGTTCTC 57.288 57.895 7.83 0.00 33.67 2.87
318 319 9.793259 TTATTTAAAATATAGGGCTCACTGGAG 57.207 33.333 0.00 0.00 44.33 3.86
406 407 9.033481 GCATTACAATTTGCACATGTGTAATAT 57.967 29.630 26.72 19.42 41.25 1.28
407 408 8.249638 AGCATTACAATTTGCACATGTGTAATA 58.750 29.630 26.72 18.27 41.25 0.98
408 409 7.063662 CAGCATTACAATTTGCACATGTGTAAT 59.936 33.333 26.72 21.47 42.98 1.89
409 410 6.365518 CAGCATTACAATTTGCACATGTGTAA 59.634 34.615 23.30 23.30 41.35 2.41
410 411 5.862860 CAGCATTACAATTTGCACATGTGTA 59.137 36.000 26.01 20.04 41.35 2.90
411 412 4.687018 CAGCATTACAATTTGCACATGTGT 59.313 37.500 26.01 7.84 41.35 3.72
412 413 4.924462 TCAGCATTACAATTTGCACATGTG 59.076 37.500 21.83 21.83 41.35 3.21
413 414 5.136816 TCAGCATTACAATTTGCACATGT 57.863 34.783 0.00 0.00 41.35 3.21
414 415 6.073711 TGTTTCAGCATTACAATTTGCACATG 60.074 34.615 2.88 0.00 41.35 3.21
415 416 5.990386 TGTTTCAGCATTACAATTTGCACAT 59.010 32.000 2.88 0.00 41.35 3.21
416 417 5.354767 TGTTTCAGCATTACAATTTGCACA 58.645 33.333 2.88 0.00 41.35 4.57
417 418 5.903764 TGTTTCAGCATTACAATTTGCAC 57.096 34.783 2.88 0.00 41.35 4.57
418 419 6.915544 TTTGTTTCAGCATTACAATTTGCA 57.084 29.167 2.88 0.00 41.35 4.08
419 420 7.531534 GTCATTTGTTTCAGCATTACAATTTGC 59.468 33.333 0.00 0.00 39.17 3.68
420 421 8.011106 GGTCATTTGTTTCAGCATTACAATTTG 58.989 33.333 0.00 0.00 32.39 2.32
421 422 7.714377 TGGTCATTTGTTTCAGCATTACAATTT 59.286 29.630 0.00 0.00 32.39 1.82
422 423 7.215789 TGGTCATTTGTTTCAGCATTACAATT 58.784 30.769 0.00 0.00 32.39 2.32
423 424 6.757237 TGGTCATTTGTTTCAGCATTACAAT 58.243 32.000 0.00 0.00 32.39 2.71
424 425 6.154203 TGGTCATTTGTTTCAGCATTACAA 57.846 33.333 0.00 0.00 0.00 2.41
425 426 5.781210 TGGTCATTTGTTTCAGCATTACA 57.219 34.783 0.00 0.00 0.00 2.41
426 427 5.062558 GCATGGTCATTTGTTTCAGCATTAC 59.937 40.000 0.00 0.00 0.00 1.89
427 428 5.170021 GCATGGTCATTTGTTTCAGCATTA 58.830 37.500 0.00 0.00 0.00 1.90
428 429 3.998341 GCATGGTCATTTGTTTCAGCATT 59.002 39.130 0.00 0.00 0.00 3.56
429 430 3.592059 GCATGGTCATTTGTTTCAGCAT 58.408 40.909 0.00 0.00 0.00 3.79
430 431 2.607526 CGCATGGTCATTTGTTTCAGCA 60.608 45.455 0.00 0.00 0.00 4.41
431 432 1.987770 CGCATGGTCATTTGTTTCAGC 59.012 47.619 0.00 0.00 0.00 4.26
432 433 3.058016 ACTCGCATGGTCATTTGTTTCAG 60.058 43.478 0.00 0.00 0.00 3.02
433 434 2.884012 ACTCGCATGGTCATTTGTTTCA 59.116 40.909 0.00 0.00 0.00 2.69
434 435 3.559238 ACTCGCATGGTCATTTGTTTC 57.441 42.857 0.00 0.00 0.00 2.78
435 436 4.277174 TGTAACTCGCATGGTCATTTGTTT 59.723 37.500 0.00 0.00 0.00 2.83
436 437 3.818210 TGTAACTCGCATGGTCATTTGTT 59.182 39.130 0.00 0.00 0.00 2.83
437 438 3.407698 TGTAACTCGCATGGTCATTTGT 58.592 40.909 0.00 0.00 0.00 2.83
438 439 4.418013 TTGTAACTCGCATGGTCATTTG 57.582 40.909 0.00 0.00 0.00 2.32
439 440 5.643379 AATTGTAACTCGCATGGTCATTT 57.357 34.783 0.00 0.00 0.00 2.32
440 441 5.643379 AAATTGTAACTCGCATGGTCATT 57.357 34.783 0.00 0.00 0.00 2.57
441 442 5.643379 AAAATTGTAACTCGCATGGTCAT 57.357 34.783 0.00 0.00 0.00 3.06
442 443 5.446143 AAAAATTGTAACTCGCATGGTCA 57.554 34.783 0.00 0.00 0.00 4.02
471 472 8.870160 TGTTCATCTTTTCAAAATCACGATTT 57.130 26.923 0.00 0.00 42.35 2.17
472 473 8.870160 TTGTTCATCTTTTCAAAATCACGATT 57.130 26.923 0.00 0.00 0.00 3.34
473 474 8.918658 CATTGTTCATCTTTTCAAAATCACGAT 58.081 29.630 0.00 0.00 0.00 3.73
474 475 7.096106 GCATTGTTCATCTTTTCAAAATCACGA 60.096 33.333 0.00 0.00 0.00 4.35
475 476 7.005380 GCATTGTTCATCTTTTCAAAATCACG 58.995 34.615 0.00 0.00 0.00 4.35
476 477 7.853524 TGCATTGTTCATCTTTTCAAAATCAC 58.146 30.769 0.00 0.00 0.00 3.06
477 478 8.499967 CATGCATTGTTCATCTTTTCAAAATCA 58.500 29.630 0.00 0.00 0.00 2.57
478 479 8.500773 ACATGCATTGTTCATCTTTTCAAAATC 58.499 29.630 0.00 0.00 33.74 2.17
479 480 8.385898 ACATGCATTGTTCATCTTTTCAAAAT 57.614 26.923 0.00 0.00 33.74 1.82
480 481 7.789273 ACATGCATTGTTCATCTTTTCAAAA 57.211 28.000 0.00 0.00 33.74 2.44
481 482 9.491675 AATACATGCATTGTTCATCTTTTCAAA 57.508 25.926 0.00 0.00 39.87 2.69
487 488 9.740239 GTGAATAATACATGCATTGTTCATCTT 57.260 29.630 24.90 0.00 43.44 2.40
488 489 9.128404 AGTGAATAATACATGCATTGTTCATCT 57.872 29.630 24.90 20.75 43.44 2.90
508 509 9.347240 CAAGATGGTGATTTCCTAATAGTGAAT 57.653 33.333 0.00 0.00 0.00 2.57
509 510 8.328758 ACAAGATGGTGATTTCCTAATAGTGAA 58.671 33.333 0.00 0.00 0.00 3.18
510 511 7.861629 ACAAGATGGTGATTTCCTAATAGTGA 58.138 34.615 0.00 0.00 0.00 3.41
511 512 7.770433 TGACAAGATGGTGATTTCCTAATAGTG 59.230 37.037 0.00 0.00 0.00 2.74
512 513 7.861629 TGACAAGATGGTGATTTCCTAATAGT 58.138 34.615 0.00 0.00 0.00 2.12
513 514 8.915057 ATGACAAGATGGTGATTTCCTAATAG 57.085 34.615 0.00 0.00 0.00 1.73
514 515 9.699410 AAATGACAAGATGGTGATTTCCTAATA 57.301 29.630 0.00 0.00 30.36 0.98
515 516 8.599624 AAATGACAAGATGGTGATTTCCTAAT 57.400 30.769 0.00 0.00 30.36 1.73
516 517 8.421249 AAAATGACAAGATGGTGATTTCCTAA 57.579 30.769 0.00 0.00 34.25 2.69
517 518 8.421249 AAAAATGACAAGATGGTGATTTCCTA 57.579 30.769 0.00 0.00 34.25 2.94
518 519 6.923199 AAAATGACAAGATGGTGATTTCCT 57.077 33.333 0.00 0.00 34.25 3.36
548 549 9.686683 ATGATGAAATAAGTAAACAGGTAAGCT 57.313 29.630 0.00 0.00 0.00 3.74
549 550 9.937175 GATGATGAAATAAGTAAACAGGTAAGC 57.063 33.333 0.00 0.00 0.00 3.09
685 688 0.251386 TTTTGGAGCCGGGTGCATTA 60.251 50.000 28.83 16.71 44.83 1.90
693 696 0.811281 GAGTGGATTTTTGGAGCCGG 59.189 55.000 0.00 0.00 0.00 6.13
737 740 6.601741 ACAACAATAATGCACTTGTTTTGG 57.398 33.333 16.84 11.03 42.16 3.28
833 874 3.495100 GGATCCATTATCAGTGGTTCGCT 60.495 47.826 6.95 0.00 36.67 4.93
834 875 2.808543 GGATCCATTATCAGTGGTTCGC 59.191 50.000 6.95 0.00 36.67 4.70
836 877 3.071023 TCCGGATCCATTATCAGTGGTTC 59.929 47.826 13.41 0.00 37.96 3.62
841 882 3.055819 CGGAATCCGGATCCATTATCAGT 60.056 47.826 19.43 0.00 44.15 3.41
842 883 3.525537 CGGAATCCGGATCCATTATCAG 58.474 50.000 19.43 7.36 44.15 2.90
843 884 3.610040 CGGAATCCGGATCCATTATCA 57.390 47.619 19.43 0.00 44.15 2.15
886 927 1.342555 TCGACCATTTAGTCAACGCG 58.657 50.000 3.53 3.53 36.52 6.01
887 928 4.743151 TCATATCGACCATTTAGTCAACGC 59.257 41.667 0.00 0.00 36.52 4.84
955 996 1.757340 CGTAGGGGAGGAGTGGGAC 60.757 68.421 0.00 0.00 0.00 4.46
999 1040 3.838271 TCCGGCTCCTGCGACATC 61.838 66.667 0.00 0.00 40.82 3.06
1327 1368 1.235724 ACAAGAAAAGCACTACCCGC 58.764 50.000 0.00 0.00 0.00 6.13
1335 1376 8.339344 TCATTGATGATCTAACAAGAAAAGCA 57.661 30.769 0.00 0.00 0.00 3.91
1359 1400 9.617975 GCATAAAATGTAAGATCCAGCTAATTC 57.382 33.333 0.00 0.00 0.00 2.17
1364 1405 4.516698 CGGCATAAAATGTAAGATCCAGCT 59.483 41.667 0.00 0.00 0.00 4.24
1387 1428 6.127647 TGAGATAGCAATTTCATCCAAACCAC 60.128 38.462 0.00 0.00 0.00 4.16
1390 1431 8.192774 TGAATGAGATAGCAATTTCATCCAAAC 58.807 33.333 0.00 0.00 36.26 2.93
1409 1450 1.100510 CAGTGGGGCATGTGAATGAG 58.899 55.000 0.00 0.00 0.00 2.90
1444 1485 6.476706 CACTTGTTTCCATTTTCTTGTCTTCC 59.523 38.462 0.00 0.00 0.00 3.46
1448 1489 7.545615 AGTTTCACTTGTTTCCATTTTCTTGTC 59.454 33.333 0.00 0.00 0.00 3.18
1514 1558 7.987458 CCTTGCAGAGATTAGACTTTTATACCA 59.013 37.037 0.00 0.00 0.00 3.25
1520 1564 5.471456 CACACCTTGCAGAGATTAGACTTTT 59.529 40.000 0.00 0.00 0.00 2.27
1528 1572 0.957395 CGCCACACCTTGCAGAGATT 60.957 55.000 0.00 0.00 0.00 2.40
1544 1589 1.134640 ACCAAAACCCAAAGAAACGCC 60.135 47.619 0.00 0.00 0.00 5.68
1546 1591 3.119280 AGACACCAAAACCCAAAGAAACG 60.119 43.478 0.00 0.00 0.00 3.60
1613 1658 4.708177 GCATCTTATACCTTCTTGCCTCA 58.292 43.478 0.00 0.00 0.00 3.86
1685 1730 2.638480 TGCCCCATCTTACATACTGC 57.362 50.000 0.00 0.00 0.00 4.40
1802 1898 1.135527 CGGTGGCTATTTGAGGTACGA 59.864 52.381 0.00 0.00 0.00 3.43
1820 1916 4.357918 AGATATCAGGAACCCATTTCGG 57.642 45.455 5.32 0.00 34.67 4.30
1951 2085 6.591448 TGCACAGTATTGAAACTCTGATACAG 59.409 38.462 0.00 0.00 0.00 2.74
1953 2087 6.968131 TGCACAGTATTGAAACTCTGATAC 57.032 37.500 0.00 0.00 0.00 2.24
1956 2090 7.105588 ACATATGCACAGTATTGAAACTCTGA 58.894 34.615 1.58 0.00 0.00 3.27
1990 2124 8.470805 TGTTTATTCTTGACAAAACAGCCTAAA 58.529 29.630 0.00 0.00 37.02 1.85
2531 2676 2.485814 GAGTCAGGCAACCTAGCAAAAG 59.514 50.000 0.00 0.00 35.83 2.27
2685 2837 1.942677 TGAAAGTTTCGCGGAACTCA 58.057 45.000 31.85 23.29 38.86 3.41
2910 3063 3.255642 GCTTGAAAAACCATGTAGCAGGA 59.744 43.478 0.00 0.00 0.00 3.86
3151 3308 6.502136 TGTACCATTCGATGCAATTTTGTA 57.498 33.333 0.00 0.00 0.00 2.41
3164 3321 5.359756 TCTGGAGATGAATTGTACCATTCG 58.640 41.667 13.34 0.36 0.00 3.34
3305 3462 7.380423 AGAAAACTATATACATGACAGGGCT 57.620 36.000 0.00 0.00 0.00 5.19
3631 3821 1.207570 TGTGTAAGTCAACGGGTGTGT 59.792 47.619 0.00 0.00 0.00 3.72
3652 3842 3.519510 TCTGTCCCAATAAAGACCTGGAG 59.480 47.826 0.00 0.00 31.38 3.86
3787 3979 9.529325 TTATTTGACGGATAGACTTGAATACTG 57.471 33.333 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.