Multiple sequence alignment - TraesCS5D01G145100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G145100 chr5D 100.000 7977 0 0 1 7977 231743352 231751328 0.000000e+00 14731.0
1 TraesCS5D01G145100 chr5D 82.407 108 11 7 1731 1836 489686260 489686159 3.970000e-13 87.9
2 TraesCS5D01G145100 chr5B 92.695 3696 150 46 682 4306 273721329 273717683 0.000000e+00 5219.0
3 TraesCS5D01G145100 chr5B 92.539 1595 76 20 4629 6208 273717287 273715721 0.000000e+00 2246.0
4 TraesCS5D01G145100 chr5B 93.504 1170 42 11 6238 7395 273715498 273714351 0.000000e+00 1709.0
5 TraesCS5D01G145100 chr5B 88.421 570 44 5 7410 7977 273714365 273713816 0.000000e+00 667.0
6 TraesCS5D01G145100 chr5B 90.223 358 30 2 4292 4649 273717652 273717300 5.640000e-126 462.0
7 TraesCS5D01G145100 chr5A 93.693 2283 104 24 1880 4157 325374919 325372672 0.000000e+00 3382.0
8 TraesCS5D01G145100 chr5A 93.394 2089 82 19 5143 7197 325372656 325370590 0.000000e+00 3042.0
9 TraesCS5D01G145100 chr5A 92.922 1441 61 13 305 1735 325376736 325375327 0.000000e+00 2058.0
10 TraesCS5D01G145100 chr5A 89.591 807 68 12 7185 7977 325369364 325368560 0.000000e+00 1011.0
11 TraesCS5D01G145100 chr5A 85.965 114 11 4 7410 7518 653300178 653300065 5.060000e-22 117.0
12 TraesCS5D01G145100 chr5A 82.301 113 17 3 1720 1831 565029160 565029050 2.370000e-15 95.3
13 TraesCS5D01G145100 chr5A 83.019 106 17 1 4480 4585 671441453 671441557 2.370000e-15 95.3
14 TraesCS5D01G145100 chr5A 78.947 95 18 2 4487 4580 546410471 546410378 6.680000e-06 63.9
15 TraesCS5D01G145100 chr2A 83.007 153 22 4 2981 3131 165849923 165849773 1.400000e-27 135.0
16 TraesCS5D01G145100 chr2A 89.362 94 7 3 7426 7517 603544182 603544090 1.820000e-21 115.0
17 TraesCS5D01G145100 chr2A 86.667 90 12 0 72 161 99146669 99146580 5.090000e-17 100.0
18 TraesCS5D01G145100 chr1A 89.091 110 8 2 7410 7515 531509024 531509133 5.020000e-27 134.0
19 TraesCS5D01G145100 chr1A 84.058 69 8 2 75 141 11413163 11413096 6.680000e-06 63.9
20 TraesCS5D01G145100 chr2D 82.353 153 23 4 2981 3131 155736081 155735931 6.500000e-26 130.0
21 TraesCS5D01G145100 chr6B 85.217 115 17 0 4480 4594 392093609 392093723 1.410000e-22 119.0
22 TraesCS5D01G145100 chr4D 90.217 92 7 2 7429 7518 207595685 207595594 1.410000e-22 119.0
23 TraesCS5D01G145100 chr4D 89.011 91 8 2 7426 7514 505309451 505309361 2.350000e-20 111.0
24 TraesCS5D01G145100 chr4D 90.789 76 7 0 90 165 71060548 71060623 1.420000e-17 102.0
25 TraesCS5D01G145100 chr4D 88.158 76 8 1 90 164 80948756 80948681 1.100000e-13 89.8
26 TraesCS5D01G145100 chr3A 86.916 107 10 4 7410 7513 462419857 462419962 5.060000e-22 117.0
27 TraesCS5D01G145100 chr3A 83.810 105 16 1 83 186 20292655 20292759 1.830000e-16 99.0
28 TraesCS5D01G145100 chr3A 80.531 113 19 3 1720 1831 38506013 38506123 5.130000e-12 84.2
29 TraesCS5D01G145100 chr1B 84.956 113 15 2 7410 7520 349715695 349715807 6.540000e-21 113.0
30 TraesCS5D01G145100 chr1B 85.870 92 9 3 1741 1831 424083911 424083823 2.370000e-15 95.3
31 TraesCS5D01G145100 chr1B 82.524 103 14 3 1727 1829 632422638 632422736 3.970000e-13 87.9
32 TraesCS5D01G145100 chr7D 82.727 110 17 2 4486 4594 549745323 549745431 6.590000e-16 97.1
33 TraesCS5D01G145100 chr7D 82.692 104 12 5 1728 1829 583068883 583068982 3.970000e-13 87.9
34 TraesCS5D01G145100 chr7B 81.897 116 18 3 4480 4594 361784039 361784152 2.370000e-15 95.3
35 TraesCS5D01G145100 chr7B 82.243 107 17 2 4480 4585 23645859 23645964 3.070000e-14 91.6
36 TraesCS5D01G145100 chr7A 82.301 113 17 3 1720 1831 643526397 643526507 2.370000e-15 95.3
37 TraesCS5D01G145100 chr1D 85.714 91 8 4 1741 1829 314013685 314013598 3.070000e-14 91.6
38 TraesCS5D01G145100 chr1D 79.464 112 14 7 4486 4594 50765230 50765125 3.990000e-08 71.3
39 TraesCS5D01G145100 chr6A 80.870 115 21 1 4480 4594 121435859 121435972 1.100000e-13 89.8
40 TraesCS5D01G145100 chr6D 81.132 106 18 2 61 164 292029182 292029077 5.130000e-12 84.2
41 TraesCS5D01G145100 chr4B 91.379 58 4 1 4548 4605 562616090 562616146 2.390000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G145100 chr5D 231743352 231751328 7976 False 14731.00 14731 100.0000 1 7977 1 chr5D.!!$F1 7976
1 TraesCS5D01G145100 chr5B 273713816 273721329 7513 True 2060.60 5219 91.4764 682 7977 5 chr5B.!!$R1 7295
2 TraesCS5D01G145100 chr5A 325368560 325376736 8176 True 2373.25 3382 92.4000 305 7977 4 chr5A.!!$R4 7672

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
85 86 0.036388 CCGGTGGCAGTAGTGTTCAT 60.036 55.000 0.0 0.0 0.00 2.57 F
244 245 0.107945 GAGGAAGGCAGACGCATCTT 60.108 55.000 0.0 0.0 41.24 2.40 F
245 246 0.392193 AGGAAGGCAGACGCATCTTG 60.392 55.000 0.0 0.0 41.24 3.02 F
554 556 0.107945 AATCGTCCTTCTCAGGCAGC 60.108 55.000 0.0 0.0 40.58 5.25 F
913 941 1.148157 CCTATCACGACGGCAAGCTG 61.148 60.000 0.0 0.0 0.00 4.24 F
2529 2928 1.357258 CTTCTCGCTTGCATCGCAGT 61.357 55.000 8.9 0.0 40.61 4.40 F
2827 3229 3.390521 ATCGCCTTCCACGCCTCA 61.391 61.111 0.0 0.0 0.00 3.86 F
3636 4038 0.179169 GTCGACGAAGCAGGTACTCC 60.179 60.000 0.0 0.0 34.60 3.85 F
3638 4040 0.456312 CGACGAAGCAGGTACTCCAC 60.456 60.000 0.0 0.0 34.60 4.02 F
3639 4041 0.889306 GACGAAGCAGGTACTCCACT 59.111 55.000 0.0 0.0 34.60 4.00 F
3640 4042 1.272769 GACGAAGCAGGTACTCCACTT 59.727 52.381 0.0 0.0 34.60 3.16 F
5491 5991 2.012673 GAAGAAGCGATCAAGGCACAT 58.987 47.619 0.0 0.0 0.00 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1508 1549 3.002862 TGAATTGCACACGTAGTTTGACC 59.997 43.478 0.00 0.0 41.30 4.02 R
2418 2808 2.169352 AGAACTCACACTGACAGCACTT 59.831 45.455 1.25 0.0 0.00 3.16 R
2419 2809 1.759445 AGAACTCACACTGACAGCACT 59.241 47.619 1.25 0.0 0.00 4.40 R
2564 2966 1.962807 CATCAGCCCCAAGAACAACAA 59.037 47.619 0.00 0.0 0.00 2.83 R
2827 3229 1.075896 GGAGGAGACGGAGACCCAT 60.076 63.158 0.00 0.0 0.00 4.00 R
3463 3865 1.003355 CAATGGCGGAGGTGACAGT 60.003 57.895 0.00 0.0 0.00 3.55 R
4043 4457 1.003839 CTTGGAACCAGCCAGCGTA 60.004 57.895 0.00 0.0 39.52 4.42 R
5471 5971 1.442769 TGTGCCTTGATCGCTTCTTC 58.557 50.000 0.00 0.0 0.00 2.87 R
5720 6231 3.317150 CAAAGGAAAAAGGCCAACGATC 58.683 45.455 5.01 0.0 0.00 3.69 R
5884 6398 2.829720 TGCTTGGTCCTTATGTAGACGT 59.170 45.455 0.00 0.0 33.66 4.34 R
5910 6424 3.941483 GGTGTAAGCATGTAAGAGCATGT 59.059 43.478 7.71 0.0 45.75 3.21 R
7322 9322 0.250770 GAAAAAGGTGAGGAGGCGGT 60.251 55.000 0.00 0.0 0.00 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.647654 GTGCACGGAGACTTTCGA 57.352 55.556 0.00 0.00 0.00 3.71
18 19 2.435741 GTGCACGGAGACTTTCGAG 58.564 57.895 0.00 0.49 0.00 4.04
19 20 1.372997 TGCACGGAGACTTTCGAGC 60.373 57.895 12.12 12.12 41.81 5.03
20 21 1.080434 GCACGGAGACTTTCGAGCT 60.080 57.895 11.87 0.00 39.25 4.09
21 22 1.347817 GCACGGAGACTTTCGAGCTG 61.348 60.000 0.00 0.00 39.25 4.24
22 23 0.039074 CACGGAGACTTTCGAGCTGT 60.039 55.000 0.00 0.00 0.00 4.40
23 24 0.241481 ACGGAGACTTTCGAGCTGTC 59.759 55.000 0.00 0.00 0.00 3.51
24 25 0.241213 CGGAGACTTTCGAGCTGTCA 59.759 55.000 14.02 0.00 33.56 3.58
25 26 1.135257 CGGAGACTTTCGAGCTGTCAT 60.135 52.381 14.02 3.27 33.56 3.06
26 27 2.672478 CGGAGACTTTCGAGCTGTCATT 60.672 50.000 14.02 0.00 33.56 2.57
27 28 2.670414 GGAGACTTTCGAGCTGTCATTG 59.330 50.000 14.02 0.00 33.56 2.82
28 29 3.579709 GAGACTTTCGAGCTGTCATTGA 58.420 45.455 14.02 0.00 33.56 2.57
29 30 3.321497 AGACTTTCGAGCTGTCATTGAC 58.679 45.455 9.93 9.93 33.56 3.18
30 31 3.059884 GACTTTCGAGCTGTCATTGACA 58.940 45.455 18.08 18.08 40.50 3.58
31 32 3.466836 ACTTTCGAGCTGTCATTGACAA 58.533 40.909 19.44 2.67 42.26 3.18
32 33 3.876914 ACTTTCGAGCTGTCATTGACAAA 59.123 39.130 19.44 8.57 42.26 2.83
33 34 4.024556 ACTTTCGAGCTGTCATTGACAAAG 60.025 41.667 19.44 18.86 42.26 2.77
34 35 3.111853 TCGAGCTGTCATTGACAAAGT 57.888 42.857 19.44 7.76 42.26 2.66
35 36 4.251543 TCGAGCTGTCATTGACAAAGTA 57.748 40.909 19.44 3.27 42.26 2.24
36 37 4.627058 TCGAGCTGTCATTGACAAAGTAA 58.373 39.130 19.44 4.26 42.26 2.24
37 38 5.053811 TCGAGCTGTCATTGACAAAGTAAA 58.946 37.500 19.44 2.83 42.26 2.01
38 39 5.177511 TCGAGCTGTCATTGACAAAGTAAAG 59.822 40.000 19.44 8.03 42.26 1.85
39 40 5.113502 AGCTGTCATTGACAAAGTAAAGC 57.886 39.130 19.44 16.35 42.26 3.51
40 41 4.022849 AGCTGTCATTGACAAAGTAAAGCC 60.023 41.667 19.44 4.33 42.26 4.35
41 42 4.261572 GCTGTCATTGACAAAGTAAAGCCA 60.262 41.667 19.44 0.00 42.26 4.75
42 43 5.437289 TGTCATTGACAAAGTAAAGCCAG 57.563 39.130 16.95 0.00 39.78 4.85
43 44 4.229876 GTCATTGACAAAGTAAAGCCAGC 58.770 43.478 11.93 0.00 32.09 4.85
44 45 4.022849 GTCATTGACAAAGTAAAGCCAGCT 60.023 41.667 11.93 0.00 32.09 4.24
45 46 4.216257 TCATTGACAAAGTAAAGCCAGCTC 59.784 41.667 0.00 0.00 0.00 4.09
46 47 2.504367 TGACAAAGTAAAGCCAGCTCC 58.496 47.619 0.00 0.00 0.00 4.70
47 48 1.464997 GACAAAGTAAAGCCAGCTCCG 59.535 52.381 0.00 0.00 0.00 4.63
48 49 0.804989 CAAAGTAAAGCCAGCTCCGG 59.195 55.000 0.00 0.00 0.00 5.14
49 50 0.400594 AAAGTAAAGCCAGCTCCGGT 59.599 50.000 0.00 0.00 0.00 5.28
50 51 1.272807 AAGTAAAGCCAGCTCCGGTA 58.727 50.000 0.00 0.00 0.00 4.02
51 52 0.824759 AGTAAAGCCAGCTCCGGTAG 59.175 55.000 0.00 0.00 0.00 3.18
52 53 0.179081 GTAAAGCCAGCTCCGGTAGG 60.179 60.000 0.00 0.11 39.46 3.18
53 54 1.335132 TAAAGCCAGCTCCGGTAGGG 61.335 60.000 0.00 0.05 38.33 3.53
64 65 3.597728 GGTAGGGGAGCGAGCTCG 61.598 72.222 31.37 31.37 43.59 5.03
65 66 2.829458 GTAGGGGAGCGAGCTCGT 60.829 66.667 34.46 22.24 43.59 4.18
66 67 2.516460 TAGGGGAGCGAGCTCGTC 60.516 66.667 34.46 27.62 43.59 4.20
71 72 4.838486 GAGCGAGCTCGTCCGGTG 62.838 72.222 34.46 8.06 42.22 4.94
75 76 4.803426 GAGCTCGTCCGGTGGCAG 62.803 72.222 0.00 0.00 0.00 4.85
77 78 3.755628 GCTCGTCCGGTGGCAGTA 61.756 66.667 0.00 0.00 0.00 2.74
78 79 2.490217 CTCGTCCGGTGGCAGTAG 59.510 66.667 0.00 0.00 0.00 2.57
79 80 2.282674 TCGTCCGGTGGCAGTAGT 60.283 61.111 0.00 0.00 0.00 2.73
80 81 2.126071 CGTCCGGTGGCAGTAGTG 60.126 66.667 0.00 0.00 0.00 2.74
81 82 2.927580 CGTCCGGTGGCAGTAGTGT 61.928 63.158 0.00 0.00 0.00 3.55
82 83 1.370064 GTCCGGTGGCAGTAGTGTT 59.630 57.895 0.00 0.00 0.00 3.32
83 84 0.669625 GTCCGGTGGCAGTAGTGTTC 60.670 60.000 0.00 0.00 0.00 3.18
84 85 1.116536 TCCGGTGGCAGTAGTGTTCA 61.117 55.000 0.00 0.00 0.00 3.18
85 86 0.036388 CCGGTGGCAGTAGTGTTCAT 60.036 55.000 0.00 0.00 0.00 2.57
86 87 1.610624 CCGGTGGCAGTAGTGTTCATT 60.611 52.381 0.00 0.00 0.00 2.57
87 88 1.732259 CGGTGGCAGTAGTGTTCATTC 59.268 52.381 0.00 0.00 0.00 2.67
88 89 1.732259 GGTGGCAGTAGTGTTCATTCG 59.268 52.381 0.00 0.00 0.00 3.34
89 90 1.732259 GTGGCAGTAGTGTTCATTCGG 59.268 52.381 0.00 0.00 0.00 4.30
90 91 1.346395 TGGCAGTAGTGTTCATTCGGT 59.654 47.619 0.00 0.00 0.00 4.69
91 92 1.732259 GGCAGTAGTGTTCATTCGGTG 59.268 52.381 0.00 0.00 0.00 4.94
92 93 1.732259 GCAGTAGTGTTCATTCGGTGG 59.268 52.381 0.00 0.00 0.00 4.61
93 94 2.870435 GCAGTAGTGTTCATTCGGTGGT 60.870 50.000 0.00 0.00 0.00 4.16
94 95 2.993899 CAGTAGTGTTCATTCGGTGGTC 59.006 50.000 0.00 0.00 0.00 4.02
95 96 2.897969 AGTAGTGTTCATTCGGTGGTCT 59.102 45.455 0.00 0.00 0.00 3.85
96 97 2.457366 AGTGTTCATTCGGTGGTCTC 57.543 50.000 0.00 0.00 0.00 3.36
97 98 1.691976 AGTGTTCATTCGGTGGTCTCA 59.308 47.619 0.00 0.00 0.00 3.27
98 99 2.069273 GTGTTCATTCGGTGGTCTCAG 58.931 52.381 0.00 0.00 0.00 3.35
99 100 1.967779 TGTTCATTCGGTGGTCTCAGA 59.032 47.619 0.00 0.00 0.00 3.27
100 101 2.367241 TGTTCATTCGGTGGTCTCAGAA 59.633 45.455 0.00 0.00 0.00 3.02
101 102 3.007940 TGTTCATTCGGTGGTCTCAGAAT 59.992 43.478 0.00 0.00 34.06 2.40
102 103 3.526931 TCATTCGGTGGTCTCAGAATC 57.473 47.619 0.00 0.00 31.70 2.52
103 104 3.099905 TCATTCGGTGGTCTCAGAATCT 58.900 45.455 0.00 0.00 31.70 2.40
104 105 3.515502 TCATTCGGTGGTCTCAGAATCTT 59.484 43.478 0.00 0.00 31.70 2.40
105 106 3.319137 TTCGGTGGTCTCAGAATCTTG 57.681 47.619 0.00 0.00 0.00 3.02
106 107 2.525368 TCGGTGGTCTCAGAATCTTGA 58.475 47.619 0.00 0.00 0.00 3.02
107 108 3.099905 TCGGTGGTCTCAGAATCTTGAT 58.900 45.455 0.00 0.00 0.00 2.57
108 109 3.118992 TCGGTGGTCTCAGAATCTTGATG 60.119 47.826 0.00 0.00 0.00 3.07
109 110 3.368843 CGGTGGTCTCAGAATCTTGATGT 60.369 47.826 0.00 0.00 0.00 3.06
110 111 4.142160 CGGTGGTCTCAGAATCTTGATGTA 60.142 45.833 0.00 0.00 0.00 2.29
111 112 5.624509 CGGTGGTCTCAGAATCTTGATGTAA 60.625 44.000 0.00 0.00 0.00 2.41
112 113 6.352516 GGTGGTCTCAGAATCTTGATGTAAT 58.647 40.000 0.00 0.00 0.00 1.89
113 114 6.825721 GGTGGTCTCAGAATCTTGATGTAATT 59.174 38.462 0.00 0.00 0.00 1.40
114 115 7.337942 GGTGGTCTCAGAATCTTGATGTAATTT 59.662 37.037 0.00 0.00 0.00 1.82
115 116 8.734386 GTGGTCTCAGAATCTTGATGTAATTTT 58.266 33.333 0.00 0.00 0.00 1.82
116 117 9.300681 TGGTCTCAGAATCTTGATGTAATTTTT 57.699 29.630 0.00 0.00 0.00 1.94
127 128 9.430623 TCTTGATGTAATTTTTATCGTGTCTGA 57.569 29.630 0.00 0.00 0.00 3.27
128 129 9.694520 CTTGATGTAATTTTTATCGTGTCTGAG 57.305 33.333 0.00 0.00 0.00 3.35
129 130 8.996024 TGATGTAATTTTTATCGTGTCTGAGA 57.004 30.769 0.00 0.00 0.00 3.27
130 131 9.599866 TGATGTAATTTTTATCGTGTCTGAGAT 57.400 29.630 0.00 0.00 0.00 2.75
131 132 9.855361 GATGTAATTTTTATCGTGTCTGAGATG 57.145 33.333 0.00 0.00 0.00 2.90
132 133 7.684670 TGTAATTTTTATCGTGTCTGAGATGC 58.315 34.615 0.00 0.00 0.00 3.91
133 134 6.992063 AATTTTTATCGTGTCTGAGATGCT 57.008 33.333 0.00 0.00 0.00 3.79
134 135 6.992063 ATTTTTATCGTGTCTGAGATGCTT 57.008 33.333 0.00 0.00 0.00 3.91
135 136 6.801539 TTTTTATCGTGTCTGAGATGCTTT 57.198 33.333 0.00 0.00 0.00 3.51
136 137 6.408858 TTTTATCGTGTCTGAGATGCTTTC 57.591 37.500 0.00 0.00 0.00 2.62
137 138 3.883830 ATCGTGTCTGAGATGCTTTCT 57.116 42.857 0.00 0.00 37.41 2.52
138 139 4.991153 ATCGTGTCTGAGATGCTTTCTA 57.009 40.909 0.00 0.00 33.74 2.10
139 140 4.991153 TCGTGTCTGAGATGCTTTCTAT 57.009 40.909 0.00 0.00 33.74 1.98
140 141 5.330455 TCGTGTCTGAGATGCTTTCTATT 57.670 39.130 0.00 0.00 33.74 1.73
141 142 5.724328 TCGTGTCTGAGATGCTTTCTATTT 58.276 37.500 0.00 0.00 33.74 1.40
142 143 6.166279 TCGTGTCTGAGATGCTTTCTATTTT 58.834 36.000 0.00 0.00 33.74 1.82
143 144 6.311445 TCGTGTCTGAGATGCTTTCTATTTTC 59.689 38.462 0.00 0.00 33.74 2.29
144 145 6.312426 CGTGTCTGAGATGCTTTCTATTTTCT 59.688 38.462 0.00 0.00 33.74 2.52
145 146 7.489435 CGTGTCTGAGATGCTTTCTATTTTCTA 59.511 37.037 0.00 0.00 33.74 2.10
146 147 9.323985 GTGTCTGAGATGCTTTCTATTTTCTAT 57.676 33.333 0.00 0.00 33.74 1.98
147 148 9.322773 TGTCTGAGATGCTTTCTATTTTCTATG 57.677 33.333 0.00 0.00 33.74 2.23
148 149 9.539825 GTCTGAGATGCTTTCTATTTTCTATGA 57.460 33.333 0.00 0.00 33.74 2.15
151 152 9.896645 TGAGATGCTTTCTATTTTCTATGAACT 57.103 29.630 0.00 0.00 33.74 3.01
206 207 7.849322 AAAAAGGGTCAACTAATAACCATGT 57.151 32.000 0.00 0.00 34.62 3.21
207 208 8.943594 AAAAAGGGTCAACTAATAACCATGTA 57.056 30.769 0.00 0.00 34.62 2.29
208 209 8.575649 AAAAGGGTCAACTAATAACCATGTAG 57.424 34.615 0.00 0.00 34.62 2.74
209 210 7.504926 AAGGGTCAACTAATAACCATGTAGA 57.495 36.000 0.00 0.00 34.62 2.59
210 211 6.885922 AGGGTCAACTAATAACCATGTAGAC 58.114 40.000 0.00 0.00 34.62 2.59
211 212 6.442564 AGGGTCAACTAATAACCATGTAGACA 59.557 38.462 0.00 0.00 34.62 3.41
212 213 7.127339 AGGGTCAACTAATAACCATGTAGACAT 59.873 37.037 0.00 0.00 36.96 3.06
229 230 4.678256 AGACATGTTCTACAAGGAGAGGA 58.322 43.478 0.00 0.00 30.17 3.71
230 231 5.087323 AGACATGTTCTACAAGGAGAGGAA 58.913 41.667 0.00 0.00 30.17 3.36
231 232 5.186797 AGACATGTTCTACAAGGAGAGGAAG 59.813 44.000 0.00 0.00 30.17 3.46
232 233 4.223923 ACATGTTCTACAAGGAGAGGAAGG 59.776 45.833 0.00 0.00 0.00 3.46
233 234 2.567615 TGTTCTACAAGGAGAGGAAGGC 59.432 50.000 0.00 0.00 0.00 4.35
234 235 2.567615 GTTCTACAAGGAGAGGAAGGCA 59.432 50.000 0.00 0.00 0.00 4.75
235 236 2.461695 TCTACAAGGAGAGGAAGGCAG 58.538 52.381 0.00 0.00 0.00 4.85
236 237 2.043115 TCTACAAGGAGAGGAAGGCAGA 59.957 50.000 0.00 0.00 0.00 4.26
237 238 0.980423 ACAAGGAGAGGAAGGCAGAC 59.020 55.000 0.00 0.00 0.00 3.51
238 239 0.108424 CAAGGAGAGGAAGGCAGACG 60.108 60.000 0.00 0.00 0.00 4.18
239 240 1.893919 AAGGAGAGGAAGGCAGACGC 61.894 60.000 0.00 0.00 37.44 5.19
240 241 2.650116 GGAGAGGAAGGCAGACGCA 61.650 63.158 0.00 0.00 41.24 5.24
241 242 1.519719 GAGAGGAAGGCAGACGCAT 59.480 57.895 0.00 0.00 41.24 4.73
242 243 0.529555 GAGAGGAAGGCAGACGCATC 60.530 60.000 0.00 0.00 41.24 3.91
243 244 0.975040 AGAGGAAGGCAGACGCATCT 60.975 55.000 0.00 0.00 41.24 2.90
244 245 0.107945 GAGGAAGGCAGACGCATCTT 60.108 55.000 0.00 0.00 41.24 2.40
245 246 0.392193 AGGAAGGCAGACGCATCTTG 60.392 55.000 0.00 0.00 41.24 3.02
246 247 0.674895 GGAAGGCAGACGCATCTTGT 60.675 55.000 0.00 0.00 41.24 3.16
247 248 0.723981 GAAGGCAGACGCATCTTGTC 59.276 55.000 0.00 0.00 41.24 3.18
248 249 0.674895 AAGGCAGACGCATCTTGTCC 60.675 55.000 0.00 0.00 41.24 4.02
249 250 1.375908 GGCAGACGCATCTTGTCCA 60.376 57.895 0.00 0.00 41.24 4.02
250 251 0.745845 GGCAGACGCATCTTGTCCAT 60.746 55.000 0.00 0.00 41.24 3.41
251 252 1.089920 GCAGACGCATCTTGTCCATT 58.910 50.000 0.00 0.00 37.04 3.16
252 253 1.470098 GCAGACGCATCTTGTCCATTT 59.530 47.619 0.00 0.00 37.04 2.32
253 254 2.730090 GCAGACGCATCTTGTCCATTTG 60.730 50.000 0.00 0.00 37.04 2.32
254 255 2.743664 CAGACGCATCTTGTCCATTTGA 59.256 45.455 0.00 0.00 37.04 2.69
255 256 3.005554 AGACGCATCTTGTCCATTTGAG 58.994 45.455 0.00 0.00 37.04 3.02
256 257 1.470098 ACGCATCTTGTCCATTTGAGC 59.530 47.619 0.00 0.00 0.00 4.26
257 258 1.741706 CGCATCTTGTCCATTTGAGCT 59.258 47.619 0.00 0.00 0.00 4.09
258 259 2.163010 CGCATCTTGTCCATTTGAGCTT 59.837 45.455 0.00 0.00 0.00 3.74
259 260 3.508762 GCATCTTGTCCATTTGAGCTTG 58.491 45.455 0.00 0.00 0.00 4.01
260 261 3.675228 GCATCTTGTCCATTTGAGCTTGG 60.675 47.826 0.00 0.00 0.00 3.61
261 262 3.507162 TCTTGTCCATTTGAGCTTGGA 57.493 42.857 0.46 0.46 39.70 3.53
262 263 4.038271 TCTTGTCCATTTGAGCTTGGAT 57.962 40.909 8.09 0.00 43.61 3.41
263 264 4.012374 TCTTGTCCATTTGAGCTTGGATC 58.988 43.478 8.09 3.65 43.61 3.36
264 265 2.726821 TGTCCATTTGAGCTTGGATCC 58.273 47.619 8.09 4.20 43.61 3.36
265 266 2.309755 TGTCCATTTGAGCTTGGATCCT 59.690 45.455 14.23 0.00 43.61 3.24
266 267 2.948315 GTCCATTTGAGCTTGGATCCTC 59.052 50.000 14.23 2.23 43.61 3.71
267 268 2.848694 TCCATTTGAGCTTGGATCCTCT 59.151 45.455 14.23 7.37 37.10 3.69
268 269 2.950309 CCATTTGAGCTTGGATCCTCTG 59.050 50.000 14.23 4.13 34.81 3.35
269 270 2.119801 TTTGAGCTTGGATCCTCTGC 57.880 50.000 14.23 13.90 0.00 4.26
270 271 1.283347 TTGAGCTTGGATCCTCTGCT 58.717 50.000 20.81 20.81 36.63 4.24
271 272 3.684693 GAGCTTGGATCCTCTGCTC 57.315 57.895 26.10 26.10 42.31 4.26
272 273 1.122227 GAGCTTGGATCCTCTGCTCT 58.878 55.000 29.52 14.38 44.52 4.09
273 274 1.485895 GAGCTTGGATCCTCTGCTCTT 59.514 52.381 29.52 12.56 44.52 2.85
274 275 1.485895 AGCTTGGATCCTCTGCTCTTC 59.514 52.381 14.23 0.00 0.00 2.87
275 276 1.474855 GCTTGGATCCTCTGCTCTTCC 60.475 57.143 14.23 0.00 0.00 3.46
276 277 1.836166 CTTGGATCCTCTGCTCTTCCA 59.164 52.381 14.23 0.00 34.74 3.53
277 278 1.956869 TGGATCCTCTGCTCTTCCAA 58.043 50.000 14.23 0.00 33.66 3.53
278 279 1.556911 TGGATCCTCTGCTCTTCCAAC 59.443 52.381 14.23 0.00 33.66 3.77
279 280 1.134250 GGATCCTCTGCTCTTCCAACC 60.134 57.143 3.84 0.00 0.00 3.77
280 281 1.836802 GATCCTCTGCTCTTCCAACCT 59.163 52.381 0.00 0.00 0.00 3.50
281 282 2.623418 TCCTCTGCTCTTCCAACCTA 57.377 50.000 0.00 0.00 0.00 3.08
282 283 2.180276 TCCTCTGCTCTTCCAACCTAC 58.820 52.381 0.00 0.00 0.00 3.18
283 284 1.208293 CCTCTGCTCTTCCAACCTACC 59.792 57.143 0.00 0.00 0.00 3.18
284 285 2.183679 CTCTGCTCTTCCAACCTACCT 58.816 52.381 0.00 0.00 0.00 3.08
285 286 3.366396 CTCTGCTCTTCCAACCTACCTA 58.634 50.000 0.00 0.00 0.00 3.08
286 287 3.097614 TCTGCTCTTCCAACCTACCTAC 58.902 50.000 0.00 0.00 0.00 3.18
287 288 2.168728 CTGCTCTTCCAACCTACCTACC 59.831 54.545 0.00 0.00 0.00 3.18
288 289 2.225547 TGCTCTTCCAACCTACCTACCT 60.226 50.000 0.00 0.00 0.00 3.08
289 290 3.012047 TGCTCTTCCAACCTACCTACCTA 59.988 47.826 0.00 0.00 0.00 3.08
290 291 3.384146 GCTCTTCCAACCTACCTACCTAC 59.616 52.174 0.00 0.00 0.00 3.18
291 292 4.607239 CTCTTCCAACCTACCTACCTACA 58.393 47.826 0.00 0.00 0.00 2.74
292 293 5.014534 TCTTCCAACCTACCTACCTACAA 57.985 43.478 0.00 0.00 0.00 2.41
293 294 4.774200 TCTTCCAACCTACCTACCTACAAC 59.226 45.833 0.00 0.00 0.00 3.32
294 295 4.130719 TCCAACCTACCTACCTACAACA 57.869 45.455 0.00 0.00 0.00 3.33
295 296 4.091549 TCCAACCTACCTACCTACAACAG 58.908 47.826 0.00 0.00 0.00 3.16
296 297 4.091549 CCAACCTACCTACCTACAACAGA 58.908 47.826 0.00 0.00 0.00 3.41
297 298 4.715297 CCAACCTACCTACCTACAACAGAT 59.285 45.833 0.00 0.00 0.00 2.90
298 299 5.189145 CCAACCTACCTACCTACAACAGATT 59.811 44.000 0.00 0.00 0.00 2.40
299 300 6.296259 CCAACCTACCTACCTACAACAGATTT 60.296 42.308 0.00 0.00 0.00 2.17
300 301 7.093201 CCAACCTACCTACCTACAACAGATTTA 60.093 40.741 0.00 0.00 0.00 1.40
301 302 8.483758 CAACCTACCTACCTACAACAGATTTAT 58.516 37.037 0.00 0.00 0.00 1.40
302 303 8.247666 ACCTACCTACCTACAACAGATTTATC 57.752 38.462 0.00 0.00 0.00 1.75
303 304 8.066247 ACCTACCTACCTACAACAGATTTATCT 58.934 37.037 0.00 0.00 37.72 1.98
319 320 7.544622 AGATTTATCTGTACTACGAAGCAACA 58.455 34.615 0.00 0.00 35.42 3.33
327 328 5.688621 TGTACTACGAAGCAACAACTACAAG 59.311 40.000 0.00 0.00 0.00 3.16
335 336 0.539669 AACAACTACAAGCCCCAGCC 60.540 55.000 0.00 0.00 41.25 4.85
338 339 3.017581 CTACAAGCCCCAGCCCCT 61.018 66.667 0.00 0.00 41.25 4.79
339 340 3.015145 TACAAGCCCCAGCCCCTC 61.015 66.667 0.00 0.00 41.25 4.30
340 341 3.579451 TACAAGCCCCAGCCCCTCT 62.579 63.158 0.00 0.00 41.25 3.69
427 429 3.075884 GTTCTACGATCCTCCGCTATCT 58.924 50.000 0.00 0.00 0.00 1.98
446 448 3.560105 TCTGTCTCGTCCTCATCATCAT 58.440 45.455 0.00 0.00 0.00 2.45
468 470 2.919229 CAAAGTTCCGAATTGCATCTGC 59.081 45.455 0.00 0.00 42.50 4.26
534 536 2.852449 TCAGATCCTTGTAGCCCCAAAT 59.148 45.455 0.00 0.00 0.00 2.32
539 541 3.815809 TCCTTGTAGCCCCAAATAATCG 58.184 45.455 0.00 0.00 0.00 3.34
548 550 3.684413 GCCCCAAATAATCGTCCTTCTCA 60.684 47.826 0.00 0.00 0.00 3.27
554 556 0.107945 AATCGTCCTTCTCAGGCAGC 60.108 55.000 0.00 0.00 40.58 5.25
559 561 2.659016 CTTCTCAGGCAGCGTCCA 59.341 61.111 0.26 0.00 0.00 4.02
561 563 2.849120 CTTCTCAGGCAGCGTCCAGG 62.849 65.000 0.26 0.00 0.00 4.45
716 726 2.437897 CTCAACCTGCCCTTGCCT 59.562 61.111 0.00 0.00 36.33 4.75
719 729 1.676967 CAACCTGCCCTTGCCTCTC 60.677 63.158 0.00 0.00 36.33 3.20
913 941 1.148157 CCTATCACGACGGCAAGCTG 61.148 60.000 0.00 0.00 0.00 4.24
968 996 2.333225 CCGCAGCGAGCCTAGTAG 59.667 66.667 18.75 0.00 41.38 2.57
1216 1255 3.064820 TCAAGCTTCGTGTTCTTGGTTTC 59.935 43.478 0.00 0.00 38.13 2.78
1219 1258 3.312697 AGCTTCGTGTTCTTGGTTTCTTC 59.687 43.478 0.00 0.00 0.00 2.87
1220 1259 3.312697 GCTTCGTGTTCTTGGTTTCTTCT 59.687 43.478 0.00 0.00 0.00 2.85
1221 1260 4.201920 GCTTCGTGTTCTTGGTTTCTTCTT 60.202 41.667 0.00 0.00 0.00 2.52
1222 1261 5.479716 TTCGTGTTCTTGGTTTCTTCTTC 57.520 39.130 0.00 0.00 0.00 2.87
1324 1363 9.546428 CTACACCATGAACTGAATATGATTGTA 57.454 33.333 0.00 0.00 0.00 2.41
1414 1453 6.099341 CCTAAACAAGGCCACAATTATTGTC 58.901 40.000 7.71 0.00 39.38 3.18
1454 1493 2.665165 TGTCCATTTGGCTCTTGTTGT 58.335 42.857 0.00 0.00 34.44 3.32
1492 1531 3.992643 AGCTAGCTAGATGCACATCTTG 58.007 45.455 25.15 16.26 45.31 3.02
1495 1534 4.683781 GCTAGCTAGATGCACATCTTGTAC 59.316 45.833 25.15 5.31 45.31 2.90
1496 1535 5.508825 GCTAGCTAGATGCACATCTTGTACT 60.509 44.000 25.15 11.42 45.31 2.73
1497 1536 6.294231 GCTAGCTAGATGCACATCTTGTACTA 60.294 42.308 25.15 11.85 45.31 1.82
1508 1549 8.012809 TGCACATCTTGTACTAATTTGTTTACG 58.987 33.333 0.00 0.00 0.00 3.18
1564 1605 5.713025 ACGTACGTACATGTCCACTAATTT 58.287 37.500 21.41 0.00 0.00 1.82
1709 1750 3.377439 TGAAATCGTCCGGATATGAACG 58.623 45.455 7.81 6.02 34.08 3.95
1763 1804 6.435277 CCCCCTCCATTCACAAATATAAGATG 59.565 42.308 0.00 0.00 0.00 2.90
1766 1807 8.917088 CCCTCCATTCACAAATATAAGATGTTT 58.083 33.333 0.00 0.00 0.00 2.83
1804 1845 7.650104 TGATTTGAATGTATATAGACGACGCAA 59.350 33.333 0.00 0.00 0.00 4.85
1820 1861 4.497608 CGACGCAATTTAGTGTGTTTGTTT 59.502 37.500 0.00 0.00 42.18 2.83
1834 1875 9.950680 AGTGTGTTTGTTTACTCATTTTATCTG 57.049 29.630 0.00 0.00 0.00 2.90
1836 1877 9.944663 TGTGTTTGTTTACTCATTTTATCTGTC 57.055 29.630 0.00 0.00 0.00 3.51
1864 1905 9.902196 AAAAAGTCTTACATTATAAAACGGTGG 57.098 29.630 0.00 0.00 0.00 4.61
1914 2300 2.987413 TCCTAATGCACGCAAACAAG 57.013 45.000 0.00 0.00 0.00 3.16
1953 2339 9.434420 TGCATTGAAATACATCATCGATATACA 57.566 29.630 0.00 0.00 0.00 2.29
1954 2340 9.911980 GCATTGAAATACATCATCGATATACAG 57.088 33.333 0.00 0.00 0.00 2.74
2014 2400 3.509967 GGACCATTAGTTTTGGAAGGTGG 59.490 47.826 0.00 0.00 37.69 4.61
2123 2509 2.287977 AGGACTAAGTTGGGTTTGGC 57.712 50.000 0.00 0.00 0.00 4.52
2165 2551 1.660607 CGAGGATTGTTCCATGTGTCG 59.339 52.381 0.00 0.00 45.30 4.35
2324 2711 3.005472 TCTCCACAGTTGTGTACAGTAGC 59.995 47.826 11.02 0.00 44.21 3.58
2394 2784 7.818930 CCTTGTTAACATGAAATTGGCATAACT 59.181 33.333 20.00 0.00 0.00 2.24
2400 2790 6.567050 ACATGAAATTGGCATAACTAAGCAG 58.433 36.000 0.00 0.00 0.00 4.24
2418 2808 5.756195 AGCAGTAACGGTCATATTACGTA 57.244 39.130 0.00 0.00 40.31 3.57
2419 2809 6.135290 AGCAGTAACGGTCATATTACGTAA 57.865 37.500 11.02 11.02 40.31 3.18
2420 2810 6.204359 AGCAGTAACGGTCATATTACGTAAG 58.796 40.000 14.25 0.38 40.31 2.34
2435 2825 2.054363 CGTAAGTGCTGTCAGTGTGAG 58.946 52.381 0.93 0.00 0.00 3.51
2492 2891 7.308348 CCTGAAAACACACACGGAAATATTACT 60.308 37.037 0.00 0.00 0.00 2.24
2495 2894 5.416271 ACACACACGGAAATATTACTCCT 57.584 39.130 4.96 0.00 0.00 3.69
2513 2912 6.347859 ACTCCTTCCGATCCATATTACTTC 57.652 41.667 0.00 0.00 0.00 3.01
2514 2913 6.078664 ACTCCTTCCGATCCATATTACTTCT 58.921 40.000 0.00 0.00 0.00 2.85
2515 2914 6.209788 ACTCCTTCCGATCCATATTACTTCTC 59.790 42.308 0.00 0.00 0.00 2.87
2516 2915 5.183331 TCCTTCCGATCCATATTACTTCTCG 59.817 44.000 0.00 0.00 0.00 4.04
2517 2916 4.436242 TCCGATCCATATTACTTCTCGC 57.564 45.455 0.00 0.00 0.00 5.03
2518 2917 4.079970 TCCGATCCATATTACTTCTCGCT 58.920 43.478 0.00 0.00 0.00 4.93
2519 2918 4.523173 TCCGATCCATATTACTTCTCGCTT 59.477 41.667 0.00 0.00 0.00 4.68
2520 2919 4.623167 CCGATCCATATTACTTCTCGCTTG 59.377 45.833 0.00 0.00 0.00 4.01
2521 2920 4.090642 CGATCCATATTACTTCTCGCTTGC 59.909 45.833 0.00 0.00 0.00 4.01
2522 2921 4.400529 TCCATATTACTTCTCGCTTGCA 57.599 40.909 0.00 0.00 0.00 4.08
2529 2928 1.357258 CTTCTCGCTTGCATCGCAGT 61.357 55.000 8.90 0.00 40.61 4.40
2539 2938 4.641954 CTTGCATCGCAGTTTTAGTACAG 58.358 43.478 0.00 0.00 40.61 2.74
2602 3004 3.975982 TGATGGATGGGAAGCTTGATCTA 59.024 43.478 2.10 0.78 0.00 1.98
2827 3229 3.390521 ATCGCCTTCCACGCCTCA 61.391 61.111 0.00 0.00 0.00 3.86
3400 3802 3.411517 CTTGTCCCCGCCTCCCAT 61.412 66.667 0.00 0.00 0.00 4.00
3463 3865 1.073025 GCAGGACACCACCATGACA 59.927 57.895 0.00 0.00 0.00 3.58
3472 3874 0.397941 CCACCATGACACTGTCACCT 59.602 55.000 14.20 0.00 45.65 4.00
3634 4036 0.952497 TCGTCGACGAAGCAGGTACT 60.952 55.000 36.25 0.00 46.30 2.73
3636 4038 0.179169 GTCGACGAAGCAGGTACTCC 60.179 60.000 0.00 0.00 34.60 3.85
3637 4039 0.607217 TCGACGAAGCAGGTACTCCA 60.607 55.000 0.00 0.00 34.60 3.86
3638 4040 0.456312 CGACGAAGCAGGTACTCCAC 60.456 60.000 0.00 0.00 34.60 4.02
3639 4041 0.889306 GACGAAGCAGGTACTCCACT 59.111 55.000 0.00 0.00 34.60 4.00
3640 4042 1.272769 GACGAAGCAGGTACTCCACTT 59.727 52.381 0.00 0.00 34.60 3.16
3643 4045 3.139077 CGAAGCAGGTACTCCACTTTTT 58.861 45.455 0.00 0.00 34.60 1.94
3652 4054 2.927028 ACTCCACTTTTTAGCCGTTGT 58.073 42.857 0.00 0.00 0.00 3.32
3655 4057 5.067954 ACTCCACTTTTTAGCCGTTGTAAT 58.932 37.500 0.00 0.00 0.00 1.89
3702 4116 3.194005 TGGAAGTCTTGACCTGACAAC 57.806 47.619 0.00 0.00 36.94 3.32
3716 4130 3.001939 CCTGACAACGTGACAAGGTTAAC 59.998 47.826 0.00 0.00 33.22 2.01
4043 4457 2.360350 CAACATCAGGTGGCGGCT 60.360 61.111 11.43 0.00 0.00 5.52
4077 4491 5.507650 GGTTCCAAGGTGCGTAATTTTAACA 60.508 40.000 0.00 0.00 0.00 2.41
4165 4584 5.000012 AGTAGTTAGAAGACCGATTGCAG 58.000 43.478 0.00 0.00 0.00 4.41
4186 4605 6.002082 GCAGAGGTCGGGGTTAATTAATATT 58.998 40.000 0.31 0.00 0.00 1.28
4191 4610 6.103649 AGGTCGGGGTTAATTAATATTCCCTT 59.896 38.462 16.98 4.94 35.65 3.95
4259 4678 5.873164 GTGCGATAAGAAGTTTTTAGAGGGA 59.127 40.000 0.00 0.00 0.00 4.20
4271 4690 7.569240 AGTTTTTAGAGGGATATGACAGGAAG 58.431 38.462 0.00 0.00 0.00 3.46
4273 4692 8.483758 GTTTTTAGAGGGATATGACAGGAAGTA 58.516 37.037 0.00 0.00 0.00 2.24
4315 4779 6.074088 CGATTTAGCTAGAGCACTATGTTTGG 60.074 42.308 4.01 0.00 45.16 3.28
4316 4780 3.550437 AGCTAGAGCACTATGTTTGGG 57.450 47.619 4.01 0.00 45.16 4.12
4318 4782 2.092914 GCTAGAGCACTATGTTTGGGGT 60.093 50.000 0.00 0.00 41.59 4.95
4333 4797 8.943594 ATGTTTGGGGTCTAACTGTTTATAAA 57.056 30.769 0.00 0.00 31.54 1.40
4413 4877 8.099704 CACGTTTGTTTAAACTTTTGCTTAGAC 58.900 33.333 18.72 1.63 43.13 2.59
4415 4879 8.099704 CGTTTGTTTAAACTTTTGCTTAGACAC 58.900 33.333 18.72 0.00 43.13 3.67
4416 4880 8.917655 GTTTGTTTAAACTTTTGCTTAGACACA 58.082 29.630 18.72 0.00 42.26 3.72
4464 4928 5.983720 GCATATTTGAAGATCATGCAAAGCT 59.016 36.000 6.96 0.00 41.25 3.74
4466 4930 7.326305 GCATATTTGAAGATCATGCAAAGCTAG 59.674 37.037 6.96 0.00 41.25 3.42
4467 4931 4.627611 TTGAAGATCATGCAAAGCTAGC 57.372 40.909 6.62 6.62 0.00 3.42
4469 4933 4.011698 TGAAGATCATGCAAAGCTAGCAA 58.988 39.130 18.83 3.28 46.27 3.91
4470 4934 4.643334 TGAAGATCATGCAAAGCTAGCAAT 59.357 37.500 18.83 7.71 46.27 3.56
4471 4935 5.824097 TGAAGATCATGCAAAGCTAGCAATA 59.176 36.000 18.83 8.94 46.27 1.90
4472 4936 6.489022 TGAAGATCATGCAAAGCTAGCAATAT 59.511 34.615 18.83 12.67 46.27 1.28
4481 4945 8.087982 TGCAAAGCTAGCAATATGTTATACTC 57.912 34.615 18.83 0.00 39.39 2.59
4482 4946 7.933577 TGCAAAGCTAGCAATATGTTATACTCT 59.066 33.333 18.83 0.00 39.39 3.24
4484 4948 7.897575 AAGCTAGCAATATGTTATACTCTGC 57.102 36.000 18.83 0.00 0.00 4.26
4503 4967 5.144100 TCTGCCCCAAAATTCTTGTCTTAA 58.856 37.500 0.00 0.00 0.00 1.85
4587 5051 9.300681 AGACAAATCTATGACAAGAATTTTGGA 57.699 29.630 12.84 0.00 33.04 3.53
4600 5064 9.675464 ACAAGAATTTTGGAACGGAGTAATATA 57.325 29.630 0.00 0.00 45.00 0.86
4661 5158 9.606631 ATCACACTTTATTTAGAAGAGGATGTC 57.393 33.333 0.00 0.00 0.00 3.06
4733 5230 2.910688 AGATTTCTCACCACGTGTGT 57.089 45.000 15.65 9.31 45.61 3.72
4753 5250 5.744819 TGTGTCATGTGGTATATAAACGTCG 59.255 40.000 0.00 0.00 0.00 5.12
4769 5266 2.821969 ACGTCGGGTATGTGAAAGTAGT 59.178 45.455 0.00 0.00 0.00 2.73
4776 5273 8.408601 GTCGGGTATGTGAAAGTAGTCTTATTA 58.591 37.037 0.00 0.00 33.09 0.98
4935 5433 8.227791 ACATAAGTATTAAGCACAAACGTGAAG 58.772 33.333 0.00 0.00 32.88 3.02
5005 5503 5.063944 AGACGTTGATACAATGTCAGATTGC 59.936 40.000 27.09 9.24 38.34 3.56
5073 5571 4.357918 AGACCACACTTTAGAAGCATGT 57.642 40.909 0.00 0.00 0.00 3.21
5083 5581 7.880195 ACACTTTAGAAGCATGTAGTCAGATTT 59.120 33.333 0.00 0.00 0.00 2.17
5247 5747 9.953565 AGTACAATTTTAGTTGCTAGGAATACA 57.046 29.630 0.00 0.00 32.32 2.29
5276 5776 9.401058 ACATAGTTACATACTAGAAAGTACGGT 57.599 33.333 0.00 0.00 42.44 4.83
5335 5835 6.743575 AAGTAATCCAAGATTGCACACTAC 57.256 37.500 7.91 0.00 0.00 2.73
5336 5836 5.804639 AGTAATCCAAGATTGCACACTACA 58.195 37.500 7.91 0.00 0.00 2.74
5363 5863 7.189693 TTCTAAATTAGACTGCACACAAGTG 57.810 36.000 1.61 0.00 40.67 3.16
5425 5925 7.537306 GTCATGTTATATTTGTGTGTTGTGGAC 59.463 37.037 0.00 0.00 0.00 4.02
5491 5991 2.012673 GAAGAAGCGATCAAGGCACAT 58.987 47.619 0.00 0.00 0.00 3.21
5662 6173 4.170468 ACGATAGAATTCCCAGCCAATT 57.830 40.909 0.65 0.00 41.38 2.32
5720 6231 4.495349 GCATCATCACAAAAGATGGAGTCG 60.495 45.833 0.00 0.00 44.30 4.18
5852 6366 4.851639 AGAGAGGGCACTAACATGAAAT 57.148 40.909 0.00 0.00 0.00 2.17
5932 6446 4.542662 CATGCTCTTACATGCTTACACC 57.457 45.455 0.00 0.00 40.89 4.16
6064 6584 5.166398 AGGTCTGTAACGATTTTTCCGTAG 58.834 41.667 0.00 0.00 39.57 3.51
6067 6587 6.033937 GGTCTGTAACGATTTTTCCGTAGTAC 59.966 42.308 0.00 0.00 39.57 2.73
6132 6653 6.232139 TGATTAGCATGCATATCAAAGACG 57.768 37.500 24.09 0.00 0.00 4.18
6175 6696 8.945193 ACATACTGGAATTTATGTACCTATGGT 58.055 33.333 0.00 0.00 37.19 3.55
6191 6712 5.126222 ACCTATGGTCTATGTCTATGCATCG 59.874 44.000 0.19 0.00 0.00 3.84
6209 6758 3.058160 GCGACTGTGGCCATTGCT 61.058 61.111 9.72 0.00 37.74 3.91
6318 7033 5.389642 AGCACATATTTTATGTCACGTCG 57.610 39.130 0.00 0.00 0.00 5.12
6388 7108 1.672881 GGACAGCATAATGGAGCACAC 59.327 52.381 0.00 0.00 0.00 3.82
6398 7118 2.489938 TGGAGCACACATTTCCCTAC 57.510 50.000 0.00 0.00 0.00 3.18
6472 7193 1.507141 CGTGTCCTCTTGTGGTTGGC 61.507 60.000 0.00 0.00 0.00 4.52
6620 7341 1.306141 AGATTCGGCCCAGGAGACA 60.306 57.895 0.00 0.00 0.00 3.41
7051 7780 4.218417 AGGTGTGTGGTGATTAATTCTTGC 59.782 41.667 0.00 0.00 0.00 4.01
7077 7811 5.939296 TCGATCGTGTGTACATATATACCCA 59.061 40.000 15.94 0.00 0.00 4.51
7083 7817 4.773149 TGTGTACATATATACCCATGCGGA 59.227 41.667 0.00 0.00 34.64 5.54
7157 7891 9.696572 ACGGAACTATCCATGTACAGTATATAT 57.303 33.333 0.33 0.00 46.97 0.86
7205 7939 5.588845 ACCTGAACCAATTAAATGGATCCA 58.411 37.500 18.88 18.88 43.54 3.41
7207 7941 6.098695 ACCTGAACCAATTAAATGGATCCATG 59.901 38.462 27.97 15.36 43.54 3.66
7208 7942 6.098695 CCTGAACCAATTAAATGGATCCATGT 59.901 38.462 27.97 24.55 43.54 3.21
7258 9233 3.550030 GGACACGTTTAGCAAGCAAACAT 60.550 43.478 15.21 3.33 35.97 2.71
7259 9234 3.371168 ACACGTTTAGCAAGCAAACATG 58.629 40.909 15.21 13.42 35.72 3.21
7260 9235 3.181491 ACACGTTTAGCAAGCAAACATGT 60.181 39.130 12.45 12.45 37.44 3.21
7261 9236 3.180189 CACGTTTAGCAAGCAAACATGTG 59.820 43.478 0.00 12.62 35.97 3.21
7262 9237 3.181491 ACGTTTAGCAAGCAAACATGTGT 60.181 39.130 0.00 0.00 35.97 3.72
7263 9238 3.796178 CGTTTAGCAAGCAAACATGTGTT 59.204 39.130 0.00 0.00 40.50 3.32
7264 9239 4.973051 CGTTTAGCAAGCAAACATGTGTTA 59.027 37.500 0.00 0.00 37.25 2.41
7265 9240 5.115472 CGTTTAGCAAGCAAACATGTGTTAG 59.885 40.000 0.00 0.00 37.25 2.34
7266 9241 3.017265 AGCAAGCAAACATGTGTTAGC 57.983 42.857 0.00 1.24 37.25 3.09
7267 9242 1.715519 GCAAGCAAACATGTGTTAGCG 59.284 47.619 0.00 0.00 37.25 4.26
7268 9243 1.715519 CAAGCAAACATGTGTTAGCGC 59.284 47.619 0.00 0.00 37.25 5.92
7269 9244 0.240945 AGCAAACATGTGTTAGCGCC 59.759 50.000 2.29 0.00 37.25 6.53
7270 9245 0.732538 GCAAACATGTGTTAGCGCCC 60.733 55.000 2.29 0.00 37.25 6.13
7271 9246 0.881118 CAAACATGTGTTAGCGCCCT 59.119 50.000 2.29 0.00 37.25 5.19
7272 9247 1.269448 CAAACATGTGTTAGCGCCCTT 59.731 47.619 2.29 0.00 37.25 3.95
7273 9248 0.881118 AACATGTGTTAGCGCCCTTG 59.119 50.000 2.29 0.00 36.32 3.61
7274 9249 0.960364 ACATGTGTTAGCGCCCTTGG 60.960 55.000 2.29 0.00 0.00 3.61
7275 9250 0.676466 CATGTGTTAGCGCCCTTGGA 60.676 55.000 2.29 0.00 0.00 3.53
7276 9251 0.676782 ATGTGTTAGCGCCCTTGGAC 60.677 55.000 2.29 0.00 0.00 4.02
7277 9252 2.047655 TGTTAGCGCCCTTGGACG 60.048 61.111 2.29 0.00 0.00 4.79
7278 9253 2.818274 GTTAGCGCCCTTGGACGG 60.818 66.667 2.29 0.00 0.00 4.79
7279 9254 2.998480 TTAGCGCCCTTGGACGGA 60.998 61.111 2.29 0.00 0.00 4.69
7304 9304 1.119684 GTTGGGGCCAGTTCTTTTGT 58.880 50.000 4.39 0.00 0.00 2.83
7339 9342 0.185175 AAACCGCCTCCTCACCTTTT 59.815 50.000 0.00 0.00 0.00 2.27
7350 9353 4.735369 TCCTCACCTTTTTCAATAAGCCA 58.265 39.130 0.00 0.00 0.00 4.75
7351 9354 5.332743 TCCTCACCTTTTTCAATAAGCCAT 58.667 37.500 0.00 0.00 0.00 4.40
7527 9531 1.546029 CTGGCCCTTAGTGAAAAAGCC 59.454 52.381 0.00 0.00 36.36 4.35
7598 9602 0.318360 AATCGTGTCGTTCGTGCAGA 60.318 50.000 0.00 0.00 0.00 4.26
7635 9639 0.848053 ACTCGGGTTCCTTTTTCCCA 59.152 50.000 0.00 0.00 41.12 4.37
7646 9650 0.470080 TTTTTCCCATCCCCACGCAA 60.470 50.000 0.00 0.00 0.00 4.85
7700 9704 1.001760 GCACACCTCCTCTCCCCTA 59.998 63.158 0.00 0.00 0.00 3.53
7709 9713 4.858519 ACCTCCTCTCCCCTAAATTTCTTT 59.141 41.667 0.00 0.00 0.00 2.52
7746 9750 5.754543 AACGAAAAAGATAACCACCGAAA 57.245 34.783 0.00 0.00 0.00 3.46
7749 9753 5.297527 ACGAAAAAGATAACCACCGAAAGTT 59.702 36.000 0.00 0.00 0.00 2.66
7773 9778 0.328926 TTTAAGGGTTCCCGCCGAAT 59.671 50.000 1.91 0.00 31.67 3.34
7900 9906 1.760479 TTCCTTTCCCTCGCCGACAA 61.760 55.000 0.00 0.00 0.00 3.18
7918 9924 2.174639 ACAACCATCAGTTCCCACTCAA 59.825 45.455 0.00 0.00 36.18 3.02
7951 9957 2.130193 CTCATTCCCCTCAATCCTCCA 58.870 52.381 0.00 0.00 0.00 3.86
7952 9958 2.511218 CTCATTCCCCTCAATCCTCCAA 59.489 50.000 0.00 0.00 0.00 3.53
7954 9960 3.336391 TCATTCCCCTCAATCCTCCAAAA 59.664 43.478 0.00 0.00 0.00 2.44
7963 9969 5.188359 CCTCAATCCTCCAAAATCAACCAAT 59.812 40.000 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.618640 GCTCGAAAGTCTCCGTGCAC 61.619 60.000 6.82 6.82 42.54 4.57
1 2 1.372997 GCTCGAAAGTCTCCGTGCA 60.373 57.895 13.33 0.00 42.54 4.57
2 3 1.080434 AGCTCGAAAGTCTCCGTGC 60.080 57.895 11.37 11.37 43.08 5.34
3 4 0.039074 ACAGCTCGAAAGTCTCCGTG 60.039 55.000 0.00 0.00 0.00 4.94
4 5 0.241481 GACAGCTCGAAAGTCTCCGT 59.759 55.000 4.77 0.00 0.00 4.69
5 6 0.241213 TGACAGCTCGAAAGTCTCCG 59.759 55.000 11.36 0.00 33.56 4.63
6 7 2.663826 ATGACAGCTCGAAAGTCTCC 57.336 50.000 11.36 0.00 33.56 3.71
7 8 3.366422 GTCAATGACAGCTCGAAAGTCTC 59.634 47.826 8.74 0.00 33.56 3.36
8 9 3.243873 TGTCAATGACAGCTCGAAAGTCT 60.244 43.478 12.63 0.00 37.67 3.24
9 10 3.059884 TGTCAATGACAGCTCGAAAGTC 58.940 45.455 12.63 5.00 37.67 3.01
10 11 3.111853 TGTCAATGACAGCTCGAAAGT 57.888 42.857 12.63 0.00 37.67 2.66
11 12 4.024556 ACTTTGTCAATGACAGCTCGAAAG 60.025 41.667 16.10 16.61 43.69 2.62
12 13 3.876914 ACTTTGTCAATGACAGCTCGAAA 59.123 39.130 16.10 6.02 43.69 3.46
13 14 3.466836 ACTTTGTCAATGACAGCTCGAA 58.533 40.909 16.10 6.71 43.69 3.71
14 15 3.111853 ACTTTGTCAATGACAGCTCGA 57.888 42.857 16.10 0.00 43.69 4.04
15 16 4.990543 TTACTTTGTCAATGACAGCTCG 57.009 40.909 16.10 8.56 43.69 5.03
16 17 5.149977 GCTTTACTTTGTCAATGACAGCTC 58.850 41.667 16.10 0.00 43.69 4.09
17 18 4.022849 GGCTTTACTTTGTCAATGACAGCT 60.023 41.667 16.10 5.61 43.69 4.24
18 19 4.229876 GGCTTTACTTTGTCAATGACAGC 58.770 43.478 16.10 13.50 43.69 4.40
19 20 5.437289 TGGCTTTACTTTGTCAATGACAG 57.563 39.130 16.10 8.51 43.69 3.51
20 21 4.261572 GCTGGCTTTACTTTGTCAATGACA 60.262 41.667 12.63 12.63 41.09 3.58
21 22 4.022849 AGCTGGCTTTACTTTGTCAATGAC 60.023 41.667 6.41 6.41 0.00 3.06
22 23 4.144297 AGCTGGCTTTACTTTGTCAATGA 58.856 39.130 5.52 0.00 0.00 2.57
23 24 4.479619 GAGCTGGCTTTACTTTGTCAATG 58.520 43.478 0.00 0.00 0.00 2.82
24 25 3.507622 GGAGCTGGCTTTACTTTGTCAAT 59.492 43.478 0.00 0.00 0.00 2.57
25 26 2.884639 GGAGCTGGCTTTACTTTGTCAA 59.115 45.455 0.00 0.00 0.00 3.18
26 27 2.504367 GGAGCTGGCTTTACTTTGTCA 58.496 47.619 0.00 0.00 0.00 3.58
27 28 1.464997 CGGAGCTGGCTTTACTTTGTC 59.535 52.381 0.00 0.00 0.00 3.18
28 29 1.523758 CGGAGCTGGCTTTACTTTGT 58.476 50.000 0.00 0.00 0.00 2.83
29 30 0.804989 CCGGAGCTGGCTTTACTTTG 59.195 55.000 0.00 0.00 0.00 2.77
30 31 0.400594 ACCGGAGCTGGCTTTACTTT 59.599 50.000 9.46 0.00 0.00 2.66
31 32 1.207329 CTACCGGAGCTGGCTTTACTT 59.793 52.381 9.46 0.00 0.00 2.24
32 33 0.824759 CTACCGGAGCTGGCTTTACT 59.175 55.000 9.46 0.00 0.00 2.24
33 34 0.179081 CCTACCGGAGCTGGCTTTAC 60.179 60.000 9.46 0.00 0.00 2.01
34 35 1.335132 CCCTACCGGAGCTGGCTTTA 61.335 60.000 9.46 0.00 0.00 1.85
35 36 2.670148 CCCTACCGGAGCTGGCTTT 61.670 63.158 9.46 0.00 0.00 3.51
36 37 3.083997 CCCTACCGGAGCTGGCTT 61.084 66.667 9.46 0.00 0.00 4.35
39 40 2.840102 CTCCCCTACCGGAGCTGG 60.840 72.222 9.46 3.09 43.01 4.85
46 47 3.597728 GAGCTCGCTCCCCTACCG 61.598 72.222 7.68 0.00 37.11 4.02
47 48 3.597728 CGAGCTCGCTCCCCTACC 61.598 72.222 25.07 0.00 39.77 3.18
48 49 2.829458 ACGAGCTCGCTCCCCTAC 60.829 66.667 34.83 0.00 44.43 3.18
49 50 2.516460 GACGAGCTCGCTCCCCTA 60.516 66.667 34.83 0.00 44.43 3.53
54 55 4.838486 CACCGGACGAGCTCGCTC 62.838 72.222 34.83 27.54 44.43 5.03
58 59 4.803426 CTGCCACCGGACGAGCTC 62.803 72.222 9.46 2.73 0.00 4.09
60 61 3.701604 CTACTGCCACCGGACGAGC 62.702 68.421 9.46 5.55 0.00 5.03
61 62 2.341101 ACTACTGCCACCGGACGAG 61.341 63.158 9.46 0.06 0.00 4.18
62 63 2.282674 ACTACTGCCACCGGACGA 60.283 61.111 9.46 0.00 0.00 4.20
63 64 2.126071 CACTACTGCCACCGGACG 60.126 66.667 9.46 0.00 0.00 4.79
64 65 0.669625 GAACACTACTGCCACCGGAC 60.670 60.000 9.46 0.00 0.00 4.79
65 66 1.116536 TGAACACTACTGCCACCGGA 61.117 55.000 9.46 0.00 0.00 5.14
66 67 0.036388 ATGAACACTACTGCCACCGG 60.036 55.000 0.00 0.00 0.00 5.28
67 68 1.732259 GAATGAACACTACTGCCACCG 59.268 52.381 0.00 0.00 0.00 4.94
68 69 1.732259 CGAATGAACACTACTGCCACC 59.268 52.381 0.00 0.00 0.00 4.61
69 70 1.732259 CCGAATGAACACTACTGCCAC 59.268 52.381 0.00 0.00 0.00 5.01
70 71 1.346395 ACCGAATGAACACTACTGCCA 59.654 47.619 0.00 0.00 0.00 4.92
71 72 1.732259 CACCGAATGAACACTACTGCC 59.268 52.381 0.00 0.00 0.00 4.85
72 73 1.732259 CCACCGAATGAACACTACTGC 59.268 52.381 0.00 0.00 0.00 4.40
73 74 2.993899 GACCACCGAATGAACACTACTG 59.006 50.000 0.00 0.00 0.00 2.74
74 75 2.897969 AGACCACCGAATGAACACTACT 59.102 45.455 0.00 0.00 0.00 2.57
75 76 3.251571 GAGACCACCGAATGAACACTAC 58.748 50.000 0.00 0.00 0.00 2.73
76 77 2.894765 TGAGACCACCGAATGAACACTA 59.105 45.455 0.00 0.00 0.00 2.74
77 78 1.691976 TGAGACCACCGAATGAACACT 59.308 47.619 0.00 0.00 0.00 3.55
78 79 2.069273 CTGAGACCACCGAATGAACAC 58.931 52.381 0.00 0.00 0.00 3.32
79 80 1.967779 TCTGAGACCACCGAATGAACA 59.032 47.619 0.00 0.00 0.00 3.18
80 81 2.743636 TCTGAGACCACCGAATGAAC 57.256 50.000 0.00 0.00 0.00 3.18
81 82 3.515502 AGATTCTGAGACCACCGAATGAA 59.484 43.478 0.00 0.00 0.00 2.57
82 83 3.099905 AGATTCTGAGACCACCGAATGA 58.900 45.455 0.00 0.00 0.00 2.57
83 84 3.533606 AGATTCTGAGACCACCGAATG 57.466 47.619 0.00 0.00 0.00 2.67
84 85 3.515502 TCAAGATTCTGAGACCACCGAAT 59.484 43.478 0.00 0.00 0.00 3.34
85 86 2.897326 TCAAGATTCTGAGACCACCGAA 59.103 45.455 0.00 0.00 0.00 4.30
86 87 2.525368 TCAAGATTCTGAGACCACCGA 58.475 47.619 0.00 0.00 0.00 4.69
87 88 3.193263 CATCAAGATTCTGAGACCACCG 58.807 50.000 0.00 0.00 0.00 4.94
88 89 4.213564 ACATCAAGATTCTGAGACCACC 57.786 45.455 0.00 0.00 0.00 4.61
89 90 7.856145 AATTACATCAAGATTCTGAGACCAC 57.144 36.000 0.00 0.00 0.00 4.16
90 91 8.868522 AAAATTACATCAAGATTCTGAGACCA 57.131 30.769 0.00 0.00 0.00 4.02
101 102 9.430623 TCAGACACGATAAAAATTACATCAAGA 57.569 29.630 0.00 0.00 0.00 3.02
102 103 9.694520 CTCAGACACGATAAAAATTACATCAAG 57.305 33.333 0.00 0.00 0.00 3.02
103 104 9.430623 TCTCAGACACGATAAAAATTACATCAA 57.569 29.630 0.00 0.00 0.00 2.57
104 105 8.996024 TCTCAGACACGATAAAAATTACATCA 57.004 30.769 0.00 0.00 0.00 3.07
105 106 9.855361 CATCTCAGACACGATAAAAATTACATC 57.145 33.333 0.00 0.00 0.00 3.06
106 107 8.338259 GCATCTCAGACACGATAAAAATTACAT 58.662 33.333 0.00 0.00 0.00 2.29
107 108 7.549134 AGCATCTCAGACACGATAAAAATTACA 59.451 33.333 0.00 0.00 0.00 2.41
108 109 7.910304 AGCATCTCAGACACGATAAAAATTAC 58.090 34.615 0.00 0.00 0.00 1.89
109 110 8.492673 AAGCATCTCAGACACGATAAAAATTA 57.507 30.769 0.00 0.00 0.00 1.40
110 111 6.992063 AGCATCTCAGACACGATAAAAATT 57.008 33.333 0.00 0.00 0.00 1.82
111 112 6.992063 AAGCATCTCAGACACGATAAAAAT 57.008 33.333 0.00 0.00 0.00 1.82
112 113 6.650807 AGAAAGCATCTCAGACACGATAAAAA 59.349 34.615 0.00 0.00 30.46 1.94
113 114 6.166279 AGAAAGCATCTCAGACACGATAAAA 58.834 36.000 0.00 0.00 30.46 1.52
114 115 5.724328 AGAAAGCATCTCAGACACGATAAA 58.276 37.500 0.00 0.00 30.46 1.40
115 116 5.330455 AGAAAGCATCTCAGACACGATAA 57.670 39.130 0.00 0.00 30.46 1.75
116 117 4.991153 AGAAAGCATCTCAGACACGATA 57.009 40.909 0.00 0.00 30.46 2.92
117 118 3.883830 AGAAAGCATCTCAGACACGAT 57.116 42.857 0.00 0.00 30.46 3.73
118 119 4.991153 ATAGAAAGCATCTCAGACACGA 57.009 40.909 0.00 0.00 39.71 4.35
119 120 6.312426 AGAAAATAGAAAGCATCTCAGACACG 59.688 38.462 0.00 0.00 39.71 4.49
120 121 7.608308 AGAAAATAGAAAGCATCTCAGACAC 57.392 36.000 0.00 0.00 39.71 3.67
121 122 9.322773 CATAGAAAATAGAAAGCATCTCAGACA 57.677 33.333 0.00 0.00 39.71 3.41
122 123 9.539825 TCATAGAAAATAGAAAGCATCTCAGAC 57.460 33.333 0.00 0.00 39.71 3.51
125 126 9.896645 AGTTCATAGAAAATAGAAAGCATCTCA 57.103 29.630 0.00 0.00 39.71 3.27
182 183 7.849322 ACATGGTTATTAGTTGACCCTTTTT 57.151 32.000 0.00 0.00 32.39 1.94
183 184 8.387813 TCTACATGGTTATTAGTTGACCCTTTT 58.612 33.333 0.00 0.00 32.39 2.27
184 185 7.827729 GTCTACATGGTTATTAGTTGACCCTTT 59.172 37.037 0.00 0.00 32.96 3.11
185 186 7.037873 TGTCTACATGGTTATTAGTTGACCCTT 60.038 37.037 0.00 0.00 36.41 3.95
186 187 6.442564 TGTCTACATGGTTATTAGTTGACCCT 59.557 38.462 0.00 0.00 36.41 4.34
187 188 6.646267 TGTCTACATGGTTATTAGTTGACCC 58.354 40.000 0.00 0.00 36.41 4.46
206 207 5.827756 TCCTCTCCTTGTAGAACATGTCTA 58.172 41.667 0.00 0.00 37.84 2.59
207 208 4.678256 TCCTCTCCTTGTAGAACATGTCT 58.322 43.478 0.00 0.69 40.71 3.41
208 209 5.407407 TTCCTCTCCTTGTAGAACATGTC 57.593 43.478 0.00 0.00 0.00 3.06
209 210 4.223923 CCTTCCTCTCCTTGTAGAACATGT 59.776 45.833 0.00 0.00 0.00 3.21
210 211 4.764172 CCTTCCTCTCCTTGTAGAACATG 58.236 47.826 0.00 0.00 0.00 3.21
211 212 3.198853 GCCTTCCTCTCCTTGTAGAACAT 59.801 47.826 0.00 0.00 0.00 2.71
212 213 2.567615 GCCTTCCTCTCCTTGTAGAACA 59.432 50.000 0.00 0.00 0.00 3.18
213 214 2.567615 TGCCTTCCTCTCCTTGTAGAAC 59.432 50.000 0.00 0.00 0.00 3.01
214 215 2.834549 CTGCCTTCCTCTCCTTGTAGAA 59.165 50.000 0.00 0.00 0.00 2.10
215 216 2.043115 TCTGCCTTCCTCTCCTTGTAGA 59.957 50.000 0.00 0.00 0.00 2.59
216 217 2.167487 GTCTGCCTTCCTCTCCTTGTAG 59.833 54.545 0.00 0.00 0.00 2.74
217 218 2.180276 GTCTGCCTTCCTCTCCTTGTA 58.820 52.381 0.00 0.00 0.00 2.41
218 219 0.980423 GTCTGCCTTCCTCTCCTTGT 59.020 55.000 0.00 0.00 0.00 3.16
219 220 0.108424 CGTCTGCCTTCCTCTCCTTG 60.108 60.000 0.00 0.00 0.00 3.61
220 221 1.893919 GCGTCTGCCTTCCTCTCCTT 61.894 60.000 0.00 0.00 33.98 3.36
221 222 2.355193 GCGTCTGCCTTCCTCTCCT 61.355 63.158 0.00 0.00 33.98 3.69
222 223 1.965754 ATGCGTCTGCCTTCCTCTCC 61.966 60.000 0.00 0.00 41.78 3.71
223 224 0.529555 GATGCGTCTGCCTTCCTCTC 60.530 60.000 0.00 0.00 41.78 3.20
224 225 0.975040 AGATGCGTCTGCCTTCCTCT 60.975 55.000 7.89 0.00 41.78 3.69
225 226 0.107945 AAGATGCGTCTGCCTTCCTC 60.108 55.000 9.75 0.00 41.78 3.71
226 227 0.392193 CAAGATGCGTCTGCCTTCCT 60.392 55.000 9.75 0.00 41.78 3.36
227 228 0.674895 ACAAGATGCGTCTGCCTTCC 60.675 55.000 9.75 0.00 41.78 3.46
228 229 0.723981 GACAAGATGCGTCTGCCTTC 59.276 55.000 9.75 0.10 41.78 3.46
229 230 0.674895 GGACAAGATGCGTCTGCCTT 60.675 55.000 9.75 0.00 41.78 4.35
230 231 1.078848 GGACAAGATGCGTCTGCCT 60.079 57.895 9.75 0.00 41.78 4.75
231 232 0.745845 ATGGACAAGATGCGTCTGCC 60.746 55.000 9.75 11.92 41.78 4.85
232 233 1.089920 AATGGACAAGATGCGTCTGC 58.910 50.000 9.75 2.22 43.20 4.26
233 234 2.743664 TCAAATGGACAAGATGCGTCTG 59.256 45.455 9.75 6.52 34.13 3.51
234 235 3.005554 CTCAAATGGACAAGATGCGTCT 58.994 45.455 1.48 1.48 35.82 4.18
235 236 2.476854 GCTCAAATGGACAAGATGCGTC 60.477 50.000 0.00 0.00 0.00 5.19
236 237 1.470098 GCTCAAATGGACAAGATGCGT 59.530 47.619 0.00 0.00 0.00 5.24
237 238 1.741706 AGCTCAAATGGACAAGATGCG 59.258 47.619 0.00 0.00 0.00 4.73
238 239 3.508762 CAAGCTCAAATGGACAAGATGC 58.491 45.455 0.00 0.00 0.00 3.91
239 240 3.760151 TCCAAGCTCAAATGGACAAGATG 59.240 43.478 0.46 0.00 40.74 2.90
240 241 4.038271 TCCAAGCTCAAATGGACAAGAT 57.962 40.909 0.46 0.00 40.74 2.40
241 242 3.507162 TCCAAGCTCAAATGGACAAGA 57.493 42.857 0.46 0.00 40.74 3.02
247 248 2.950309 CAGAGGATCCAAGCTCAAATGG 59.050 50.000 15.82 0.00 38.09 3.16
248 249 2.358267 GCAGAGGATCCAAGCTCAAATG 59.642 50.000 15.82 0.00 33.66 2.32
249 250 2.241685 AGCAGAGGATCCAAGCTCAAAT 59.758 45.455 15.82 0.00 33.79 2.32
250 251 1.632409 AGCAGAGGATCCAAGCTCAAA 59.368 47.619 15.82 0.00 33.79 2.69
251 252 1.283347 AGCAGAGGATCCAAGCTCAA 58.717 50.000 15.82 0.00 33.79 3.02
252 253 3.003027 AGCAGAGGATCCAAGCTCA 57.997 52.632 15.82 0.00 33.79 4.26
253 254 3.684693 GAGCAGAGGATCCAAGCTC 57.315 57.895 26.71 26.71 43.98 4.09
254 255 1.485895 GAAGAGCAGAGGATCCAAGCT 59.514 52.381 21.10 21.10 40.26 3.74
255 256 1.474855 GGAAGAGCAGAGGATCCAAGC 60.475 57.143 15.82 14.38 33.66 4.01
256 257 1.836166 TGGAAGAGCAGAGGATCCAAG 59.164 52.381 15.82 4.02 37.24 3.61
257 258 1.956869 TGGAAGAGCAGAGGATCCAA 58.043 50.000 15.82 0.00 37.24 3.53
258 259 1.556911 GTTGGAAGAGCAGAGGATCCA 59.443 52.381 15.82 0.00 38.36 3.41
259 260 1.134250 GGTTGGAAGAGCAGAGGATCC 60.134 57.143 2.48 2.48 33.66 3.36
260 261 1.836802 AGGTTGGAAGAGCAGAGGATC 59.163 52.381 0.00 0.00 0.00 3.36
261 262 1.963985 AGGTTGGAAGAGCAGAGGAT 58.036 50.000 0.00 0.00 0.00 3.24
262 263 2.180276 GTAGGTTGGAAGAGCAGAGGA 58.820 52.381 0.00 0.00 0.00 3.71
263 264 1.208293 GGTAGGTTGGAAGAGCAGAGG 59.792 57.143 0.00 0.00 0.00 3.69
264 265 2.183679 AGGTAGGTTGGAAGAGCAGAG 58.816 52.381 0.00 0.00 0.00 3.35
265 266 2.327325 AGGTAGGTTGGAAGAGCAGA 57.673 50.000 0.00 0.00 0.00 4.26
266 267 2.168728 GGTAGGTAGGTTGGAAGAGCAG 59.831 54.545 0.00 0.00 0.00 4.24
267 268 2.185387 GGTAGGTAGGTTGGAAGAGCA 58.815 52.381 0.00 0.00 0.00 4.26
268 269 2.468915 AGGTAGGTAGGTTGGAAGAGC 58.531 52.381 0.00 0.00 0.00 4.09
269 270 4.607239 TGTAGGTAGGTAGGTTGGAAGAG 58.393 47.826 0.00 0.00 0.00 2.85
270 271 4.680278 TGTAGGTAGGTAGGTTGGAAGA 57.320 45.455 0.00 0.00 0.00 2.87
271 272 4.529377 TGTTGTAGGTAGGTAGGTTGGAAG 59.471 45.833 0.00 0.00 0.00 3.46
272 273 4.491675 TGTTGTAGGTAGGTAGGTTGGAA 58.508 43.478 0.00 0.00 0.00 3.53
273 274 4.091549 CTGTTGTAGGTAGGTAGGTTGGA 58.908 47.826 0.00 0.00 0.00 3.53
274 275 4.091549 TCTGTTGTAGGTAGGTAGGTTGG 58.908 47.826 0.00 0.00 0.00 3.77
275 276 5.934402 ATCTGTTGTAGGTAGGTAGGTTG 57.066 43.478 0.00 0.00 0.00 3.77
276 277 6.947376 AAATCTGTTGTAGGTAGGTAGGTT 57.053 37.500 0.00 0.00 0.00 3.50
277 278 8.066247 AGATAAATCTGTTGTAGGTAGGTAGGT 58.934 37.037 0.00 0.00 35.42 3.08
278 279 8.480133 AGATAAATCTGTTGTAGGTAGGTAGG 57.520 38.462 0.00 0.00 35.42 3.18
294 295 7.544622 TGTTGCTTCGTAGTACAGATAAATCT 58.455 34.615 0.38 0.00 37.72 2.40
295 296 7.751047 TGTTGCTTCGTAGTACAGATAAATC 57.249 36.000 0.38 0.00 0.00 2.17
296 297 7.817962 AGTTGTTGCTTCGTAGTACAGATAAAT 59.182 33.333 0.38 0.00 0.00 1.40
297 298 7.149973 AGTTGTTGCTTCGTAGTACAGATAAA 58.850 34.615 0.38 0.00 0.00 1.40
298 299 6.684686 AGTTGTTGCTTCGTAGTACAGATAA 58.315 36.000 0.38 0.00 0.00 1.75
299 300 6.263516 AGTTGTTGCTTCGTAGTACAGATA 57.736 37.500 0.38 0.00 0.00 1.98
300 301 5.135508 AGTTGTTGCTTCGTAGTACAGAT 57.864 39.130 0.38 0.00 0.00 2.90
301 302 4.579454 AGTTGTTGCTTCGTAGTACAGA 57.421 40.909 0.38 0.00 0.00 3.41
302 303 5.217393 TGTAGTTGTTGCTTCGTAGTACAG 58.783 41.667 0.38 0.00 0.00 2.74
303 304 5.185668 TGTAGTTGTTGCTTCGTAGTACA 57.814 39.130 0.38 0.00 0.00 2.90
319 320 2.763902 GGGCTGGGGCTTGTAGTT 59.236 61.111 0.00 0.00 38.73 2.24
327 328 1.076705 CTTTTAGAGGGGCTGGGGC 60.077 63.158 0.00 0.00 37.82 5.80
335 336 5.407407 TCTGTTACTCTGCTTTTAGAGGG 57.593 43.478 7.60 0.00 46.69 4.30
338 339 5.853936 TGCTTCTGTTACTCTGCTTTTAGA 58.146 37.500 0.00 0.00 0.00 2.10
339 340 6.734104 ATGCTTCTGTTACTCTGCTTTTAG 57.266 37.500 0.00 0.00 0.00 1.85
387 389 0.310854 CGGTTTGGAGGCTTGTGAAC 59.689 55.000 0.00 0.00 0.00 3.18
427 429 3.290710 TGATGATGATGAGGACGAGACA 58.709 45.455 0.00 0.00 0.00 3.41
446 448 3.366273 GCAGATGCAATTCGGAACTTTGA 60.366 43.478 7.97 0.00 41.59 2.69
534 536 1.137086 GCTGCCTGAGAAGGACGATTA 59.863 52.381 0.00 0.00 0.00 1.75
539 541 1.446966 GACGCTGCCTGAGAAGGAC 60.447 63.158 0.00 0.00 0.00 3.85
561 563 2.416747 GGAATTTTTCTGGCTTGTGGC 58.583 47.619 0.00 0.00 40.90 5.01
716 726 0.261991 AATAGGAGGTGGCGAGGAGA 59.738 55.000 0.00 0.00 0.00 3.71
719 729 1.705873 AGTAATAGGAGGTGGCGAGG 58.294 55.000 0.00 0.00 0.00 4.63
809 822 2.049475 GACGACGAGGAGGATGACGG 62.049 65.000 0.00 0.00 0.00 4.79
1216 1255 8.207521 ACAAACAGAAGAAGAAGAAGAAGAAG 57.792 34.615 0.00 0.00 0.00 2.85
1219 1258 8.555361 CCTAACAAACAGAAGAAGAAGAAGAAG 58.445 37.037 0.00 0.00 0.00 2.85
1220 1259 8.265055 TCCTAACAAACAGAAGAAGAAGAAGAA 58.735 33.333 0.00 0.00 0.00 2.52
1221 1260 7.792032 TCCTAACAAACAGAAGAAGAAGAAGA 58.208 34.615 0.00 0.00 0.00 2.87
1222 1261 8.338986 GTTCCTAACAAACAGAAGAAGAAGAAG 58.661 37.037 0.00 0.00 0.00 2.85
1324 1363 5.789643 TTGAGCTAAACATTTGAAAGCCT 57.210 34.783 0.00 0.00 33.63 4.58
1414 1453 7.496747 TGGACATGTAAAGAAAAGAAAAAGGG 58.503 34.615 0.00 0.00 0.00 3.95
1475 1514 6.471233 TTAGTACAAGATGTGCATCTAGCT 57.529 37.500 14.24 11.80 46.75 3.32
1476 1515 7.721286 AATTAGTACAAGATGTGCATCTAGC 57.279 36.000 14.24 6.23 46.75 3.42
1477 1516 9.102757 ACAAATTAGTACAAGATGTGCATCTAG 57.897 33.333 14.24 0.00 46.75 2.43
1481 1520 9.840427 GTAAACAAATTAGTACAAGATGTGCAT 57.160 29.630 0.00 0.00 35.34 3.96
1492 1531 9.797473 GTAGTTTGACCGTAAACAAATTAGTAC 57.203 33.333 0.00 0.00 41.76 2.73
1495 1534 7.528182 CACGTAGTTTGACCGTAAACAAATTAG 59.472 37.037 0.00 0.00 41.61 1.73
1496 1535 7.010923 ACACGTAGTTTGACCGTAAACAAATTA 59.989 33.333 0.00 0.00 41.61 1.40
1497 1536 6.183360 ACACGTAGTTTGACCGTAAACAAATT 60.183 34.615 0.00 0.00 41.61 1.82
1508 1549 3.002862 TGAATTGCACACGTAGTTTGACC 59.997 43.478 0.00 0.00 41.30 4.02
1564 1605 8.001881 TCCAATTGAAAAGTACTTAGTTTGCA 57.998 30.769 8.92 0.00 33.43 4.08
1783 1824 7.940178 AAATTGCGTCGTCTATATACATTCA 57.060 32.000 0.00 0.00 0.00 2.57
1785 1826 8.912658 CACTAAATTGCGTCGTCTATATACATT 58.087 33.333 0.00 0.00 0.00 2.71
1795 1836 3.515071 AACACACTAAATTGCGTCGTC 57.485 42.857 0.00 0.00 0.00 4.20
1796 1837 3.064271 ACAAACACACTAAATTGCGTCGT 59.936 39.130 0.00 0.00 0.00 4.34
1797 1838 3.613563 ACAAACACACTAAATTGCGTCG 58.386 40.909 0.00 0.00 0.00 5.12
1838 1879 9.902196 CCACCGTTTTATAATGTAAGACTTTTT 57.098 29.630 0.00 0.00 0.00 1.94
1839 1880 9.287373 TCCACCGTTTTATAATGTAAGACTTTT 57.713 29.630 0.00 0.00 0.00 2.27
1843 1884 8.260270 ACTTCCACCGTTTTATAATGTAAGAC 57.740 34.615 0.00 0.00 0.00 3.01
1848 1889 9.016438 ACAAATACTTCCACCGTTTTATAATGT 57.984 29.630 0.00 0.00 0.00 2.71
1849 1890 9.284594 CACAAATACTTCCACCGTTTTATAATG 57.715 33.333 0.00 0.00 0.00 1.90
1850 1891 9.233649 TCACAAATACTTCCACCGTTTTATAAT 57.766 29.630 0.00 0.00 0.00 1.28
1851 1892 8.618702 TCACAAATACTTCCACCGTTTTATAA 57.381 30.769 0.00 0.00 0.00 0.98
1853 1894 7.513371 TTCACAAATACTTCCACCGTTTTAT 57.487 32.000 0.00 0.00 0.00 1.40
1854 1895 6.939132 TTCACAAATACTTCCACCGTTTTA 57.061 33.333 0.00 0.00 0.00 1.52
1858 1899 3.756434 CCATTCACAAATACTTCCACCGT 59.244 43.478 0.00 0.00 0.00 4.83
1859 1900 4.006989 TCCATTCACAAATACTTCCACCG 58.993 43.478 0.00 0.00 0.00 4.94
1862 1903 4.290985 TCCCTCCATTCACAAATACTTCCA 59.709 41.667 0.00 0.00 0.00 3.53
1863 1904 4.855340 TCCCTCCATTCACAAATACTTCC 58.145 43.478 0.00 0.00 0.00 3.46
1864 1905 4.336713 GCTCCCTCCATTCACAAATACTTC 59.663 45.833 0.00 0.00 0.00 3.01
1905 2291 5.601582 CAACAATTTCTATGCTTGTTTGCG 58.398 37.500 0.00 0.00 40.19 4.85
1914 2300 8.871862 TGTATTTCAATGCAACAATTTCTATGC 58.128 29.630 0.00 0.00 39.22 3.14
1951 2337 8.834004 TTGACCAGGTATAGAAATACTACTGT 57.166 34.615 0.00 0.00 38.44 3.55
2123 2509 3.211865 CCACCAATCCATCACTCATCAG 58.788 50.000 0.00 0.00 0.00 2.90
2165 2551 7.823665 TCAAAGCATCTCATTATTGGCATATC 58.176 34.615 0.00 0.00 0.00 1.63
2324 2711 8.922058 AACCAATACGTAGACTAACAATACAG 57.078 34.615 0.08 0.00 0.00 2.74
2362 2749 9.382275 GCCAATTTCATGTTAACAAGGAAATAT 57.618 29.630 31.02 23.42 40.15 1.28
2394 2784 6.135290 ACGTAATATGACCGTTACTGCTTA 57.865 37.500 0.00 0.00 0.00 3.09
2400 2790 5.973565 AGCACTTACGTAATATGACCGTTAC 59.026 40.000 18.90 4.44 36.12 2.50
2418 2808 2.169352 AGAACTCACACTGACAGCACTT 59.831 45.455 1.25 0.00 0.00 3.16
2419 2809 1.759445 AGAACTCACACTGACAGCACT 59.241 47.619 1.25 0.00 0.00 4.40
2420 2810 2.231215 AGAACTCACACTGACAGCAC 57.769 50.000 1.25 0.00 0.00 4.40
2421 2811 4.607293 ATTAGAACTCACACTGACAGCA 57.393 40.909 1.25 0.00 0.00 4.41
2422 2812 5.466728 TCAAATTAGAACTCACACTGACAGC 59.533 40.000 1.25 0.00 0.00 4.40
2424 2814 8.344831 CAATTCAAATTAGAACTCACACTGACA 58.655 33.333 0.00 0.00 0.00 3.58
2492 2891 5.183331 CGAGAAGTAATATGGATCGGAAGGA 59.817 44.000 0.00 0.00 0.00 3.36
2495 2894 4.523173 AGCGAGAAGTAATATGGATCGGAA 59.477 41.667 0.00 0.00 0.00 4.30
2516 2915 2.619013 ACTAAAACTGCGATGCAAGC 57.381 45.000 10.19 10.19 38.41 4.01
2517 2916 4.641954 CTGTACTAAAACTGCGATGCAAG 58.358 43.478 0.00 0.00 38.41 4.01
2518 2917 3.120338 GCTGTACTAAAACTGCGATGCAA 60.120 43.478 0.00 0.00 38.41 4.08
2519 2918 2.415168 GCTGTACTAAAACTGCGATGCA 59.585 45.455 0.00 0.00 35.12 3.96
2520 2919 2.673368 AGCTGTACTAAAACTGCGATGC 59.327 45.455 0.00 0.00 45.74 3.91
2521 2920 4.928661 AAGCTGTACTAAAACTGCGATG 57.071 40.909 0.00 0.00 45.74 3.84
2522 2921 6.164176 ACTAAAGCTGTACTAAAACTGCGAT 58.836 36.000 0.00 0.00 45.74 4.58
2553 2952 6.109359 CCCAAGAACAACAATTACCAAAACA 58.891 36.000 0.00 0.00 0.00 2.83
2554 2953 5.525745 CCCCAAGAACAACAATTACCAAAAC 59.474 40.000 0.00 0.00 0.00 2.43
2564 2966 1.962807 CATCAGCCCCAAGAACAACAA 59.037 47.619 0.00 0.00 0.00 2.83
2602 3004 3.055747 TGCATGCATCACATTTCCAACAT 60.056 39.130 18.46 0.00 36.64 2.71
2752 3154 2.176273 GGAGTACATGCGCTGCAGG 61.176 63.158 17.12 12.33 46.22 4.85
2827 3229 1.075896 GGAGGAGACGGAGACCCAT 60.076 63.158 0.00 0.00 0.00 4.00
3432 3834 1.671742 TCCTGCGTGGAGAGGAAAC 59.328 57.895 0.00 0.00 40.56 2.78
3463 3865 1.003355 CAATGGCGGAGGTGACAGT 60.003 57.895 0.00 0.00 0.00 3.55
3634 4036 7.690952 AATATTACAACGGCTAAAAAGTGGA 57.309 32.000 0.00 0.00 0.00 4.02
3636 4038 7.486870 GGGAAATATTACAACGGCTAAAAAGTG 59.513 37.037 0.00 0.00 0.00 3.16
3637 4039 7.177041 TGGGAAATATTACAACGGCTAAAAAGT 59.823 33.333 0.00 0.00 0.00 2.66
3638 4040 7.540299 TGGGAAATATTACAACGGCTAAAAAG 58.460 34.615 0.00 0.00 0.00 2.27
3639 4041 7.393796 TCTGGGAAATATTACAACGGCTAAAAA 59.606 33.333 0.00 0.00 0.00 1.94
3640 4042 6.885376 TCTGGGAAATATTACAACGGCTAAAA 59.115 34.615 0.00 0.00 0.00 1.52
3643 4045 5.104859 TGTCTGGGAAATATTACAACGGCTA 60.105 40.000 0.00 0.00 0.00 3.93
3652 4054 7.148086 ACGTACGTACTTGTCTGGGAAATATTA 60.148 37.037 21.41 0.00 0.00 0.98
3655 4057 4.458989 ACGTACGTACTTGTCTGGGAAATA 59.541 41.667 21.41 0.00 0.00 1.40
3702 4116 4.272504 ACATGAACAGTTAACCTTGTCACG 59.727 41.667 0.00 0.00 0.00 4.35
3716 4130 2.118313 TGGCCTGATCACATGAACAG 57.882 50.000 3.32 11.19 42.43 3.16
3870 4284 2.754658 AGTCCGGTACCAGCCTCG 60.755 66.667 13.54 0.00 0.00 4.63
4043 4457 1.003839 CTTGGAACCAGCCAGCGTA 60.004 57.895 0.00 0.00 39.52 4.42
4047 4461 2.270986 GCACCTTGGAACCAGCCAG 61.271 63.158 0.00 0.00 39.52 4.85
4165 4584 5.942236 GGGAATATTAATTAACCCCGACCTC 59.058 44.000 9.52 0.00 0.00 3.85
4213 4632 4.585162 ACCACCATTTCAATTGTAAACCGA 59.415 37.500 5.13 0.00 0.00 4.69
4215 4634 4.450757 GCACCACCATTTCAATTGTAAACC 59.549 41.667 5.13 0.00 0.00 3.27
4216 4635 4.149747 CGCACCACCATTTCAATTGTAAAC 59.850 41.667 5.13 0.00 0.00 2.01
4273 4692 9.601217 AGCTAAATCGTTGTATCTATGTTCTTT 57.399 29.630 0.00 0.00 0.00 2.52
4382 4846 7.170151 AGCAAAAGTTTAAACAAACGTGAAACT 59.830 29.630 20.06 0.00 41.01 2.66
4387 4851 8.099704 GTCTAAGCAAAAGTTTAAACAAACGTG 58.900 33.333 20.06 10.98 37.71 4.49
4389 4853 8.099704 GTGTCTAAGCAAAAGTTTAAACAAACG 58.900 33.333 20.06 7.20 37.71 3.60
4390 4854 8.917655 TGTGTCTAAGCAAAAGTTTAAACAAAC 58.082 29.630 20.06 5.16 0.00 2.93
4415 4879 9.708222 GCAACTTAAGACATTAGACATTACATG 57.292 33.333 10.09 0.00 0.00 3.21
4416 4880 9.448438 TGCAACTTAAGACATTAGACATTACAT 57.552 29.630 10.09 0.00 0.00 2.29
4432 4896 8.965172 GCATGATCTTCAAATATGCAACTTAAG 58.035 33.333 0.00 0.00 42.63 1.85
4464 4928 5.546110 TGGGGCAGAGTATAACATATTGCTA 59.454 40.000 0.00 0.00 0.00 3.49
4466 4930 4.651778 TGGGGCAGAGTATAACATATTGC 58.348 43.478 0.00 0.00 0.00 3.56
4467 4931 7.581213 TTTTGGGGCAGAGTATAACATATTG 57.419 36.000 0.00 0.00 0.00 1.90
4468 4932 8.782137 AATTTTGGGGCAGAGTATAACATATT 57.218 30.769 0.00 0.00 0.00 1.28
4469 4933 8.227507 AGAATTTTGGGGCAGAGTATAACATAT 58.772 33.333 0.00 0.00 0.00 1.78
4470 4934 7.582719 AGAATTTTGGGGCAGAGTATAACATA 58.417 34.615 0.00 0.00 0.00 2.29
4471 4935 6.435164 AGAATTTTGGGGCAGAGTATAACAT 58.565 36.000 0.00 0.00 0.00 2.71
4472 4936 5.826643 AGAATTTTGGGGCAGAGTATAACA 58.173 37.500 0.00 0.00 0.00 2.41
4481 4945 5.467035 TTAAGACAAGAATTTTGGGGCAG 57.533 39.130 0.00 0.00 0.00 4.85
4482 4946 5.878406 TTTAAGACAAGAATTTTGGGGCA 57.122 34.783 0.00 0.00 0.00 5.36
4484 4948 9.639601 GACTAATTTAAGACAAGAATTTTGGGG 57.360 33.333 0.00 0.00 0.00 4.96
4585 5049 7.163441 TGCCCTAAATTATATTACTCCGTTCC 58.837 38.462 0.00 0.00 0.00 3.62
4587 5051 7.660208 CACTGCCCTAAATTATATTACTCCGTT 59.340 37.037 0.00 0.00 0.00 4.44
4600 5064 5.755849 AGTTACTATGCACTGCCCTAAATT 58.244 37.500 0.00 0.00 0.00 1.82
4707 5204 4.092091 CACGTGGTGAGAAATCTAGAAAGC 59.908 45.833 7.95 0.00 35.23 3.51
4708 5205 5.230942 ACACGTGGTGAGAAATCTAGAAAG 58.769 41.667 21.57 0.00 36.96 2.62
4733 5230 4.341806 ACCCGACGTTTATATACCACATGA 59.658 41.667 0.00 0.00 0.00 3.07
4814 5312 3.120786 CCACAAAACCGTACTTTCTAGCG 60.121 47.826 0.00 0.00 0.00 4.26
4816 5314 6.649557 AGAATCCACAAAACCGTACTTTCTAG 59.350 38.462 0.00 0.00 0.00 2.43
4871 5369 3.217599 TCGTATTGTGCAGTCTGAGAC 57.782 47.619 3.98 3.98 0.00 3.36
4969 5467 9.817809 ATTGTATCAACGTCTAACTATGTTCAT 57.182 29.630 0.00 0.00 0.00 2.57
4984 5482 4.094739 TGGCAATCTGACATTGTATCAACG 59.905 41.667 0.00 0.00 24.43 4.10
5026 5524 3.788227 TTCCCAAACAGAGCTGTGTAT 57.212 42.857 17.94 4.96 44.13 2.29
5029 5527 7.386299 GTCTATATATTCCCAAACAGAGCTGTG 59.614 40.741 9.74 9.74 44.13 3.66
5031 5529 6.876257 GGTCTATATATTCCCAAACAGAGCTG 59.124 42.308 0.00 0.00 0.00 4.24
5140 5640 6.648879 AACCAATGTAATATACCACATGGC 57.351 37.500 0.00 0.00 39.32 4.40
5310 5810 6.743575 AGTGTGCAATCTTGGATTACTTAC 57.256 37.500 0.00 0.00 29.46 2.34
5335 5835 9.121517 CTTGTGTGCAGTCTAATTTAGAATTTG 57.878 33.333 7.70 8.14 36.40 2.32
5336 5836 8.850156 ACTTGTGTGCAGTCTAATTTAGAATTT 58.150 29.630 7.70 0.00 36.40 1.82
5457 5957 8.554528 TGATCGCTTCTTCAATCTAAATGAATC 58.445 33.333 0.00 0.00 36.30 2.52
5471 5971 1.442769 TGTGCCTTGATCGCTTCTTC 58.557 50.000 0.00 0.00 0.00 2.87
5491 5991 9.621629 TTGTCATTTCTTAAAACTTCTCCACTA 57.378 29.630 0.00 0.00 0.00 2.74
5662 6173 7.487484 TGCAGAATTTCTTGACACAATTGTTA 58.513 30.769 8.77 0.00 35.47 2.41
5720 6231 3.317150 CAAAGGAAAAAGGCCAACGATC 58.683 45.455 5.01 0.00 0.00 3.69
5884 6398 2.829720 TGCTTGGTCCTTATGTAGACGT 59.170 45.455 0.00 0.00 33.66 4.34
5910 6424 3.941483 GGTGTAAGCATGTAAGAGCATGT 59.059 43.478 7.71 0.00 45.75 3.21
6034 6554 1.089920 TCGTTACAGACCTAGTCGGC 58.910 55.000 0.00 0.00 37.67 5.54
6039 6559 5.166398 ACGGAAAAATCGTTACAGACCTAG 58.834 41.667 0.00 0.00 37.61 3.02
6154 6675 9.658799 CATAGACCATAGGTACATAAATTCCAG 57.341 37.037 0.00 0.00 35.25 3.86
6175 6696 2.095212 GTCGCCGATGCATAGACATAGA 60.095 50.000 8.55 0.00 37.32 1.98
6209 6758 1.625511 TATGCATGCCAACACCACAA 58.374 45.000 16.68 0.00 0.00 3.33
6318 7033 6.774170 TGATATATCCCATTTCCATATGCTGC 59.226 38.462 10.25 0.00 0.00 5.25
6388 7108 5.123979 GCAACTAGTCAAAGGTAGGGAAATG 59.876 44.000 0.00 0.00 0.00 2.32
6398 7118 4.984161 CCACAAATTGCAACTAGTCAAAGG 59.016 41.667 0.00 0.00 0.00 3.11
6523 7244 2.580867 GAGGAGTAGTGCAGCGCG 60.581 66.667 0.00 0.00 0.00 6.86
6620 7341 4.996434 GTGTCCTGCTGTGCCGCT 62.996 66.667 0.00 0.00 0.00 5.52
7083 7817 1.168407 AAGCAGCTGTGTCGTTGCAT 61.168 50.000 16.64 0.00 42.63 3.96
7157 7891 4.833380 TCAATCCCCGGTACAAAATCAAAA 59.167 37.500 0.00 0.00 0.00 2.44
7258 9233 1.302192 GTCCAAGGGCGCTAACACA 60.302 57.895 7.64 0.00 0.00 3.72
7259 9234 2.388232 CGTCCAAGGGCGCTAACAC 61.388 63.158 7.64 0.00 0.00 3.32
7260 9235 2.047655 CGTCCAAGGGCGCTAACA 60.048 61.111 7.64 0.00 0.00 2.41
7261 9236 2.588856 ATCCGTCCAAGGGCGCTAAC 62.589 60.000 7.64 2.25 0.00 2.34
7262 9237 2.363975 ATCCGTCCAAGGGCGCTAA 61.364 57.895 7.64 0.00 0.00 3.09
7263 9238 2.762459 ATCCGTCCAAGGGCGCTA 60.762 61.111 7.64 0.00 0.00 4.26
7264 9239 4.473520 CATCCGTCCAAGGGCGCT 62.474 66.667 7.64 0.00 0.00 5.92
7322 9322 0.250770 GAAAAAGGTGAGGAGGCGGT 60.251 55.000 0.00 0.00 0.00 5.68
7325 9325 4.380973 GCTTATTGAAAAAGGTGAGGAGGC 60.381 45.833 0.00 0.00 0.00 4.70
7333 9333 6.488715 AGAGAGATGGCTTATTGAAAAAGGT 58.511 36.000 0.00 0.00 0.00 3.50
7339 9342 7.423844 TGAGTAAGAGAGATGGCTTATTGAA 57.576 36.000 0.00 0.00 0.00 2.69
7350 9353 5.424895 ACAAGCCTCAATGAGTAAGAGAGAT 59.575 40.000 9.63 0.00 0.00 2.75
7351 9354 4.774726 ACAAGCCTCAATGAGTAAGAGAGA 59.225 41.667 9.63 0.00 0.00 3.10
7436 9439 2.167662 AGCCGTCCCTAATTTTGTTGG 58.832 47.619 0.00 0.00 0.00 3.77
7527 9531 4.739716 CGTGGTTTTCTTTTTCAGACATGG 59.260 41.667 0.00 0.00 0.00 3.66
7635 9639 0.887933 GTGACATTTTGCGTGGGGAT 59.112 50.000 0.00 0.00 0.00 3.85
7709 9713 4.343811 TTTCGTTTTTCTTTGTGCGAGA 57.656 36.364 0.00 0.00 0.00 4.04
7773 9778 0.319083 ATCCAACGGTAGTCAACGCA 59.681 50.000 0.00 0.00 0.00 5.24
7783 9788 0.591170 CGTGCTGAAAATCCAACGGT 59.409 50.000 0.00 0.00 0.00 4.83
7843 9848 1.060729 TTCCCACTTCCCATCGAACA 58.939 50.000 0.00 0.00 0.00 3.18
7887 9893 3.000819 ATGGTTGTCGGCGAGGGA 61.001 61.111 11.20 0.00 0.00 4.20
7900 9906 2.039084 GAGTTGAGTGGGAACTGATGGT 59.961 50.000 0.00 0.00 33.71 3.55
7918 9924 2.507471 GGGAATGAGAGAATGGGTGAGT 59.493 50.000 0.00 0.00 0.00 3.41
7951 9957 4.799255 GCGGAGTTTGGATTGGTTGATTTT 60.799 41.667 0.00 0.00 0.00 1.82
7952 9958 3.306019 GCGGAGTTTGGATTGGTTGATTT 60.306 43.478 0.00 0.00 0.00 2.17
7954 9960 1.818674 GCGGAGTTTGGATTGGTTGAT 59.181 47.619 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.