Multiple sequence alignment - TraesCS5D01G144600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G144600 chr5D 100.000 5138 0 0 1 5138 231327093 231321956 0.000000e+00 9489.0
1 TraesCS5D01G144600 chr5A 95.134 3925 114 23 942 4825 325992330 325996218 0.000000e+00 6119.0
2 TraesCS5D01G144600 chr5A 87.072 642 55 21 325 944 325991355 325991990 0.000000e+00 701.0
3 TraesCS5D01G144600 chr5A 97.287 258 2 1 4881 5138 325996239 325996491 2.840000e-117 433.0
4 TraesCS5D01G144600 chr5A 88.650 326 36 1 1 325 325990991 325991316 3.730000e-106 396.0
5 TraesCS5D01G144600 chr5B 94.710 2968 102 19 1 2920 275168166 275171126 0.000000e+00 4560.0
6 TraesCS5D01G144600 chr5B 95.292 1933 47 8 2913 4825 275171290 275173198 0.000000e+00 3025.0
7 TraesCS5D01G144600 chr5B 100.000 258 0 0 4881 5138 275173212 275173469 1.290000e-130 477.0
8 TraesCS5D01G144600 chr4D 94.492 236 13 0 4903 5138 98482062 98481827 1.050000e-96 364.0
9 TraesCS5D01G144600 chr4B 94.492 236 13 0 4903 5138 139769315 139769080 1.050000e-96 364.0
10 TraesCS5D01G144600 chr4B 87.288 236 28 2 636 870 646186293 646186059 8.480000e-68 268.0
11 TraesCS5D01G144600 chr4A 94.068 236 14 0 4903 5138 477833810 477834045 4.890000e-95 359.0
12 TraesCS5D01G144600 chrUn 88.235 238 24 4 634 870 223002339 223002105 1.090000e-71 281.0
13 TraesCS5D01G144600 chr3D 88.235 238 24 4 634 870 29493992 29493758 1.090000e-71 281.0
14 TraesCS5D01G144600 chr3D 88.235 238 24 4 634 870 29528921 29528687 1.090000e-71 281.0
15 TraesCS5D01G144600 chr3D 88.136 236 26 2 636 870 417156493 417156727 3.920000e-71 279.0
16 TraesCS5D01G144600 chr3D 88.889 225 23 2 647 870 29565850 29565627 5.070000e-70 276.0
17 TraesCS5D01G144600 chr7B 86.809 235 28 3 636 869 32413105 32412873 5.100000e-65 259.0
18 TraesCS5D01G144600 chr7B 77.444 133 20 7 50 175 523739699 523739570 2.570000e-08 71.3
19 TraesCS5D01G144600 chr3B 100.000 28 0 0 458 485 672092722 672092695 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G144600 chr5D 231321956 231327093 5137 True 9489.000000 9489 100.000000 1 5138 1 chr5D.!!$R1 5137
1 TraesCS5D01G144600 chr5A 325990991 325996491 5500 False 1912.250000 6119 92.035750 1 5138 4 chr5A.!!$F1 5137
2 TraesCS5D01G144600 chr5B 275168166 275173469 5303 False 2687.333333 4560 96.667333 1 5138 3 chr5B.!!$F1 5137

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
248 250 0.447801 GTGCACACGCTAATTCTGGG 59.552 55.000 13.17 0.0 39.64 4.45 F
371 411 0.807496 GCTTCGATTTGCCTCTGCTT 59.193 50.000 0.00 0.0 38.71 3.91 F
1038 1453 0.890996 CCATTCCAATAGCTCCGGCC 60.891 60.000 0.00 0.0 39.73 6.13 F
2879 3321 2.026542 TGCCACTCTGCATTCTCTTCAT 60.027 45.455 0.00 0.0 36.04 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1539 1956 0.308993 GCCAATTGGTGCTCGATAGC 59.691 55.000 25.19 3.38 41.72 2.97 R
1582 1999 2.112380 AACGTGGATGATGCATCACA 57.888 45.000 30.92 21.86 42.13 3.58 R
2897 3339 6.737254 AAGGAAACACCAGATATTGTAACG 57.263 37.500 0.00 0.00 42.04 3.18 R
4875 5508 1.202976 ACCCACATTGCTCTTTCTGCT 60.203 47.619 0.00 0.00 0.00 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 1.079405 GCGGGGTCACATTCTTCGA 60.079 57.895 0.00 0.00 0.00 3.71
77 78 9.116067 CTTAATTGAGGTATCCGGTTATGAAAA 57.884 33.333 0.00 0.00 0.00 2.29
82 83 6.990349 TGAGGTATCCGGTTATGAAAAAGATC 59.010 38.462 0.00 0.00 0.00 2.75
183 185 4.021894 GGTTATAGATGCTCTCATGTCCGT 60.022 45.833 0.00 0.00 31.96 4.69
245 247 1.442769 CAGGTGCACACGCTAATTCT 58.557 50.000 20.43 0.00 39.64 2.40
248 250 0.447801 GTGCACACGCTAATTCTGGG 59.552 55.000 13.17 0.00 39.64 4.45
371 411 0.807496 GCTTCGATTTGCCTCTGCTT 59.193 50.000 0.00 0.00 38.71 3.91
512 554 9.935241 AAGAGAATAGTGTATAATAGCACATGG 57.065 33.333 0.00 0.00 38.02 3.66
609 653 7.988599 TCATAACAATTATAGGTAACCGCTTGT 59.011 33.333 0.00 0.00 37.17 3.16
829 876 2.480419 CGATGTTGTCACTCTTTCACCC 59.520 50.000 0.00 0.00 0.00 4.61
844 898 8.262227 ACTCTTTCACCCGTATGAACATTATTA 58.738 33.333 0.00 0.00 38.31 0.98
845 899 9.104965 CTCTTTCACCCGTATGAACATTATTAA 57.895 33.333 0.00 0.00 38.31 1.40
846 900 9.621629 TCTTTCACCCGTATGAACATTATTAAT 57.378 29.630 0.00 0.00 38.31 1.40
1038 1453 0.890996 CCATTCCAATAGCTCCGGCC 60.891 60.000 0.00 0.00 39.73 6.13
1487 1904 6.554334 TCCTTTGTTCTAAAGAAATGTCGG 57.446 37.500 0.00 0.00 35.58 4.79
1539 1956 9.927668 AAATGTTTAATTGTGTTTCTCATAGGG 57.072 29.630 0.00 0.00 0.00 3.53
1582 1999 4.216257 GCATTGGTGGCTCGATGTATATTT 59.784 41.667 9.30 0.00 32.49 1.40
1598 2015 7.205737 TGTATATTTGTGATGCATCATCCAC 57.794 36.000 30.89 19.23 39.87 4.02
1671 2109 5.798125 TGTTGTCTTGGCCAAATGAATTA 57.202 34.783 20.91 0.66 0.00 1.40
1745 2183 5.320549 AGATTGTGATTGAGACCATTTGC 57.679 39.130 0.00 0.00 0.00 3.68
1803 2241 4.705023 GGGTAAGTGCTAACATGAATTGGT 59.295 41.667 0.00 0.00 0.00 3.67
1806 2244 7.248437 GGTAAGTGCTAACATGAATTGGTTAC 58.752 38.462 0.00 0.00 0.00 2.50
1811 2249 8.367156 AGTGCTAACATGAATTGGTTACAAAAT 58.633 29.630 0.00 0.00 40.55 1.82
2023 2461 5.767277 AGGGATGAAAAATTGCCATCTTT 57.233 34.783 12.01 0.00 37.44 2.52
2143 2584 3.071892 TCTTGGTATATTTGGTAGGGCGG 59.928 47.826 0.00 0.00 0.00 6.13
2276 2717 7.872113 AGGACCAAGATATTTTGTTCTGATC 57.128 36.000 5.36 0.00 0.00 2.92
2879 3321 2.026542 TGCCACTCTGCATTCTCTTCAT 60.027 45.455 0.00 0.00 36.04 2.57
2922 3535 7.021196 CGTTACAATATCTGGTGTTTCCTTTG 58.979 38.462 0.00 0.00 37.07 2.77
3586 4199 2.803492 GCGTGCTTTCGAGGGAATATCT 60.803 50.000 0.00 0.00 30.88 1.98
3699 4312 6.370442 TGTTCTTTATTGTCAGTTATGGACCG 59.630 38.462 0.00 0.00 34.36 4.79
3703 4316 0.389296 TGTCAGTTATGGACCGCACG 60.389 55.000 0.00 0.00 34.36 5.34
3984 4597 3.594603 TCTTTTCGGTCAGAGGTCATC 57.405 47.619 0.00 0.00 0.00 2.92
4025 4638 7.758495 TCAATGCATCAATATAGATGTCATGC 58.242 34.615 0.00 0.00 45.58 4.06
4026 4639 5.789710 TGCATCAATATAGATGTCATGCG 57.210 39.130 5.90 0.00 45.58 4.73
4062 4675 3.380004 TCATGTTGTTCCGGGAATATTGC 59.620 43.478 13.48 0.00 0.00 3.56
4148 4761 0.796312 GTCGTCGCCAAATGTCATGT 59.204 50.000 0.00 0.00 0.00 3.21
4531 5151 9.788889 TCTGAATTCAAGACATATAGCATCATT 57.211 29.630 9.88 0.00 0.00 2.57
4596 5216 2.675242 CCCTGGTCCGGTTGGCATA 61.675 63.158 0.00 0.00 34.14 3.14
4651 5281 6.759272 TCAGAGAAACACAACTAGTTAGCAT 58.241 36.000 8.04 0.00 0.00 3.79
4666 5299 9.703892 ACTAGTTAGCATGTCATAATTCTGATC 57.296 33.333 0.00 0.00 0.00 2.92
4829 5462 9.933723 AAATTCAAACTCAAGAGAAATTATGGG 57.066 29.630 3.73 0.00 0.00 4.00
4831 5464 8.477419 TTCAAACTCAAGAGAAATTATGGGTT 57.523 30.769 3.73 0.00 38.08 4.11
4832 5465 8.110860 TCAAACTCAAGAGAAATTATGGGTTC 57.889 34.615 3.73 0.00 35.52 3.62
4834 5467 8.526147 CAAACTCAAGAGAAATTATGGGTTCAT 58.474 33.333 3.73 0.00 35.52 2.57
4835 5468 7.636150 ACTCAAGAGAAATTATGGGTTCATG 57.364 36.000 3.73 0.00 34.96 3.07
4836 5469 6.604795 ACTCAAGAGAAATTATGGGTTCATGG 59.395 38.462 3.73 0.00 34.96 3.66
4837 5470 6.730447 TCAAGAGAAATTATGGGTTCATGGA 58.270 36.000 0.00 0.00 34.96 3.41
4838 5471 6.603201 TCAAGAGAAATTATGGGTTCATGGAC 59.397 38.462 0.00 0.00 34.96 4.02
4839 5472 5.126067 AGAGAAATTATGGGTTCATGGACG 58.874 41.667 0.00 0.00 34.96 4.79
4842 5475 5.532406 AGAAATTATGGGTTCATGGACGATG 59.468 40.000 0.00 0.00 34.96 3.84
4843 5476 4.705110 ATTATGGGTTCATGGACGATGA 57.295 40.909 0.00 0.00 39.47 2.92
4844 5477 4.705110 TTATGGGTTCATGGACGATGAT 57.295 40.909 0.58 0.00 40.92 2.45
4845 5478 2.330440 TGGGTTCATGGACGATGATG 57.670 50.000 0.58 0.00 40.92 3.07
4846 5479 1.836802 TGGGTTCATGGACGATGATGA 59.163 47.619 0.58 0.00 40.92 2.92
4847 5480 2.439135 TGGGTTCATGGACGATGATGAT 59.561 45.455 0.58 0.00 40.92 2.45
4848 5481 2.810274 GGGTTCATGGACGATGATGATG 59.190 50.000 0.58 0.00 40.92 3.07
4849 5482 2.225019 GGTTCATGGACGATGATGATGC 59.775 50.000 0.58 0.00 40.92 3.91
4850 5483 2.874086 GTTCATGGACGATGATGATGCA 59.126 45.455 0.58 0.00 40.92 3.96
4851 5484 3.412237 TCATGGACGATGATGATGCAT 57.588 42.857 0.00 0.00 36.06 3.96
4852 5485 3.071479 TCATGGACGATGATGATGCATG 58.929 45.455 2.46 0.00 41.88 4.06
4853 5486 2.914695 TGGACGATGATGATGCATGA 57.085 45.000 2.46 0.00 0.00 3.07
4854 5487 2.762745 TGGACGATGATGATGCATGAG 58.237 47.619 2.46 0.00 0.00 2.90
4855 5488 2.074576 GGACGATGATGATGCATGAGG 58.925 52.381 2.46 0.00 0.00 3.86
4856 5489 2.289257 GGACGATGATGATGCATGAGGA 60.289 50.000 2.46 0.00 0.00 3.71
4857 5490 3.396560 GACGATGATGATGCATGAGGAA 58.603 45.455 2.46 0.00 0.00 3.36
4858 5491 4.001652 GACGATGATGATGCATGAGGAAT 58.998 43.478 2.46 0.00 0.00 3.01
4859 5492 5.156608 ACGATGATGATGCATGAGGAATA 57.843 39.130 2.46 0.00 0.00 1.75
4860 5493 5.554070 ACGATGATGATGCATGAGGAATAA 58.446 37.500 2.46 0.00 0.00 1.40
4861 5494 6.178324 ACGATGATGATGCATGAGGAATAAT 58.822 36.000 2.46 0.00 0.00 1.28
4862 5495 7.333323 ACGATGATGATGCATGAGGAATAATA 58.667 34.615 2.46 0.00 0.00 0.98
4863 5496 7.825761 ACGATGATGATGCATGAGGAATAATAA 59.174 33.333 2.46 0.00 0.00 1.40
4864 5497 8.837389 CGATGATGATGCATGAGGAATAATAAT 58.163 33.333 2.46 0.00 0.00 1.28
4866 5499 9.922477 ATGATGATGCATGAGGAATAATAATCT 57.078 29.630 2.46 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 4.369182 CGGATACCTCAATTAAGAAGCGT 58.631 43.478 0.00 0.00 0.00 5.07
77 78 4.495422 ACAGTCGCGTCTTAAATGATCTT 58.505 39.130 5.77 0.00 0.00 2.40
82 83 2.987149 AGTGACAGTCGCGTCTTAAATG 59.013 45.455 5.77 0.00 36.82 2.32
87 88 1.286260 GGAGTGACAGTCGCGTCTT 59.714 57.895 5.77 0.00 36.82 3.01
164 166 8.953131 TCCCATACGGACATGAGAGCATCTAT 62.953 46.154 0.00 0.00 40.68 1.98
183 185 0.348730 TGACCCCATTCCCTCCCATA 59.651 55.000 0.00 0.00 0.00 2.74
228 230 0.447801 CCAGAATTAGCGTGTGCACC 59.552 55.000 15.69 4.74 46.23 5.01
229 231 0.447801 CCCAGAATTAGCGTGTGCAC 59.552 55.000 10.75 10.75 46.23 4.57
245 247 0.244994 GCACAACAACACACAACCCA 59.755 50.000 0.00 0.00 0.00 4.51
248 250 3.249091 TCATTGCACAACAACACACAAC 58.751 40.909 0.00 0.00 42.27 3.32
371 411 6.189859 AGAGCCAAATCAATTTATCTGACCA 58.810 36.000 0.00 0.00 0.00 4.02
490 532 7.819415 TGCTCCATGTGCTATTATACACTATTC 59.181 37.037 8.95 0.00 37.68 1.75
504 546 0.963962 CAAAACCTGCTCCATGTGCT 59.036 50.000 8.95 0.00 0.00 4.40
729 776 6.703607 AGCAGAGATTGATACCGTGAATAAAG 59.296 38.462 0.00 0.00 0.00 1.85
730 777 6.582636 AGCAGAGATTGATACCGTGAATAAA 58.417 36.000 0.00 0.00 0.00 1.40
733 780 4.626042 GAGCAGAGATTGATACCGTGAAT 58.374 43.478 0.00 0.00 0.00 2.57
844 898 9.191995 CCTCAAGACGCTTTTAAAAACATTATT 57.808 29.630 1.66 0.00 0.00 1.40
845 899 7.328493 GCCTCAAGACGCTTTTAAAAACATTAT 59.672 33.333 1.66 0.00 0.00 1.28
846 900 6.639279 GCCTCAAGACGCTTTTAAAAACATTA 59.361 34.615 1.66 0.00 0.00 1.90
847 901 5.462068 GCCTCAAGACGCTTTTAAAAACATT 59.538 36.000 1.66 0.00 0.00 2.71
848 902 4.982295 GCCTCAAGACGCTTTTAAAAACAT 59.018 37.500 1.66 0.00 0.00 2.71
849 903 4.097286 AGCCTCAAGACGCTTTTAAAAACA 59.903 37.500 1.66 0.00 28.56 2.83
850 904 4.441087 CAGCCTCAAGACGCTTTTAAAAAC 59.559 41.667 1.66 0.00 31.40 2.43
863 917 3.369892 GGTCTGAATTAGCAGCCTCAAGA 60.370 47.826 0.00 0.00 35.86 3.02
955 1370 7.255486 GGCGCCACCTTTATTATTTATCTTTCT 60.255 37.037 24.80 0.00 34.51 2.52
956 1371 6.861572 GGCGCCACCTTTATTATTTATCTTTC 59.138 38.462 24.80 0.00 34.51 2.62
1038 1453 4.436998 GCGGTGGTCGGGAGTCTG 62.437 72.222 0.00 0.00 39.69 3.51
1487 1904 4.947388 TCACAAATGGAGCCCTACAAATAC 59.053 41.667 0.00 0.00 0.00 1.89
1539 1956 0.308993 GCCAATTGGTGCTCGATAGC 59.691 55.000 25.19 3.38 41.72 2.97
1582 1999 2.112380 AACGTGGATGATGCATCACA 57.888 45.000 30.92 21.86 42.13 3.58
1598 2015 3.396260 TCTAAGAGGGTCCAACAAACG 57.604 47.619 0.00 0.00 0.00 3.60
1671 2109 5.700402 AATGTAGGCACACTAGAAGGAAT 57.300 39.130 0.00 0.00 37.54 3.01
1703 2141 4.433615 TCTAAAATCAGCTCGGCTAACAG 58.566 43.478 0.00 0.00 36.40 3.16
1745 2183 3.989817 GCAACCATGAAAACAAAGCCTAG 59.010 43.478 0.00 0.00 0.00 3.02
2143 2584 9.226345 CAGTTTTGAGAGTGAAACATAAAAGAC 57.774 33.333 0.00 0.00 41.43 3.01
2897 3339 6.737254 AAGGAAACACCAGATATTGTAACG 57.263 37.500 0.00 0.00 42.04 3.18
2902 3344 7.925483 TCAAAACAAAGGAAACACCAGATATTG 59.075 33.333 0.00 0.00 42.04 1.90
3373 3986 3.969117 ATATGTAAAGCACGCATGTGG 57.031 42.857 11.65 0.76 46.51 4.17
3586 4199 8.647796 TCTTGTATTAACTTCCTCTCTGAAACA 58.352 33.333 0.00 0.00 0.00 2.83
3984 4597 6.258230 TGCATTGATCTTCAAACACCTTAG 57.742 37.500 0.00 0.00 40.12 2.18
4062 4675 7.933396 TGCCATCAATGACTAAATACATGAAG 58.067 34.615 0.00 0.00 0.00 3.02
4148 4761 2.094597 GCACAGCCAAAATGAGCATACA 60.095 45.455 0.00 0.00 34.82 2.29
4215 4828 6.831769 ACACTAAGATTTCGTGCAAATACAG 58.168 36.000 0.00 0.00 34.60 2.74
4596 5216 2.629137 TGCAGCATTGACACCTTGATTT 59.371 40.909 0.00 0.00 0.00 2.17
4684 5317 6.806739 GCAACTAATTCTTCACCATGGTTTAC 59.193 38.462 16.84 0.00 0.00 2.01
4686 5319 5.279456 GGCAACTAATTCTTCACCATGGTTT 60.279 40.000 16.84 8.66 0.00 3.27
4825 5458 2.439135 TCATCATCGTCCATGAACCCAT 59.561 45.455 0.00 0.00 45.06 4.00
4826 5459 1.836802 TCATCATCGTCCATGAACCCA 59.163 47.619 0.00 0.00 45.06 4.51
4827 5460 2.620251 TCATCATCGTCCATGAACCC 57.380 50.000 0.00 0.00 45.06 4.11
4828 5461 2.225019 GCATCATCATCGTCCATGAACC 59.775 50.000 0.00 0.00 45.06 3.62
4829 5462 2.874086 TGCATCATCATCGTCCATGAAC 59.126 45.455 0.00 0.00 45.06 3.18
4831 5464 2.914695 TGCATCATCATCGTCCATGA 57.085 45.000 0.00 0.00 46.01 3.07
4832 5465 3.071479 TCATGCATCATCATCGTCCATG 58.929 45.455 0.00 0.00 0.00 3.66
4834 5467 2.549349 CCTCATGCATCATCATCGTCCA 60.549 50.000 0.00 0.00 0.00 4.02
4835 5468 2.074576 CCTCATGCATCATCATCGTCC 58.925 52.381 0.00 0.00 0.00 4.79
4836 5469 3.036075 TCCTCATGCATCATCATCGTC 57.964 47.619 0.00 0.00 0.00 4.20
4837 5470 3.480505 TTCCTCATGCATCATCATCGT 57.519 42.857 0.00 0.00 0.00 3.73
4838 5471 6.679327 ATTATTCCTCATGCATCATCATCG 57.321 37.500 0.00 0.00 0.00 3.84
4860 5493 8.573035 GCTCTTTCTGCTACTGTACTAGATTAT 58.427 37.037 0.00 0.00 0.00 1.28
4861 5494 7.556635 TGCTCTTTCTGCTACTGTACTAGATTA 59.443 37.037 0.00 0.00 0.00 1.75
4862 5495 6.378564 TGCTCTTTCTGCTACTGTACTAGATT 59.621 38.462 0.00 0.00 0.00 2.40
4863 5496 5.888724 TGCTCTTTCTGCTACTGTACTAGAT 59.111 40.000 0.00 0.00 0.00 1.98
4864 5497 5.254115 TGCTCTTTCTGCTACTGTACTAGA 58.746 41.667 0.00 0.00 0.00 2.43
4865 5498 5.568685 TGCTCTTTCTGCTACTGTACTAG 57.431 43.478 0.00 0.00 0.00 2.57
4866 5499 5.977489 TTGCTCTTTCTGCTACTGTACTA 57.023 39.130 0.00 0.00 0.00 1.82
4867 5500 4.873746 TTGCTCTTTCTGCTACTGTACT 57.126 40.909 0.00 0.00 0.00 2.73
4868 5501 4.932200 ACATTGCTCTTTCTGCTACTGTAC 59.068 41.667 0.00 0.00 0.00 2.90
4869 5502 4.931601 CACATTGCTCTTTCTGCTACTGTA 59.068 41.667 0.00 0.00 0.00 2.74
4870 5503 3.750130 CACATTGCTCTTTCTGCTACTGT 59.250 43.478 0.00 0.00 0.00 3.55
4871 5504 3.126514 CCACATTGCTCTTTCTGCTACTG 59.873 47.826 0.00 0.00 0.00 2.74
4872 5505 3.341823 CCACATTGCTCTTTCTGCTACT 58.658 45.455 0.00 0.00 0.00 2.57
4873 5506 2.421424 CCCACATTGCTCTTTCTGCTAC 59.579 50.000 0.00 0.00 0.00 3.58
4874 5507 2.040278 ACCCACATTGCTCTTTCTGCTA 59.960 45.455 0.00 0.00 0.00 3.49
4875 5508 1.202976 ACCCACATTGCTCTTTCTGCT 60.203 47.619 0.00 0.00 0.00 4.24
4876 5509 1.251251 ACCCACATTGCTCTTTCTGC 58.749 50.000 0.00 0.00 0.00 4.26
4877 5510 3.012518 CCTACCCACATTGCTCTTTCTG 58.987 50.000 0.00 0.00 0.00 3.02
4878 5511 2.025887 CCCTACCCACATTGCTCTTTCT 60.026 50.000 0.00 0.00 0.00 2.52
4879 5512 2.369394 CCCTACCCACATTGCTCTTTC 58.631 52.381 0.00 0.00 0.00 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.