Multiple sequence alignment - TraesCS5D01G143700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G143700 chr5D 100.000 4425 0 0 1 4425 230015632 230020056 0.000000e+00 8172.0
1 TraesCS5D01G143700 chr5D 100.000 29 0 0 4084 4112 488753906 488753878 2.000000e-03 54.7
2 TraesCS5D01G143700 chr5A 94.007 2236 91 16 482 2688 326721915 326719694 0.000000e+00 3347.0
3 TraesCS5D01G143700 chr5A 93.776 964 32 5 2694 3656 326719659 326718723 0.000000e+00 1423.0
4 TraesCS5D01G143700 chr5A 90.041 492 32 13 1 478 326722447 326721959 4.860000e-174 621.0
5 TraesCS5D01G143700 chr5A 92.284 324 25 0 3979 4302 326718092 326717769 1.120000e-125 460.0
6 TraesCS5D01G143700 chr5A 86.250 160 14 3 3759 3910 326718693 326718534 2.740000e-37 167.0
7 TraesCS5D01G143700 chr5A 94.340 53 3 0 1434 1486 313883887 313883939 1.020000e-11 82.4
8 TraesCS5D01G143700 chr1D 81.360 1368 158 40 992 2290 106324171 106322832 0.000000e+00 1024.0
9 TraesCS5D01G143700 chr1D 84.634 833 85 24 2733 3530 106322719 106321895 0.000000e+00 789.0
10 TraesCS5D01G143700 chr1D 94.643 56 1 2 2683 2738 46311282 46311335 7.890000e-13 86.1
11 TraesCS5D01G143700 chr1A 80.799 1427 166 51 940 2288 107093958 107095354 0.000000e+00 1018.0
12 TraesCS5D01G143700 chr1A 84.875 800 74 24 2730 3491 107095466 107096256 0.000000e+00 763.0
13 TraesCS5D01G143700 chr1A 94.643 56 1 2 2683 2738 209362105 209362158 7.890000e-13 86.1
14 TraesCS5D01G143700 chr1B 81.548 775 91 21 940 1677 160664488 160665247 3.810000e-165 592.0
15 TraesCS5D01G143700 chr1B 84.556 518 44 20 2730 3216 160666109 160666621 8.610000e-132 481.0
16 TraesCS5D01G143700 chr1B 80.841 642 84 15 1679 2290 160665368 160666000 6.700000e-128 468.0
17 TraesCS5D01G143700 chr1B 87.562 201 16 7 3318 3511 160666964 160667162 1.600000e-54 224.0
18 TraesCS5D01G143700 chr1B 91.667 72 5 1 2667 2737 115751914 115751985 1.010000e-16 99.0
19 TraesCS5D01G143700 chr1B 74.107 224 43 9 2441 2656 563439730 563439514 1.320000e-10 78.7
20 TraesCS5D01G143700 chr1B 73.799 229 41 12 2441 2662 563313764 563313548 6.140000e-09 73.1
21 TraesCS5D01G143700 chr3D 80.952 126 18 4 2441 2566 41777963 41778082 1.310000e-15 95.3
22 TraesCS5D01G143700 chr6B 93.333 60 2 2 2683 2742 487209518 487209575 2.190000e-13 87.9
23 TraesCS5D01G143700 chr2D 76.020 196 32 8 2290 2474 15928434 15928625 2.190000e-13 87.9
24 TraesCS5D01G143700 chr5B 96.226 53 1 1 1434 1486 263525553 263525604 7.890000e-13 86.1
25 TraesCS5D01G143700 chr3B 93.220 59 3 1 2687 2744 65214092 65214150 7.890000e-13 86.1
26 TraesCS5D01G143700 chr6A 91.935 62 2 3 2675 2734 62810646 62810586 2.840000e-12 84.2
27 TraesCS5D01G143700 chr6D 84.524 84 6 7 2679 2758 26706988 26706908 4.750000e-10 76.8
28 TraesCS5D01G143700 chr6D 92.105 38 2 1 2305 2342 103473855 103473819 8.000000e-03 52.8
29 TraesCS5D01G143700 chr2A 84.416 77 10 2 2676 2752 755928653 755928727 1.710000e-09 75.0
30 TraesCS5D01G143700 chr2A 88.000 50 3 3 2316 2363 656704493 656704541 6.180000e-04 56.5
31 TraesCS5D01G143700 chr4D 100.000 29 0 0 4085 4113 6151427 6151455 2.000000e-03 54.7
32 TraesCS5D01G143700 chr4D 100.000 29 0 0 4085 4113 6161197 6161225 2.000000e-03 54.7
33 TraesCS5D01G143700 chrUn 100.000 28 0 0 4085 4112 4577031 4577058 8.000000e-03 52.8
34 TraesCS5D01G143700 chrUn 100.000 28 0 0 4085 4112 70911492 70911465 8.000000e-03 52.8
35 TraesCS5D01G143700 chrUn 100.000 28 0 0 4085 4112 70914881 70914854 8.000000e-03 52.8
36 TraesCS5D01G143700 chrUn 100.000 28 0 0 4085 4112 98512014 98512041 8.000000e-03 52.8
37 TraesCS5D01G143700 chrUn 100.000 28 0 0 4085 4112 124186881 124186908 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G143700 chr5D 230015632 230020056 4424 False 8172.00 8172 100.00000 1 4425 1 chr5D.!!$F1 4424
1 TraesCS5D01G143700 chr5A 326717769 326722447 4678 True 1203.60 3347 91.27160 1 4302 5 chr5A.!!$R1 4301
2 TraesCS5D01G143700 chr1D 106321895 106324171 2276 True 906.50 1024 82.99700 992 3530 2 chr1D.!!$R1 2538
3 TraesCS5D01G143700 chr1A 107093958 107096256 2298 False 890.50 1018 82.83700 940 3491 2 chr1A.!!$F2 2551
4 TraesCS5D01G143700 chr1B 160664488 160667162 2674 False 441.25 592 83.62675 940 3511 4 chr1B.!!$F2 2571

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
910 963 0.034059 CTGACTCGCAAACCTCCTGT 59.966 55.0 0.00 0.0 0.0 4.00 F
931 984 0.684535 TTGTTCGCTGTGATCCTCCA 59.315 50.0 0.00 0.0 0.0 3.86 F
1255 1326 1.282653 TTCTCACCAACCACACCCCA 61.283 55.0 0.00 0.0 0.0 4.96 F
2552 2911 1.014564 GTACACTCCTTGCGCACCTC 61.015 60.0 11.12 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2172 2429 0.746659 GAAGTGGCTGCAAAACCAGT 59.253 50.000 0.5 4.06 41.48 4.00 R
2545 2904 1.063616 CATCAAAGATGCTGAGGTGCG 59.936 52.381 0.0 0.00 35.36 5.34 R
2635 3008 1.586422 TAGGCAATTCGCATCTGAGC 58.414 50.000 0.0 0.00 45.17 4.26 R
4094 5238 0.035056 CAAGCCTAGTGGTGGGAAGG 60.035 60.000 0.0 0.00 35.27 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
174 176 6.575244 TCTATCCATGAAAACATACCACCT 57.425 37.500 0.00 0.00 0.00 4.00
176 178 8.275187 TCTATCCATGAAAACATACCACCTAT 57.725 34.615 0.00 0.00 0.00 2.57
180 182 7.178573 TCCATGAAAACATACCACCTATTCAA 58.821 34.615 0.00 0.00 0.00 2.69
183 185 7.681939 TGAAAACATACCACCTATTCAAGTC 57.318 36.000 0.00 0.00 0.00 3.01
197 199 3.607422 TCAAGTCACGCATGTCTTTTG 57.393 42.857 0.00 0.00 32.69 2.44
198 200 2.290367 TCAAGTCACGCATGTCTTTTGG 59.710 45.455 0.00 0.00 32.69 3.28
289 292 7.915397 GTCATGGATGTTATATGTTGTGGAAAC 59.085 37.037 0.00 0.00 0.00 2.78
304 307 5.782047 TGTGGAAACTTGGAGCAAAATATG 58.218 37.500 0.00 0.00 0.00 1.78
307 310 7.029563 GTGGAAACTTGGAGCAAAATATGTAG 58.970 38.462 0.00 0.00 0.00 2.74
329 332 4.039004 AGTTCATGCTTGCCATTGTGTTAA 59.961 37.500 0.00 0.00 29.71 2.01
340 343 9.206870 CTTGCCATTGTGTTAAGTTCAATTAAT 57.793 29.630 0.00 0.00 30.74 1.40
341 344 8.531622 TGCCATTGTGTTAAGTTCAATTAATG 57.468 30.769 0.00 0.00 30.74 1.90
342 345 8.147058 TGCCATTGTGTTAAGTTCAATTAATGT 58.853 29.630 0.00 0.00 30.74 2.71
343 346 8.987890 GCCATTGTGTTAAGTTCAATTAATGTT 58.012 29.630 0.00 0.00 30.74 2.71
413 424 4.441913 CCCAGAACACTCTTGCATTTGTTT 60.442 41.667 0.00 0.00 32.34 2.83
423 434 7.439056 CACTCTTGCATTTGTTTTTCCATTAGT 59.561 33.333 0.00 0.00 0.00 2.24
447 458 9.496873 AGTTTTAGTTGTTTTAAGCACCTTTTT 57.503 25.926 0.00 0.00 0.00 1.94
454 465 8.983724 GTTGTTTTAAGCACCTTTTTATGCATA 58.016 29.630 1.16 1.16 0.00 3.14
478 491 1.805428 AATGTGGTTCCTGCGGCAAC 61.805 55.000 3.44 0.00 0.00 4.17
500 553 5.284864 ACGTGTAGTGATATGAGCTCATTG 58.715 41.667 32.94 12.72 37.76 2.82
505 558 8.454106 GTGTAGTGATATGAGCTCATTGTTTTT 58.546 33.333 32.94 16.91 37.76 1.94
570 623 2.214347 CTGCAGATTGCTGATCTCCAG 58.786 52.381 8.42 7.05 42.63 3.86
591 644 8.922058 TCCAGTTGTTAGTTCTTATTCGATAC 57.078 34.615 0.00 0.00 0.00 2.24
677 730 0.391130 GGTGCGCTGGATTAGTGTCA 60.391 55.000 9.73 0.00 39.16 3.58
691 744 2.688507 AGTGTCACACCTCTAATTGCG 58.311 47.619 3.66 0.00 34.49 4.85
825 878 4.428294 AAATTCTGCCTATCTGCTGCTA 57.572 40.909 0.00 0.00 0.00 3.49
831 884 2.064762 GCCTATCTGCTGCTATCGTTG 58.935 52.381 0.00 0.00 0.00 4.10
896 949 2.423538 GCCACCATAAAAATCGCTGACT 59.576 45.455 0.00 0.00 0.00 3.41
910 963 0.034059 CTGACTCGCAAACCTCCTGT 59.966 55.000 0.00 0.00 0.00 4.00
918 971 1.264288 GCAAACCTCCTGTCTTGTTCG 59.736 52.381 0.00 0.00 0.00 3.95
928 981 1.344438 TGTCTTGTTCGCTGTGATCCT 59.656 47.619 0.00 0.00 0.00 3.24
931 984 0.684535 TTGTTCGCTGTGATCCTCCA 59.315 50.000 0.00 0.00 0.00 3.86
1252 1323 1.308998 CACTTCTCACCAACCACACC 58.691 55.000 0.00 0.00 0.00 4.16
1255 1326 1.282653 TTCTCACCAACCACACCCCA 61.283 55.000 0.00 0.00 0.00 4.96
1265 1336 4.715523 ACACCCCATCGGCGTTGG 62.716 66.667 26.16 26.16 33.26 3.77
1690 1910 4.251268 AGCGGTACACATTTTCTTAGACC 58.749 43.478 0.00 0.00 0.00 3.85
1702 1922 8.287503 ACATTTTCTTAGACCGTGTTTATCAAC 58.712 33.333 0.00 0.00 0.00 3.18
1950 2191 4.547671 CAGGTCCTAGAGAAACCCATAGA 58.452 47.826 0.00 0.00 33.33 1.98
2172 2429 5.766670 AGATGCAAGTGACTTCATCTTTTCA 59.233 36.000 22.79 4.51 36.23 2.69
2220 2477 1.537202 GTTGCACTTGTGGAGGACATC 59.463 52.381 2.81 0.00 33.40 3.06
2233 2490 6.548251 TGTGGAGGACATCGTTGTAGAATATA 59.452 38.462 0.00 0.00 35.79 0.86
2313 2670 1.676635 CATCTGCACCTGGGTGTGG 60.677 63.158 19.28 12.76 46.90 4.17
2322 2679 2.062636 ACCTGGGTGTGGACAGTAAAT 58.937 47.619 0.00 0.00 32.90 1.40
2389 2746 1.796151 CTCCATTGCGCGATGTGTT 59.204 52.632 30.79 0.00 0.00 3.32
2400 2757 3.459435 CGCGATGTGTTTGCAAAAATTC 58.541 40.909 14.67 9.06 33.97 2.17
2406 2763 5.386810 TGTGTTTGCAAAAATTCGTGATG 57.613 34.783 14.67 0.00 0.00 3.07
2426 2783 6.206634 GTGATGTTTGGACATTCAAGGAGTTA 59.793 38.462 0.00 0.00 46.27 2.24
2476 2835 7.386059 ACTTTGAAAAAGAACACTGTTTGGAT 58.614 30.769 6.73 0.00 0.00 3.41
2526 2885 2.246469 TGGAATGTCCAAACACCATGG 58.754 47.619 11.19 11.19 45.00 3.66
2545 2904 4.846779 TGGAAATTTGTACACTCCTTGC 57.153 40.909 0.00 0.00 0.00 4.01
2552 2911 1.014564 GTACACTCCTTGCGCACCTC 61.015 60.000 11.12 0.00 0.00 3.85
2629 3002 4.511527 ACTGTTCATTAGGTGCAGATGAG 58.488 43.478 0.00 0.00 32.00 2.90
2632 3005 1.141657 TCATTAGGTGCAGATGAGCCC 59.858 52.381 0.00 0.00 0.00 5.19
2635 3008 4.864334 GGTGCAGATGAGCCCGGG 62.864 72.222 19.09 19.09 0.00 5.73
2679 3052 6.423182 TGTTTGGCCTGCTAAGATTATACTT 58.577 36.000 3.32 0.00 0.00 2.24
2685 3058 6.394809 GCCTGCTAAGATTATACTTCCTCTC 58.605 44.000 0.00 0.00 0.00 3.20
2688 3061 8.736244 CCTGCTAAGATTATACTTCCTCTCTAC 58.264 40.741 0.00 0.00 0.00 2.59
2689 3062 9.515226 CTGCTAAGATTATACTTCCTCTCTACT 57.485 37.037 0.00 0.00 0.00 2.57
2690 3063 9.509956 TGCTAAGATTATACTTCCTCTCTACTC 57.490 37.037 0.00 0.00 0.00 2.59
2691 3064 9.734984 GCTAAGATTATACTTCCTCTCTACTCT 57.265 37.037 0.00 0.00 0.00 3.24
2773 3175 0.846693 AGGTCTTGTTGAGGGTTGCT 59.153 50.000 0.00 0.00 0.00 3.91
2846 3248 3.813166 TGAGGAAGTTTTGGCTAGTTTCG 59.187 43.478 0.00 0.00 0.00 3.46
2850 3252 6.704310 AGGAAGTTTTGGCTAGTTTCGTATA 58.296 36.000 0.00 0.00 0.00 1.47
2870 3272 9.740239 TCGTATACAAACAGATACAATTAGGTC 57.260 33.333 3.32 0.00 0.00 3.85
3035 3441 5.246981 TGAACCAAGAAATCCAGAGTCAT 57.753 39.130 0.00 0.00 0.00 3.06
3048 3454 4.102996 TCCAGAGTCATGCCATATTTAGCA 59.897 41.667 0.00 0.00 44.45 3.49
3235 3668 7.939039 AGGTATGTTTCTGAATTTCACAAGAGA 59.061 33.333 0.00 0.00 0.00 3.10
3236 3669 8.567948 GGTATGTTTCTGAATTTCACAAGAGAA 58.432 33.333 0.00 0.00 0.00 2.87
3243 3676 8.853077 TCTGAATTTCACAAGAGAATATGTGT 57.147 30.769 5.88 0.00 45.52 3.72
3287 3720 2.548480 AGAGTTCGCCAAAACTAAGCAC 59.452 45.455 0.00 0.00 39.55 4.40
3460 4176 4.861196 AGCCACAGAGACTTCAGTATCTA 58.139 43.478 3.80 0.00 43.94 1.98
3491 4207 3.242944 CACTAACTTGGTCATACGATGCG 59.757 47.826 0.00 0.00 0.00 4.73
3574 4291 0.107831 TTGGCGTCAGGTAGCACTTT 59.892 50.000 0.00 0.00 34.54 2.66
3600 4317 7.985184 TCCACTGTACTTAATGGATGATTGTAC 59.015 37.037 0.00 0.00 36.30 2.90
3604 4321 7.045416 TGTACTTAATGGATGATTGTACGCTT 58.955 34.615 0.00 0.00 30.89 4.68
3621 4338 2.603412 CGCTTCGCTCAGTCATACTAGG 60.603 54.545 0.00 0.00 0.00 3.02
3643 4360 1.009829 CTAGAACATGAAGCGCACCC 58.990 55.000 11.47 0.00 0.00 4.61
3644 4361 0.739462 TAGAACATGAAGCGCACCCG 60.739 55.000 11.47 0.00 37.57 5.28
3656 4373 1.733360 GCGCACCCGTTAATCTTGTAA 59.267 47.619 0.30 0.00 36.67 2.41
3657 4374 2.160022 GCGCACCCGTTAATCTTGTAAA 59.840 45.455 0.30 0.00 36.67 2.01
3658 4375 3.365164 GCGCACCCGTTAATCTTGTAAAA 60.365 43.478 0.30 0.00 36.67 1.52
3659 4376 4.785417 CGCACCCGTTAATCTTGTAAAAA 58.215 39.130 0.00 0.00 0.00 1.94
3688 4405 9.855021 AATGGTAAAAGTATTTGAGAAAATCCG 57.145 29.630 0.00 0.00 39.02 4.18
3689 4406 7.822658 TGGTAAAAGTATTTGAGAAAATCCGG 58.177 34.615 0.00 0.00 39.02 5.14
3690 4407 7.449086 TGGTAAAAGTATTTGAGAAAATCCGGT 59.551 33.333 0.00 0.00 39.02 5.28
3691 4408 8.301720 GGTAAAAGTATTTGAGAAAATCCGGTT 58.698 33.333 0.00 0.00 39.02 4.44
3694 4411 8.631480 AAAGTATTTGAGAAAATCCGGTTAGT 57.369 30.769 0.00 0.00 36.60 2.24
3695 4412 8.631480 AAGTATTTGAGAAAATCCGGTTAGTT 57.369 30.769 0.00 0.00 0.00 2.24
3696 4413 9.729281 AAGTATTTGAGAAAATCCGGTTAGTTA 57.271 29.630 0.00 0.00 0.00 2.24
3697 4414 9.729281 AGTATTTGAGAAAATCCGGTTAGTTAA 57.271 29.630 0.00 0.00 0.00 2.01
3700 4417 9.687210 ATTTGAGAAAATCCGGTTAGTTAAAAC 57.313 29.630 0.00 0.00 0.00 2.43
3701 4418 7.804843 TGAGAAAATCCGGTTAGTTAAAACA 57.195 32.000 0.00 0.00 0.00 2.83
3702 4419 8.398878 TGAGAAAATCCGGTTAGTTAAAACAT 57.601 30.769 0.00 0.00 0.00 2.71
3703 4420 8.508875 TGAGAAAATCCGGTTAGTTAAAACATC 58.491 33.333 0.00 0.00 0.00 3.06
3704 4421 8.631480 AGAAAATCCGGTTAGTTAAAACATCT 57.369 30.769 0.00 0.00 0.00 2.90
3705 4422 9.729281 AGAAAATCCGGTTAGTTAAAACATCTA 57.271 29.630 0.00 0.00 0.00 1.98
3735 4452 5.849357 TTGAATCATTCAAATTGCAGTGC 57.151 34.783 10.55 8.58 45.94 4.40
3736 4453 4.247258 TGAATCATTCAAATTGCAGTGCC 58.753 39.130 13.72 0.00 36.59 5.01
3737 4454 4.020928 TGAATCATTCAAATTGCAGTGCCT 60.021 37.500 13.72 0.00 36.59 4.75
3738 4455 4.546829 ATCATTCAAATTGCAGTGCCTT 57.453 36.364 13.72 3.23 0.00 4.35
3739 4456 3.655486 TCATTCAAATTGCAGTGCCTTG 58.345 40.909 13.72 13.25 0.00 3.61
3740 4457 3.321396 TCATTCAAATTGCAGTGCCTTGA 59.679 39.130 13.72 15.30 0.00 3.02
3741 4458 4.020928 TCATTCAAATTGCAGTGCCTTGAT 60.021 37.500 19.22 10.63 0.00 2.57
3742 4459 5.185442 TCATTCAAATTGCAGTGCCTTGATA 59.815 36.000 19.22 13.05 0.00 2.15
3743 4460 4.707030 TCAAATTGCAGTGCCTTGATAG 57.293 40.909 13.72 0.00 0.00 2.08
3744 4461 3.119388 TCAAATTGCAGTGCCTTGATAGC 60.119 43.478 13.72 0.00 0.00 2.97
3745 4462 1.019673 ATTGCAGTGCCTTGATAGCG 58.980 50.000 13.72 0.00 0.00 4.26
3746 4463 1.026182 TTGCAGTGCCTTGATAGCGG 61.026 55.000 13.72 0.00 0.00 5.52
3747 4464 2.182842 GCAGTGCCTTGATAGCGGG 61.183 63.158 2.85 0.00 0.00 6.13
3748 4465 2.182842 CAGTGCCTTGATAGCGGGC 61.183 63.158 7.69 7.69 45.45 6.13
3751 4468 4.235762 GCCTTGATAGCGGGCGGA 62.236 66.667 0.00 0.00 36.37 5.54
3752 4469 2.743718 CCTTGATAGCGGGCGGAT 59.256 61.111 0.00 0.00 0.00 4.18
3753 4470 1.374758 CCTTGATAGCGGGCGGATC 60.375 63.158 0.00 2.75 0.00 3.36
3754 4471 1.367471 CTTGATAGCGGGCGGATCA 59.633 57.895 7.06 7.06 0.00 2.92
3755 4472 0.036952 CTTGATAGCGGGCGGATCAT 60.037 55.000 10.66 0.00 30.00 2.45
3756 4473 0.396435 TTGATAGCGGGCGGATCATT 59.604 50.000 10.66 0.00 30.00 2.57
3757 4474 1.262417 TGATAGCGGGCGGATCATTA 58.738 50.000 7.06 0.00 0.00 1.90
3770 4487 7.210873 GGGCGGATCATTATACTCCTATAAAG 58.789 42.308 0.00 0.00 30.20 1.85
3792 4509 0.806868 TGTTGTACTACTCGCCTCCG 59.193 55.000 8.88 0.00 0.00 4.63
3813 4530 2.184322 GGCATCCTCGCTCGTGAA 59.816 61.111 0.00 0.00 0.00 3.18
3819 4536 0.965866 TCCTCGCTCGTGAATGTCCT 60.966 55.000 0.00 0.00 0.00 3.85
3820 4537 0.108615 CCTCGCTCGTGAATGTCCTT 60.109 55.000 0.00 0.00 0.00 3.36
3826 4543 1.154225 CGTGAATGTCCTTTGCGCC 60.154 57.895 4.18 0.00 0.00 6.53
3830 4547 0.039527 GAATGTCCTTTGCGCCGTTT 60.040 50.000 4.18 0.00 0.00 3.60
3877 4594 4.489771 CTTGGCGCCCCCGATCTT 62.490 66.667 26.77 0.00 36.29 2.40
3878 4595 4.483243 TTGGCGCCCCCGATCTTC 62.483 66.667 26.77 0.00 36.29 2.87
3880 4597 4.256180 GGCGCCCCCGATCTTCAT 62.256 66.667 18.11 0.00 36.29 2.57
3881 4598 2.974698 GCGCCCCCGATCTTCATG 60.975 66.667 0.00 0.00 36.29 3.07
3882 4599 2.281070 CGCCCCCGATCTTCATGG 60.281 66.667 0.00 0.00 36.29 3.66
3883 4600 2.113986 GCCCCCGATCTTCATGGG 59.886 66.667 0.00 0.00 42.92 4.00
3884 4601 2.113986 CCCCCGATCTTCATGGGC 59.886 66.667 0.00 0.00 41.88 5.36
3885 4602 2.281070 CCCCGATCTTCATGGGCG 60.281 66.667 0.00 0.00 41.88 6.13
3886 4603 2.974698 CCCGATCTTCATGGGCGC 60.975 66.667 0.00 0.00 35.82 6.53
3887 4604 2.109799 CCGATCTTCATGGGCGCT 59.890 61.111 7.64 0.00 0.00 5.92
3888 4605 1.524621 CCGATCTTCATGGGCGCTT 60.525 57.895 7.64 0.00 0.00 4.68
3889 4606 1.502163 CCGATCTTCATGGGCGCTTC 61.502 60.000 7.64 0.02 0.00 3.86
3890 4607 0.531532 CGATCTTCATGGGCGCTTCT 60.532 55.000 7.64 0.00 0.00 2.85
3891 4608 1.224965 GATCTTCATGGGCGCTTCTC 58.775 55.000 7.64 0.00 0.00 2.87
3892 4609 0.543277 ATCTTCATGGGCGCTTCTCA 59.457 50.000 7.64 1.20 0.00 3.27
3893 4610 0.391661 TCTTCATGGGCGCTTCTCAC 60.392 55.000 7.64 0.00 0.00 3.51
3894 4611 1.372087 CTTCATGGGCGCTTCTCACC 61.372 60.000 7.64 0.00 0.00 4.02
3895 4612 2.819984 TTCATGGGCGCTTCTCACCC 62.820 60.000 7.64 0.00 44.52 4.61
3898 4615 3.056328 GGGCGCTTCTCACCCAAC 61.056 66.667 7.64 0.00 43.64 3.77
3899 4616 3.056328 GGCGCTTCTCACCCAACC 61.056 66.667 7.64 0.00 0.00 3.77
3900 4617 3.423154 GCGCTTCTCACCCAACCG 61.423 66.667 0.00 0.00 0.00 4.44
3901 4618 2.742372 CGCTTCTCACCCAACCGG 60.742 66.667 0.00 0.00 37.81 5.28
3902 4619 3.056328 GCTTCTCACCCAACCGGC 61.056 66.667 0.00 0.00 33.26 6.13
3903 4620 2.750350 CTTCTCACCCAACCGGCT 59.250 61.111 0.00 0.00 33.26 5.52
3904 4621 1.376037 CTTCTCACCCAACCGGCTC 60.376 63.158 0.00 0.00 33.26 4.70
3905 4622 2.804828 CTTCTCACCCAACCGGCTCC 62.805 65.000 0.00 0.00 33.26 4.70
3906 4623 3.322466 CTCACCCAACCGGCTCCT 61.322 66.667 0.00 0.00 33.26 3.69
3907 4624 2.852075 TCACCCAACCGGCTCCTT 60.852 61.111 0.00 0.00 33.26 3.36
3908 4625 2.672996 CACCCAACCGGCTCCTTG 60.673 66.667 0.00 0.00 33.26 3.61
3909 4626 3.966543 ACCCAACCGGCTCCTTGG 61.967 66.667 13.38 13.38 37.30 3.61
3938 4655 0.877649 CCGTCTGATCTTCATGGGCG 60.878 60.000 0.00 0.00 0.00 6.13
3946 4663 0.543277 TCTTCATGGGCGCTTCTCAT 59.457 50.000 7.64 3.79 0.00 2.90
3950 4667 0.749091 CATGGGCGCTTCTCATCCAA 60.749 55.000 7.64 0.00 0.00 3.53
3954 4671 2.464459 GCGCTTCTCATCCAACCGG 61.464 63.158 0.00 0.00 0.00 5.28
3958 4675 1.079405 TTCTCATCCAACCGGCGTC 60.079 57.895 6.01 0.00 0.00 5.19
3961 4678 2.511600 CATCCAACCGGCGTCCTC 60.512 66.667 6.01 0.00 0.00 3.71
3974 4691 1.987855 GTCCTCGGGGTCCATGACA 60.988 63.158 0.00 0.00 33.68 3.58
3982 4699 2.044946 GTCCATGACAGGTGGGCC 60.045 66.667 0.00 0.00 35.30 5.80
4012 5156 0.673437 CCGAGGCCACATTTTTGTGT 59.327 50.000 5.01 0.00 38.07 3.72
4018 5162 6.329496 CGAGGCCACATTTTTGTGTTATATT 58.671 36.000 5.01 0.00 38.07 1.28
4038 5182 0.687354 ATGTCTTTCCTCTGCGTGGT 59.313 50.000 0.00 0.00 0.00 4.16
4069 5213 0.748450 TTGGGTAAGAGCGGGTATCG 59.252 55.000 0.00 0.00 42.76 2.92
4077 5221 0.454600 GAGCGGGTATCGTTCTGTCA 59.545 55.000 0.00 0.00 44.09 3.58
4142 5286 1.897398 GCTAAGCGTGTGTTGGGTCG 61.897 60.000 0.00 0.00 0.00 4.79
4149 5293 0.382873 GTGTGTTGGGTCGTTTTCCC 59.617 55.000 0.00 0.00 44.81 3.97
4202 5346 2.232941 TCAGTGGTTCTCGGTATTCCAC 59.767 50.000 0.00 0.00 45.94 4.02
4269 5413 0.996462 TTCTCGGTTTGCGCTAATCG 59.004 50.000 27.37 27.37 42.12 3.34
4273 5417 1.352056 GGTTTGCGCTAATCGGAGC 59.648 57.895 9.73 0.00 40.33 4.70
4277 5421 4.235762 GCGCTAATCGGAGCCCCA 62.236 66.667 0.00 0.00 39.43 4.96
4282 5426 1.307517 TAATCGGAGCCCCAGGGTT 60.308 57.895 4.22 0.00 37.65 4.11
4283 5427 1.632018 TAATCGGAGCCCCAGGGTTG 61.632 60.000 4.22 0.00 37.65 3.77
4302 5446 2.100991 CCATTTCTCGGCGCTTGC 59.899 61.111 7.64 0.00 38.11 4.01
4312 5456 3.324035 GCGCTTGCCGGATTCTAG 58.676 61.111 5.05 0.00 37.44 2.43
4313 5457 2.247437 GCGCTTGCCGGATTCTAGG 61.247 63.158 5.05 0.00 37.44 3.02
4318 5462 4.534401 GCCGGATTCTAGGCGTTT 57.466 55.556 5.05 0.00 44.22 3.60
4319 5463 2.014594 GCCGGATTCTAGGCGTTTG 58.985 57.895 5.05 0.00 44.22 2.93
4320 5464 0.743345 GCCGGATTCTAGGCGTTTGT 60.743 55.000 5.05 0.00 44.22 2.83
4321 5465 1.287425 CCGGATTCTAGGCGTTTGTC 58.713 55.000 0.00 0.00 0.00 3.18
4322 5466 0.921347 CGGATTCTAGGCGTTTGTCG 59.079 55.000 0.00 0.00 43.12 4.35
4323 5467 1.468565 CGGATTCTAGGCGTTTGTCGA 60.469 52.381 0.00 0.00 42.86 4.20
4324 5468 2.613691 GGATTCTAGGCGTTTGTCGAA 58.386 47.619 0.00 0.00 42.86 3.71
4325 5469 2.347755 GGATTCTAGGCGTTTGTCGAAC 59.652 50.000 0.00 0.00 42.86 3.95
4326 5470 1.787012 TTCTAGGCGTTTGTCGAACC 58.213 50.000 0.00 0.00 42.86 3.62
4327 5471 0.037975 TCTAGGCGTTTGTCGAACCC 60.038 55.000 0.00 0.71 42.86 4.11
4328 5472 1.349259 CTAGGCGTTTGTCGAACCCG 61.349 60.000 0.00 0.00 42.86 5.28
4329 5473 1.804396 TAGGCGTTTGTCGAACCCGA 61.804 55.000 0.00 0.00 43.35 5.14
4337 5481 4.268939 TCGAACCCGACGCGTTGT 62.269 61.111 24.28 14.19 40.30 3.32
4338 5482 4.054455 CGAACCCGACGCGTTGTG 62.054 66.667 24.28 16.47 38.22 3.33
4339 5483 2.963320 GAACCCGACGCGTTGTGT 60.963 61.111 24.28 17.19 0.00 3.72
4340 5484 3.218209 GAACCCGACGCGTTGTGTG 62.218 63.158 24.28 14.66 0.00 3.82
4341 5485 4.517815 ACCCGACGCGTTGTGTGT 62.518 61.111 24.28 15.27 46.04 3.72
4342 5486 3.995669 CCCGACGCGTTGTGTGTG 61.996 66.667 24.28 9.04 42.62 3.82
4343 5487 3.259020 CCGACGCGTTGTGTGTGT 61.259 61.111 24.28 0.00 42.62 3.72
4344 5488 2.054328 CGACGCGTTGTGTGTGTG 60.054 61.111 15.53 0.00 42.62 3.82
4345 5489 2.350760 GACGCGTTGTGTGTGTGC 60.351 61.111 15.53 0.00 42.62 4.57
4347 5491 4.936248 CGCGTTGTGTGTGTGCGG 62.936 66.667 0.00 0.00 44.65 5.69
4348 5492 4.605967 GCGTTGTGTGTGTGCGGG 62.606 66.667 0.00 0.00 0.00 6.13
4349 5493 3.947841 CGTTGTGTGTGTGCGGGG 61.948 66.667 0.00 0.00 0.00 5.73
4350 5494 2.515057 GTTGTGTGTGTGCGGGGA 60.515 61.111 0.00 0.00 0.00 4.81
4351 5495 2.115911 GTTGTGTGTGTGCGGGGAA 61.116 57.895 0.00 0.00 0.00 3.97
4352 5496 1.821759 TTGTGTGTGTGCGGGGAAG 60.822 57.895 0.00 0.00 0.00 3.46
4353 5497 2.978010 GTGTGTGTGCGGGGAAGG 60.978 66.667 0.00 0.00 0.00 3.46
4354 5498 4.263572 TGTGTGTGCGGGGAAGGG 62.264 66.667 0.00 0.00 0.00 3.95
4375 5519 3.566351 GGGGGTTCCTTGATATCTTTGG 58.434 50.000 3.98 3.86 0.00 3.28
4376 5520 3.566351 GGGGTTCCTTGATATCTTTGGG 58.434 50.000 3.98 1.50 0.00 4.12
4377 5521 3.566351 GGGTTCCTTGATATCTTTGGGG 58.434 50.000 3.98 0.00 0.00 4.96
4378 5522 3.204382 GGGTTCCTTGATATCTTTGGGGA 59.796 47.826 3.98 2.11 0.00 4.81
4379 5523 4.464947 GGTTCCTTGATATCTTTGGGGAG 58.535 47.826 3.98 0.00 0.00 4.30
4380 5524 4.464947 GTTCCTTGATATCTTTGGGGAGG 58.535 47.826 3.98 1.06 0.00 4.30
4381 5525 3.747852 TCCTTGATATCTTTGGGGAGGT 58.252 45.455 3.98 0.00 0.00 3.85
4382 5526 4.119155 TCCTTGATATCTTTGGGGAGGTT 58.881 43.478 3.98 0.00 0.00 3.50
4383 5527 5.293643 TCCTTGATATCTTTGGGGAGGTTA 58.706 41.667 3.98 0.00 0.00 2.85
4384 5528 5.917087 TCCTTGATATCTTTGGGGAGGTTAT 59.083 40.000 3.98 0.00 0.00 1.89
4385 5529 6.392842 TCCTTGATATCTTTGGGGAGGTTATT 59.607 38.462 3.98 0.00 0.00 1.40
4386 5530 6.717084 CCTTGATATCTTTGGGGAGGTTATTC 59.283 42.308 3.98 0.00 0.00 1.75
4387 5531 5.865085 TGATATCTTTGGGGAGGTTATTCG 58.135 41.667 3.98 0.00 0.00 3.34
4388 5532 3.577805 ATCTTTGGGGAGGTTATTCGG 57.422 47.619 0.00 0.00 0.00 4.30
4389 5533 1.064979 TCTTTGGGGAGGTTATTCGGC 60.065 52.381 0.00 0.00 0.00 5.54
4390 5534 0.996583 TTTGGGGAGGTTATTCGGCT 59.003 50.000 0.00 0.00 0.00 5.52
4391 5535 0.996583 TTGGGGAGGTTATTCGGCTT 59.003 50.000 0.00 0.00 0.00 4.35
4392 5536 0.254747 TGGGGAGGTTATTCGGCTTG 59.745 55.000 0.00 0.00 0.00 4.01
4393 5537 0.255033 GGGGAGGTTATTCGGCTTGT 59.745 55.000 0.00 0.00 0.00 3.16
4394 5538 1.379527 GGGAGGTTATTCGGCTTGTG 58.620 55.000 0.00 0.00 0.00 3.33
4395 5539 0.733150 GGAGGTTATTCGGCTTGTGC 59.267 55.000 0.00 0.00 38.76 4.57
4396 5540 0.373716 GAGGTTATTCGGCTTGTGCG 59.626 55.000 0.00 0.00 40.82 5.34
4397 5541 0.036765 AGGTTATTCGGCTTGTGCGA 60.037 50.000 0.00 0.00 40.82 5.10
4398 5542 0.373716 GGTTATTCGGCTTGTGCGAG 59.626 55.000 0.00 0.00 40.82 5.03
4399 5543 1.076332 GTTATTCGGCTTGTGCGAGT 58.924 50.000 0.00 0.00 40.82 4.18
4400 5544 1.060698 GTTATTCGGCTTGTGCGAGTC 59.939 52.381 0.00 0.00 40.82 3.36
4401 5545 0.530744 TATTCGGCTTGTGCGAGTCT 59.469 50.000 0.00 0.00 40.82 3.24
4402 5546 0.530744 ATTCGGCTTGTGCGAGTCTA 59.469 50.000 0.00 0.00 40.82 2.59
4403 5547 0.315886 TTCGGCTTGTGCGAGTCTAA 59.684 50.000 0.00 0.00 40.82 2.10
4404 5548 0.109272 TCGGCTTGTGCGAGTCTAAG 60.109 55.000 0.00 0.00 40.82 2.18
4405 5549 0.388649 CGGCTTGTGCGAGTCTAAGT 60.389 55.000 0.00 0.00 40.82 2.24
4406 5550 1.071605 GGCTTGTGCGAGTCTAAGTG 58.928 55.000 0.00 0.00 40.82 3.16
4407 5551 0.440371 GCTTGTGCGAGTCTAAGTGC 59.560 55.000 0.00 0.00 0.00 4.40
4408 5552 1.937108 GCTTGTGCGAGTCTAAGTGCT 60.937 52.381 0.00 0.00 0.00 4.40
4409 5553 2.408050 CTTGTGCGAGTCTAAGTGCTT 58.592 47.619 0.00 0.00 0.00 3.91
4410 5554 2.065993 TGTGCGAGTCTAAGTGCTTC 57.934 50.000 0.00 0.00 0.00 3.86
4411 5555 0.985549 GTGCGAGTCTAAGTGCTTCG 59.014 55.000 0.00 0.00 0.00 3.79
4412 5556 0.596577 TGCGAGTCTAAGTGCTTCGT 59.403 50.000 0.00 0.00 0.00 3.85
4413 5557 1.000607 TGCGAGTCTAAGTGCTTCGTT 60.001 47.619 0.00 0.00 0.00 3.85
4414 5558 1.649662 GCGAGTCTAAGTGCTTCGTTC 59.350 52.381 0.00 0.00 0.00 3.95
4415 5559 2.921069 GCGAGTCTAAGTGCTTCGTTCA 60.921 50.000 0.00 0.00 0.00 3.18
4416 5560 3.305964 CGAGTCTAAGTGCTTCGTTCAA 58.694 45.455 0.00 0.00 0.00 2.69
4417 5561 3.119792 CGAGTCTAAGTGCTTCGTTCAAC 59.880 47.826 0.00 0.00 0.00 3.18
4418 5562 4.049186 GAGTCTAAGTGCTTCGTTCAACA 58.951 43.478 0.00 0.00 0.00 3.33
4419 5563 4.439057 AGTCTAAGTGCTTCGTTCAACAA 58.561 39.130 0.00 0.00 0.00 2.83
4420 5564 4.270325 AGTCTAAGTGCTTCGTTCAACAAC 59.730 41.667 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 5.016831 TGCAGAGAAACATACTAGTGGAGA 58.983 41.667 5.39 0.00 0.00 3.71
65 66 3.141398 TGAGGTGAATGTGCAGAGAAAC 58.859 45.455 0.00 0.00 0.00 2.78
153 154 8.498575 TGAATAGGTGGTATGTTTTCATGGATA 58.501 33.333 0.00 0.00 41.09 2.59
164 166 4.755411 CGTGACTTGAATAGGTGGTATGT 58.245 43.478 0.00 0.00 0.00 2.29
168 170 1.346395 TGCGTGACTTGAATAGGTGGT 59.654 47.619 0.00 0.00 0.00 4.16
174 176 5.334802 CCAAAAGACATGCGTGACTTGAATA 60.335 40.000 21.48 0.00 39.63 1.75
176 178 3.243035 CCAAAAGACATGCGTGACTTGAA 60.243 43.478 21.48 0.00 39.63 2.69
180 182 1.238439 CCCAAAAGACATGCGTGACT 58.762 50.000 14.17 9.29 31.67 3.41
183 185 1.586028 CCCCCAAAAGACATGCGTG 59.414 57.895 3.82 3.82 0.00 5.34
273 276 6.007076 TGCTCCAAGTTTCCACAACATATAA 58.993 36.000 0.00 0.00 0.00 0.98
274 277 5.565509 TGCTCCAAGTTTCCACAACATATA 58.434 37.500 0.00 0.00 0.00 0.86
281 284 5.304101 ACATATTTTGCTCCAAGTTTCCACA 59.696 36.000 0.00 0.00 0.00 4.17
282 285 5.783111 ACATATTTTGCTCCAAGTTTCCAC 58.217 37.500 0.00 0.00 0.00 4.02
289 292 6.694411 GCATGAACTACATATTTTGCTCCAAG 59.306 38.462 0.00 0.00 37.46 3.61
304 307 3.057315 ACACAATGGCAAGCATGAACTAC 60.057 43.478 0.00 0.00 0.00 2.73
307 310 2.443887 ACACAATGGCAAGCATGAAC 57.556 45.000 0.00 0.00 0.00 3.18
345 348 8.504005 CCTACAAAGTATCTGACAAAACGATTT 58.496 33.333 0.00 0.00 0.00 2.17
347 350 7.159372 ACCTACAAAGTATCTGACAAAACGAT 58.841 34.615 0.00 0.00 0.00 3.73
348 351 6.518493 ACCTACAAAGTATCTGACAAAACGA 58.482 36.000 0.00 0.00 0.00 3.85
349 352 6.780706 ACCTACAAAGTATCTGACAAAACG 57.219 37.500 0.00 0.00 0.00 3.60
350 353 9.797556 AAAAACCTACAAAGTATCTGACAAAAC 57.202 29.630 0.00 0.00 0.00 2.43
379 390 7.469456 GCAAGAGTGTTCTGGGTTTACATTTAA 60.469 37.037 0.00 0.00 32.79 1.52
380 391 6.016610 GCAAGAGTGTTCTGGGTTTACATTTA 60.017 38.462 0.00 0.00 32.79 1.40
390 401 2.624838 ACAAATGCAAGAGTGTTCTGGG 59.375 45.455 0.00 0.00 32.79 4.45
393 404 5.812127 GGAAAAACAAATGCAAGAGTGTTCT 59.188 36.000 0.00 0.00 33.18 3.01
394 405 5.580297 TGGAAAAACAAATGCAAGAGTGTTC 59.420 36.000 0.00 0.00 33.18 3.18
400 411 8.729805 AAACTAATGGAAAAACAAATGCAAGA 57.270 26.923 0.00 0.00 0.00 3.02
447 458 7.432869 GCAGGAACCACATTAAAATATGCATA 58.567 34.615 9.27 9.27 0.00 3.14
478 491 5.284864 ACAATGAGCTCATATCACTACACG 58.715 41.667 28.92 9.95 35.10 4.49
479 492 7.545362 AAACAATGAGCTCATATCACTACAC 57.455 36.000 28.92 0.00 35.10 2.90
500 553 8.868916 TGAGAGAAAAATAAGCACAACAAAAAC 58.131 29.630 0.00 0.00 0.00 2.43
505 558 6.183360 TGCTTGAGAGAAAAATAAGCACAACA 60.183 34.615 5.92 0.00 46.02 3.33
677 730 2.224426 TGAACCACGCAATTAGAGGTGT 60.224 45.455 3.65 0.00 32.98 4.16
691 744 2.028385 ACCTAACACTCGGATGAACCAC 60.028 50.000 0.00 0.00 38.90 4.16
825 878 3.057315 CCTGAAATCAGTTTGCCAACGAT 60.057 43.478 9.43 0.00 42.27 3.73
896 949 0.468226 ACAAGACAGGAGGTTTGCGA 59.532 50.000 0.00 0.00 0.00 5.10
910 963 1.066858 GGAGGATCACAGCGAACAAGA 60.067 52.381 0.00 0.00 36.25 3.02
918 971 1.471684 CTTGCTTTGGAGGATCACAGC 59.528 52.381 0.00 0.00 39.95 4.40
928 981 1.604593 GGCTGGCTCTTGCTTTGGA 60.605 57.895 0.00 0.00 39.59 3.53
931 984 0.823356 TTTCGGCTGGCTCTTGCTTT 60.823 50.000 0.00 0.00 39.59 3.51
1055 1108 2.659016 CCTGCGCAGAGGACTTGA 59.341 61.111 38.06 0.00 34.69 3.02
1227 1298 0.249911 GTTGGTGAGAAGTGGACGCT 60.250 55.000 0.00 0.00 0.00 5.07
1252 1323 2.124736 ATCACCAACGCCGATGGG 60.125 61.111 18.04 6.92 42.48 4.00
1255 1326 2.046411 TGCATCACCAACGCCGAT 60.046 55.556 0.00 0.00 0.00 4.18
1690 1910 6.197468 ACAACCAAAAATCGTTGATAAACACG 59.803 34.615 6.91 0.00 41.53 4.49
1702 1922 6.582437 AAGCTAAACAACAACCAAAAATCG 57.418 33.333 0.00 0.00 0.00 3.34
1950 2191 5.839621 CAATAGATGCTAGCTGGCAAAAAT 58.160 37.500 29.29 17.94 45.68 1.82
2172 2429 0.746659 GAAGTGGCTGCAAAACCAGT 59.253 50.000 0.50 4.06 41.48 4.00
2220 2477 8.288208 ACGAGGTCAGTAATATATTCTACAACG 58.712 37.037 0.00 8.00 0.00 4.10
2233 2490 6.649557 CCAGAAAAACTTACGAGGTCAGTAAT 59.350 38.462 0.00 0.00 34.10 1.89
2306 2663 5.722021 ATTTGAATTTACTGTCCACACCC 57.278 39.130 0.00 0.00 0.00 4.61
2389 2746 5.006165 GTCCAAACATCACGAATTTTTGCAA 59.994 36.000 0.00 0.00 34.89 4.08
2400 2757 3.501828 TCCTTGAATGTCCAAACATCACG 59.498 43.478 0.00 0.00 45.48 4.35
2406 2763 5.048713 CCACTAACTCCTTGAATGTCCAAAC 60.049 44.000 0.00 0.00 0.00 2.93
2526 2885 3.234386 GCGCAAGGAGTGTACAAATTTC 58.766 45.455 0.30 0.00 38.28 2.17
2534 2893 1.292223 GAGGTGCGCAAGGAGTGTA 59.708 57.895 14.00 0.00 39.66 2.90
2545 2904 1.063616 CATCAAAGATGCTGAGGTGCG 59.936 52.381 0.00 0.00 35.36 5.34
2602 2961 6.985188 TCTGCACCTAATGAACAGTAATTC 57.015 37.500 0.00 0.00 0.00 2.17
2603 2962 7.112122 TCATCTGCACCTAATGAACAGTAATT 58.888 34.615 0.00 0.00 0.00 1.40
2604 2963 6.653020 TCATCTGCACCTAATGAACAGTAAT 58.347 36.000 0.00 0.00 0.00 1.89
2608 2981 3.311871 GCTCATCTGCACCTAATGAACAG 59.688 47.826 0.00 0.00 0.00 3.16
2616 2989 2.434843 CCGGGCTCATCTGCACCTA 61.435 63.158 0.00 0.00 31.60 3.08
2617 2990 3.790437 CCGGGCTCATCTGCACCT 61.790 66.667 0.00 0.00 31.60 4.00
2632 3005 1.645455 CAATTCGCATCTGAGCCCG 59.355 57.895 0.00 0.00 0.00 6.13
2635 3008 1.586422 TAGGCAATTCGCATCTGAGC 58.414 50.000 0.00 0.00 45.17 4.26
2636 3009 3.136763 ACATAGGCAATTCGCATCTGAG 58.863 45.455 6.82 0.00 45.17 3.35
2637 3010 3.198409 ACATAGGCAATTCGCATCTGA 57.802 42.857 6.82 0.00 45.17 3.27
2638 3011 3.976793 AACATAGGCAATTCGCATCTG 57.023 42.857 0.00 1.80 45.17 2.90
2639 3012 3.067180 CCAAACATAGGCAATTCGCATCT 59.933 43.478 0.00 0.00 45.17 2.90
2640 3013 3.374745 CCAAACATAGGCAATTCGCATC 58.625 45.455 0.00 0.00 45.17 3.91
2641 3014 3.441496 CCAAACATAGGCAATTCGCAT 57.559 42.857 0.00 0.00 45.17 4.73
2642 3015 2.937469 CCAAACATAGGCAATTCGCA 57.063 45.000 0.00 0.00 45.17 5.10
2679 3052 8.426489 GTTTAGATCACTAGAGAGTAGAGAGGA 58.574 40.741 0.00 0.00 33.32 3.71
2685 3058 6.704493 AGAGCGTTTAGATCACTAGAGAGTAG 59.296 42.308 0.00 0.00 37.82 2.57
2688 3061 6.371809 AAGAGCGTTTAGATCACTAGAGAG 57.628 41.667 0.00 0.00 37.82 3.20
2689 3062 9.727859 ATATAAGAGCGTTTAGATCACTAGAGA 57.272 33.333 0.00 0.00 37.82 3.10
2850 3252 7.450074 TCAGTGACCTAATTGTATCTGTTTGT 58.550 34.615 0.00 0.00 0.00 2.83
2901 3304 4.053983 CGTACAGTGCAAGATGCTGATAT 58.946 43.478 8.15 0.00 45.31 1.63
2902 3305 3.130340 TCGTACAGTGCAAGATGCTGATA 59.870 43.478 8.15 0.00 45.31 2.15
2958 3361 5.367937 AGGTAGATGGTGCTCATTTGTCTAT 59.632 40.000 0.00 0.00 35.97 1.98
3095 3520 6.061022 TCACTCAGCTATGGAACCATAAAA 57.939 37.500 13.51 0.00 38.30 1.52
3235 3668 7.651808 CACAAGTGAAGAGGAAAACACATATT 58.348 34.615 0.00 0.00 35.97 1.28
3236 3669 6.294176 GCACAAGTGAAGAGGAAAACACATAT 60.294 38.462 4.04 0.00 35.97 1.78
3243 3676 2.687935 GTGGCACAAGTGAAGAGGAAAA 59.312 45.455 13.86 0.00 44.16 2.29
3460 4176 7.494625 CGTATGACCAAGTTAGTGGAATATTGT 59.505 37.037 0.00 0.00 41.65 2.71
3491 4207 2.754552 TGGCATCCAACTGAAGCAATAC 59.245 45.455 0.00 0.00 39.44 1.89
3574 4291 6.957631 ACAATCATCCATTAAGTACAGTGGA 58.042 36.000 9.86 9.86 44.22 4.02
3604 4321 1.676529 GTGCCTAGTATGACTGAGCGA 59.323 52.381 0.00 0.00 32.36 4.93
3621 4338 1.078709 TGCGCTTCATGTTCTAGTGC 58.921 50.000 9.73 14.12 43.72 4.40
3627 4344 1.852067 AACGGGTGCGCTTCATGTTC 61.852 55.000 9.73 0.00 0.00 3.18
3662 4379 9.855021 CGGATTTTCTCAAATACTTTTACCATT 57.145 29.630 0.00 0.00 31.55 3.16
3663 4380 8.466798 CCGGATTTTCTCAAATACTTTTACCAT 58.533 33.333 0.00 0.00 31.55 3.55
3664 4381 7.449086 ACCGGATTTTCTCAAATACTTTTACCA 59.551 33.333 9.46 0.00 31.55 3.25
3665 4382 7.823665 ACCGGATTTTCTCAAATACTTTTACC 58.176 34.615 9.46 0.00 31.55 2.85
3668 4385 9.074576 ACTAACCGGATTTTCTCAAATACTTTT 57.925 29.630 9.46 0.00 31.55 2.27
3669 4386 8.631480 ACTAACCGGATTTTCTCAAATACTTT 57.369 30.769 9.46 0.00 31.55 2.66
3670 4387 8.631480 AACTAACCGGATTTTCTCAAATACTT 57.369 30.769 9.46 0.00 31.55 2.24
3674 4391 9.687210 GTTTTAACTAACCGGATTTTCTCAAAT 57.313 29.630 9.46 0.00 35.12 2.32
3676 4393 8.223177 TGTTTTAACTAACCGGATTTTCTCAA 57.777 30.769 9.46 0.00 0.00 3.02
3677 4394 7.804843 TGTTTTAACTAACCGGATTTTCTCA 57.195 32.000 9.46 0.00 0.00 3.27
3713 4430 5.511716 AGGCACTGCAATTTGAATGATTCAA 60.512 36.000 16.04 16.04 42.78 2.69
3714 4431 4.020928 AGGCACTGCAATTTGAATGATTCA 60.021 37.500 3.29 3.29 37.18 2.57
3715 4432 4.501071 AGGCACTGCAATTTGAATGATTC 58.499 39.130 2.82 0.00 37.18 2.52
3716 4433 4.546829 AGGCACTGCAATTTGAATGATT 57.453 36.364 2.82 0.00 37.18 2.57
3717 4434 4.020928 TCAAGGCACTGCAATTTGAATGAT 60.021 37.500 2.82 0.00 40.86 2.45
3718 4435 3.321396 TCAAGGCACTGCAATTTGAATGA 59.679 39.130 2.82 0.00 40.86 2.57
3719 4436 3.655486 TCAAGGCACTGCAATTTGAATG 58.345 40.909 2.82 0.00 40.86 2.67
3720 4437 4.546829 ATCAAGGCACTGCAATTTGAAT 57.453 36.364 14.81 5.67 40.86 2.57
3721 4438 4.618927 GCTATCAAGGCACTGCAATTTGAA 60.619 41.667 14.81 0.00 40.86 2.69
3722 4439 3.119388 GCTATCAAGGCACTGCAATTTGA 60.119 43.478 13.77 13.77 40.86 2.69
3723 4440 3.184541 GCTATCAAGGCACTGCAATTTG 58.815 45.455 2.82 4.81 40.86 2.32
3724 4441 2.159338 CGCTATCAAGGCACTGCAATTT 60.159 45.455 2.82 0.00 40.86 1.82
3725 4442 1.402968 CGCTATCAAGGCACTGCAATT 59.597 47.619 2.82 0.00 40.86 2.32
3726 4443 1.019673 CGCTATCAAGGCACTGCAAT 58.980 50.000 2.82 0.00 40.86 3.56
3727 4444 1.026182 CCGCTATCAAGGCACTGCAA 61.026 55.000 2.82 0.00 40.86 4.08
3728 4445 1.450134 CCGCTATCAAGGCACTGCA 60.450 57.895 2.82 0.00 40.86 4.41
3729 4446 2.182842 CCCGCTATCAAGGCACTGC 61.183 63.158 0.00 0.00 40.86 4.40
3730 4447 2.182842 GCCCGCTATCAAGGCACTG 61.183 63.158 0.00 0.00 46.34 3.66
3731 4448 2.190578 GCCCGCTATCAAGGCACT 59.809 61.111 0.00 0.00 46.34 4.40
3734 4451 3.537206 ATCCGCCCGCTATCAAGGC 62.537 63.158 0.00 0.00 43.53 4.35
3735 4452 1.374758 GATCCGCCCGCTATCAAGG 60.375 63.158 0.00 0.00 0.00 3.61
3736 4453 0.036952 ATGATCCGCCCGCTATCAAG 60.037 55.000 7.64 0.00 33.60 3.02
3737 4454 0.396435 AATGATCCGCCCGCTATCAA 59.604 50.000 7.64 0.00 33.60 2.57
3738 4455 1.262417 TAATGATCCGCCCGCTATCA 58.738 50.000 6.46 6.46 34.35 2.15
3739 4456 2.604046 ATAATGATCCGCCCGCTATC 57.396 50.000 0.00 0.00 0.00 2.08
3740 4457 3.031736 AGTATAATGATCCGCCCGCTAT 58.968 45.455 0.00 0.00 0.00 2.97
3741 4458 2.426024 GAGTATAATGATCCGCCCGCTA 59.574 50.000 0.00 0.00 0.00 4.26
3742 4459 1.204941 GAGTATAATGATCCGCCCGCT 59.795 52.381 0.00 0.00 0.00 5.52
3743 4460 1.641577 GAGTATAATGATCCGCCCGC 58.358 55.000 0.00 0.00 0.00 6.13
3744 4461 1.825474 AGGAGTATAATGATCCGCCCG 59.175 52.381 0.00 0.00 38.20 6.13
3745 4462 6.726490 TTATAGGAGTATAATGATCCGCCC 57.274 41.667 0.00 0.00 38.20 6.13
3746 4463 7.069578 TCCTTTATAGGAGTATAATGATCCGCC 59.930 40.741 0.00 0.00 45.82 6.13
3747 4464 8.008513 TCCTTTATAGGAGTATAATGATCCGC 57.991 38.462 0.00 0.00 45.82 5.54
3770 4487 2.223758 GGAGGCGAGTAGTACAACATCC 60.224 54.545 2.52 4.34 0.00 3.51
3806 4523 0.179215 GCGCAAAGGACATTCACGAG 60.179 55.000 0.30 0.00 0.00 4.18
3813 4530 1.169661 TCAAACGGCGCAAAGGACAT 61.170 50.000 10.83 0.00 0.00 3.06
3819 4536 1.284408 GTGGATCAAACGGCGCAAA 59.716 52.632 10.83 0.00 0.00 3.68
3820 4537 2.950673 GTGGATCAAACGGCGCAA 59.049 55.556 10.83 0.00 0.00 4.85
3826 4543 1.129809 GACACGCGTGGATCAAACG 59.870 57.895 39.21 14.75 43.81 3.60
3830 4547 2.027073 GCAAGACACGCGTGGATCA 61.027 57.895 39.21 0.00 34.19 2.92
3864 4581 2.974698 CATGAAGATCGGGGGCGC 60.975 66.667 0.00 0.00 0.00 6.53
3865 4582 2.281070 CCATGAAGATCGGGGGCG 60.281 66.667 0.00 0.00 0.00 6.13
3866 4583 2.113986 CCCATGAAGATCGGGGGC 59.886 66.667 0.00 0.00 36.90 5.80
3867 4584 2.113986 GCCCATGAAGATCGGGGG 59.886 66.667 4.95 5.52 41.07 5.40
3868 4585 2.281070 CGCCCATGAAGATCGGGG 60.281 66.667 4.95 5.21 43.72 5.73
3869 4586 2.947938 AAGCGCCCATGAAGATCGGG 62.948 60.000 2.29 0.00 43.42 5.14
3870 4587 1.502163 GAAGCGCCCATGAAGATCGG 61.502 60.000 2.29 0.00 0.00 4.18
3871 4588 0.531532 AGAAGCGCCCATGAAGATCG 60.532 55.000 2.29 0.00 0.00 3.69
3872 4589 1.224965 GAGAAGCGCCCATGAAGATC 58.775 55.000 2.29 0.00 0.00 2.75
3873 4590 0.543277 TGAGAAGCGCCCATGAAGAT 59.457 50.000 2.29 0.00 0.00 2.40
3874 4591 0.391661 GTGAGAAGCGCCCATGAAGA 60.392 55.000 2.29 0.00 0.00 2.87
3875 4592 1.372087 GGTGAGAAGCGCCCATGAAG 61.372 60.000 2.29 0.00 41.49 3.02
3876 4593 1.377202 GGTGAGAAGCGCCCATGAA 60.377 57.895 2.29 0.00 41.49 2.57
3877 4594 2.268920 GGTGAGAAGCGCCCATGA 59.731 61.111 2.29 0.00 41.49 3.07
3882 4599 3.056328 GGTTGGGTGAGAAGCGCC 61.056 66.667 2.29 0.00 46.77 6.53
3883 4600 3.423154 CGGTTGGGTGAGAAGCGC 61.423 66.667 0.00 0.00 37.48 5.92
3884 4601 2.742372 CCGGTTGGGTGAGAAGCG 60.742 66.667 0.00 0.00 42.47 4.68
3885 4602 3.056328 GCCGGTTGGGTGAGAAGC 61.056 66.667 1.90 0.00 38.44 3.86
3886 4603 2.750350 AGCCGGTTGGGTGAGAAG 59.250 61.111 1.90 0.00 46.48 2.85
3919 4636 0.877649 CGCCCATGAAGATCAGACGG 60.878 60.000 0.00 0.00 0.00 4.79
3924 4641 0.543277 AGAAGCGCCCATGAAGATCA 59.457 50.000 2.29 0.00 0.00 2.92
3938 4655 2.464459 CGCCGGTTGGATGAGAAGC 61.464 63.158 1.90 0.00 37.49 3.86
3954 4671 4.530857 CATGGACCCCGAGGACGC 62.531 72.222 0.00 0.00 38.29 5.19
3958 4675 2.735772 CCTGTCATGGACCCCGAGG 61.736 68.421 0.00 0.00 40.04 4.63
3961 4678 2.268920 CACCTGTCATGGACCCCG 59.731 66.667 0.00 0.00 0.00 5.73
3994 5138 2.507339 AACACAAAAATGTGGCCTCG 57.493 45.000 3.32 0.00 43.59 4.63
3996 5140 8.757877 ACATAATATAACACAAAAATGTGGCCT 58.242 29.630 3.32 0.96 43.59 5.19
4012 5156 6.929049 CCACGCAGAGGAAAGACATAATATAA 59.071 38.462 0.00 0.00 42.26 0.98
4018 5162 1.899814 ACCACGCAGAGGAAAGACATA 59.100 47.619 0.00 0.00 42.26 2.29
4038 5182 4.651778 CTCTTACCCAACACAGGAAATGA 58.348 43.478 0.00 0.00 0.00 2.57
4069 5213 1.965930 TGCCCACGCATGACAGAAC 60.966 57.895 0.00 0.00 41.12 3.01
4089 5233 0.328258 CTAGTGGTGGGAAGGGGTTG 59.672 60.000 0.00 0.00 0.00 3.77
4091 5235 1.229853 CCTAGTGGTGGGAAGGGGT 60.230 63.158 0.00 0.00 0.00 4.95
4094 5238 0.035056 CAAGCCTAGTGGTGGGAAGG 60.035 60.000 0.00 0.00 35.27 3.46
4098 5242 1.604378 CTCCAAGCCTAGTGGTGGG 59.396 63.158 0.00 0.00 37.43 4.61
4215 5359 2.574929 CACGCGGGGTAGTAGCAA 59.425 61.111 12.47 0.00 0.00 3.91
4227 5371 4.609018 CCTGGCTATCCCCACGCG 62.609 72.222 3.53 3.53 0.00 6.01
4273 5417 1.989508 GAAATGGCCAACCCTGGGG 60.990 63.158 18.88 7.87 43.74 4.96
4277 5421 1.000896 CCGAGAAATGGCCAACCCT 60.001 57.895 10.96 6.69 33.59 4.34
4302 5446 1.287425 GACAAACGCCTAGAATCCGG 58.713 55.000 0.00 0.00 0.00 5.14
4303 5447 0.921347 CGACAAACGCCTAGAATCCG 59.079 55.000 0.00 0.00 34.51 4.18
4304 5448 2.288961 TCGACAAACGCCTAGAATCC 57.711 50.000 0.00 0.00 42.26 3.01
4305 5449 2.347755 GGTTCGACAAACGCCTAGAATC 59.652 50.000 0.00 0.00 42.26 2.52
4306 5450 2.344025 GGTTCGACAAACGCCTAGAAT 58.656 47.619 0.00 0.00 42.26 2.40
4307 5451 1.606224 GGGTTCGACAAACGCCTAGAA 60.606 52.381 0.00 0.00 43.19 2.10
4308 5452 0.037975 GGGTTCGACAAACGCCTAGA 60.038 55.000 0.00 0.00 43.19 2.43
4309 5453 1.349259 CGGGTTCGACAAACGCCTAG 61.349 60.000 0.00 0.00 45.46 3.02
4310 5454 1.373246 CGGGTTCGACAAACGCCTA 60.373 57.895 0.00 0.00 45.46 3.93
4311 5455 2.663852 CGGGTTCGACAAACGCCT 60.664 61.111 0.00 0.00 45.46 5.52
4312 5456 2.662527 TCGGGTTCGACAAACGCC 60.663 61.111 0.00 0.00 45.46 5.68
4320 5464 4.268939 ACAACGCGTCGGGTTCGA 62.269 61.111 23.09 0.00 43.86 3.71
4321 5465 4.054455 CACAACGCGTCGGGTTCG 62.054 66.667 23.09 19.43 36.59 3.95
4322 5466 2.963320 ACACAACGCGTCGGGTTC 60.963 61.111 23.09 0.00 36.59 3.62
4323 5467 3.266376 CACACAACGCGTCGGGTT 61.266 61.111 20.63 20.63 39.22 4.11
4324 5468 4.517815 ACACACAACGCGTCGGGT 62.518 61.111 14.44 5.34 0.00 5.28
4325 5469 3.995669 CACACACAACGCGTCGGG 61.996 66.667 14.44 4.35 0.00 5.14
4326 5470 3.259020 ACACACACAACGCGTCGG 61.259 61.111 14.44 11.19 0.00 4.79
4327 5471 2.054328 CACACACACAACGCGTCG 60.054 61.111 14.44 2.72 0.00 5.12
4328 5472 2.350760 GCACACACACAACGCGTC 60.351 61.111 14.44 0.00 0.00 5.19
4329 5473 4.217111 CGCACACACACAACGCGT 62.217 61.111 5.58 5.58 40.99 6.01
4330 5474 4.936248 CCGCACACACACAACGCG 62.936 66.667 3.53 3.53 45.25 6.01
4331 5475 4.605967 CCCGCACACACACAACGC 62.606 66.667 0.00 0.00 0.00 4.84
4332 5476 3.947841 CCCCGCACACACACAACG 61.948 66.667 0.00 0.00 0.00 4.10
4333 5477 2.058829 CTTCCCCGCACACACACAAC 62.059 60.000 0.00 0.00 0.00 3.32
4334 5478 1.821759 CTTCCCCGCACACACACAA 60.822 57.895 0.00 0.00 0.00 3.33
4335 5479 2.203139 CTTCCCCGCACACACACA 60.203 61.111 0.00 0.00 0.00 3.72
4336 5480 2.978010 CCTTCCCCGCACACACAC 60.978 66.667 0.00 0.00 0.00 3.82
4337 5481 4.263572 CCCTTCCCCGCACACACA 62.264 66.667 0.00 0.00 0.00 3.72
4354 5498 3.566351 CCAAAGATATCAAGGAACCCCC 58.434 50.000 5.32 0.00 0.00 5.40
4355 5499 3.566351 CCCAAAGATATCAAGGAACCCC 58.434 50.000 5.32 0.00 0.00 4.95
4356 5500 3.204382 TCCCCAAAGATATCAAGGAACCC 59.796 47.826 5.32 0.00 0.00 4.11
4357 5501 4.464947 CTCCCCAAAGATATCAAGGAACC 58.535 47.826 5.32 0.00 0.00 3.62
4358 5502 4.079730 ACCTCCCCAAAGATATCAAGGAAC 60.080 45.833 5.32 0.00 0.00 3.62
4359 5503 4.119155 ACCTCCCCAAAGATATCAAGGAA 58.881 43.478 5.32 0.00 0.00 3.36
4360 5504 3.747852 ACCTCCCCAAAGATATCAAGGA 58.252 45.455 5.32 2.71 0.00 3.36
4361 5505 4.526438 AACCTCCCCAAAGATATCAAGG 57.474 45.455 5.32 3.46 0.00 3.61
4362 5506 6.428159 CGAATAACCTCCCCAAAGATATCAAG 59.572 42.308 5.32 0.00 0.00 3.02
4363 5507 6.296026 CGAATAACCTCCCCAAAGATATCAA 58.704 40.000 5.32 0.00 0.00 2.57
4364 5508 5.221843 CCGAATAACCTCCCCAAAGATATCA 60.222 44.000 5.32 0.00 0.00 2.15
4365 5509 5.246307 CCGAATAACCTCCCCAAAGATATC 58.754 45.833 0.00 0.00 0.00 1.63
4366 5510 4.506802 GCCGAATAACCTCCCCAAAGATAT 60.507 45.833 0.00 0.00 0.00 1.63
4367 5511 3.181448 GCCGAATAACCTCCCCAAAGATA 60.181 47.826 0.00 0.00 0.00 1.98
4368 5512 2.422945 GCCGAATAACCTCCCCAAAGAT 60.423 50.000 0.00 0.00 0.00 2.40
4369 5513 1.064979 GCCGAATAACCTCCCCAAAGA 60.065 52.381 0.00 0.00 0.00 2.52
4370 5514 1.064685 AGCCGAATAACCTCCCCAAAG 60.065 52.381 0.00 0.00 0.00 2.77
4371 5515 0.996583 AGCCGAATAACCTCCCCAAA 59.003 50.000 0.00 0.00 0.00 3.28
4372 5516 0.996583 AAGCCGAATAACCTCCCCAA 59.003 50.000 0.00 0.00 0.00 4.12
4373 5517 0.254747 CAAGCCGAATAACCTCCCCA 59.745 55.000 0.00 0.00 0.00 4.96
4374 5518 0.255033 ACAAGCCGAATAACCTCCCC 59.745 55.000 0.00 0.00 0.00 4.81
4375 5519 1.379527 CACAAGCCGAATAACCTCCC 58.620 55.000 0.00 0.00 0.00 4.30
4376 5520 0.733150 GCACAAGCCGAATAACCTCC 59.267 55.000 0.00 0.00 33.58 4.30
4377 5521 0.373716 CGCACAAGCCGAATAACCTC 59.626 55.000 0.00 0.00 37.52 3.85
4378 5522 0.036765 TCGCACAAGCCGAATAACCT 60.037 50.000 0.00 0.00 37.52 3.50
4379 5523 0.373716 CTCGCACAAGCCGAATAACC 59.626 55.000 0.00 0.00 37.52 2.85
4380 5524 1.060698 GACTCGCACAAGCCGAATAAC 59.939 52.381 0.00 0.00 37.52 1.89
4381 5525 1.067142 AGACTCGCACAAGCCGAATAA 60.067 47.619 0.00 0.00 37.52 1.40
4382 5526 0.530744 AGACTCGCACAAGCCGAATA 59.469 50.000 0.00 0.00 37.52 1.75
4383 5527 0.530744 TAGACTCGCACAAGCCGAAT 59.469 50.000 0.00 0.00 37.52 3.34
4384 5528 0.315886 TTAGACTCGCACAAGCCGAA 59.684 50.000 0.00 0.00 37.52 4.30
4385 5529 0.109272 CTTAGACTCGCACAAGCCGA 60.109 55.000 0.00 0.00 37.52 5.54
4386 5530 0.388649 ACTTAGACTCGCACAAGCCG 60.389 55.000 0.00 0.00 37.52 5.52
4387 5531 1.071605 CACTTAGACTCGCACAAGCC 58.928 55.000 0.00 0.00 37.52 4.35
4388 5532 0.440371 GCACTTAGACTCGCACAAGC 59.560 55.000 0.00 0.00 37.42 4.01
4389 5533 2.071688 AGCACTTAGACTCGCACAAG 57.928 50.000 0.00 0.00 0.00 3.16
4390 5534 2.404215 GAAGCACTTAGACTCGCACAA 58.596 47.619 0.00 0.00 0.00 3.33
4391 5535 1.666023 CGAAGCACTTAGACTCGCACA 60.666 52.381 0.00 0.00 0.00 4.57
4392 5536 0.985549 CGAAGCACTTAGACTCGCAC 59.014 55.000 0.00 0.00 0.00 5.34
4393 5537 0.596577 ACGAAGCACTTAGACTCGCA 59.403 50.000 0.00 0.00 0.00 5.10
4394 5538 1.649662 GAACGAAGCACTTAGACTCGC 59.350 52.381 0.00 0.00 0.00 5.03
4395 5539 2.929960 TGAACGAAGCACTTAGACTCG 58.070 47.619 0.00 0.00 0.00 4.18
4396 5540 4.049186 TGTTGAACGAAGCACTTAGACTC 58.951 43.478 0.00 0.00 0.00 3.36
4397 5541 4.054780 TGTTGAACGAAGCACTTAGACT 57.945 40.909 0.00 0.00 0.00 3.24
4398 5542 4.515432 GTTGTTGAACGAAGCACTTAGAC 58.485 43.478 0.00 0.00 0.00 2.59
4399 5543 4.789095 GTTGTTGAACGAAGCACTTAGA 57.211 40.909 0.00 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.