Multiple sequence alignment - TraesCS5D01G142800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G142800 chr5D 100.000 5076 0 0 1 5076 228772595 228777670 0.000000e+00 9374.0
1 TraesCS5D01G142800 chr5D 95.859 797 21 7 1 786 355640260 355641055 0.000000e+00 1279.0
2 TraesCS5D01G142800 chr5D 96.992 532 5 1 1 521 47011996 47012527 0.000000e+00 883.0
3 TraesCS5D01G142800 chr5D 90.062 483 37 1 50 521 295753927 295754409 2.600000e-172 616.0
4 TraesCS5D01G142800 chr5D 96.350 274 8 2 517 789 355640124 355639852 2.790000e-122 449.0
5 TraesCS5D01G142800 chr5D 100.000 104 0 0 2413 2516 228774904 228775007 5.190000e-45 193.0
6 TraesCS5D01G142800 chr5D 100.000 104 0 0 2310 2413 228775007 228775110 5.190000e-45 193.0
7 TraesCS5D01G142800 chr5A 93.787 2704 76 23 2413 5076 307347623 307350274 0.000000e+00 3978.0
8 TraesCS5D01G142800 chr5A 95.839 1466 48 6 957 2413 307346265 307347726 0.000000e+00 2357.0
9 TraesCS5D01G142800 chr5A 86.076 237 28 4 3550 3784 456055948 456056181 3.030000e-62 250.0
10 TraesCS5D01G142800 chr5B 92.492 1625 73 15 809 2413 254569518 254571113 0.000000e+00 2279.0
11 TraesCS5D01G142800 chr5B 96.154 806 23 6 4278 5076 254573173 254573977 0.000000e+00 1310.0
12 TraesCS5D01G142800 chr5B 89.143 1004 62 24 2557 3544 254571350 254572322 0.000000e+00 1206.0
13 TraesCS5D01G142800 chr5B 91.331 646 38 8 3591 4218 254572528 254573173 0.000000e+00 867.0
14 TraesCS5D01G142800 chr5B 89.766 342 23 9 2413 2742 254571010 254571351 1.310000e-115 427.0
15 TraesCS5D01G142800 chr5B 86.348 293 27 4 3262 3554 608323664 608323943 1.780000e-79 307.0
16 TraesCS5D01G142800 chr5B 86.076 237 29 3 3550 3784 608332740 608332974 8.440000e-63 252.0
17 TraesCS5D01G142800 chr3D 96.625 800 16 1 1 789 155951889 155951090 0.000000e+00 1317.0
18 TraesCS5D01G142800 chr3D 96.010 802 21 1 1 791 303869099 303868298 0.000000e+00 1293.0
19 TraesCS5D01G142800 chr3D 95.739 798 22 4 1 786 303408091 303408888 0.000000e+00 1275.0
20 TraesCS5D01G142800 chr3D 92.593 54 4 0 3134 3187 293809928 293809981 1.520000e-10 78.7
21 TraesCS5D01G142800 chr1D 96.241 532 9 1 1 521 489707816 489708347 0.000000e+00 861.0
22 TraesCS5D01G142800 chr4B 89.978 459 36 9 57 505 122965519 122965061 7.320000e-163 584.0
23 TraesCS5D01G142800 chr4B 89.270 466 36 4 53 505 385825132 385824668 5.700000e-159 571.0
24 TraesCS5D01G142800 chr4B 88.254 315 26 8 1379 1683 172523759 172523446 2.890000e-97 366.0
25 TraesCS5D01G142800 chr4B 80.637 377 46 20 3126 3491 172521999 172521639 3.010000e-67 267.0
26 TraesCS5D01G142800 chr3B 88.421 475 44 6 50 513 281314142 281314616 3.430000e-156 562.0
27 TraesCS5D01G142800 chr3B 78.325 609 69 26 2953 3554 28063503 28062951 8.140000e-88 335.0
28 TraesCS5D01G142800 chr3B 87.372 293 24 3 3262 3554 345089219 345089498 1.760000e-84 324.0
29 TraesCS5D01G142800 chr3B 80.882 204 22 7 3700 3893 455069292 455069488 1.470000e-30 145.0
30 TraesCS5D01G142800 chr3B 74.272 206 32 13 3134 3323 387432447 387432647 3.280000e-07 67.6
31 TraesCS5D01G142800 chr4A 90.307 423 30 9 1 412 196334447 196334869 1.240000e-150 544.0
32 TraesCS5D01G142800 chr4A 87.147 319 28 9 1374 1680 465327306 465327623 2.910000e-92 350.0
33 TraesCS5D01G142800 chr4A 82.031 384 38 20 3120 3490 465329328 465329693 1.070000e-76 298.0
34 TraesCS5D01G142800 chr4A 86.134 238 27 5 3553 3787 374493730 374493496 8.440000e-63 252.0
35 TraesCS5D01G142800 chr4A 85.232 237 31 3 3553 3787 27185406 27185172 1.830000e-59 241.0
36 TraesCS5D01G142800 chr2D 89.294 411 35 9 380 786 636344755 636345160 1.630000e-139 507.0
37 TraesCS5D01G142800 chr4D 96.000 300 12 0 491 790 397674135 397674434 5.910000e-134 488.0
38 TraesCS5D01G142800 chr4D 95.667 300 13 0 491 790 397673640 397673341 2.750000e-132 483.0
39 TraesCS5D01G142800 chr4D 94.352 301 12 4 491 790 35613271 35612975 1.670000e-124 457.0
40 TraesCS5D01G142800 chr4D 87.435 382 39 6 3178 3559 278186779 278186407 1.010000e-116 431.0
41 TraesCS5D01G142800 chr4D 86.709 316 29 10 1379 1683 111949795 111949482 6.300000e-89 339.0
42 TraesCS5D01G142800 chr4D 82.058 379 37 21 3125 3490 111948006 111947646 1.380000e-75 294.0
43 TraesCS5D01G142800 chr2B 79.542 611 70 26 2953 3554 72605518 72604954 7.970000e-103 385.0
44 TraesCS5D01G142800 chr2B 86.348 293 27 3 3262 3554 70869346 70869625 1.780000e-79 307.0
45 TraesCS5D01G142800 chr2B 84.810 237 32 4 3550 3784 70869822 70870056 8.500000e-58 235.0
46 TraesCS5D01G142800 chr1B 87.202 336 33 7 3179 3512 113520018 113520345 1.730000e-99 374.0
47 TraesCS5D01G142800 chr1B 86.555 238 26 5 3553 3787 629690770 629690536 1.810000e-64 257.0
48 TraesCS5D01G142800 chr1B 86.383 235 30 2 3550 3784 74127239 74127471 6.520000e-64 255.0
49 TraesCS5D01G142800 chr2A 86.076 237 29 3 3550 3784 713201582 713201816 8.440000e-63 252.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G142800 chr5D 228772595 228777670 5075 False 3253.333333 9374 100.0000 1 5076 3 chr5D.!!$F4 5075
1 TraesCS5D01G142800 chr5D 355640260 355641055 795 False 1279.000000 1279 95.8590 1 786 1 chr5D.!!$F3 785
2 TraesCS5D01G142800 chr5D 47011996 47012527 531 False 883.000000 883 96.9920 1 521 1 chr5D.!!$F1 520
3 TraesCS5D01G142800 chr5A 307346265 307350274 4009 False 3167.500000 3978 94.8130 957 5076 2 chr5A.!!$F2 4119
4 TraesCS5D01G142800 chr5B 254569518 254573977 4459 False 1217.800000 2279 91.7772 809 5076 5 chr5B.!!$F3 4267
5 TraesCS5D01G142800 chr3D 155951090 155951889 799 True 1317.000000 1317 96.6250 1 789 1 chr3D.!!$R1 788
6 TraesCS5D01G142800 chr3D 303868298 303869099 801 True 1293.000000 1293 96.0100 1 791 1 chr3D.!!$R2 790
7 TraesCS5D01G142800 chr3D 303408091 303408888 797 False 1275.000000 1275 95.7390 1 786 1 chr3D.!!$F2 785
8 TraesCS5D01G142800 chr1D 489707816 489708347 531 False 861.000000 861 96.2410 1 521 1 chr1D.!!$F1 520
9 TraesCS5D01G142800 chr4B 172521639 172523759 2120 True 316.500000 366 84.4455 1379 3491 2 chr4B.!!$R3 2112
10 TraesCS5D01G142800 chr3B 28062951 28063503 552 True 335.000000 335 78.3250 2953 3554 1 chr3B.!!$R1 601
11 TraesCS5D01G142800 chr4A 465327306 465329693 2387 False 324.000000 350 84.5890 1374 3490 2 chr4A.!!$F2 2116
12 TraesCS5D01G142800 chr4D 111947646 111949795 2149 True 316.500000 339 84.3835 1379 3490 2 chr4D.!!$R4 2111
13 TraesCS5D01G142800 chr2B 72604954 72605518 564 True 385.000000 385 79.5420 2953 3554 1 chr2B.!!$R1 601
14 TraesCS5D01G142800 chr2B 70869346 70870056 710 False 271.000000 307 85.5790 3262 3784 2 chr2B.!!$F1 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
945 968 0.038890 AGAGAGCCTCCCCAAAAAGC 59.961 55.000 0.00 0.00 0.00 3.51 F
1617 1655 0.321653 CCGGCTACAACCAGAGCTTT 60.322 55.000 0.00 0.00 38.79 3.51 F
1934 2185 5.841810 TCACAAGGAAAACCACAATCATTC 58.158 37.500 0.00 0.00 0.00 2.67 F
2441 2857 2.093658 CCGTGGCTATGGTGTTTAGACT 60.094 50.000 0.00 0.00 0.00 3.24 F
2453 2869 2.813754 TGTTTAGACTTCACCAGCATGC 59.186 45.455 10.51 10.51 31.97 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1873 2124 0.914644 TCCCAGAAGGAGCCTCATTG 59.085 55.000 0.00 0.0 40.93 2.82 R
2420 2836 2.093658 AGTCTAAACACCATAGCCACGG 60.094 50.000 0.00 0.0 0.00 4.94 R
3693 5228 2.092429 TGAAGCTTCAGAACAGTTGGGT 60.092 45.455 25.16 0.0 32.50 4.51 R
4035 5604 0.038599 AACTGTGGAGCCATCATGCA 59.961 50.000 0.00 0.0 0.00 3.96 R
4205 5774 0.464916 GTTCCAAACCGTCCACAGGT 60.465 55.000 0.00 0.0 45.29 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
759 772 2.519771 TCAATCTGCTTCCAATGCCT 57.480 45.000 0.00 0.00 0.00 4.75
760 773 2.811410 TCAATCTGCTTCCAATGCCTT 58.189 42.857 0.00 0.00 0.00 4.35
768 781 3.831333 TGCTTCCAATGCCTTAATTGTGA 59.169 39.130 0.00 0.00 36.06 3.58
774 787 7.099266 TCCAATGCCTTAATTGTGATACTTG 57.901 36.000 0.00 0.00 36.06 3.16
791 804 7.323656 GTGATACTTGTATGCAATTTATTCCGC 59.676 37.037 0.00 0.00 33.65 5.54
792 805 4.932146 ACTTGTATGCAATTTATTCCGCC 58.068 39.130 0.00 0.00 33.65 6.13
793 806 3.617540 TGTATGCAATTTATTCCGCCG 57.382 42.857 0.00 0.00 0.00 6.46
794 807 3.206964 TGTATGCAATTTATTCCGCCGA 58.793 40.909 0.00 0.00 0.00 5.54
795 808 3.249799 TGTATGCAATTTATTCCGCCGAG 59.750 43.478 0.00 0.00 0.00 4.63
796 809 1.021202 TGCAATTTATTCCGCCGAGG 58.979 50.000 0.00 0.00 42.97 4.63
797 810 0.310854 GCAATTTATTCCGCCGAGGG 59.689 55.000 0.00 0.00 41.52 4.30
798 811 1.961793 CAATTTATTCCGCCGAGGGA 58.038 50.000 0.00 0.00 41.52 4.20
799 812 1.873591 CAATTTATTCCGCCGAGGGAG 59.126 52.381 0.00 0.00 41.52 4.30
800 813 1.420430 ATTTATTCCGCCGAGGGAGA 58.580 50.000 0.00 0.00 41.52 3.71
801 814 1.420430 TTTATTCCGCCGAGGGAGAT 58.580 50.000 0.00 0.00 41.52 2.75
802 815 2.297698 TTATTCCGCCGAGGGAGATA 57.702 50.000 0.00 0.00 41.52 1.98
803 816 2.526888 TATTCCGCCGAGGGAGATAT 57.473 50.000 0.00 0.00 41.52 1.63
804 817 2.526888 ATTCCGCCGAGGGAGATATA 57.473 50.000 0.00 0.00 41.52 0.86
805 818 1.542492 TTCCGCCGAGGGAGATATAC 58.458 55.000 0.00 0.00 41.52 1.47
806 819 0.697079 TCCGCCGAGGGAGATATACT 59.303 55.000 0.00 0.00 41.52 2.12
807 820 1.096416 CCGCCGAGGGAGATATACTC 58.904 60.000 0.00 0.00 44.24 2.59
908 931 3.915575 CTGGTGCCAGCCTTCATC 58.084 61.111 5.19 0.00 37.24 2.92
933 956 2.155924 CGTTCGAAAAGTTGAGAGAGCC 59.844 50.000 0.00 0.00 0.00 4.70
939 962 0.178891 AAGTTGAGAGAGCCTCCCCA 60.179 55.000 0.00 0.00 41.25 4.96
945 968 0.038890 AGAGAGCCTCCCCAAAAAGC 59.961 55.000 0.00 0.00 0.00 3.51
1170 1199 1.537669 CTCCTCCCCCTACTACGCT 59.462 63.158 0.00 0.00 0.00 5.07
1617 1655 0.321653 CCGGCTACAACCAGAGCTTT 60.322 55.000 0.00 0.00 38.79 3.51
1934 2185 5.841810 TCACAAGGAAAACCACAATCATTC 58.158 37.500 0.00 0.00 0.00 2.67
2086 2502 7.765695 ATTTAATGGTGATATAAGGGCACAG 57.234 36.000 0.00 0.00 34.33 3.66
2161 2577 8.229253 TGTATGCAAGATAGAATGAGCATTTT 57.771 30.769 0.00 0.00 42.16 1.82
2263 2679 6.777213 TTGGCCTTTACTCAAACACTTAAA 57.223 33.333 3.32 0.00 0.00 1.52
2409 2825 9.539194 ACCAGATGATACTTATATCTGATGACA 57.461 33.333 13.39 0.00 46.71 3.58
2410 2826 9.800433 CCAGATGATACTTATATCTGATGACAC 57.200 37.037 13.39 0.00 46.71 3.67
2424 2840 7.770801 TCTGATGACACTTATTTTATCCGTG 57.229 36.000 0.00 0.00 0.00 4.94
2425 2841 6.761242 TCTGATGACACTTATTTTATCCGTGG 59.239 38.462 0.00 0.00 0.00 4.94
2426 2842 5.295787 TGATGACACTTATTTTATCCGTGGC 59.704 40.000 0.00 0.00 34.28 5.01
2427 2843 4.839121 TGACACTTATTTTATCCGTGGCT 58.161 39.130 0.00 0.00 34.76 4.75
2428 2844 5.979993 TGACACTTATTTTATCCGTGGCTA 58.020 37.500 0.00 0.00 34.76 3.93
2429 2845 6.588204 TGACACTTATTTTATCCGTGGCTAT 58.412 36.000 0.00 0.00 34.76 2.97
2430 2846 6.481976 TGACACTTATTTTATCCGTGGCTATG 59.518 38.462 0.00 0.00 34.76 2.23
2431 2847 5.763204 ACACTTATTTTATCCGTGGCTATGG 59.237 40.000 0.92 0.92 0.00 2.74
2432 2848 5.763204 CACTTATTTTATCCGTGGCTATGGT 59.237 40.000 8.34 0.00 34.41 3.55
2433 2849 5.763204 ACTTATTTTATCCGTGGCTATGGTG 59.237 40.000 8.34 0.00 34.41 4.17
2434 2850 3.637911 TTTTATCCGTGGCTATGGTGT 57.362 42.857 8.34 1.51 34.41 4.16
2435 2851 3.637911 TTTATCCGTGGCTATGGTGTT 57.362 42.857 8.34 0.00 34.41 3.32
2436 2852 3.637911 TTATCCGTGGCTATGGTGTTT 57.362 42.857 8.34 0.00 34.41 2.83
2437 2853 4.757019 TTATCCGTGGCTATGGTGTTTA 57.243 40.909 8.34 0.00 34.41 2.01
2438 2854 2.684001 TCCGTGGCTATGGTGTTTAG 57.316 50.000 8.34 0.00 34.41 1.85
2439 2855 2.181125 TCCGTGGCTATGGTGTTTAGA 58.819 47.619 8.34 0.00 34.41 2.10
2440 2856 2.093869 TCCGTGGCTATGGTGTTTAGAC 60.094 50.000 8.34 0.00 34.41 2.59
2441 2857 2.093658 CCGTGGCTATGGTGTTTAGACT 60.094 50.000 0.00 0.00 0.00 3.24
2442 2858 3.596214 CGTGGCTATGGTGTTTAGACTT 58.404 45.455 0.00 0.00 0.00 3.01
2443 2859 3.617263 CGTGGCTATGGTGTTTAGACTTC 59.383 47.826 0.00 0.00 0.00 3.01
2444 2860 4.575885 GTGGCTATGGTGTTTAGACTTCA 58.424 43.478 0.00 0.00 0.00 3.02
2445 2861 4.392138 GTGGCTATGGTGTTTAGACTTCAC 59.608 45.833 0.00 0.00 0.00 3.18
2452 2868 4.410492 GTGTTTAGACTTCACCAGCATG 57.590 45.455 0.00 0.00 0.00 4.06
2453 2869 2.813754 TGTTTAGACTTCACCAGCATGC 59.186 45.455 10.51 10.51 31.97 4.06
2454 2870 2.813754 GTTTAGACTTCACCAGCATGCA 59.186 45.455 21.98 0.00 31.97 3.96
2455 2871 3.354948 TTAGACTTCACCAGCATGCAT 57.645 42.857 21.98 1.25 31.97 3.96
2456 2872 4.486125 TTAGACTTCACCAGCATGCATA 57.514 40.909 21.98 0.00 31.97 3.14
2457 2873 3.572632 AGACTTCACCAGCATGCATAT 57.427 42.857 21.98 0.40 31.97 1.78
2458 2874 3.211865 AGACTTCACCAGCATGCATATG 58.788 45.455 21.98 14.16 37.36 1.78
2459 2875 3.118149 AGACTTCACCAGCATGCATATGA 60.118 43.478 21.98 16.30 36.36 2.15
2460 2876 3.623703 ACTTCACCAGCATGCATATGAA 58.376 40.909 21.98 21.86 36.36 2.57
2461 2877 3.630769 ACTTCACCAGCATGCATATGAAG 59.369 43.478 33.62 33.62 41.69 3.02
2462 2878 3.564053 TCACCAGCATGCATATGAAGA 57.436 42.857 21.98 7.90 36.36 2.87
2463 2879 3.888583 TCACCAGCATGCATATGAAGAA 58.111 40.909 21.98 0.00 36.36 2.52
2464 2880 4.466827 TCACCAGCATGCATATGAAGAAT 58.533 39.130 21.98 0.00 36.36 2.40
2465 2881 5.623169 TCACCAGCATGCATATGAAGAATA 58.377 37.500 21.98 0.00 36.36 1.75
2466 2882 6.063404 TCACCAGCATGCATATGAAGAATAA 58.937 36.000 21.98 0.00 36.36 1.40
2467 2883 6.546772 TCACCAGCATGCATATGAAGAATAAA 59.453 34.615 21.98 0.00 36.36 1.40
2468 2884 7.068470 TCACCAGCATGCATATGAAGAATAAAA 59.932 33.333 21.98 0.00 36.36 1.52
2469 2885 7.870954 CACCAGCATGCATATGAAGAATAAAAT 59.129 33.333 21.98 0.00 36.36 1.82
2470 2886 9.081204 ACCAGCATGCATATGAAGAATAAAATA 57.919 29.630 21.98 0.00 36.36 1.40
2471 2887 9.350357 CCAGCATGCATATGAAGAATAAAATAC 57.650 33.333 21.98 0.00 36.36 1.89
3641 5176 6.466885 ACTCGCTGGTACTTCTATTATGTT 57.533 37.500 0.00 0.00 0.00 2.71
3693 5228 8.735315 TCTTCCGTTTTATGAATTAAAGATGCA 58.265 29.630 0.00 0.00 31.57 3.96
3819 5367 8.842358 TGGTTTATAACAGTCCTAACTCTTTG 57.158 34.615 0.00 0.00 31.71 2.77
3827 5375 6.852664 ACAGTCCTAACTCTTTGTTTGTTTG 58.147 36.000 0.00 0.00 39.89 2.93
3828 5376 6.433093 ACAGTCCTAACTCTTTGTTTGTTTGT 59.567 34.615 0.00 0.00 39.89 2.83
3829 5377 6.747280 CAGTCCTAACTCTTTGTTTGTTTGTG 59.253 38.462 0.00 0.00 39.89 3.33
3884 5452 9.920946 ATTTCCCATCATTATACTACACAAACT 57.079 29.630 0.00 0.00 0.00 2.66
4035 5604 3.245016 TGACTGTGCTCCCTTTCATCATT 60.245 43.478 0.00 0.00 0.00 2.57
4089 5658 1.670811 AGCTTTGAGTGTGTTGTTCCG 59.329 47.619 0.00 0.00 0.00 4.30
4137 5706 5.358725 ACGGAGGTGTAGTTTGTTTGAATTT 59.641 36.000 0.00 0.00 0.00 1.82
4205 5774 4.163458 GGAAACTGGTGTATGATGGTAGGA 59.837 45.833 0.00 0.00 0.00 2.94
4218 5834 1.190178 GGTAGGACCTGTGGACGGTT 61.190 60.000 3.53 0.00 34.73 4.44
4219 5835 0.683412 GTAGGACCTGTGGACGGTTT 59.317 55.000 3.53 0.00 34.19 3.27
4220 5836 0.682852 TAGGACCTGTGGACGGTTTG 59.317 55.000 3.53 0.00 34.19 2.93
4221 5837 1.599797 GGACCTGTGGACGGTTTGG 60.600 63.158 0.00 0.00 34.19 3.28
4222 5838 1.448497 GACCTGTGGACGGTTTGGA 59.552 57.895 0.00 0.00 34.19 3.53
4223 5839 0.179040 GACCTGTGGACGGTTTGGAA 60.179 55.000 0.00 0.00 34.19 3.53
4224 5840 0.464916 ACCTGTGGACGGTTTGGAAC 60.465 55.000 0.00 0.00 0.00 3.62
4225 5841 0.179029 CCTGTGGACGGTTTGGAACT 60.179 55.000 0.00 0.00 0.00 3.01
4226 5842 1.226746 CTGTGGACGGTTTGGAACTC 58.773 55.000 0.00 0.00 0.00 3.01
4227 5843 0.834612 TGTGGACGGTTTGGAACTCT 59.165 50.000 0.00 0.00 0.00 3.24
4228 5844 1.226746 GTGGACGGTTTGGAACTCTG 58.773 55.000 0.00 0.00 0.00 3.35
4229 5845 1.124780 TGGACGGTTTGGAACTCTGA 58.875 50.000 0.00 0.00 0.00 3.27
4230 5846 1.487142 TGGACGGTTTGGAACTCTGAA 59.513 47.619 0.00 0.00 0.00 3.02
4231 5847 2.092861 TGGACGGTTTGGAACTCTGAAA 60.093 45.455 0.00 0.00 0.00 2.69
4232 5848 2.946990 GGACGGTTTGGAACTCTGAAAA 59.053 45.455 0.00 0.00 0.00 2.29
4233 5849 3.568430 GGACGGTTTGGAACTCTGAAAAT 59.432 43.478 0.00 0.00 0.00 1.82
4234 5850 4.537015 GACGGTTTGGAACTCTGAAAATG 58.463 43.478 0.00 0.00 0.00 2.32
4235 5851 3.243401 ACGGTTTGGAACTCTGAAAATGC 60.243 43.478 0.00 0.00 0.00 3.56
4236 5852 3.004734 CGGTTTGGAACTCTGAAAATGCT 59.995 43.478 0.00 0.00 0.00 3.79
4237 5853 4.301628 GGTTTGGAACTCTGAAAATGCTG 58.698 43.478 0.00 0.00 0.00 4.41
4238 5854 4.202151 GGTTTGGAACTCTGAAAATGCTGT 60.202 41.667 0.00 0.00 0.00 4.40
4239 5855 4.836125 TTGGAACTCTGAAAATGCTGTC 57.164 40.909 0.00 0.00 0.00 3.51
4240 5856 2.807967 TGGAACTCTGAAAATGCTGTCG 59.192 45.455 0.00 0.00 0.00 4.35
4241 5857 2.413371 GGAACTCTGAAAATGCTGTCGC 60.413 50.000 0.00 0.00 0.00 5.19
4251 5867 3.457099 TGCTGTCGCATATGCTTGA 57.543 47.368 24.56 13.12 42.25 3.02
4252 5868 1.957668 TGCTGTCGCATATGCTTGAT 58.042 45.000 24.56 0.00 42.25 2.57
4253 5869 1.869132 TGCTGTCGCATATGCTTGATC 59.131 47.619 24.56 11.63 42.25 2.92
4254 5870 2.141517 GCTGTCGCATATGCTTGATCT 58.858 47.619 24.56 0.00 39.32 2.75
4255 5871 2.157279 GCTGTCGCATATGCTTGATCTC 59.843 50.000 24.56 5.62 39.32 2.75
4256 5872 2.735663 CTGTCGCATATGCTTGATCTCC 59.264 50.000 24.56 5.30 39.32 3.71
4257 5873 2.366590 TGTCGCATATGCTTGATCTCCT 59.633 45.455 24.56 0.00 39.32 3.69
4258 5874 3.181462 TGTCGCATATGCTTGATCTCCTT 60.181 43.478 24.56 0.00 39.32 3.36
4259 5875 3.431572 GTCGCATATGCTTGATCTCCTTC 59.568 47.826 24.56 0.00 39.32 3.46
4260 5876 2.411069 CGCATATGCTTGATCTCCTTCG 59.589 50.000 24.56 1.26 39.32 3.79
4261 5877 2.159234 GCATATGCTTGATCTCCTTCGC 59.841 50.000 20.64 0.00 38.21 4.70
4262 5878 3.661944 CATATGCTTGATCTCCTTCGCT 58.338 45.455 0.00 0.00 0.00 4.93
4263 5879 1.950828 ATGCTTGATCTCCTTCGCTG 58.049 50.000 0.00 0.00 0.00 5.18
4264 5880 0.897621 TGCTTGATCTCCTTCGCTGA 59.102 50.000 0.00 0.00 0.00 4.26
4265 5881 1.276138 TGCTTGATCTCCTTCGCTGAA 59.724 47.619 0.00 0.00 0.00 3.02
4266 5882 2.289631 TGCTTGATCTCCTTCGCTGAAA 60.290 45.455 0.00 0.00 0.00 2.69
4267 5883 2.351111 GCTTGATCTCCTTCGCTGAAAG 59.649 50.000 0.00 0.00 0.00 2.62
4268 5884 3.594134 CTTGATCTCCTTCGCTGAAAGT 58.406 45.455 0.00 0.00 35.30 2.66
4269 5885 3.685139 TGATCTCCTTCGCTGAAAGTT 57.315 42.857 0.00 0.00 35.30 2.66
4270 5886 3.329386 TGATCTCCTTCGCTGAAAGTTG 58.671 45.455 0.00 0.00 35.30 3.16
4271 5887 2.910688 TCTCCTTCGCTGAAAGTTGT 57.089 45.000 0.00 0.00 35.30 3.32
4272 5888 2.755650 TCTCCTTCGCTGAAAGTTGTC 58.244 47.619 0.00 0.00 35.30 3.18
4273 5889 1.457303 CTCCTTCGCTGAAAGTTGTCG 59.543 52.381 0.00 0.00 35.30 4.35
4274 5890 1.202486 TCCTTCGCTGAAAGTTGTCGT 60.202 47.619 0.00 0.00 35.30 4.34
4275 5891 1.597663 CCTTCGCTGAAAGTTGTCGTT 59.402 47.619 0.00 0.00 35.30 3.85
4276 5892 2.031683 CCTTCGCTGAAAGTTGTCGTTT 59.968 45.455 0.00 0.00 35.30 3.60
4277 5893 3.486875 CCTTCGCTGAAAGTTGTCGTTTT 60.487 43.478 0.00 0.00 35.30 2.43
4542 6162 2.037136 AATCCTGCAGCGCACACTC 61.037 57.895 11.47 0.00 33.79 3.51
4713 6333 7.020827 TCCAGAGATTTCACCTGATTTAACT 57.979 36.000 0.00 0.00 0.00 2.24
4839 6459 4.116747 GAGAAACTCGATGATCACCACT 57.883 45.455 0.00 0.00 0.00 4.00
4851 6471 3.587061 TGATCACCACTTGGAATACCACT 59.413 43.478 1.14 0.00 46.80 4.00
4975 6595 3.991605 ACATCGTCGAAAGTACATTGC 57.008 42.857 0.00 0.00 0.00 3.56
4988 6608 0.732571 ACATTGCCATTAGTTCGCCG 59.267 50.000 0.00 0.00 0.00 6.46
5016 6636 6.693466 TGGAACAACGATGTAAATGACTAGA 58.307 36.000 0.00 0.00 39.40 2.43
5018 6638 7.822334 TGGAACAACGATGTAAATGACTAGAAT 59.178 33.333 0.00 0.00 39.40 2.40
5019 6639 8.328864 GGAACAACGATGTAAATGACTAGAATC 58.671 37.037 0.00 0.00 39.40 2.52
5020 6640 9.088512 GAACAACGATGTAAATGACTAGAATCT 57.911 33.333 0.00 0.00 39.40 2.40
5022 6642 8.035394 ACAACGATGTAAATGACTAGAATCTGT 58.965 33.333 0.00 0.00 38.24 3.41
5023 6643 8.535592 CAACGATGTAAATGACTAGAATCTGTC 58.464 37.037 0.00 0.00 0.00 3.51
5024 6644 8.001881 ACGATGTAAATGACTAGAATCTGTCT 57.998 34.615 0.00 0.00 40.71 3.41
5025 6645 8.132362 ACGATGTAAATGACTAGAATCTGTCTC 58.868 37.037 0.00 0.00 37.84 3.36
5026 6646 8.131731 CGATGTAAATGACTAGAATCTGTCTCA 58.868 37.037 0.00 2.82 37.84 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
377 389 2.247437 CGGCGCATCTAAAGGAGGC 61.247 63.158 10.83 0.00 46.78 4.70
740 753 2.519771 AGGCATTGGAAGCAGATTGA 57.480 45.000 0.00 0.00 0.00 2.57
768 781 6.567701 CGGCGGAATAAATTGCATACAAGTAT 60.568 38.462 0.00 0.00 39.69 2.12
774 787 3.364964 CCTCGGCGGAATAAATTGCATAC 60.365 47.826 7.21 0.00 33.16 2.39
786 799 1.075050 AGTATATCTCCCTCGGCGGAA 59.925 52.381 7.21 0.00 33.16 4.30
792 805 3.613494 TCTCCGAGTATATCTCCCTCG 57.387 52.381 0.00 0.00 45.71 4.63
793 806 5.472137 GCATATCTCCGAGTATATCTCCCTC 59.528 48.000 0.00 0.00 39.84 4.30
794 807 5.103898 TGCATATCTCCGAGTATATCTCCCT 60.104 44.000 0.00 0.00 39.84 4.20
795 808 5.133941 TGCATATCTCCGAGTATATCTCCC 58.866 45.833 0.00 0.00 39.84 4.30
796 809 6.892658 ATGCATATCTCCGAGTATATCTCC 57.107 41.667 0.00 0.00 39.84 3.71
797 810 7.367285 GGAATGCATATCTCCGAGTATATCTC 58.633 42.308 0.00 0.00 39.62 2.75
798 811 6.266558 GGGAATGCATATCTCCGAGTATATCT 59.733 42.308 0.00 0.00 0.00 1.98
799 812 6.266558 AGGGAATGCATATCTCCGAGTATATC 59.733 42.308 0.00 0.00 0.00 1.63
800 813 6.041409 CAGGGAATGCATATCTCCGAGTATAT 59.959 42.308 0.00 0.00 0.00 0.86
801 814 5.360999 CAGGGAATGCATATCTCCGAGTATA 59.639 44.000 0.00 0.00 0.00 1.47
802 815 4.161189 CAGGGAATGCATATCTCCGAGTAT 59.839 45.833 0.00 0.00 0.00 2.12
803 816 3.511540 CAGGGAATGCATATCTCCGAGTA 59.488 47.826 0.00 0.00 0.00 2.59
804 817 2.301296 CAGGGAATGCATATCTCCGAGT 59.699 50.000 0.00 0.00 0.00 4.18
805 818 2.969990 CAGGGAATGCATATCTCCGAG 58.030 52.381 0.00 0.00 0.00 4.63
908 931 2.206750 TCTCAACTTTTCGAACGGTGG 58.793 47.619 10.72 5.14 0.00 4.61
933 956 1.820010 GCCTGGTGCTTTTTGGGGAG 61.820 60.000 0.00 0.00 36.87 4.30
939 962 1.455383 CGTCTGGCCTGGTGCTTTTT 61.455 55.000 10.07 0.00 40.92 1.94
945 968 4.394712 GGGTCGTCTGGCCTGGTG 62.395 72.222 10.07 2.85 0.00 4.17
1134 1163 2.440599 GCCTTGCCTTCCTTGGGA 59.559 61.111 0.00 0.00 0.00 4.37
1231 1260 2.285442 GTAGGACTGGGGCTGGGT 60.285 66.667 0.00 0.00 0.00 4.51
1818 1872 2.941415 GCCCACAGACTGAAATACCAGG 60.941 54.545 10.08 0.00 38.44 4.45
1873 2124 0.914644 TCCCAGAAGGAGCCTCATTG 59.085 55.000 0.00 0.00 40.93 2.82
2086 2502 2.743636 TGTTGCCTAGAGTGTAGTGC 57.256 50.000 0.00 0.00 0.00 4.40
2177 2593 6.838198 TCGGCTATCACACAAAATACATAC 57.162 37.500 0.00 0.00 0.00 2.39
2402 2818 5.295787 GCCACGGATAAAATAAGTGTCATCA 59.704 40.000 0.00 0.00 0.00 3.07
2403 2819 5.527582 AGCCACGGATAAAATAAGTGTCATC 59.472 40.000 0.00 0.00 0.00 2.92
2404 2820 5.437060 AGCCACGGATAAAATAAGTGTCAT 58.563 37.500 0.00 0.00 0.00 3.06
2405 2821 4.839121 AGCCACGGATAAAATAAGTGTCA 58.161 39.130 0.00 0.00 0.00 3.58
2406 2822 6.073222 CCATAGCCACGGATAAAATAAGTGTC 60.073 42.308 0.00 0.00 0.00 3.67
2407 2823 5.763204 CCATAGCCACGGATAAAATAAGTGT 59.237 40.000 0.00 0.00 0.00 3.55
2408 2824 5.763204 ACCATAGCCACGGATAAAATAAGTG 59.237 40.000 0.00 0.00 0.00 3.16
2409 2825 5.763204 CACCATAGCCACGGATAAAATAAGT 59.237 40.000 0.00 0.00 0.00 2.24
2410 2826 5.763204 ACACCATAGCCACGGATAAAATAAG 59.237 40.000 0.00 0.00 0.00 1.73
2411 2827 5.686753 ACACCATAGCCACGGATAAAATAA 58.313 37.500 0.00 0.00 0.00 1.40
2412 2828 5.298989 ACACCATAGCCACGGATAAAATA 57.701 39.130 0.00 0.00 0.00 1.40
2413 2829 4.164843 ACACCATAGCCACGGATAAAAT 57.835 40.909 0.00 0.00 0.00 1.82
2414 2830 3.637911 ACACCATAGCCACGGATAAAA 57.362 42.857 0.00 0.00 0.00 1.52
2415 2831 3.637911 AACACCATAGCCACGGATAAA 57.362 42.857 0.00 0.00 0.00 1.40
2416 2832 3.637911 AAACACCATAGCCACGGATAA 57.362 42.857 0.00 0.00 0.00 1.75
2417 2833 3.962063 TCTAAACACCATAGCCACGGATA 59.038 43.478 0.00 0.00 0.00 2.59
2418 2834 2.769663 TCTAAACACCATAGCCACGGAT 59.230 45.455 0.00 0.00 0.00 4.18
2419 2835 2.093869 GTCTAAACACCATAGCCACGGA 60.094 50.000 0.00 0.00 0.00 4.69
2420 2836 2.093658 AGTCTAAACACCATAGCCACGG 60.094 50.000 0.00 0.00 0.00 4.94
2421 2837 3.247006 AGTCTAAACACCATAGCCACG 57.753 47.619 0.00 0.00 0.00 4.94
2422 2838 4.392138 GTGAAGTCTAAACACCATAGCCAC 59.608 45.833 0.00 0.00 0.00 5.01
2423 2839 4.575885 GTGAAGTCTAAACACCATAGCCA 58.424 43.478 0.00 0.00 0.00 4.75
2431 2847 3.365364 GCATGCTGGTGAAGTCTAAACAC 60.365 47.826 11.37 0.00 0.00 3.32
2432 2848 2.813754 GCATGCTGGTGAAGTCTAAACA 59.186 45.455 11.37 0.00 0.00 2.83
2433 2849 2.813754 TGCATGCTGGTGAAGTCTAAAC 59.186 45.455 20.33 0.00 0.00 2.01
2434 2850 3.138884 TGCATGCTGGTGAAGTCTAAA 57.861 42.857 20.33 0.00 0.00 1.85
2435 2851 2.857186 TGCATGCTGGTGAAGTCTAA 57.143 45.000 20.33 0.00 0.00 2.10
2436 2852 4.101430 TCATATGCATGCTGGTGAAGTCTA 59.899 41.667 20.33 0.00 31.73 2.59
2437 2853 3.118149 TCATATGCATGCTGGTGAAGTCT 60.118 43.478 20.33 0.00 31.73 3.24
2438 2854 3.208594 TCATATGCATGCTGGTGAAGTC 58.791 45.455 20.33 0.00 31.73 3.01
2439 2855 3.286329 TCATATGCATGCTGGTGAAGT 57.714 42.857 20.33 0.00 31.73 3.01
2440 2856 3.881089 TCTTCATATGCATGCTGGTGAAG 59.119 43.478 31.29 31.29 42.22 3.02
2441 2857 3.888583 TCTTCATATGCATGCTGGTGAA 58.111 40.909 20.33 21.34 31.73 3.18
2442 2858 3.564053 TCTTCATATGCATGCTGGTGA 57.436 42.857 20.33 16.00 31.73 4.02
2443 2859 4.848562 ATTCTTCATATGCATGCTGGTG 57.151 40.909 20.33 13.97 31.73 4.17
2444 2860 6.964807 TTTATTCTTCATATGCATGCTGGT 57.035 33.333 20.33 7.62 31.73 4.00
2445 2861 9.350357 GTATTTTATTCTTCATATGCATGCTGG 57.650 33.333 20.33 5.71 31.73 4.85
2486 2902 9.539194 TGTCATCAGATATAAGTATCATCTGGT 57.461 33.333 10.09 1.48 43.78 4.00
2487 2903 9.800433 GTGTCATCAGATATAAGTATCATCTGG 57.200 37.037 10.09 0.00 43.78 3.86
2502 2918 9.761504 CTCATACTATTTCAAGTGTCATCAGAT 57.238 33.333 0.00 0.00 0.00 2.90
2503 2919 7.708322 GCTCATACTATTTCAAGTGTCATCAGA 59.292 37.037 0.00 0.00 0.00 3.27
2504 2920 7.710044 AGCTCATACTATTTCAAGTGTCATCAG 59.290 37.037 0.00 0.00 0.00 2.90
2563 2986 9.892130 CTACTAGTCCTTTTTAATCAACATCCT 57.108 33.333 0.00 0.00 0.00 3.24
2644 3069 2.519013 ACTTGAAAGGCATCCCAAGAC 58.481 47.619 16.22 0.00 39.28 3.01
2709 3137 2.807967 CCAGAGTTTCATCGCAAACAGA 59.192 45.455 7.07 0.00 38.53 3.41
2909 4087 6.878923 AGAAAAGGAAAACACCCAAAGAAAAG 59.121 34.615 0.00 0.00 0.00 2.27
3040 4234 4.089065 GCAATGCTGAATTCGAAGTTTCAC 59.911 41.667 9.57 8.02 30.53 3.18
3621 5156 8.700644 GTTCATAACATAATAGAAGTACCAGCG 58.299 37.037 0.00 0.00 0.00 5.18
3693 5228 2.092429 TGAAGCTTCAGAACAGTTGGGT 60.092 45.455 25.16 0.00 32.50 4.51
3743 5279 3.439857 ACCAAGCAGAAAATAGAGCCA 57.560 42.857 0.00 0.00 0.00 4.75
3819 5367 4.040445 ACACCTGCATACACAAACAAAC 57.960 40.909 0.00 0.00 0.00 2.93
3884 5452 8.995220 GGTGAACTACAGAACATTAATGTGTTA 58.005 33.333 21.46 9.47 42.08 2.41
4035 5604 0.038599 AACTGTGGAGCCATCATGCA 59.961 50.000 0.00 0.00 0.00 3.96
4089 5658 7.149192 CGTTGGAAAAACATTTCGACATAAGTC 60.149 37.037 0.00 0.00 41.46 3.01
4137 5706 0.867746 GAACGCAGCAACATCACTCA 59.132 50.000 0.00 0.00 0.00 3.41
4205 5774 0.464916 GTTCCAAACCGTCCACAGGT 60.465 55.000 0.00 0.00 45.29 4.00
4218 5834 3.250762 CGACAGCATTTTCAGAGTTCCAA 59.749 43.478 0.00 0.00 0.00 3.53
4219 5835 2.807967 CGACAGCATTTTCAGAGTTCCA 59.192 45.455 0.00 0.00 0.00 3.53
4220 5836 2.413371 GCGACAGCATTTTCAGAGTTCC 60.413 50.000 0.00 0.00 44.35 3.62
4221 5837 2.844281 GCGACAGCATTTTCAGAGTTC 58.156 47.619 0.00 0.00 44.35 3.01
4222 5838 2.977405 GCGACAGCATTTTCAGAGTT 57.023 45.000 0.00 0.00 44.35 3.01
4240 5856 2.159234 GCGAAGGAGATCAAGCATATGC 59.841 50.000 20.36 20.36 42.49 3.14
4241 5857 3.432592 CAGCGAAGGAGATCAAGCATATG 59.567 47.826 0.00 0.00 0.00 1.78
4242 5858 3.323115 TCAGCGAAGGAGATCAAGCATAT 59.677 43.478 0.00 0.00 0.00 1.78
4243 5859 2.695147 TCAGCGAAGGAGATCAAGCATA 59.305 45.455 0.00 0.00 0.00 3.14
4244 5860 1.483827 TCAGCGAAGGAGATCAAGCAT 59.516 47.619 0.00 0.00 0.00 3.79
4245 5861 0.897621 TCAGCGAAGGAGATCAAGCA 59.102 50.000 0.00 0.00 0.00 3.91
4246 5862 2.015736 TTCAGCGAAGGAGATCAAGC 57.984 50.000 0.00 0.00 0.00 4.01
4247 5863 3.594134 ACTTTCAGCGAAGGAGATCAAG 58.406 45.455 0.00 0.00 0.00 3.02
4248 5864 3.685139 ACTTTCAGCGAAGGAGATCAA 57.315 42.857 0.00 0.00 0.00 2.57
4249 5865 3.244215 ACAACTTTCAGCGAAGGAGATCA 60.244 43.478 0.00 0.00 0.00 2.92
4250 5866 3.330267 ACAACTTTCAGCGAAGGAGATC 58.670 45.455 7.25 0.00 0.00 2.75
4251 5867 3.330267 GACAACTTTCAGCGAAGGAGAT 58.670 45.455 7.25 0.00 0.00 2.75
4252 5868 2.755650 GACAACTTTCAGCGAAGGAGA 58.244 47.619 7.25 0.00 0.00 3.71
4253 5869 1.457303 CGACAACTTTCAGCGAAGGAG 59.543 52.381 7.25 0.00 0.00 3.69
4254 5870 1.202486 ACGACAACTTTCAGCGAAGGA 60.202 47.619 7.25 0.00 0.00 3.36
4255 5871 1.217882 ACGACAACTTTCAGCGAAGG 58.782 50.000 0.00 1.79 0.00 3.46
4256 5872 3.319238 AAACGACAACTTTCAGCGAAG 57.681 42.857 0.00 0.00 0.00 3.79
4257 5873 3.125487 TGAAAACGACAACTTTCAGCGAA 59.875 39.130 0.00 0.00 36.79 4.70
4258 5874 2.673862 TGAAAACGACAACTTTCAGCGA 59.326 40.909 0.00 0.00 36.79 4.93
4259 5875 3.029074 CTGAAAACGACAACTTTCAGCG 58.971 45.455 10.60 0.00 46.79 5.18
4262 5878 4.932799 TCTCACTGAAAACGACAACTTTCA 59.067 37.500 0.00 0.00 38.81 2.69
4263 5879 5.464965 TCTCACTGAAAACGACAACTTTC 57.535 39.130 0.00 0.00 33.10 2.62
4264 5880 6.258160 CAATCTCACTGAAAACGACAACTTT 58.742 36.000 0.00 0.00 0.00 2.66
4265 5881 5.220854 CCAATCTCACTGAAAACGACAACTT 60.221 40.000 0.00 0.00 0.00 2.66
4266 5882 4.273480 CCAATCTCACTGAAAACGACAACT 59.727 41.667 0.00 0.00 0.00 3.16
4267 5883 4.527564 CCAATCTCACTGAAAACGACAAC 58.472 43.478 0.00 0.00 0.00 3.32
4268 5884 3.563808 CCCAATCTCACTGAAAACGACAA 59.436 43.478 0.00 0.00 0.00 3.18
4269 5885 3.138304 CCCAATCTCACTGAAAACGACA 58.862 45.455 0.00 0.00 0.00 4.35
4270 5886 3.139077 ACCCAATCTCACTGAAAACGAC 58.861 45.455 0.00 0.00 0.00 4.34
4271 5887 3.485463 ACCCAATCTCACTGAAAACGA 57.515 42.857 0.00 0.00 0.00 3.85
4272 5888 4.568152 AAACCCAATCTCACTGAAAACG 57.432 40.909 0.00 0.00 0.00 3.60
4273 5889 5.901552 TCAAAACCCAATCTCACTGAAAAC 58.098 37.500 0.00 0.00 0.00 2.43
4274 5890 6.323482 TGATCAAAACCCAATCTCACTGAAAA 59.677 34.615 0.00 0.00 0.00 2.29
4275 5891 5.832595 TGATCAAAACCCAATCTCACTGAAA 59.167 36.000 0.00 0.00 0.00 2.69
4276 5892 5.384336 TGATCAAAACCCAATCTCACTGAA 58.616 37.500 0.00 0.00 0.00 3.02
4277 5893 4.984295 TGATCAAAACCCAATCTCACTGA 58.016 39.130 0.00 0.00 0.00 3.41
4542 6162 7.621832 TTTTCTTGAATTCATTTGTAGTGCG 57.378 32.000 9.40 0.00 0.00 5.34
4713 6333 4.194640 GAGCTATCTTGAAGTGCATTCCA 58.805 43.478 0.00 0.00 37.08 3.53
4839 6459 1.017177 GCGCGACAGTGGTATTCCAA 61.017 55.000 12.10 0.00 46.15 3.53
4851 6471 4.840168 GGGGTAATAAGCGCGACA 57.160 55.556 12.10 0.00 0.00 4.35
4975 6595 0.450184 CCAAACCGGCGAACTAATGG 59.550 55.000 9.30 4.04 0.00 3.16
4988 6608 5.627780 GTCATTTACATCGTTGTTCCAAACC 59.372 40.000 4.14 0.00 37.28 3.27
5000 6620 8.131731 TGAGACAGATTCTAGTCATTTACATCG 58.868 37.037 14.52 0.00 37.23 3.84
5016 6636 6.482641 GTGAGTGATGCATTATGAGACAGATT 59.517 38.462 0.00 0.00 0.00 2.40
5018 6638 5.354767 GTGAGTGATGCATTATGAGACAGA 58.645 41.667 0.00 0.00 0.00 3.41
5019 6639 4.510711 GGTGAGTGATGCATTATGAGACAG 59.489 45.833 0.00 0.00 0.00 3.51
5020 6640 4.162888 AGGTGAGTGATGCATTATGAGACA 59.837 41.667 0.00 0.00 0.00 3.41
5022 6642 4.443881 CCAGGTGAGTGATGCATTATGAGA 60.444 45.833 0.00 0.00 0.00 3.27
5023 6643 3.813724 CCAGGTGAGTGATGCATTATGAG 59.186 47.826 0.00 0.00 0.00 2.90
5024 6644 3.812262 CCAGGTGAGTGATGCATTATGA 58.188 45.455 0.00 0.00 0.00 2.15
5025 6645 2.292569 GCCAGGTGAGTGATGCATTATG 59.707 50.000 0.00 0.00 0.00 1.90
5026 6646 2.092267 TGCCAGGTGAGTGATGCATTAT 60.092 45.455 0.00 0.00 0.00 1.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.