AutoCloner

Multiple sequence alignment - TraesCS5D01G141900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5D01G141900	chr5D	100.000	2552	0	0	1	2552	227738403	227735852	0.000000e+00	4713.0
1	TraesCS5D01G141900	chr5D	78.636	440	77	12	2074	2504	457656358	457655927	2.500000e-70	276.0
2	TraesCS5D01G141900	chr5D	91.398	93	8	0	1918	2010	260674532	260674624	7.410000e-26	128.0
3	TraesCS5D01G141900	chr5A	95.701	1349	49	8	421	1768	305562809	305561469	0.000000e+00	2161.0
4	TraesCS5D01G141900	chr5A	88.441	372	34	4	5	371	305563740	305563373	8.380000e-120	440.0
5	TraesCS5D01G141900	chr5A	91.797	256	19	2	1755	2010	305561428	305561175	3.120000e-94	355.0
6	TraesCS5D01G141900	chr5A	76.957	460	96	10	2028	2480	699044852	699045308	1.170000e-63	254.0
7	TraesCS5D01G141900	chr5A	90.426	94	8	1	1918	2010	345349743	345349836	3.450000e-24	122.0
8	TraesCS5D01G141900	chr5B	95.920	1299	43	6	467	1765	251344600	251343312	0.000000e+00	2097.0
9	TraesCS5D01G141900	chr5B	89.873	474	41	4	3	474	251346431	251345963	1.010000e-168	603.0
10	TraesCS5D01G141900	chr5B	82.959	534	78	6	2023	2552	251338948	251338424	1.070000e-128	470.0
11	TraesCS5D01G141900	chr5B	92.683	41	2	1	1755	1795	251341026	251340987	9.860000e-05	58.4
12	TraesCS5D01G141900	chr3A	80.455	527	90	13	2028	2545	734817505	734818027	8.560000e-105	390.0
13	TraesCS5D01G141900	chr3A	80.492	528	88	15	2028	2545	734837376	734837898	8.560000e-105	390.0
14	TraesCS5D01G141900	chr3A	78.222	225	40	5	1325	1540	716523802	716523578	4.430000e-28	135.0
15	TraesCS5D01G141900	chr3A	89.362	94	9	1	1918	2010	486930761	486930668	1.600000e-22	117.0
16	TraesCS5D01G141900	chr2B	80.527	493	82	9	2028	2512	641652272	641651786	1.440000e-97	366.0
17	TraesCS5D01G141900	chr2B	89.362	94	9	1	1918	2010	794000362	794000269	1.600000e-22	117.0
18	TraesCS5D01G141900	chr1D	79.806	515	91	12	2037	2544	256111910	256111402	1.870000e-96	363.0
19	TraesCS5D01G141900	chr2D	76.033	605	114	23	1920	2505	589507458	589506866	4.160000e-73	285.0
20	TraesCS5D01G141900	chrUn	76.371	529	88	18	2028	2546	294611456	294611957	1.520000e-62	250.0
21	TraesCS5D01G141900	chr3B	77.184	412	84	8	2028	2431	810627294	810627703	5.490000e-57	231.0
22	TraesCS5D01G141900	chr3B	78.222	225	40	5	1325	1540	776534561	776534337	4.430000e-28	135.0
23	TraesCS5D01G141900	chr3D	78.667	225	39	6	1325	1540	581548707	581548931	9.520000e-30	141.0
24	TraesCS5D01G141900	chr2A	95.062	81	4	0	1918	1998	564613439	564613519	7.410000e-26	128.0
25	TraesCS5D01G141900	chr1B	93.023	86	6	0	1919	2004	675455630	675455715	2.670000e-25	126.0
26	TraesCS5D01G141900	chr1B	89.000	100	8	3	1914	2010	32598385	32598286	1.240000e-23	121.0
27	TraesCS5D01G141900	chr4D	90.323	93	9	0	1918	2010	385521162	385521254	3.450000e-24	122.0
28	TraesCS5D01G141900	chr7B	84.783	92	13	1	1915	2005	592338372	592338463	9.720000e-15	91.6

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5D01G141900	chr5D	227735852	227738403	2551	True	4713.000000	4713	100.000000	1	2552	1	chr5D.!!$R1	2551
1	TraesCS5D01G141900	chr5A	305561175	305563740	2565	True	985.333333	2161	91.979667	5	2010	3	chr5A.!!$R1	2005
2	TraesCS5D01G141900	chr5B	251338424	251346431	8007	True	807.100000	2097	90.358750	3	2552	4	chr5B.!!$R1	2549
3	TraesCS5D01G141900	chr3A	734817505	734818027	522	False	390.000000	390	80.455000	2028	2545	1	chr3A.!!$F1	517
4	TraesCS5D01G141900	chr3A	734837376	734837898	522	False	390.000000	390	80.492000	2028	2545	1	chr3A.!!$F2	517
5	TraesCS5D01G141900	chr1D	256111402	256111910	508	True	363.000000	363	79.806000	2037	2544	1	chr1D.!!$R1	507
6	TraesCS5D01G141900	chr2D	589506866	589507458	592	True	285.000000	285	76.033000	1920	2505	1	chr2D.!!$R1	585
7	TraesCS5D01G141900	chrUn	294611456	294611957	501	False	250.000000	250	76.371000	2028	2546	1	chrUn.!!$F1	518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
285	287	0.101399	CAGCCCACGACACTAGCTAG	59.899	60.0	19.44	19.44	31.23	3.42	F
304	306	0.447801	GCAATGGCCGAGTACAACAG	59.552	55.0	0.00	0.00	0.00	3.16	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1125	3015	0.454600	GGACGGATCTCAGCGTTGTA	59.545	55.000	0.0	0.0	0.0	2.41	R
2220	8221	1.455773	TCTCCGGTGGATCTCGCAT	60.456	57.895	0.0	0.0	0.0	4.73	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
98	99	0.456221	ACACCATCCTCTCGCTAACG	59.544	55.000	0.00	0.00	42.01	3.18
136	137	5.241949	AGACGAATACTACACATCTCCCATC	59.758	44.000	0.00	0.00	0.00	3.51
144	145	0.176680	ACATCTCCCATCTGTGCGAC	59.823	55.000	0.00	0.00	0.00	5.19
251	253	3.943381	TGACAATGCCTTCTCATGTCATC	59.057	43.478	3.01	0.00	33.68	2.92
283	285	1.599606	CTCAGCCCACGACACTAGCT	61.600	60.000	0.00	0.00	0.00	3.32
284	286	0.323087	TCAGCCCACGACACTAGCTA	60.323	55.000	0.00	0.00	31.23	3.32
285	287	0.101399	CAGCCCACGACACTAGCTAG	59.899	60.000	19.44	19.44	31.23	3.42
286	288	1.227002	GCCCACGACACTAGCTAGC	60.227	63.158	20.91	6.62	0.00	3.42
304	306	0.447801	GCAATGGCCGAGTACAACAG	59.552	55.000	0.00	0.00	0.00	3.16
312	314	2.802057	GCCGAGTACAACAGTGACAACT	60.802	50.000	0.00	0.00	36.98	3.16
327	329	2.101582	GACAACTGTGACACCTGACTCT	59.898	50.000	2.45	0.00	0.00	3.24
330	332	4.161565	ACAACTGTGACACCTGACTCTAAA	59.838	41.667	2.45	0.00	0.00	1.85
341	343	3.054802	CCTGACTCTAAAAGGAGTGGCAT	60.055	47.826	1.71	0.00	45.32	4.40
371	377	2.969950	ACTTGCTAGACCACCAACACTA	59.030	45.455	1.04	0.00	0.00	2.74
372	378	3.006967	ACTTGCTAGACCACCAACACTAG	59.993	47.826	1.04	0.00	36.44	2.57
381	387	3.279434	CCACCAACACTAGATTTAGGCC	58.721	50.000	0.00	0.00	0.00	5.19
385	391	3.378427	CCAACACTAGATTTAGGCCAAGC	59.622	47.826	5.01	0.00	0.00	4.01
425	935	1.303643	GGGAAGGCTTCACAGTGGG	60.304	63.158	27.17	0.00	31.89	4.61
446	966	3.821033	GGCACAAAAGAGTTAGTCCATGT	59.179	43.478	0.00	0.00	0.00	3.21
452	972	4.543590	AAGAGTTAGTCCATGTCCACTG	57.456	45.455	0.00	0.00	0.00	3.66
455	975	0.618458	TTAGTCCATGTCCACTGGCC	59.382	55.000	0.00	0.00	33.56	5.36
516	2406	1.393539	CGATGGCGACGTGAAAATCTT	59.606	47.619	0.00	0.00	40.82	2.40
588	2478	9.436957	AATAATCTACATTGAATAACTAGCGGG	57.563	33.333	0.00	0.00	0.00	6.13
659	2549	2.612221	GGTCATTTTCGACGAAGAGGGT	60.612	50.000	10.61	0.00	36.73	4.34
661	2551	3.497262	GTCATTTTCGACGAAGAGGGTTT	59.503	43.478	10.61	0.00	0.00	3.27
662	2552	4.687483	GTCATTTTCGACGAAGAGGGTTTA	59.313	41.667	10.61	0.00	0.00	2.01
674	2564	8.037382	ACGAAGAGGGTTTAGCTAAATTTAAC	57.963	34.615	21.28	9.22	0.00	2.01
960	2850	1.232792	CCTCTCTCCCTCCTCCTGG	59.767	68.421	0.00	0.00	0.00	4.45
972	2862	0.615850	CCTCCTGGTCCACTCTTTCC	59.384	60.000	0.00	0.00	0.00	3.13
990	2880	1.573436	CCGAGATACGTACGAGCCC	59.427	63.158	24.41	7.86	40.78	5.19
1125	3015	2.355513	GGCATCAGATGACCAGTCTGTT	60.356	50.000	15.12	0.00	42.82	3.16
1133	3023	1.411246	TGACCAGTCTGTTACAACGCT	59.589	47.619	0.00	0.00	0.00	5.07
1248	3138	4.735132	GAGGTGGCGCTGCGTACA	62.735	66.667	24.04	19.25	0.00	2.90
1555	3445	0.376852	GATGCTTGCGCCGTGAATTA	59.623	50.000	4.18	0.00	34.43	1.40
1659	3549	6.384258	TTTGTTCTTGATTTTCGATGTGGA	57.616	33.333	0.00	0.00	0.00	4.02
1726	3616	3.667960	CGACGAAGAGGCCAAAAAGAATG	60.668	47.826	5.01	0.00	0.00	2.67
1737	3627	5.580691	GGCCAAAAAGAATGTTAAGGTATGC	59.419	40.000	0.00	0.00	0.00	3.14
1812	7766	6.349033	GCGTGTTACCATACCTCAAGAATTTT	60.349	38.462	0.00	0.00	0.00	1.82
1813	7767	7.021196	CGTGTTACCATACCTCAAGAATTTTG	58.979	38.462	0.00	0.00	0.00	2.44
1885	7839	3.002348	GCATTATGCGTTTGTCCTAGTCC	59.998	47.826	0.00	0.00	31.71	3.85
1891	7845	2.353803	GCGTTTGTCCTAGTCCACATCT	60.354	50.000	0.00	0.00	0.00	2.90
1975	7929	6.281405	ACTGTCAAGGTAGTACAAAGAACAG	58.719	40.000	15.03	15.03	0.00	3.16
2010	7966	6.636562	AATACATCTAGTTCCGTAGTCCAG	57.363	41.667	0.00	0.00	0.00	3.86
2013	7969	3.014304	TCTAGTTCCGTAGTCCAGCAT	57.986	47.619	0.00	0.00	0.00	3.79
2014	7970	4.160642	TCTAGTTCCGTAGTCCAGCATA	57.839	45.455	0.00	0.00	0.00	3.14
2016	7972	2.736347	AGTTCCGTAGTCCAGCATAGT	58.264	47.619	0.00	0.00	0.00	2.12
2021	7977	4.018490	TCCGTAGTCCAGCATAGTTGTAA	58.982	43.478	0.00	0.00	0.00	2.41
2023	7979	5.128171	TCCGTAGTCCAGCATAGTTGTAAAT	59.872	40.000	0.00	0.00	0.00	1.40
2025	7981	6.273825	CGTAGTCCAGCATAGTTGTAAATCT	58.726	40.000	0.00	0.00	0.00	2.40
2035	8032	3.105283	AGTTGTAAATCTAGAGCCGGGT	58.895	45.455	5.45	5.45	0.00	5.28
2049	8046	4.004982	GAGCCGGGTAAATCTTGTTGTAA	58.995	43.478	5.91	0.00	0.00	2.41
2100	8097	1.369091	CCATAGAACCAGCGCACCAC	61.369	60.000	11.47	0.00	0.00	4.16
2136	8133	5.295950	CACCGATGAAGAGAAGCATAGATT	58.704	41.667	0.00	0.00	0.00	2.40
2165	8166	5.128827	GGATCCAACCTATAGACAGACACAA	59.871	44.000	6.95	0.00	0.00	3.33
2220	8221	1.286354	GACAAACGCCGACCGAATCA	61.286	55.000	0.00	0.00	41.02	2.57
2241	8242	1.739338	GCGAGATCCACCGGAGACAT	61.739	60.000	9.46	0.00	34.05	3.06
2247	8248	0.629596	TCCACCGGAGACATACCTCT	59.370	55.000	9.46	0.00	33.79	3.69
2258	8260	3.011369	AGACATACCTCTACACACCTCCA	59.989	47.826	0.00	0.00	0.00	3.86
2262	8264	0.966920	CCTCTACACACCTCCAACGT	59.033	55.000	0.00	0.00	0.00	3.99
2283	8285	2.344592	TGGTAGAAACACCACCAGGAT	58.655	47.619	0.00	0.00	43.76	3.24
2299	8302	4.571369	CAGGATGGGATAAGATGCAGAT	57.429	45.455	0.00	0.00	0.00	2.90
2329	8332	0.530211	CATCTTCAGAGAGCTGCCGG	60.530	60.000	0.00	0.00	42.01	6.13
2359	8362	2.036992	CTCTCTCAGCAGGACACAAACT	59.963	50.000	0.00	0.00	0.00	2.66
2405	8409	1.048601	AAACGAAGCCCTCTCACTGA	58.951	50.000	0.00	0.00	0.00	3.41
2437	8442	2.759114	CACCACACCTCCATGGCT	59.241	61.111	6.96	0.00	39.84	4.75
2453	8458	2.679082	TGGCTCCCTAAGACCATAGAC	58.321	52.381	0.00	0.00	28.35	2.59
2499	8505	1.032014	GCAGAAGGCACAAGAAACCA	58.968	50.000	0.00	0.00	43.97	3.67

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	3.898627	CTCTCGGTGCAAGACGCGT	62.899	63.158	13.85	13.85	46.97	6.01
1	2	3.175240	CTCTCGGTGCAAGACGCG	61.175	66.667	3.53	3.53	46.97	6.01
20	21	3.383505	TGACCAGCTACGCATATGTAGTT	59.616	43.478	4.29	0.00	43.03	2.24
98	99	0.669318	TCGTCTTTGCGTGGGTGATC	60.669	55.000	0.00	0.00	0.00	2.92
107	108	4.798907	AGATGTGTAGTATTCGTCTTTGCG	59.201	41.667	0.00	0.00	0.00	4.85
136	137	2.103143	CCTCGCCTAGTCGCACAG	59.897	66.667	0.00	0.00	0.00	3.66
283	285	1.276705	TGTTGTACTCGGCCATTGCTA	59.723	47.619	2.24	0.00	37.74	3.49
284	286	0.036164	TGTTGTACTCGGCCATTGCT	59.964	50.000	2.24	0.00	37.74	3.91
285	287	0.447801	CTGTTGTACTCGGCCATTGC	59.552	55.000	2.24	0.00	0.00	3.56
286	288	1.464608	CACTGTTGTACTCGGCCATTG	59.535	52.381	2.24	0.00	0.00	2.82
304	306	1.933853	GTCAGGTGTCACAGTTGTCAC	59.066	52.381	5.12	0.00	40.04	3.67
312	314	3.964688	TCCTTTTAGAGTCAGGTGTCACA	59.035	43.478	5.12	0.00	0.00	3.58
341	343	3.055819	GTGGTCTAGCAAGTTGATGGAGA	60.056	47.826	7.49	0.00	0.00	3.71
352	358	3.236047	TCTAGTGTTGGTGGTCTAGCAA	58.764	45.455	0.00	0.00	43.97	3.91
353	359	2.884320	TCTAGTGTTGGTGGTCTAGCA	58.116	47.619	0.00	0.00	32.53	3.49
371	377	5.727434	CAATTTTGAGCTTGGCCTAAATCT	58.273	37.500	3.32	0.00	0.00	2.40
372	378	4.330894	GCAATTTTGAGCTTGGCCTAAATC	59.669	41.667	3.32	0.00	0.00	2.17
381	387	2.750948	ACTGCTGCAATTTTGAGCTTG	58.249	42.857	3.02	0.00	34.58	4.01
385	391	4.232221	CAACCTACTGCTGCAATTTTGAG	58.768	43.478	3.02	0.00	0.00	3.02
425	935	4.083271	GGACATGGACTAACTCTTTTGTGC	60.083	45.833	0.00	0.00	31.10	4.57
455	975	2.718731	TTTTTGCTGCCGTCACCG	59.281	55.556	0.00	0.00	0.00	4.94
516	2406	9.428097	CATCCAATCTTACGATGAGATTAATGA	57.572	33.333	17.41	12.79	40.82	2.57
564	2454	7.233962	TCCCCGCTAGTTATTCAATGTAGATTA	59.766	37.037	0.00	0.00	0.00	1.75
565	2455	6.042781	TCCCCGCTAGTTATTCAATGTAGATT	59.957	38.462	0.00	0.00	0.00	2.40
572	2462	4.772886	AACTCCCCGCTAGTTATTCAAT	57.227	40.909	0.00	0.00	35.44	2.57
588	2478	5.182001	AGACAACACTAATCATGCAAACTCC	59.818	40.000	0.00	0.00	0.00	3.85
662	2552	9.528489	TCATGGAAGGTTTAGTTAAATTTAGCT	57.472	29.630	17.28	17.28	0.00	3.32
674	2564	5.105756	GGTGGACAAATCATGGAAGGTTTAG	60.106	44.000	0.00	0.00	0.00	1.85
681	2571	3.330405	TGAGAGGTGGACAAATCATGGAA	59.670	43.478	0.00	0.00	0.00	3.53
745	2635	5.586339	TCTTTCATTCGTTTGCATGAAACA	58.414	33.333	16.01	0.00	43.76	2.83
931	2821	1.038681	GGAGAGAGGAAGACGGGGAC	61.039	65.000	0.00	0.00	0.00	4.46
938	2828	0.930726	GGAGGAGGGAGAGAGGAAGA	59.069	60.000	0.00	0.00	0.00	2.87
960	2850	2.223525	CGTATCTCGGGAAAGAGTGGAC	60.224	54.545	0.00	0.00	39.21	4.02
972	2862	1.162181	TGGGCTCGTACGTATCTCGG	61.162	60.000	16.05	0.00	44.69	4.63
990	2880	2.486472	AGAACTTCATGGCTGTCCTG	57.514	50.000	0.00	0.00	0.00	3.86
1125	3015	0.454600	GGACGGATCTCAGCGTTGTA	59.545	55.000	0.00	0.00	0.00	2.41
1133	3023	2.362503	ACGGCAGGACGGATCTCA	60.363	61.111	0.00	0.00	38.39	3.27
1555	3445	7.776618	TTAGATAGGGACACGTATCATCAAT	57.223	36.000	0.00	0.00	43.50	2.57
1659	3549	6.417258	TGATTTCATCACCATGAGTACACAT	58.583	36.000	0.00	0.00	40.28	3.21
1726	3616	6.389906	AGTTGCAAATCAAGCATACCTTAAC	58.610	36.000	0.00	0.00	42.33	2.01
1737	3627	6.313411	TGTTTTGGAGAAAGTTGCAAATCAAG	59.687	34.615	0.00	0.00	38.04	3.02
2010	7966	4.686554	CCGGCTCTAGATTTACAACTATGC	59.313	45.833	0.00	0.00	0.00	3.14
2013	7969	4.284178	ACCCGGCTCTAGATTTACAACTA	58.716	43.478	0.00	0.00	0.00	2.24
2014	7970	3.105283	ACCCGGCTCTAGATTTACAACT	58.895	45.455	0.00	0.00	0.00	3.16
2016	7972	5.680594	TTTACCCGGCTCTAGATTTACAA	57.319	39.130	0.00	0.00	0.00	2.41
2021	7977	4.409247	ACAAGATTTACCCGGCTCTAGATT	59.591	41.667	0.00	0.00	0.00	2.40
2023	7979	3.371965	ACAAGATTTACCCGGCTCTAGA	58.628	45.455	0.00	0.00	0.00	2.43
2025	7981	3.262405	ACAACAAGATTTACCCGGCTCTA	59.738	43.478	0.00	0.00	0.00	2.43
2035	8032	9.653287	CCTGACTGTCTATTACAACAAGATTTA	57.347	33.333	9.51	0.00	37.74	1.40
2049	8046	5.300752	CACAACAACTTCCTGACTGTCTAT	58.699	41.667	9.51	0.00	0.00	1.98
2100	8097	1.791103	ATCGGTGGCGGTTGTTGTTG	61.791	55.000	0.00	0.00	0.00	3.33
2165	8166	4.703897	TGTGGATCTTGTCTTTCTTCGTT	58.296	39.130	0.00	0.00	0.00	3.85
2220	8221	1.455773	TCTCCGGTGGATCTCGCAT	60.456	57.895	0.00	0.00	0.00	4.73
2241	8242	2.165167	CGTTGGAGGTGTGTAGAGGTA	58.835	52.381	0.00	0.00	0.00	3.08
2265	8267	2.618045	CCCATCCTGGTGGTGTTTCTAC	60.618	54.545	12.36	0.00	37.57	2.59
2283	8285	9.896645	GAATAAGATTATCTGCATCTTATCCCA	57.103	33.333	16.18	0.00	46.48	4.37
2292	8295	9.451002	CTGAAGATGGAATAAGATTATCTGCAT	57.549	33.333	0.00	0.00	33.99	3.96
2299	8302	8.366401	CAGCTCTCTGAAGATGGAATAAGATTA	58.634	37.037	0.00	0.00	42.95	1.75
2389	8393	2.223923	CCTTATCAGTGAGAGGGCTTCG	60.224	54.545	14.70	0.00	0.00	3.79
2399	8403	2.317040	GATCCCGACCCTTATCAGTGA	58.683	52.381	0.00	0.00	0.00	3.41
2401	8405	1.062428	TGGATCCCGACCCTTATCAGT	60.062	52.381	9.90	0.00	0.00	3.41
2405	8409	0.030501	TGGTGGATCCCGACCCTTAT	60.031	55.000	16.68	0.00	34.77	1.73
2437	8442	2.171237	TCGTCGTCTATGGTCTTAGGGA	59.829	50.000	0.00	0.00	0.00	4.20
2453	8458	2.758089	CCACCGGTCTACCTCGTCG	61.758	68.421	2.59	0.00	0.00	5.12
2499	8505	4.404185	AGAAAAAGGACCCTTTGGCTAT	57.596	40.909	14.18	0.00	44.50	2.97

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.