Multiple sequence alignment - TraesCS5D01G141100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G141100 chr5D 100.000 2222 0 0 1 2222 224945009 224942788 0.000000e+00 4104.0
1 TraesCS5D01G141100 chr5A 96.095 1306 44 7 892 2193 299504627 299503325 0.000000e+00 2122.0
2 TraesCS5D01G141100 chr5A 91.971 274 21 1 313 585 299588418 299588145 1.240000e-102 383.0
3 TraesCS5D01G141100 chr5A 93.296 179 11 1 111 288 299588835 299588657 1.690000e-66 263.0
4 TraesCS5D01G141100 chr5B 95.103 776 23 6 818 1581 246180836 246181608 0.000000e+00 1208.0
5 TraesCS5D01G141100 chr5B 96.360 522 16 3 1613 2133 246181609 246182128 0.000000e+00 856.0
6 TraesCS5D01G141100 chr5B 86.644 292 26 8 1 289 246150515 246150796 5.960000e-81 311.0
7 TraesCS5D01G141100 chr5B 80.057 351 26 24 300 645 246150913 246151224 1.030000e-53 220.0
8 TraesCS5D01G141100 chr3B 89.895 287 26 3 1630 1914 107971281 107970996 1.250000e-97 366.0
9 TraesCS5D01G141100 chr4D 95.575 226 10 0 997 1222 112724290 112724515 1.620000e-96 363.0
10 TraesCS5D01G141100 chr4D 88.182 110 11 2 646 754 3414343 3414451 1.790000e-26 130.0
11 TraesCS5D01G141100 chr4D 84.173 139 15 7 647 782 478261322 478261456 6.440000e-26 128.0
12 TraesCS5D01G141100 chr4A 95.575 226 10 0 997 1222 464696966 464696741 1.620000e-96 363.0
13 TraesCS5D01G141100 chr4B 95.133 226 11 0 997 1222 173174311 173174536 7.550000e-95 357.0
14 TraesCS5D01G141100 chr7B 87.829 304 33 4 1611 1911 586965265 586965567 9.760000e-94 353.0
15 TraesCS5D01G141100 chr7A 88.542 288 31 2 1625 1911 275228647 275228933 4.540000e-92 348.0
16 TraesCS5D01G141100 chr7A 88.581 289 30 2 1625 1911 275268813 275269100 4.540000e-92 348.0
17 TraesCS5D01G141100 chr7A 92.135 178 13 1 1735 1911 695939612 695939789 1.320000e-62 250.0
18 TraesCS5D01G141100 chr7A 89.333 150 15 1 1763 1911 78726942 78727091 1.050000e-43 187.0
19 TraesCS5D01G141100 chr7A 79.235 183 26 8 646 817 112966784 112966965 1.390000e-22 117.0
20 TraesCS5D01G141100 chr1D 86.441 295 33 7 1619 1911 248979833 248980122 1.280000e-82 316.0
21 TraesCS5D01G141100 chr2D 83.429 175 17 8 646 817 322132120 322132285 3.820000e-33 152.0
22 TraesCS5D01G141100 chr2D 88.235 119 10 4 646 763 9766228 9766113 2.980000e-29 139.0
23 TraesCS5D01G141100 chr2D 86.441 118 12 4 647 763 234362346 234362460 2.320000e-25 126.0
24 TraesCS5D01G141100 chr7D 93.548 62 4 0 693 754 156009828 156009767 2.350000e-15 93.5
25 TraesCS5D01G141100 chr1B 81.356 118 18 4 647 763 490000269 490000383 2.350000e-15 93.5
26 TraesCS5D01G141100 chr1B 94.643 56 3 0 1625 1680 41823213 41823268 1.090000e-13 87.9
27 TraesCS5D01G141100 chrUn 89.231 65 7 0 692 756 71310385 71310449 5.090000e-12 82.4
28 TraesCS5D01G141100 chr2A 100.000 38 0 0 780 817 135184766 135184803 1.100000e-08 71.3
29 TraesCS5D01G141100 chr2A 97.368 38 1 0 646 683 649477749 649477712 5.120000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G141100 chr5D 224942788 224945009 2221 True 4104.0 4104 100.0000 1 2222 1 chr5D.!!$R1 2221
1 TraesCS5D01G141100 chr5A 299503325 299504627 1302 True 2122.0 2122 96.0950 892 2193 1 chr5A.!!$R1 1301
2 TraesCS5D01G141100 chr5A 299588145 299588835 690 True 323.0 383 92.6335 111 585 2 chr5A.!!$R2 474
3 TraesCS5D01G141100 chr5B 246180836 246182128 1292 False 1032.0 1208 95.7315 818 2133 2 chr5B.!!$F2 1315
4 TraesCS5D01G141100 chr5B 246150515 246151224 709 False 265.5 311 83.3505 1 645 2 chr5B.!!$F1 644

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
74 78 0.319728 ATAGGTGCCGCAGCTCTATG 59.68 55.0 27.52 0.0 41.5 2.23 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1260 1494 0.095935 CAATTTCGACGGAGCAGCAG 59.904 55.0 0.0 0.0 0.0 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 70 1.133575 AGTAGGTAGATAGGTGCCGCA 60.134 52.381 0.00 0.00 0.00 5.69
74 78 0.319728 ATAGGTGCCGCAGCTCTATG 59.680 55.000 27.52 0.00 41.50 2.23
87 91 3.118112 CAGCTCTATGGTTTCATGGGAGT 60.118 47.826 0.00 0.00 37.14 3.85
92 96 5.036916 TCTATGGTTTCATGGGAGTAAGGT 58.963 41.667 0.00 0.00 34.96 3.50
210 215 8.027440 TGCACAAATTTATTAATCAAACCAGC 57.973 30.769 0.00 0.00 0.00 4.85
226 231 1.156736 CAGCCTTACGAACAACCTGG 58.843 55.000 0.00 0.00 0.00 4.45
283 288 4.453480 ACCATCTTTTTCCTCCTGAACA 57.547 40.909 0.00 0.00 31.05 3.18
405 625 1.548719 CAGTCCACCTACGGATGAACA 59.451 52.381 0.00 0.00 37.41 3.18
423 643 5.102313 TGAACAGTGCAGATACGATAACAG 58.898 41.667 0.00 0.00 0.00 3.16
427 647 4.208047 CAGTGCAGATACGATAACAGAAGC 59.792 45.833 0.00 0.00 0.00 3.86
429 649 2.726760 GCAGATACGATAACAGAAGCCG 59.273 50.000 0.00 0.00 0.00 5.52
430 650 3.795826 GCAGATACGATAACAGAAGCCGT 60.796 47.826 0.00 0.00 37.27 5.68
432 652 3.884091 AGATACGATAACAGAAGCCGTCT 59.116 43.478 0.00 0.00 36.88 4.18
434 654 1.202154 ACGATAACAGAAGCCGTCTCG 60.202 52.381 0.00 0.00 32.70 4.04
585 806 2.330231 TTACAGCTGCGTGCAAATTC 57.670 45.000 15.27 0.00 45.94 2.17
586 807 1.233919 TACAGCTGCGTGCAAATTCA 58.766 45.000 15.27 0.00 45.94 2.57
587 808 0.599558 ACAGCTGCGTGCAAATTCAT 59.400 45.000 15.27 0.00 45.94 2.57
588 809 1.000060 ACAGCTGCGTGCAAATTCATT 60.000 42.857 15.27 0.00 45.94 2.57
589 810 1.652124 CAGCTGCGTGCAAATTCATTC 59.348 47.619 0.00 0.00 45.94 2.67
590 811 1.270274 AGCTGCGTGCAAATTCATTCA 59.730 42.857 4.37 0.00 45.94 2.57
591 812 2.094390 AGCTGCGTGCAAATTCATTCAT 60.094 40.909 4.37 0.00 45.94 2.57
592 813 2.028763 GCTGCGTGCAAATTCATTCATG 59.971 45.455 0.00 0.00 42.31 3.07
595 816 2.855963 GCGTGCAAATTCATTCATGGAG 59.144 45.455 0.00 0.00 0.00 3.86
596 817 3.441163 CGTGCAAATTCATTCATGGAGG 58.559 45.455 0.00 0.00 0.00 4.30
597 818 3.119388 CGTGCAAATTCATTCATGGAGGT 60.119 43.478 0.00 0.00 0.00 3.85
598 819 4.427312 GTGCAAATTCATTCATGGAGGTC 58.573 43.478 0.00 0.00 0.00 3.85
600 821 4.158949 TGCAAATTCATTCATGGAGGTCTG 59.841 41.667 0.00 0.00 0.00 3.51
601 822 4.441079 GCAAATTCATTCATGGAGGTCTGG 60.441 45.833 0.00 0.00 0.00 3.86
602 823 3.589951 ATTCATTCATGGAGGTCTGGG 57.410 47.619 0.00 0.00 0.00 4.45
603 824 2.268796 TCATTCATGGAGGTCTGGGA 57.731 50.000 0.00 0.00 0.00 4.37
604 825 2.561187 TCATTCATGGAGGTCTGGGAA 58.439 47.619 0.00 0.00 0.00 3.97
664 886 5.921004 TTTGAGCATAATTGGTTTGTTGC 57.079 34.783 0.00 0.00 32.62 4.17
665 887 4.870123 TGAGCATAATTGGTTTGTTGCT 57.130 36.364 0.00 0.00 39.44 3.91
666 888 5.973899 TGAGCATAATTGGTTTGTTGCTA 57.026 34.783 0.00 0.00 37.89 3.49
667 889 6.338214 TGAGCATAATTGGTTTGTTGCTAA 57.662 33.333 0.00 0.00 37.89 3.09
668 890 6.934056 TGAGCATAATTGGTTTGTTGCTAAT 58.066 32.000 0.00 0.00 37.89 1.73
669 891 8.060931 TGAGCATAATTGGTTTGTTGCTAATA 57.939 30.769 0.00 0.00 37.89 0.98
670 892 8.694540 TGAGCATAATTGGTTTGTTGCTAATAT 58.305 29.630 0.00 0.00 37.89 1.28
671 893 9.533253 GAGCATAATTGGTTTGTTGCTAATATT 57.467 29.630 0.00 0.00 37.89 1.28
672 894 9.889128 AGCATAATTGGTTTGTTGCTAATATTT 57.111 25.926 0.00 0.00 36.75 1.40
673 895 9.919348 GCATAATTGGTTTGTTGCTAATATTTG 57.081 29.630 0.00 0.00 0.00 2.32
675 897 6.983474 ATTGGTTTGTTGCTAATATTTGGC 57.017 33.333 0.00 0.00 37.69 4.52
676 898 5.736951 TGGTTTGTTGCTAATATTTGGCT 57.263 34.783 12.22 0.00 38.08 4.75
677 899 6.107901 TGGTTTGTTGCTAATATTTGGCTT 57.892 33.333 12.22 0.00 38.08 4.35
678 900 5.931146 TGGTTTGTTGCTAATATTTGGCTTG 59.069 36.000 12.22 0.00 38.08 4.01
679 901 5.163864 GGTTTGTTGCTAATATTTGGCTTGC 60.164 40.000 12.22 0.00 38.08 4.01
680 902 4.122143 TGTTGCTAATATTTGGCTTGCC 57.878 40.909 4.43 4.43 38.08 4.52
681 903 3.513119 TGTTGCTAATATTTGGCTTGCCA 59.487 39.130 10.65 10.65 38.08 4.92
682 904 4.020751 TGTTGCTAATATTTGGCTTGCCAA 60.021 37.500 21.59 21.59 38.08 4.52
683 905 5.118286 GTTGCTAATATTTGGCTTGCCAAT 58.882 37.500 25.17 17.45 38.08 3.16
684 906 6.127225 TGTTGCTAATATTTGGCTTGCCAATA 60.127 34.615 25.17 18.73 38.08 1.90
685 907 5.841810 TGCTAATATTTGGCTTGCCAATAC 58.158 37.500 25.17 11.59 38.08 1.89
686 908 5.221422 TGCTAATATTTGGCTTGCCAATACC 60.221 40.000 25.17 8.88 38.08 2.73
687 909 5.221422 GCTAATATTTGGCTTGCCAATACCA 60.221 40.000 25.17 12.59 33.94 3.25
688 910 5.690464 AATATTTGGCTTGCCAATACCAA 57.310 34.783 25.17 12.24 40.34 3.67
690 912 3.845781 TTTGGCTTGCCAATACCAAAA 57.154 38.095 25.17 8.07 46.34 2.44
691 913 2.829741 TGGCTTGCCAATACCAAAAC 57.170 45.000 12.40 0.00 0.00 2.43
692 914 2.324541 TGGCTTGCCAATACCAAAACT 58.675 42.857 12.40 0.00 0.00 2.66
693 915 2.703007 TGGCTTGCCAATACCAAAACTT 59.297 40.909 12.40 0.00 0.00 2.66
694 916 3.066380 GGCTTGCCAATACCAAAACTTG 58.934 45.455 6.79 0.00 0.00 3.16
695 917 2.480037 GCTTGCCAATACCAAAACTTGC 59.520 45.455 0.00 0.00 0.00 4.01
696 918 2.829741 TGCCAATACCAAAACTTGCC 57.170 45.000 0.00 0.00 0.00 4.52
697 919 2.042464 TGCCAATACCAAAACTTGCCA 58.958 42.857 0.00 0.00 0.00 4.92
698 920 2.435805 TGCCAATACCAAAACTTGCCAA 59.564 40.909 0.00 0.00 0.00 4.52
699 921 2.805671 GCCAATACCAAAACTTGCCAAC 59.194 45.455 0.00 0.00 0.00 3.77
700 922 3.494223 GCCAATACCAAAACTTGCCAACT 60.494 43.478 0.00 0.00 0.00 3.16
701 923 4.262249 GCCAATACCAAAACTTGCCAACTA 60.262 41.667 0.00 0.00 0.00 2.24
702 924 5.568624 GCCAATACCAAAACTTGCCAACTAT 60.569 40.000 0.00 0.00 0.00 2.12
703 925 6.463360 CCAATACCAAAACTTGCCAACTATT 58.537 36.000 0.00 0.00 0.00 1.73
704 926 6.368516 CCAATACCAAAACTTGCCAACTATTG 59.631 38.462 0.00 0.00 0.00 1.90
725 947 5.559148 TGGAATTACCAAAACTTGCCAAT 57.441 34.783 0.00 0.00 46.75 3.16
726 948 5.934781 TGGAATTACCAAAACTTGCCAATT 58.065 33.333 0.00 0.00 46.75 2.32
727 949 7.067496 TGGAATTACCAAAACTTGCCAATTA 57.933 32.000 0.00 0.00 46.75 1.40
728 950 7.684529 TGGAATTACCAAAACTTGCCAATTAT 58.315 30.769 0.00 0.00 46.75 1.28
729 951 8.160106 TGGAATTACCAAAACTTGCCAATTATT 58.840 29.630 0.00 0.00 46.75 1.40
730 952 8.450180 GGAATTACCAAAACTTGCCAATTATTG 58.550 33.333 0.00 0.00 38.79 1.90
746 968 8.945481 CCAATTATTGGCAATTTTATGTGAGA 57.055 30.769 19.21 0.00 45.17 3.27
747 969 9.550406 CCAATTATTGGCAATTTTATGTGAGAT 57.450 29.630 19.21 0.00 45.17 2.75
751 973 5.772825 TGGCAATTTTATGTGAGATAGGC 57.227 39.130 0.00 0.00 0.00 3.93
752 974 5.199723 TGGCAATTTTATGTGAGATAGGCA 58.800 37.500 0.00 0.00 0.00 4.75
753 975 5.655974 TGGCAATTTTATGTGAGATAGGCAA 59.344 36.000 0.00 0.00 0.00 4.52
754 976 6.183360 TGGCAATTTTATGTGAGATAGGCAAG 60.183 38.462 0.00 0.00 0.00 4.01
755 977 6.039717 GGCAATTTTATGTGAGATAGGCAAGA 59.960 38.462 0.00 0.00 0.00 3.02
756 978 7.416664 GGCAATTTTATGTGAGATAGGCAAGAA 60.417 37.037 0.00 0.00 0.00 2.52
757 979 7.433425 GCAATTTTATGTGAGATAGGCAAGAAC 59.567 37.037 0.00 0.00 0.00 3.01
758 980 7.573968 ATTTTATGTGAGATAGGCAAGAACC 57.426 36.000 0.00 0.00 0.00 3.62
759 981 5.692115 TTATGTGAGATAGGCAAGAACCA 57.308 39.130 0.00 0.00 0.00 3.67
760 982 4.574674 ATGTGAGATAGGCAAGAACCAA 57.425 40.909 0.00 0.00 0.00 3.67
761 983 3.674997 TGTGAGATAGGCAAGAACCAAC 58.325 45.455 0.00 0.00 0.00 3.77
762 984 3.327757 TGTGAGATAGGCAAGAACCAACT 59.672 43.478 0.00 0.00 0.00 3.16
763 985 4.530553 TGTGAGATAGGCAAGAACCAACTA 59.469 41.667 0.00 0.00 0.00 2.24
764 986 5.012664 TGTGAGATAGGCAAGAACCAACTAA 59.987 40.000 0.00 0.00 0.00 2.24
765 987 5.582665 GTGAGATAGGCAAGAACCAACTAAG 59.417 44.000 0.00 0.00 0.00 2.18
766 988 5.248477 TGAGATAGGCAAGAACCAACTAAGT 59.752 40.000 0.00 0.00 0.00 2.24
767 989 6.439375 TGAGATAGGCAAGAACCAACTAAGTA 59.561 38.462 0.00 0.00 0.00 2.24
768 990 6.879400 AGATAGGCAAGAACCAACTAAGTAG 58.121 40.000 0.00 0.00 0.00 2.57
769 991 4.976540 AGGCAAGAACCAACTAAGTAGT 57.023 40.909 0.00 0.00 38.39 2.73
770 992 7.618512 AGATAGGCAAGAACCAACTAAGTAGTA 59.381 37.037 0.00 0.00 34.99 1.82
771 993 5.791666 AGGCAAGAACCAACTAAGTAGTAC 58.208 41.667 0.00 0.00 34.99 2.73
772 994 4.934001 GGCAAGAACCAACTAAGTAGTACC 59.066 45.833 0.00 0.00 34.99 3.34
773 995 4.934001 GCAAGAACCAACTAAGTAGTACCC 59.066 45.833 0.00 0.00 34.99 3.69
774 996 5.511888 GCAAGAACCAACTAAGTAGTACCCA 60.512 44.000 0.00 0.00 34.99 4.51
775 997 6.527423 CAAGAACCAACTAAGTAGTACCCAA 58.473 40.000 0.00 0.00 34.99 4.12
776 998 6.947376 AGAACCAACTAAGTAGTACCCAAT 57.053 37.500 0.00 0.00 34.99 3.16
777 999 8.316214 CAAGAACCAACTAAGTAGTACCCAATA 58.684 37.037 0.00 0.00 34.99 1.90
778 1000 8.619683 AGAACCAACTAAGTAGTACCCAATAT 57.380 34.615 0.00 0.00 34.99 1.28
779 1001 9.054580 AGAACCAACTAAGTAGTACCCAATATT 57.945 33.333 0.00 0.00 34.99 1.28
780 1002 9.676861 GAACCAACTAAGTAGTACCCAATATTT 57.323 33.333 0.00 0.00 34.99 1.40
781 1003 9.457436 AACCAACTAAGTAGTACCCAATATTTG 57.543 33.333 0.00 0.00 34.99 2.32
782 1004 8.050930 ACCAACTAAGTAGTACCCAATATTTGG 58.949 37.037 4.02 4.02 42.34 3.28
783 1005 7.012989 CCAACTAAGTAGTACCCAATATTTGGC 59.987 40.741 5.48 0.00 41.78 4.52
784 1006 7.202972 ACTAAGTAGTACCCAATATTTGGCA 57.797 36.000 5.48 0.00 41.25 4.92
785 1007 7.812306 ACTAAGTAGTACCCAATATTTGGCAT 58.188 34.615 5.48 0.00 41.25 4.40
786 1008 7.719633 ACTAAGTAGTACCCAATATTTGGCATG 59.280 37.037 5.48 0.00 41.25 4.06
800 1022 2.975266 TGGCATGCCAATTTTTAGCAG 58.025 42.857 36.95 0.00 44.12 4.24
801 1023 1.667212 GGCATGCCAATTTTTAGCAGC 59.333 47.619 32.08 0.00 40.40 5.25
802 1024 2.348660 GCATGCCAATTTTTAGCAGCA 58.651 42.857 6.36 0.00 40.40 4.41
803 1025 2.743126 GCATGCCAATTTTTAGCAGCAA 59.257 40.909 6.36 0.00 40.40 3.91
804 1026 3.188873 GCATGCCAATTTTTAGCAGCAAA 59.811 39.130 6.36 0.00 40.40 3.68
805 1027 4.714851 CATGCCAATTTTTAGCAGCAAAC 58.285 39.130 0.00 0.00 40.40 2.93
806 1028 3.137533 TGCCAATTTTTAGCAGCAAACC 58.862 40.909 0.00 0.00 31.65 3.27
807 1029 3.137533 GCCAATTTTTAGCAGCAAACCA 58.862 40.909 0.00 0.00 0.00 3.67
808 1030 3.563390 GCCAATTTTTAGCAGCAAACCAA 59.437 39.130 0.00 0.00 0.00 3.67
809 1031 4.216042 GCCAATTTTTAGCAGCAAACCAAT 59.784 37.500 0.00 0.00 0.00 3.16
810 1032 5.278414 GCCAATTTTTAGCAGCAAACCAATT 60.278 36.000 0.00 0.00 0.00 2.32
811 1033 6.072783 GCCAATTTTTAGCAGCAAACCAATTA 60.073 34.615 0.00 0.00 0.00 1.40
812 1034 7.361971 GCCAATTTTTAGCAGCAAACCAATTAT 60.362 33.333 0.00 0.00 0.00 1.28
813 1035 7.964011 CCAATTTTTAGCAGCAAACCAATTATG 59.036 33.333 0.00 0.00 0.00 1.90
814 1036 6.479095 TTTTTAGCAGCAAACCAATTATGC 57.521 33.333 0.00 0.00 40.34 3.14
816 1038 3.515330 AGCAGCAAACCAATTATGCTC 57.485 42.857 0.00 0.00 46.98 4.26
824 1046 9.754382 CAGCAAACCAATTATGCTCTTTATTAT 57.246 29.630 0.00 0.00 46.98 1.28
863 1085 1.529865 GTTCACAGGGTGCGTCTAAAC 59.470 52.381 0.00 0.00 32.98 2.01
872 1094 2.092211 GGTGCGTCTAAACTCGAATGTG 59.908 50.000 0.00 0.00 0.00 3.21
877 1099 4.665897 GCGTCTAAACTCGAATGTGGAAAC 60.666 45.833 0.00 0.00 0.00 2.78
1260 1494 5.054390 TCGTTTCCTCCATGTAATTTTGC 57.946 39.130 0.00 0.00 0.00 3.68
1501 1735 4.210955 GCATCTCTGACAACTATGCTAAGC 59.789 45.833 0.00 0.00 39.80 3.09
1536 1770 7.603024 GGGTGTAGCTTACCATGTATCTAAATC 59.397 40.741 18.27 0.00 40.03 2.17
1560 1794 3.324846 AGGTTCTGTGCACATCTGAGTTA 59.675 43.478 22.00 0.00 0.00 2.24
1565 1799 5.550290 TCTGTGCACATCTGAGTTATTGAA 58.450 37.500 22.00 0.00 0.00 2.69
1573 1807 7.221838 GCACATCTGAGTTATTGAACTAGTCTC 59.778 40.741 0.00 0.00 46.23 3.36
1585 1819 4.769488 TGAACTAGTCTCTGTGAGCTGAAT 59.231 41.667 0.00 0.00 0.00 2.57
1586 1820 5.946377 TGAACTAGTCTCTGTGAGCTGAATA 59.054 40.000 0.00 0.00 0.00 1.75
1621 1856 4.586001 AGAATTGAGATTGTGCTTTGGTGT 59.414 37.500 0.00 0.00 0.00 4.16
1712 1947 0.981183 TTTTAGCGGAGGGAGCTGAA 59.019 50.000 0.00 0.00 45.60 3.02
1739 1974 9.715123 CATGCGATCATTATTTTAGTTGTGTAA 57.285 29.630 0.00 0.00 0.00 2.41
1945 2180 0.609662 GGTTGTAGTTGCTCCCCGTA 59.390 55.000 0.00 0.00 0.00 4.02
2022 2257 1.747709 AAGAGTCATGCCATGCTCAC 58.252 50.000 22.39 8.76 36.53 3.51
2048 2283 5.581126 TTTGTAAATAGCATGCCCTGAAG 57.419 39.130 15.66 0.00 0.00 3.02
2087 2323 2.488153 GTTATGTCAGCCACCAGGTTTC 59.512 50.000 0.00 0.00 37.19 2.78
2117 2353 9.962759 GTTTAGCTTGATAGATTTTTGCAAATG 57.037 29.630 13.65 0.00 32.35 2.32
2162 2398 2.681976 GCTCTTAGCCCAGATGCAAGAA 60.682 50.000 0.00 0.00 34.48 2.52
2188 2424 0.174389 GGCATCTCTTCGCAGACTCA 59.826 55.000 0.00 0.00 34.32 3.41
2193 2429 3.735237 TCTCTTCGCAGACTCAAGTTT 57.265 42.857 0.00 0.00 34.32 2.66
2194 2430 3.384668 TCTCTTCGCAGACTCAAGTTTG 58.615 45.455 0.00 0.00 34.32 2.93
2195 2431 3.068165 TCTCTTCGCAGACTCAAGTTTGA 59.932 43.478 4.97 0.00 34.32 2.69
2196 2432 3.792401 TCTTCGCAGACTCAAGTTTGAA 58.208 40.909 4.97 0.00 36.64 2.69
2197 2433 4.380531 TCTTCGCAGACTCAAGTTTGAAT 58.619 39.130 4.97 0.00 36.64 2.57
2198 2434 5.538118 TCTTCGCAGACTCAAGTTTGAATA 58.462 37.500 4.97 0.00 36.64 1.75
2199 2435 5.405571 TCTTCGCAGACTCAAGTTTGAATAC 59.594 40.000 4.97 0.00 36.64 1.89
2200 2436 4.883083 TCGCAGACTCAAGTTTGAATACT 58.117 39.130 4.97 0.00 36.64 2.12
2201 2437 4.686091 TCGCAGACTCAAGTTTGAATACTG 59.314 41.667 4.97 13.31 36.64 2.74
2202 2438 4.449068 CGCAGACTCAAGTTTGAATACTGT 59.551 41.667 4.97 4.78 36.64 3.55
2203 2439 5.613360 CGCAGACTCAAGTTTGAATACTGTG 60.613 44.000 4.97 15.60 36.64 3.66
2204 2440 5.237344 GCAGACTCAAGTTTGAATACTGTGT 59.763 40.000 4.97 3.76 36.64 3.72
2205 2441 6.653183 CAGACTCAAGTTTGAATACTGTGTG 58.347 40.000 0.00 0.00 36.64 3.82
2206 2442 5.237344 AGACTCAAGTTTGAATACTGTGTGC 59.763 40.000 0.00 0.00 36.64 4.57
2207 2443 4.024893 ACTCAAGTTTGAATACTGTGTGCG 60.025 41.667 0.00 0.00 36.64 5.34
2208 2444 3.249799 TCAAGTTTGAATACTGTGTGCGG 59.750 43.478 0.00 0.00 33.55 5.69
2209 2445 3.120321 AGTTTGAATACTGTGTGCGGA 57.880 42.857 0.00 0.00 0.00 5.54
2210 2446 3.472652 AGTTTGAATACTGTGTGCGGAA 58.527 40.909 0.00 0.00 0.00 4.30
2211 2447 3.250040 AGTTTGAATACTGTGTGCGGAAC 59.750 43.478 0.00 0.00 0.00 3.62
2212 2448 2.831685 TGAATACTGTGTGCGGAACT 57.168 45.000 0.00 0.00 0.00 3.01
2213 2449 2.412870 TGAATACTGTGTGCGGAACTG 58.587 47.619 0.00 0.00 0.00 3.16
2214 2450 2.036604 TGAATACTGTGTGCGGAACTGA 59.963 45.455 0.00 0.00 0.00 3.41
2215 2451 3.262420 GAATACTGTGTGCGGAACTGAT 58.738 45.455 0.00 0.00 0.00 2.90
2216 2452 2.363788 TACTGTGTGCGGAACTGATC 57.636 50.000 0.00 0.00 0.00 2.92
2217 2453 0.392706 ACTGTGTGCGGAACTGATCA 59.607 50.000 0.00 0.00 0.00 2.92
2218 2454 0.792640 CTGTGTGCGGAACTGATCAC 59.207 55.000 0.00 0.00 0.00 3.06
2219 2455 0.392706 TGTGTGCGGAACTGATCACT 59.607 50.000 0.00 0.00 0.00 3.41
2220 2456 1.071605 GTGTGCGGAACTGATCACTC 58.928 55.000 0.00 0.00 0.00 3.51
2221 2457 0.969149 TGTGCGGAACTGATCACTCT 59.031 50.000 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 22 3.629398 AGCAAAATTATGAGCCCTTCTCG 59.371 43.478 0.00 0.00 44.86 4.04
23 25 3.181472 CCCAGCAAAATTATGAGCCCTTC 60.181 47.826 0.00 0.00 0.00 3.46
33 35 6.824958 ATCTACCTACTCCCAGCAAAATTA 57.175 37.500 0.00 0.00 0.00 1.40
39 41 2.789992 ACCTATCTACCTACTCCCAGCA 59.210 50.000 0.00 0.00 0.00 4.41
66 70 3.118531 ACTCCCATGAAACCATAGAGCT 58.881 45.455 0.00 0.00 31.71 4.09
74 78 3.713826 TCACCTTACTCCCATGAAACC 57.286 47.619 0.00 0.00 0.00 3.27
87 91 5.646360 CGAAGCCTTTTTATCCTTCACCTTA 59.354 40.000 0.00 0.00 34.77 2.69
92 96 3.190535 GCACGAAGCCTTTTTATCCTTCA 59.809 43.478 0.00 0.00 34.77 3.02
118 122 1.419381 TGTAGTGACAAGGGCTCACA 58.581 50.000 7.27 0.00 40.56 3.58
210 215 3.396260 TCTTCCAGGTTGTTCGTAAGG 57.604 47.619 0.00 0.00 38.47 2.69
302 413 4.583489 TCAACTACATATTCGAGAGTCCCC 59.417 45.833 0.00 0.00 0.00 4.81
344 564 4.194720 CCCCGGCGAGTCTCTTCG 62.195 72.222 9.30 1.88 43.23 3.79
405 625 4.363999 GCTTCTGTTATCGTATCTGCACT 58.636 43.478 0.00 0.00 0.00 4.40
423 643 2.005451 TCTACAGTACGAGACGGCTTC 58.995 52.381 0.00 0.00 0.00 3.86
427 647 2.161012 TGCTTTCTACAGTACGAGACGG 59.839 50.000 0.00 0.00 0.00 4.79
429 649 3.172824 GCTGCTTTCTACAGTACGAGAC 58.827 50.000 0.00 0.00 37.47 3.36
430 650 2.163815 GGCTGCTTTCTACAGTACGAGA 59.836 50.000 0.00 0.00 37.47 4.04
432 652 2.163815 GAGGCTGCTTTCTACAGTACGA 59.836 50.000 0.00 0.00 37.47 3.43
434 654 2.233922 TGGAGGCTGCTTTCTACAGTAC 59.766 50.000 7.74 0.00 37.47 2.73
469 689 6.317893 GGAGTATTTGAGCTCGGGATTAAAAA 59.682 38.462 9.64 1.58 32.83 1.94
585 806 3.370840 TTTCCCAGACCTCCATGAATG 57.629 47.619 0.00 0.00 0.00 2.67
586 807 4.402616 TTTTTCCCAGACCTCCATGAAT 57.597 40.909 0.00 0.00 0.00 2.57
587 808 3.893753 TTTTTCCCAGACCTCCATGAA 57.106 42.857 0.00 0.00 0.00 2.57
645 867 9.533253 AATATTAGCAACAAACCAATTATGCTC 57.467 29.630 0.82 0.00 40.53 4.26
646 868 9.889128 AAATATTAGCAACAAACCAATTATGCT 57.111 25.926 3.42 3.42 42.61 3.79
647 869 9.919348 CAAATATTAGCAACAAACCAATTATGC 57.081 29.630 0.00 0.00 34.75 3.14
649 871 9.108284 GCCAAATATTAGCAACAAACCAATTAT 57.892 29.630 5.70 0.00 0.00 1.28
650 872 8.317679 AGCCAAATATTAGCAACAAACCAATTA 58.682 29.630 11.71 0.00 0.00 1.40
651 873 7.167535 AGCCAAATATTAGCAACAAACCAATT 58.832 30.769 11.71 0.00 0.00 2.32
652 874 6.710278 AGCCAAATATTAGCAACAAACCAAT 58.290 32.000 11.71 0.00 0.00 3.16
653 875 6.107901 AGCCAAATATTAGCAACAAACCAA 57.892 33.333 11.71 0.00 0.00 3.67
654 876 5.736951 AGCCAAATATTAGCAACAAACCA 57.263 34.783 11.71 0.00 0.00 3.67
655 877 5.163864 GCAAGCCAAATATTAGCAACAAACC 60.164 40.000 11.71 0.00 0.00 3.27
656 878 5.163864 GGCAAGCCAAATATTAGCAACAAAC 60.164 40.000 6.14 0.00 35.81 2.93
657 879 4.934602 GGCAAGCCAAATATTAGCAACAAA 59.065 37.500 6.14 0.00 35.81 2.83
658 880 4.020751 TGGCAAGCCAAATATTAGCAACAA 60.021 37.500 12.11 0.00 44.12 2.83
659 881 3.513119 TGGCAAGCCAAATATTAGCAACA 59.487 39.130 12.11 3.83 44.12 3.33
660 882 4.122143 TGGCAAGCCAAATATTAGCAAC 57.878 40.909 12.11 2.45 44.12 4.17
672 894 2.324541 AGTTTTGGTATTGGCAAGCCA 58.675 42.857 18.55 18.55 45.63 4.75
673 895 3.066380 CAAGTTTTGGTATTGGCAAGCC 58.934 45.455 14.44 14.44 0.00 4.35
674 896 2.480037 GCAAGTTTTGGTATTGGCAAGC 59.520 45.455 5.96 0.79 0.00 4.01
675 897 3.066380 GGCAAGTTTTGGTATTGGCAAG 58.934 45.455 5.96 0.00 45.75 4.01
676 898 3.118905 GGCAAGTTTTGGTATTGGCAA 57.881 42.857 0.68 0.68 45.75 4.52
677 899 2.829741 GGCAAGTTTTGGTATTGGCA 57.170 45.000 5.91 0.00 45.75 4.92
678 900 2.805671 GTTGGCAAGTTTTGGTATTGGC 59.194 45.455 0.00 4.00 46.40 4.52
679 901 4.335400 AGTTGGCAAGTTTTGGTATTGG 57.665 40.909 0.00 0.00 0.00 3.16
680 902 6.368516 CCAATAGTTGGCAAGTTTTGGTATTG 59.631 38.462 32.23 23.80 45.17 1.90
681 903 6.463360 CCAATAGTTGGCAAGTTTTGGTATT 58.537 36.000 32.23 16.70 45.17 1.89
682 904 6.036577 CCAATAGTTGGCAAGTTTTGGTAT 57.963 37.500 32.23 12.61 45.17 2.73
683 905 5.461032 CCAATAGTTGGCAAGTTTTGGTA 57.539 39.130 32.23 11.10 45.17 3.25
684 906 4.335400 CCAATAGTTGGCAAGTTTTGGT 57.665 40.909 32.23 8.70 45.17 3.67
703 925 5.559148 ATTGGCAAGTTTTGGTAATTCCA 57.441 34.783 5.96 0.00 45.60 3.53
704 926 8.450180 CAATAATTGGCAAGTTTTGGTAATTCC 58.550 33.333 18.75 0.00 0.00 3.01
705 927 8.450180 CCAATAATTGGCAAGTTTTGGTAATTC 58.550 33.333 29.46 0.00 45.17 2.17
706 928 8.334263 CCAATAATTGGCAAGTTTTGGTAATT 57.666 30.769 29.46 11.35 45.17 1.40
707 929 7.920160 CCAATAATTGGCAAGTTTTGGTAAT 57.080 32.000 29.46 6.42 45.17 1.89
725 947 8.359642 GCCTATCTCACATAAAATTGCCAATAA 58.640 33.333 0.00 0.00 0.00 1.40
726 948 7.505248 TGCCTATCTCACATAAAATTGCCAATA 59.495 33.333 0.00 0.00 0.00 1.90
727 949 6.324512 TGCCTATCTCACATAAAATTGCCAAT 59.675 34.615 0.00 0.00 0.00 3.16
728 950 5.655974 TGCCTATCTCACATAAAATTGCCAA 59.344 36.000 0.00 0.00 0.00 4.52
729 951 5.199723 TGCCTATCTCACATAAAATTGCCA 58.800 37.500 0.00 0.00 0.00 4.92
730 952 5.772825 TGCCTATCTCACATAAAATTGCC 57.227 39.130 0.00 0.00 0.00 4.52
731 953 7.031226 TCTTGCCTATCTCACATAAAATTGC 57.969 36.000 0.00 0.00 0.00 3.56
732 954 7.917505 GGTTCTTGCCTATCTCACATAAAATTG 59.082 37.037 0.00 0.00 0.00 2.32
733 955 7.615365 TGGTTCTTGCCTATCTCACATAAAATT 59.385 33.333 0.00 0.00 0.00 1.82
734 956 7.118723 TGGTTCTTGCCTATCTCACATAAAAT 58.881 34.615 0.00 0.00 0.00 1.82
735 957 6.480763 TGGTTCTTGCCTATCTCACATAAAA 58.519 36.000 0.00 0.00 0.00 1.52
736 958 6.061022 TGGTTCTTGCCTATCTCACATAAA 57.939 37.500 0.00 0.00 0.00 1.40
737 959 5.692115 TGGTTCTTGCCTATCTCACATAA 57.308 39.130 0.00 0.00 0.00 1.90
738 960 5.189736 AGTTGGTTCTTGCCTATCTCACATA 59.810 40.000 0.00 0.00 0.00 2.29
739 961 4.018960 AGTTGGTTCTTGCCTATCTCACAT 60.019 41.667 0.00 0.00 0.00 3.21
740 962 3.327757 AGTTGGTTCTTGCCTATCTCACA 59.672 43.478 0.00 0.00 0.00 3.58
741 963 3.944087 AGTTGGTTCTTGCCTATCTCAC 58.056 45.455 0.00 0.00 0.00 3.51
742 964 5.248477 ACTTAGTTGGTTCTTGCCTATCTCA 59.752 40.000 0.00 0.00 0.00 3.27
743 965 5.735766 ACTTAGTTGGTTCTTGCCTATCTC 58.264 41.667 0.00 0.00 0.00 2.75
744 966 5.763876 ACTTAGTTGGTTCTTGCCTATCT 57.236 39.130 0.00 0.00 0.00 1.98
745 967 6.641474 ACTACTTAGTTGGTTCTTGCCTATC 58.359 40.000 0.00 0.00 31.13 2.08
746 968 6.622427 ACTACTTAGTTGGTTCTTGCCTAT 57.378 37.500 0.00 0.00 31.13 2.57
747 969 6.071165 GGTACTACTTAGTTGGTTCTTGCCTA 60.071 42.308 0.00 0.00 37.73 3.93
748 970 4.976540 ACTACTTAGTTGGTTCTTGCCT 57.023 40.909 0.00 0.00 31.13 4.75
749 971 4.934001 GGTACTACTTAGTTGGTTCTTGCC 59.066 45.833 0.00 0.00 37.73 4.52
750 972 4.934001 GGGTACTACTTAGTTGGTTCTTGC 59.066 45.833 0.00 0.00 37.73 4.01
751 973 6.105397 TGGGTACTACTTAGTTGGTTCTTG 57.895 41.667 0.00 0.00 37.73 3.02
752 974 6.752285 TTGGGTACTACTTAGTTGGTTCTT 57.248 37.500 0.00 0.00 37.73 2.52
753 975 6.947376 ATTGGGTACTACTTAGTTGGTTCT 57.053 37.500 0.00 0.00 37.73 3.01
754 976 9.676861 AAATATTGGGTACTACTTAGTTGGTTC 57.323 33.333 0.00 0.00 37.73 3.62
755 977 9.457436 CAAATATTGGGTACTACTTAGTTGGTT 57.543 33.333 0.00 0.00 37.73 3.67
780 1002 2.936114 GCTGCTAAAAATTGGCATGCCA 60.936 45.455 35.59 35.59 46.27 4.92
781 1003 1.667212 GCTGCTAAAAATTGGCATGCC 59.333 47.619 30.54 30.54 46.27 4.40
782 1004 2.348660 TGCTGCTAAAAATTGGCATGC 58.651 42.857 9.90 9.90 46.27 4.06
783 1005 4.378666 GGTTTGCTGCTAAAAATTGGCATG 60.379 41.667 0.00 0.00 46.27 4.06
784 1006 3.752747 GGTTTGCTGCTAAAAATTGGCAT 59.247 39.130 0.00 0.00 46.27 4.40
785 1007 3.137533 GGTTTGCTGCTAAAAATTGGCA 58.862 40.909 0.00 1.23 45.27 4.92
786 1008 3.137533 TGGTTTGCTGCTAAAAATTGGC 58.862 40.909 0.00 0.00 37.69 4.52
787 1009 5.945466 ATTGGTTTGCTGCTAAAAATTGG 57.055 34.783 0.00 0.00 0.00 3.16
788 1010 7.482428 GCATAATTGGTTTGCTGCTAAAAATTG 59.518 33.333 19.27 11.37 33.61 2.32
789 1011 7.391275 AGCATAATTGGTTTGCTGCTAAAAATT 59.609 29.630 16.60 16.60 44.63 1.82
790 1012 6.880529 AGCATAATTGGTTTGCTGCTAAAAAT 59.119 30.769 0.00 1.09 44.63 1.82
791 1013 6.229733 AGCATAATTGGTTTGCTGCTAAAAA 58.770 32.000 0.00 0.00 44.63 1.94
792 1014 5.792741 AGCATAATTGGTTTGCTGCTAAAA 58.207 33.333 0.00 0.00 44.63 1.52
793 1015 5.185635 AGAGCATAATTGGTTTGCTGCTAAA 59.814 36.000 10.49 0.00 46.21 1.85
794 1016 4.706476 AGAGCATAATTGGTTTGCTGCTAA 59.294 37.500 10.49 0.00 46.21 3.09
795 1017 4.272489 AGAGCATAATTGGTTTGCTGCTA 58.728 39.130 10.49 0.00 46.21 3.49
796 1018 3.094572 AGAGCATAATTGGTTTGCTGCT 58.905 40.909 10.49 0.00 46.21 4.24
797 1019 3.515330 AGAGCATAATTGGTTTGCTGC 57.485 42.857 10.49 0.00 46.21 5.25
798 1020 9.754382 ATAATAAAGAGCATAATTGGTTTGCTG 57.246 29.630 10.49 0.00 46.21 4.41
837 1059 1.071699 ACGCACCCTGTGAACAGTAAT 59.928 47.619 9.49 0.00 42.27 1.89
839 1061 0.032952 GACGCACCCTGTGAACAGTA 59.967 55.000 9.49 0.00 42.27 2.74
840 1062 1.227556 GACGCACCCTGTGAACAGT 60.228 57.895 9.49 0.00 42.27 3.55
841 1063 0.317160 TAGACGCACCCTGTGAACAG 59.683 55.000 3.35 3.35 43.40 3.16
856 1078 5.120363 GGAGTTTCCACATTCGAGTTTAGAC 59.880 44.000 0.00 0.00 36.28 2.59
872 1094 3.140814 GCGGGCCATGGAGTTTCC 61.141 66.667 18.40 6.33 36.96 3.13
1107 1333 1.627297 GGATCTTCTCGGGCCTGGTT 61.627 60.000 12.87 0.00 0.00 3.67
1260 1494 0.095935 CAATTTCGACGGAGCAGCAG 59.904 55.000 0.00 0.00 0.00 4.24
1501 1735 3.368531 GGTAAGCTACACCCTCTCACTTG 60.369 52.174 6.20 0.00 0.00 3.16
1536 1770 1.073964 CAGATGTGCACAGAACCTCG 58.926 55.000 25.84 9.67 0.00 4.63
1560 1794 4.769488 TCAGCTCACAGAGACTAGTTCAAT 59.231 41.667 0.00 0.00 0.00 2.57
1565 1799 5.750524 TCTATTCAGCTCACAGAGACTAGT 58.249 41.667 0.00 0.00 0.00 2.57
1573 1807 6.592994 TCAAGTTGATTCTATTCAGCTCACAG 59.407 38.462 0.08 0.00 36.33 3.66
1585 1819 9.730705 ACAATCTCAATTCTCAAGTTGATTCTA 57.269 29.630 5.91 0.00 34.18 2.10
1586 1820 8.512956 CACAATCTCAATTCTCAAGTTGATTCT 58.487 33.333 5.91 0.00 34.18 2.40
1621 1856 1.801771 CCGTATTCTGACCGCACAAAA 59.198 47.619 0.00 0.00 0.00 2.44
1712 1947 7.761409 ACACAACTAAAATAATGATCGCATGT 58.239 30.769 0.00 0.00 34.26 3.21
1739 1974 0.904865 TCTCTCCAACGCTGGGATGT 60.905 55.000 4.74 0.00 43.71 3.06
2022 2257 5.300034 TCAGGGCATGCTATTTACAAATGAG 59.700 40.000 18.92 0.00 0.00 2.90
2048 2283 6.608610 ACATAACAAGCATAAAACGGAGAAC 58.391 36.000 0.00 0.00 0.00 3.01
2087 2323 7.325821 TGCAAAAATCTATCAAGCTAAACAACG 59.674 33.333 0.00 0.00 0.00 4.10
2117 2353 4.418392 CATCCACTGCAACATTTTAGAGC 58.582 43.478 0.00 0.00 0.00 4.09
2162 2398 2.125512 GAAGAGATGCCACCGCGT 60.126 61.111 4.92 0.00 38.08 6.01
2188 2424 3.472652 TCCGCACACAGTATTCAAACTT 58.527 40.909 0.00 0.00 0.00 2.66
2193 2429 2.036604 TCAGTTCCGCACACAGTATTCA 59.963 45.455 0.00 0.00 0.00 2.57
2194 2430 2.683968 TCAGTTCCGCACACAGTATTC 58.316 47.619 0.00 0.00 0.00 1.75
2195 2431 2.831685 TCAGTTCCGCACACAGTATT 57.168 45.000 0.00 0.00 0.00 1.89
2196 2432 2.233676 TGATCAGTTCCGCACACAGTAT 59.766 45.455 0.00 0.00 0.00 2.12
2197 2433 1.616374 TGATCAGTTCCGCACACAGTA 59.384 47.619 0.00 0.00 0.00 2.74
2198 2434 0.392706 TGATCAGTTCCGCACACAGT 59.607 50.000 0.00 0.00 0.00 3.55
2199 2435 0.792640 GTGATCAGTTCCGCACACAG 59.207 55.000 0.00 0.00 0.00 3.66
2200 2436 0.392706 AGTGATCAGTTCCGCACACA 59.607 50.000 0.00 0.00 33.85 3.72
2201 2437 1.071605 GAGTGATCAGTTCCGCACAC 58.928 55.000 4.13 0.00 33.85 3.82
2202 2438 0.969149 AGAGTGATCAGTTCCGCACA 59.031 50.000 4.13 0.00 33.85 4.57
2203 2439 3.822607 AGAGTGATCAGTTCCGCAC 57.177 52.632 4.13 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.