Multiple sequence alignment - TraesCS5D01G139200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G139200 chr5D 100.000 5867 0 0 482 6348 221586898 221592764 0.000000e+00 10835.0
1 TraesCS5D01G139200 chr5D 100.000 158 0 0 1 158 221586417 221586574 6.220000e-75 292.0
2 TraesCS5D01G139200 chr5A 93.134 4078 178 52 2212 6249 302308304 302304289 0.000000e+00 5886.0
3 TraesCS5D01G139200 chr5A 97.636 1396 29 2 753 2147 302309910 302308518 0.000000e+00 2392.0
4 TraesCS5D01G139200 chr5A 95.312 128 5 1 5 132 302331246 302331120 1.080000e-47 202.0
5 TraesCS5D01G139200 chr5A 94.175 103 6 0 6246 6348 302303622 302303520 2.370000e-34 158.0
6 TraesCS5D01G139200 chr5A 97.101 69 2 0 2145 2213 302308437 302308369 4.020000e-22 117.0
7 TraesCS5D01G139200 chr5A 89.474 57 2 1 698 754 302310287 302310235 1.140000e-07 69.4
8 TraesCS5D01G139200 chr5B 91.514 1744 86 31 2293 4016 244118144 244119845 0.000000e+00 2344.0
9 TraesCS5D01G139200 chr5B 96.920 1331 25 6 890 2213 244116554 244117875 0.000000e+00 2217.0
10 TraesCS5D01G139200 chr5B 96.703 1183 30 5 4449 5623 244120082 244121263 0.000000e+00 1960.0
11 TraesCS5D01G139200 chr5B 86.837 471 31 20 5904 6345 244121727 244122195 1.230000e-136 497.0
12 TraesCS5D01G139200 chr5B 96.124 129 2 1 5690 5818 244121277 244121402 2.320000e-49 207.0
13 TraesCS5D01G139200 chr5B 98.734 79 1 0 2212 2290 244117940 244118018 2.390000e-29 141.0
14 TraesCS5D01G139200 chr5B 91.579 95 7 1 5815 5908 244121482 244121576 5.160000e-26 130.0
15 TraesCS5D01G139200 chr1D 100.000 35 0 0 2418 2452 469464656 469464690 1.480000e-06 65.8
16 TraesCS5D01G139200 chr1D 100.000 32 0 0 2420 2451 456276458 456276489 6.870000e-05 60.2
17 TraesCS5D01G139200 chr6D 93.023 43 3 0 2409 2451 208623256 208623298 5.310000e-06 63.9
18 TraesCS5D01G139200 chr2A 100.000 34 0 0 2418 2451 132191895 132191928 5.310000e-06 63.9
19 TraesCS5D01G139200 chr1A 97.297 37 1 0 2416 2452 131960773 131960737 5.310000e-06 63.9
20 TraesCS5D01G139200 chr1A 100.000 32 0 0 2420 2451 333907779 333907748 6.870000e-05 60.2
21 TraesCS5D01G139200 chr6B 100.000 33 0 0 2419 2451 555292299 555292267 1.910000e-05 62.1
22 TraesCS5D01G139200 chr4B 100.000 32 0 0 2420 2451 601535217 601535248 6.870000e-05 60.2
23 TraesCS5D01G139200 chr3D 97.059 34 1 0 2418 2451 606723796 606723829 2.470000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G139200 chr5D 221586417 221592764 6347 False 5563.500000 10835 100.000000 1 6348 2 chr5D.!!$F1 6347
1 TraesCS5D01G139200 chr5A 302303520 302310287 6767 True 1724.480000 5886 94.304000 698 6348 5 chr5A.!!$R2 5650
2 TraesCS5D01G139200 chr5B 244116554 244122195 5641 False 1070.857143 2344 94.058714 890 6345 7 chr5B.!!$F1 5455

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
52 53 0.031616 ATTCTCTCCCCTCCGCTTCT 60.032 55.0 0.00 0.0 0.00 2.85 F
693 694 0.032952 AGCGTACGCCAAGAGACAAA 59.967 50.0 34.88 0.0 43.17 2.83 F
1617 1945 0.753262 ACCTCAGCGCCGAGATATTT 59.247 50.0 22.14 0.0 34.79 1.40 F
2624 3234 0.321653 ACAATCCGTCCTGGCTGTTC 60.322 55.0 0.00 0.0 37.80 3.18 F
3755 4382 0.240945 ACTACCGCAAAGTGCAATGC 59.759 50.0 0.00 0.0 45.36 3.56 F
4022 4654 0.894835 TCTGCAAGGTCACGCTATCA 59.105 50.0 0.00 0.0 0.00 2.15 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1721 2049 0.463295 CATGCCATTCGCTGTCTCCT 60.463 55.000 0.00 0.0 38.78 3.69 R
2422 3031 1.074889 TCCTACAAACCAAAGGAGGCC 59.925 52.381 0.00 0.0 34.46 5.19 R
3202 3815 2.549992 GCCAGTGTCAGTGTGGTATTCA 60.550 50.000 6.91 0.0 33.51 2.57 R
4276 4915 1.723220 CTGATGCCTGACAGTGAGTG 58.277 55.000 0.00 0.0 0.00 3.51 R
4990 5749 2.815503 CACATCAGCAACAAGATCACCA 59.184 45.455 0.00 0.0 0.00 4.17 R
5967 6988 1.555075 AGCAACCATCGGCTTCTTCTA 59.445 47.619 0.00 0.0 36.92 2.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 5.893897 ATCTTCTTCTTCATGACCTTTGC 57.106 39.130 0.00 0.00 0.00 3.68
26 27 4.978099 TCTTCTTCTTCATGACCTTTGCT 58.022 39.130 0.00 0.00 0.00 3.91
27 28 4.999950 TCTTCTTCTTCATGACCTTTGCTC 59.000 41.667 0.00 0.00 0.00 4.26
28 29 3.679389 TCTTCTTCATGACCTTTGCTCC 58.321 45.455 0.00 0.00 0.00 4.70
29 30 2.496899 TCTTCATGACCTTTGCTCCC 57.503 50.000 0.00 0.00 0.00 4.30
30 31 1.704628 TCTTCATGACCTTTGCTCCCA 59.295 47.619 0.00 0.00 0.00 4.37
31 32 2.089980 CTTCATGACCTTTGCTCCCAG 58.910 52.381 0.00 0.00 0.00 4.45
32 33 1.067295 TCATGACCTTTGCTCCCAGT 58.933 50.000 0.00 0.00 0.00 4.00
33 34 2.265367 TCATGACCTTTGCTCCCAGTA 58.735 47.619 0.00 0.00 0.00 2.74
34 35 2.846206 TCATGACCTTTGCTCCCAGTAT 59.154 45.455 0.00 0.00 0.00 2.12
35 36 3.266772 TCATGACCTTTGCTCCCAGTATT 59.733 43.478 0.00 0.00 0.00 1.89
36 37 3.350219 TGACCTTTGCTCCCAGTATTC 57.650 47.619 0.00 0.00 0.00 1.75
37 38 2.912956 TGACCTTTGCTCCCAGTATTCT 59.087 45.455 0.00 0.00 0.00 2.40
38 39 3.055094 TGACCTTTGCTCCCAGTATTCTC 60.055 47.826 0.00 0.00 0.00 2.87
39 40 3.185455 ACCTTTGCTCCCAGTATTCTCT 58.815 45.455 0.00 0.00 0.00 3.10
40 41 3.198853 ACCTTTGCTCCCAGTATTCTCTC 59.801 47.826 0.00 0.00 0.00 3.20
41 42 3.432890 CCTTTGCTCCCAGTATTCTCTCC 60.433 52.174 0.00 0.00 0.00 3.71
42 43 1.794714 TGCTCCCAGTATTCTCTCCC 58.205 55.000 0.00 0.00 0.00 4.30
43 44 1.052617 GCTCCCAGTATTCTCTCCCC 58.947 60.000 0.00 0.00 0.00 4.81
44 45 1.413808 GCTCCCAGTATTCTCTCCCCT 60.414 57.143 0.00 0.00 0.00 4.79
45 46 2.604139 CTCCCAGTATTCTCTCCCCTC 58.396 57.143 0.00 0.00 0.00 4.30
46 47 1.220750 TCCCAGTATTCTCTCCCCTCC 59.779 57.143 0.00 0.00 0.00 4.30
47 48 1.333177 CCAGTATTCTCTCCCCTCCG 58.667 60.000 0.00 0.00 0.00 4.63
48 49 0.676736 CAGTATTCTCTCCCCTCCGC 59.323 60.000 0.00 0.00 0.00 5.54
49 50 0.558712 AGTATTCTCTCCCCTCCGCT 59.441 55.000 0.00 0.00 0.00 5.52
50 51 1.062810 AGTATTCTCTCCCCTCCGCTT 60.063 52.381 0.00 0.00 0.00 4.68
51 52 1.341852 GTATTCTCTCCCCTCCGCTTC 59.658 57.143 0.00 0.00 0.00 3.86
52 53 0.031616 ATTCTCTCCCCTCCGCTTCT 60.032 55.000 0.00 0.00 0.00 2.85
53 54 0.972983 TTCTCTCCCCTCCGCTTCTG 60.973 60.000 0.00 0.00 0.00 3.02
54 55 2.364317 TCTCCCCTCCGCTTCTGG 60.364 66.667 0.00 0.00 0.00 3.86
55 56 4.168291 CTCCCCTCCGCTTCTGGC 62.168 72.222 0.00 0.00 37.64 4.85
57 58 3.801997 CCCCTCCGCTTCTGGCAT 61.802 66.667 0.00 0.00 41.91 4.40
58 59 2.203126 CCCTCCGCTTCTGGCATC 60.203 66.667 0.00 0.00 41.91 3.91
59 60 2.203126 CCTCCGCTTCTGGCATCC 60.203 66.667 0.00 0.00 41.91 3.51
60 61 2.203126 CTCCGCTTCTGGCATCCC 60.203 66.667 0.00 0.00 41.91 3.85
61 62 3.764160 CTCCGCTTCTGGCATCCCC 62.764 68.421 0.00 0.00 41.91 4.81
62 63 3.801997 CCGCTTCTGGCATCCCCT 61.802 66.667 0.00 0.00 41.91 4.79
63 64 2.203126 CGCTTCTGGCATCCCCTC 60.203 66.667 0.00 0.00 41.91 4.30
64 65 2.194326 GCTTCTGGCATCCCCTCC 59.806 66.667 0.00 0.00 41.35 4.30
65 66 2.381941 GCTTCTGGCATCCCCTCCT 61.382 63.158 0.00 0.00 41.35 3.69
66 67 1.931007 GCTTCTGGCATCCCCTCCTT 61.931 60.000 0.00 0.00 41.35 3.36
67 68 0.182299 CTTCTGGCATCCCCTCCTTC 59.818 60.000 0.00 0.00 0.00 3.46
68 69 1.281925 TTCTGGCATCCCCTCCTTCC 61.282 60.000 0.00 0.00 0.00 3.46
69 70 2.696125 TGGCATCCCCTCCTTCCC 60.696 66.667 0.00 0.00 0.00 3.97
70 71 2.696125 GGCATCCCCTCCTTCCCA 60.696 66.667 0.00 0.00 0.00 4.37
71 72 2.761465 GGCATCCCCTCCTTCCCAG 61.761 68.421 0.00 0.00 0.00 4.45
72 73 2.922234 CATCCCCTCCTTCCCAGC 59.078 66.667 0.00 0.00 0.00 4.85
73 74 1.695597 CATCCCCTCCTTCCCAGCT 60.696 63.158 0.00 0.00 0.00 4.24
74 75 1.695597 ATCCCCTCCTTCCCAGCTG 60.696 63.158 6.78 6.78 0.00 4.24
75 76 4.120755 CCCCTCCTTCCCAGCTGC 62.121 72.222 8.66 0.00 0.00 5.25
76 77 4.120755 CCCTCCTTCCCAGCTGCC 62.121 72.222 8.66 0.00 0.00 4.85
77 78 4.479993 CCTCCTTCCCAGCTGCCG 62.480 72.222 8.66 0.00 0.00 5.69
93 94 4.918201 CGCCGCTTCCCTCCCATC 62.918 72.222 0.00 0.00 0.00 3.51
94 95 3.797353 GCCGCTTCCCTCCCATCA 61.797 66.667 0.00 0.00 0.00 3.07
95 96 3.125376 GCCGCTTCCCTCCCATCAT 62.125 63.158 0.00 0.00 0.00 2.45
96 97 1.072159 CCGCTTCCCTCCCATCATC 59.928 63.158 0.00 0.00 0.00 2.92
97 98 1.414061 CCGCTTCCCTCCCATCATCT 61.414 60.000 0.00 0.00 0.00 2.90
98 99 0.034616 CGCTTCCCTCCCATCATCTC 59.965 60.000 0.00 0.00 0.00 2.75
99 100 0.399833 GCTTCCCTCCCATCATCTCC 59.600 60.000 0.00 0.00 0.00 3.71
100 101 1.063183 CTTCCCTCCCATCATCTCCC 58.937 60.000 0.00 0.00 0.00 4.30
101 102 0.649992 TTCCCTCCCATCATCTCCCT 59.350 55.000 0.00 0.00 0.00 4.20
102 103 0.649992 TCCCTCCCATCATCTCCCTT 59.350 55.000 0.00 0.00 0.00 3.95
103 104 1.063183 CCCTCCCATCATCTCCCTTC 58.937 60.000 0.00 0.00 0.00 3.46
104 105 1.415716 CCCTCCCATCATCTCCCTTCT 60.416 57.143 0.00 0.00 0.00 2.85
105 106 2.416638 CCTCCCATCATCTCCCTTCTT 58.583 52.381 0.00 0.00 0.00 2.52
106 107 3.591789 CCTCCCATCATCTCCCTTCTTA 58.408 50.000 0.00 0.00 0.00 2.10
107 108 3.326297 CCTCCCATCATCTCCCTTCTTAC 59.674 52.174 0.00 0.00 0.00 2.34
108 109 3.318313 TCCCATCATCTCCCTTCTTACC 58.682 50.000 0.00 0.00 0.00 2.85
109 110 3.051032 TCCCATCATCTCCCTTCTTACCT 60.051 47.826 0.00 0.00 0.00 3.08
110 111 4.172041 TCCCATCATCTCCCTTCTTACCTA 59.828 45.833 0.00 0.00 0.00 3.08
111 112 4.907875 CCCATCATCTCCCTTCTTACCTAA 59.092 45.833 0.00 0.00 0.00 2.69
112 113 5.549619 CCCATCATCTCCCTTCTTACCTAAT 59.450 44.000 0.00 0.00 0.00 1.73
113 114 6.296145 CCCATCATCTCCCTTCTTACCTAATC 60.296 46.154 0.00 0.00 0.00 1.75
114 115 6.296145 CCATCATCTCCCTTCTTACCTAATCC 60.296 46.154 0.00 0.00 0.00 3.01
115 116 5.788430 TCATCTCCCTTCTTACCTAATCCA 58.212 41.667 0.00 0.00 0.00 3.41
116 117 5.602978 TCATCTCCCTTCTTACCTAATCCAC 59.397 44.000 0.00 0.00 0.00 4.02
117 118 4.296056 TCTCCCTTCTTACCTAATCCACC 58.704 47.826 0.00 0.00 0.00 4.61
118 119 3.390819 TCCCTTCTTACCTAATCCACCC 58.609 50.000 0.00 0.00 0.00 4.61
119 120 2.104281 CCCTTCTTACCTAATCCACCCG 59.896 54.545 0.00 0.00 0.00 5.28
120 121 2.484947 CCTTCTTACCTAATCCACCCGC 60.485 54.545 0.00 0.00 0.00 6.13
121 122 2.170012 TCTTACCTAATCCACCCGCT 57.830 50.000 0.00 0.00 0.00 5.52
122 123 3.317455 TCTTACCTAATCCACCCGCTA 57.683 47.619 0.00 0.00 0.00 4.26
123 124 2.961062 TCTTACCTAATCCACCCGCTAC 59.039 50.000 0.00 0.00 0.00 3.58
124 125 2.761786 TACCTAATCCACCCGCTACT 57.238 50.000 0.00 0.00 0.00 2.57
125 126 1.875488 ACCTAATCCACCCGCTACTT 58.125 50.000 0.00 0.00 0.00 2.24
126 127 1.761198 ACCTAATCCACCCGCTACTTC 59.239 52.381 0.00 0.00 0.00 3.01
127 128 1.760613 CCTAATCCACCCGCTACTTCA 59.239 52.381 0.00 0.00 0.00 3.02
128 129 2.483188 CCTAATCCACCCGCTACTTCAC 60.483 54.545 0.00 0.00 0.00 3.18
129 130 0.252197 AATCCACCCGCTACTTCACC 59.748 55.000 0.00 0.00 0.00 4.02
130 131 0.617820 ATCCACCCGCTACTTCACCT 60.618 55.000 0.00 0.00 0.00 4.00
131 132 0.834687 TCCACCCGCTACTTCACCTT 60.835 55.000 0.00 0.00 0.00 3.50
132 133 0.391263 CCACCCGCTACTTCACCTTC 60.391 60.000 0.00 0.00 0.00 3.46
133 134 0.608640 CACCCGCTACTTCACCTTCT 59.391 55.000 0.00 0.00 0.00 2.85
134 135 0.896226 ACCCGCTACTTCACCTTCTC 59.104 55.000 0.00 0.00 0.00 2.87
135 136 0.175989 CCCGCTACTTCACCTTCTCC 59.824 60.000 0.00 0.00 0.00 3.71
136 137 0.179134 CCGCTACTTCACCTTCTCCG 60.179 60.000 0.00 0.00 0.00 4.63
137 138 0.526662 CGCTACTTCACCTTCTCCGT 59.473 55.000 0.00 0.00 0.00 4.69
138 139 1.741706 CGCTACTTCACCTTCTCCGTA 59.258 52.381 0.00 0.00 0.00 4.02
139 140 2.163010 CGCTACTTCACCTTCTCCGTAA 59.837 50.000 0.00 0.00 0.00 3.18
140 141 3.509740 GCTACTTCACCTTCTCCGTAAC 58.490 50.000 0.00 0.00 0.00 2.50
141 142 3.675502 GCTACTTCACCTTCTCCGTAACC 60.676 52.174 0.00 0.00 0.00 2.85
142 143 2.606378 ACTTCACCTTCTCCGTAACCT 58.394 47.619 0.00 0.00 0.00 3.50
143 144 2.561858 ACTTCACCTTCTCCGTAACCTC 59.438 50.000 0.00 0.00 0.00 3.85
144 145 1.553706 TCACCTTCTCCGTAACCTCC 58.446 55.000 0.00 0.00 0.00 4.30
145 146 1.076677 TCACCTTCTCCGTAACCTCCT 59.923 52.381 0.00 0.00 0.00 3.69
146 147 1.900486 CACCTTCTCCGTAACCTCCTT 59.100 52.381 0.00 0.00 0.00 3.36
147 148 1.900486 ACCTTCTCCGTAACCTCCTTG 59.100 52.381 0.00 0.00 0.00 3.61
148 149 1.405661 CCTTCTCCGTAACCTCCTTGC 60.406 57.143 0.00 0.00 0.00 4.01
149 150 0.611714 TTCTCCGTAACCTCCTTGCC 59.388 55.000 0.00 0.00 0.00 4.52
150 151 1.153628 CTCCGTAACCTCCTTGCCG 60.154 63.158 0.00 0.00 0.00 5.69
151 152 2.818274 CCGTAACCTCCTTGCCGC 60.818 66.667 0.00 0.00 0.00 6.53
152 153 2.818274 CGTAACCTCCTTGCCGCC 60.818 66.667 0.00 0.00 0.00 6.13
153 154 2.818274 GTAACCTCCTTGCCGCCG 60.818 66.667 0.00 0.00 0.00 6.46
154 155 4.770874 TAACCTCCTTGCCGCCGC 62.771 66.667 0.00 0.00 0.00 6.53
500 501 2.178912 GGACGTGAGGATTTTGTGGA 57.821 50.000 0.00 0.00 0.00 4.02
501 502 1.804748 GGACGTGAGGATTTTGTGGAC 59.195 52.381 0.00 0.00 0.00 4.02
502 503 2.550208 GGACGTGAGGATTTTGTGGACT 60.550 50.000 0.00 0.00 0.00 3.85
503 504 2.737252 GACGTGAGGATTTTGTGGACTC 59.263 50.000 0.00 0.00 0.00 3.36
504 505 2.076863 CGTGAGGATTTTGTGGACTCC 58.923 52.381 0.00 0.00 0.00 3.85
505 506 2.076863 GTGAGGATTTTGTGGACTCCG 58.923 52.381 0.00 0.00 32.87 4.63
506 507 1.003118 TGAGGATTTTGTGGACTCCGG 59.997 52.381 0.00 0.00 32.87 5.14
507 508 0.322546 AGGATTTTGTGGACTCCGGC 60.323 55.000 0.00 0.00 32.87 6.13
508 509 1.644786 GGATTTTGTGGACTCCGGCG 61.645 60.000 0.00 0.00 0.00 6.46
509 510 0.672401 GATTTTGTGGACTCCGGCGA 60.672 55.000 9.30 0.00 0.00 5.54
510 511 0.250553 ATTTTGTGGACTCCGGCGAA 60.251 50.000 9.30 0.00 0.00 4.70
511 512 0.464013 TTTTGTGGACTCCGGCGAAA 60.464 50.000 9.30 0.00 0.00 3.46
512 513 0.464013 TTTGTGGACTCCGGCGAAAA 60.464 50.000 9.30 0.00 0.00 2.29
513 514 0.250553 TTGTGGACTCCGGCGAAAAT 60.251 50.000 9.30 0.00 0.00 1.82
514 515 0.672401 TGTGGACTCCGGCGAAAATC 60.672 55.000 9.30 0.00 0.00 2.17
515 516 1.447140 TGGACTCCGGCGAAAATCG 60.447 57.895 9.30 0.00 43.89 3.34
524 525 4.438346 CGAAAATCGCCCGAGGAT 57.562 55.556 0.00 0.00 31.14 3.24
525 526 3.580904 CGAAAATCGCCCGAGGATA 57.419 52.632 0.00 0.00 31.14 2.59
526 527 1.419374 CGAAAATCGCCCGAGGATAG 58.581 55.000 0.00 0.00 31.14 2.08
527 528 1.797025 GAAAATCGCCCGAGGATAGG 58.203 55.000 0.00 0.00 0.00 2.57
548 549 3.887352 GGAAACCCTAGAAAGCTAAGGG 58.113 50.000 17.55 17.55 39.25 3.95
549 550 3.522343 GGAAACCCTAGAAAGCTAAGGGA 59.478 47.826 23.31 0.00 37.94 4.20
550 551 4.018688 GGAAACCCTAGAAAGCTAAGGGAA 60.019 45.833 23.31 0.00 37.94 3.97
551 552 5.516062 GGAAACCCTAGAAAGCTAAGGGAAA 60.516 44.000 23.31 0.00 37.94 3.13
552 553 5.594199 AACCCTAGAAAGCTAAGGGAAAA 57.406 39.130 23.31 0.00 37.94 2.29
553 554 5.594199 ACCCTAGAAAGCTAAGGGAAAAA 57.406 39.130 23.31 0.00 37.94 1.94
595 596 2.294074 TGGAACACACACTGGTTTAGC 58.706 47.619 0.00 0.00 0.00 3.09
596 597 2.092646 TGGAACACACACTGGTTTAGCT 60.093 45.455 0.00 0.00 0.00 3.32
597 598 2.548480 GGAACACACACTGGTTTAGCTC 59.452 50.000 0.00 0.00 0.00 4.09
598 599 3.467803 GAACACACACTGGTTTAGCTCT 58.532 45.455 0.00 0.00 0.00 4.09
599 600 4.502604 GGAACACACACTGGTTTAGCTCTA 60.503 45.833 0.00 0.00 0.00 2.43
600 601 3.991367 ACACACACTGGTTTAGCTCTAC 58.009 45.455 0.00 0.00 0.00 2.59
601 602 3.244112 ACACACACTGGTTTAGCTCTACC 60.244 47.826 9.65 9.65 34.93 3.18
602 603 2.969950 ACACACTGGTTTAGCTCTACCA 59.030 45.455 16.52 16.52 41.97 3.25
603 604 3.244112 ACACACTGGTTTAGCTCTACCAC 60.244 47.826 14.18 0.00 39.44 4.16
604 605 2.302157 ACACTGGTTTAGCTCTACCACC 59.698 50.000 14.18 4.64 39.44 4.61
605 606 2.301870 CACTGGTTTAGCTCTACCACCA 59.698 50.000 14.18 8.51 39.44 4.17
606 607 2.976882 ACTGGTTTAGCTCTACCACCAA 59.023 45.455 14.18 0.00 39.44 3.67
607 608 3.393278 ACTGGTTTAGCTCTACCACCAAA 59.607 43.478 14.18 0.00 39.44 3.28
608 609 4.003648 CTGGTTTAGCTCTACCACCAAAG 58.996 47.826 14.18 3.23 39.44 2.77
609 610 3.649023 TGGTTTAGCTCTACCACCAAAGA 59.351 43.478 14.18 0.00 39.44 2.52
610 611 4.288626 TGGTTTAGCTCTACCACCAAAGAT 59.711 41.667 14.18 0.00 39.44 2.40
611 612 5.222048 TGGTTTAGCTCTACCACCAAAGATT 60.222 40.000 14.18 0.00 39.44 2.40
612 613 6.013206 TGGTTTAGCTCTACCACCAAAGATTA 60.013 38.462 14.18 0.00 39.44 1.75
613 614 7.054751 GGTTTAGCTCTACCACCAAAGATTAT 58.945 38.462 11.31 0.00 34.48 1.28
614 615 7.012421 GGTTTAGCTCTACCACCAAAGATTATG 59.988 40.741 11.31 0.00 34.48 1.90
615 616 5.957771 AGCTCTACCACCAAAGATTATGA 57.042 39.130 0.00 0.00 0.00 2.15
616 617 6.313519 AGCTCTACCACCAAAGATTATGAA 57.686 37.500 0.00 0.00 0.00 2.57
617 618 6.352516 AGCTCTACCACCAAAGATTATGAAG 58.647 40.000 0.00 0.00 0.00 3.02
618 619 5.529060 GCTCTACCACCAAAGATTATGAAGG 59.471 44.000 0.00 0.00 0.00 3.46
619 620 6.632672 GCTCTACCACCAAAGATTATGAAGGA 60.633 42.308 0.00 0.00 0.00 3.36
620 621 7.265599 TCTACCACCAAAGATTATGAAGGAA 57.734 36.000 0.00 0.00 0.00 3.36
621 622 7.872138 TCTACCACCAAAGATTATGAAGGAAT 58.128 34.615 0.00 0.00 0.00 3.01
622 623 6.780457 ACCACCAAAGATTATGAAGGAATG 57.220 37.500 0.00 0.00 0.00 2.67
623 624 6.493166 ACCACCAAAGATTATGAAGGAATGA 58.507 36.000 0.00 0.00 0.00 2.57
624 625 6.953520 ACCACCAAAGATTATGAAGGAATGAA 59.046 34.615 0.00 0.00 0.00 2.57
625 626 7.454380 ACCACCAAAGATTATGAAGGAATGAAA 59.546 33.333 0.00 0.00 0.00 2.69
626 627 7.761249 CCACCAAAGATTATGAAGGAATGAAAC 59.239 37.037 0.00 0.00 0.00 2.78
627 628 8.306038 CACCAAAGATTATGAAGGAATGAAACA 58.694 33.333 0.00 0.00 0.00 2.83
628 629 8.869109 ACCAAAGATTATGAAGGAATGAAACAA 58.131 29.630 0.00 0.00 0.00 2.83
629 630 9.143631 CCAAAGATTATGAAGGAATGAAACAAC 57.856 33.333 0.00 0.00 0.00 3.32
630 631 8.853345 CAAAGATTATGAAGGAATGAAACAACG 58.147 33.333 0.00 0.00 0.00 4.10
631 632 7.921786 AGATTATGAAGGAATGAAACAACGA 57.078 32.000 0.00 0.00 0.00 3.85
632 633 8.335532 AGATTATGAAGGAATGAAACAACGAA 57.664 30.769 0.00 0.00 0.00 3.85
633 634 8.237267 AGATTATGAAGGAATGAAACAACGAAC 58.763 33.333 0.00 0.00 0.00 3.95
634 635 5.766150 ATGAAGGAATGAAACAACGAACA 57.234 34.783 0.00 0.00 0.00 3.18
635 636 5.568685 TGAAGGAATGAAACAACGAACAA 57.431 34.783 0.00 0.00 0.00 2.83
636 637 5.955488 TGAAGGAATGAAACAACGAACAAA 58.045 33.333 0.00 0.00 0.00 2.83
637 638 6.568869 TGAAGGAATGAAACAACGAACAAAT 58.431 32.000 0.00 0.00 0.00 2.32
638 639 6.475076 TGAAGGAATGAAACAACGAACAAATG 59.525 34.615 0.00 0.00 0.00 2.32
639 640 6.142818 AGGAATGAAACAACGAACAAATGA 57.857 33.333 0.00 0.00 0.00 2.57
640 641 6.568869 AGGAATGAAACAACGAACAAATGAA 58.431 32.000 0.00 0.00 0.00 2.57
641 642 7.209475 AGGAATGAAACAACGAACAAATGAAT 58.791 30.769 0.00 0.00 0.00 2.57
642 643 7.169645 AGGAATGAAACAACGAACAAATGAATG 59.830 33.333 0.00 0.00 0.00 2.67
643 644 6.768029 ATGAAACAACGAACAAATGAATGG 57.232 33.333 0.00 0.00 0.00 3.16
644 645 5.046529 TGAAACAACGAACAAATGAATGGG 58.953 37.500 0.00 0.00 0.00 4.00
645 646 3.025287 ACAACGAACAAATGAATGGGC 57.975 42.857 0.00 0.00 0.00 5.36
646 647 2.627699 ACAACGAACAAATGAATGGGCT 59.372 40.909 0.00 0.00 0.00 5.19
647 648 3.069443 ACAACGAACAAATGAATGGGCTT 59.931 39.130 0.00 0.00 0.00 4.35
648 649 4.057432 CAACGAACAAATGAATGGGCTTT 58.943 39.130 0.00 0.00 0.00 3.51
649 650 3.652274 ACGAACAAATGAATGGGCTTTG 58.348 40.909 0.00 0.00 36.26 2.77
650 651 3.320541 ACGAACAAATGAATGGGCTTTGA 59.679 39.130 0.00 0.00 34.69 2.69
651 652 4.202202 ACGAACAAATGAATGGGCTTTGAA 60.202 37.500 0.00 0.00 34.69 2.69
652 653 4.386652 CGAACAAATGAATGGGCTTTGAAG 59.613 41.667 2.18 0.00 34.69 3.02
653 654 5.540911 GAACAAATGAATGGGCTTTGAAGA 58.459 37.500 2.18 0.00 34.69 2.87
654 655 5.750352 ACAAATGAATGGGCTTTGAAGAT 57.250 34.783 2.18 0.00 34.69 2.40
655 656 6.855763 ACAAATGAATGGGCTTTGAAGATA 57.144 33.333 2.18 0.00 34.69 1.98
656 657 6.633856 ACAAATGAATGGGCTTTGAAGATAC 58.366 36.000 2.18 0.00 34.69 2.24
657 658 6.211184 ACAAATGAATGGGCTTTGAAGATACA 59.789 34.615 2.18 0.00 34.69 2.29
658 659 6.855763 AATGAATGGGCTTTGAAGATACAA 57.144 33.333 0.00 0.00 0.00 2.41
659 660 5.643379 TGAATGGGCTTTGAAGATACAAC 57.357 39.130 0.00 0.00 0.00 3.32
660 661 4.462483 TGAATGGGCTTTGAAGATACAACC 59.538 41.667 0.00 0.00 0.00 3.77
661 662 2.802719 TGGGCTTTGAAGATACAACCC 58.197 47.619 0.00 0.00 36.92 4.11
662 663 2.109128 TGGGCTTTGAAGATACAACCCA 59.891 45.455 0.00 0.00 40.96 4.51
663 664 2.755103 GGGCTTTGAAGATACAACCCAG 59.245 50.000 0.00 0.00 36.61 4.45
664 665 3.421844 GGCTTTGAAGATACAACCCAGT 58.578 45.455 0.00 0.00 0.00 4.00
665 666 3.826729 GGCTTTGAAGATACAACCCAGTT 59.173 43.478 0.00 0.00 0.00 3.16
666 667 5.007682 GGCTTTGAAGATACAACCCAGTTA 58.992 41.667 0.00 0.00 0.00 2.24
667 668 5.123979 GGCTTTGAAGATACAACCCAGTTAG 59.876 44.000 0.00 0.00 0.00 2.34
668 669 5.705905 GCTTTGAAGATACAACCCAGTTAGT 59.294 40.000 0.00 0.00 0.00 2.24
669 670 6.206829 GCTTTGAAGATACAACCCAGTTAGTT 59.793 38.462 0.00 0.00 0.00 2.24
670 671 7.573283 GCTTTGAAGATACAACCCAGTTAGTTC 60.573 40.741 0.00 0.00 0.00 3.01
671 672 5.475719 TGAAGATACAACCCAGTTAGTTCG 58.524 41.667 0.00 0.00 0.00 3.95
672 673 4.467198 AGATACAACCCAGTTAGTTCGG 57.533 45.455 0.00 0.00 0.00 4.30
673 674 3.836562 AGATACAACCCAGTTAGTTCGGT 59.163 43.478 0.00 0.00 0.00 4.69
674 675 5.018809 AGATACAACCCAGTTAGTTCGGTA 58.981 41.667 0.00 0.00 0.00 4.02
675 676 3.672767 ACAACCCAGTTAGTTCGGTAG 57.327 47.619 0.00 0.00 0.00 3.18
676 677 2.289257 ACAACCCAGTTAGTTCGGTAGC 60.289 50.000 0.00 0.00 0.00 3.58
677 678 0.529378 ACCCAGTTAGTTCGGTAGCG 59.471 55.000 8.29 8.29 0.00 4.26
678 679 0.529378 CCCAGTTAGTTCGGTAGCGT 59.471 55.000 14.79 0.00 0.00 5.07
679 680 1.745087 CCCAGTTAGTTCGGTAGCGTA 59.255 52.381 14.79 1.01 0.00 4.42
680 681 2.478539 CCCAGTTAGTTCGGTAGCGTAC 60.479 54.545 15.16 15.16 0.00 3.67
681 682 2.434761 CAGTTAGTTCGGTAGCGTACG 58.565 52.381 11.84 11.84 0.00 3.67
682 683 1.183511 GTTAGTTCGGTAGCGTACGC 58.816 55.000 32.17 32.17 42.33 4.42
683 684 0.098728 TTAGTTCGGTAGCGTACGCC 59.901 55.000 34.88 21.18 43.17 5.68
684 685 1.024046 TAGTTCGGTAGCGTACGCCA 61.024 55.000 34.88 21.49 43.17 5.69
685 686 1.444212 GTTCGGTAGCGTACGCCAA 60.444 57.895 34.88 21.78 43.17 4.52
686 687 1.153978 TTCGGTAGCGTACGCCAAG 60.154 57.895 34.88 23.21 43.17 3.61
687 688 1.585267 TTCGGTAGCGTACGCCAAGA 61.585 55.000 34.88 24.95 43.17 3.02
688 689 1.585521 CGGTAGCGTACGCCAAGAG 60.586 63.158 34.88 19.34 43.17 2.85
689 690 1.805254 GGTAGCGTACGCCAAGAGA 59.195 57.895 34.88 12.06 43.17 3.10
690 691 0.525029 GGTAGCGTACGCCAAGAGAC 60.525 60.000 34.88 21.60 43.17 3.36
691 692 0.169672 GTAGCGTACGCCAAGAGACA 59.830 55.000 34.88 8.74 43.17 3.41
692 693 0.883153 TAGCGTACGCCAAGAGACAA 59.117 50.000 34.88 8.04 43.17 3.18
693 694 0.032952 AGCGTACGCCAAGAGACAAA 59.967 50.000 34.88 0.00 43.17 2.83
694 695 1.076332 GCGTACGCCAAGAGACAAAT 58.924 50.000 29.51 0.00 34.56 2.32
695 696 1.060698 GCGTACGCCAAGAGACAAATC 59.939 52.381 29.51 0.00 34.56 2.17
696 697 1.320555 CGTACGCCAAGAGACAAATCG 59.679 52.381 0.52 0.00 0.00 3.34
835 1162 4.138290 CCATATAAACATACAACGGCCCA 58.862 43.478 0.00 0.00 0.00 5.36
844 1171 2.203625 AACGGCCCACCTTGCATT 60.204 55.556 0.00 0.00 0.00 3.56
850 1177 0.972883 GCCCACCTTGCATTTAACCA 59.027 50.000 0.00 0.00 0.00 3.67
851 1178 1.346068 GCCCACCTTGCATTTAACCAA 59.654 47.619 0.00 0.00 0.00 3.67
1488 1816 3.343421 GCCTTCGTGTCCGCGTTT 61.343 61.111 4.92 0.00 0.00 3.60
1569 1897 2.793933 GCGCGACGTCTTCTTATACCTT 60.794 50.000 12.10 0.00 0.00 3.50
1570 1898 3.034562 CGCGACGTCTTCTTATACCTTC 58.965 50.000 14.70 0.00 0.00 3.46
1617 1945 0.753262 ACCTCAGCGCCGAGATATTT 59.247 50.000 22.14 0.00 34.79 1.40
1926 2258 2.242043 AGGCAATTGGTCTCTTTGGTG 58.758 47.619 7.72 0.00 0.00 4.17
2029 2364 7.174946 GGTGAGTTGACTTTATCCTTTTGATGA 59.825 37.037 0.00 0.00 34.76 2.92
2030 2365 8.734386 GTGAGTTGACTTTATCCTTTTGATGAT 58.266 33.333 0.00 0.00 34.76 2.45
2031 2366 8.733458 TGAGTTGACTTTATCCTTTTGATGATG 58.267 33.333 0.00 0.00 34.76 3.07
2082 2417 9.651913 ACTGAGATTCTCAAGAAGAAAGAATAC 57.348 33.333 16.79 0.00 46.85 1.89
2182 2600 8.353423 AGTTTAGGATGTTGCATTCTATTTGT 57.647 30.769 0.00 0.00 0.00 2.83
2267 2751 8.006298 AGTTGATTCACTTGTGTATTTTGGAA 57.994 30.769 0.46 0.00 0.00 3.53
2324 2933 4.901849 AGGCAGTAAGTCTAGCATATCCAA 59.098 41.667 0.00 0.00 0.00 3.53
2368 2977 6.327279 GGTGAAGTTACCAAAGTAAGCATT 57.673 37.500 0.00 0.00 39.13 3.56
2380 2989 9.407380 ACCAAAGTAAGCATTATCATCACATAA 57.593 29.630 0.00 0.00 30.46 1.90
2421 3030 8.537016 TCTTTCCTGTAGCTGCTTAGTTATTTA 58.463 33.333 7.79 0.00 0.00 1.40
2422 3031 8.718102 TTTCCTGTAGCTGCTTAGTTATTTAG 57.282 34.615 7.79 0.00 0.00 1.85
2423 3032 6.817184 TCCTGTAGCTGCTTAGTTATTTAGG 58.183 40.000 7.79 3.38 0.00 2.69
2424 3033 5.467063 CCTGTAGCTGCTTAGTTATTTAGGC 59.533 44.000 7.79 0.00 0.00 3.93
2425 3034 5.365619 TGTAGCTGCTTAGTTATTTAGGCC 58.634 41.667 7.79 0.00 0.00 5.19
2426 3035 4.779993 AGCTGCTTAGTTATTTAGGCCT 57.220 40.909 11.78 11.78 0.00 5.19
2427 3036 4.709250 AGCTGCTTAGTTATTTAGGCCTC 58.291 43.478 9.68 0.00 0.00 4.70
2428 3037 3.815962 GCTGCTTAGTTATTTAGGCCTCC 59.184 47.826 9.68 0.00 0.00 4.30
2429 3038 4.445019 GCTGCTTAGTTATTTAGGCCTCCT 60.445 45.833 9.68 0.00 37.71 3.69
2430 3039 5.685728 CTGCTTAGTTATTTAGGCCTCCTT 58.314 41.667 9.68 0.00 34.61 3.36
2431 3040 6.074698 TGCTTAGTTATTTAGGCCTCCTTT 57.925 37.500 9.68 0.00 34.61 3.11
2432 3041 5.885912 TGCTTAGTTATTTAGGCCTCCTTTG 59.114 40.000 9.68 0.00 34.61 2.77
2433 3042 5.299531 GCTTAGTTATTTAGGCCTCCTTTGG 59.700 44.000 9.68 0.00 34.61 3.28
2434 3043 4.948062 AGTTATTTAGGCCTCCTTTGGT 57.052 40.909 9.68 0.00 34.61 3.67
2435 3044 5.270979 AGTTATTTAGGCCTCCTTTGGTT 57.729 39.130 9.68 0.00 34.61 3.67
2436 3045 5.651303 AGTTATTTAGGCCTCCTTTGGTTT 58.349 37.500 9.68 0.00 34.61 3.27
2437 3046 5.480422 AGTTATTTAGGCCTCCTTTGGTTTG 59.520 40.000 9.68 0.00 34.61 2.93
2438 3047 3.322191 TTTAGGCCTCCTTTGGTTTGT 57.678 42.857 9.68 0.00 34.61 2.83
2439 3048 4.456662 TTTAGGCCTCCTTTGGTTTGTA 57.543 40.909 9.68 0.00 34.61 2.41
2440 3049 2.586648 AGGCCTCCTTTGGTTTGTAG 57.413 50.000 0.00 0.00 0.00 2.74
2441 3050 1.075536 AGGCCTCCTTTGGTTTGTAGG 59.924 52.381 0.00 0.00 0.00 3.18
2442 3051 1.074889 GGCCTCCTTTGGTTTGTAGGA 59.925 52.381 0.00 0.00 36.65 2.94
2443 3052 2.490168 GGCCTCCTTTGGTTTGTAGGAA 60.490 50.000 0.00 0.00 37.61 3.36
2444 3053 3.431415 GCCTCCTTTGGTTTGTAGGAAT 58.569 45.455 0.00 0.00 37.61 3.01
2445 3054 3.832490 GCCTCCTTTGGTTTGTAGGAATT 59.168 43.478 0.00 0.00 37.61 2.17
2446 3055 4.283467 GCCTCCTTTGGTTTGTAGGAATTT 59.717 41.667 0.00 0.00 37.61 1.82
2447 3056 5.221641 GCCTCCTTTGGTTTGTAGGAATTTT 60.222 40.000 0.00 0.00 37.61 1.82
2448 3057 6.223120 CCTCCTTTGGTTTGTAGGAATTTTG 58.777 40.000 0.00 0.00 37.61 2.44
2449 3058 6.183360 CCTCCTTTGGTTTGTAGGAATTTTGT 60.183 38.462 0.00 0.00 37.61 2.83
2450 3059 7.014808 CCTCCTTTGGTTTGTAGGAATTTTGTA 59.985 37.037 0.00 0.00 37.61 2.41
2472 3081 9.906660 TTGTAACTGCTAAGTTCAAAATATTGG 57.093 29.630 0.00 0.00 43.34 3.16
2587 3196 1.108776 CCAATATTGGCTGCAGCTGT 58.891 50.000 35.82 23.65 42.21 4.40
2588 3197 1.479323 CCAATATTGGCTGCAGCTGTT 59.521 47.619 35.82 22.48 42.21 3.16
2593 3203 0.828762 TTGGCTGCAGCTGTTTGGAT 60.829 50.000 35.82 0.00 41.70 3.41
2624 3234 0.321653 ACAATCCGTCCTGGCTGTTC 60.322 55.000 0.00 0.00 37.80 3.18
2698 3308 4.280677 CAGATTAGGGTTTTGTTTGGAGCA 59.719 41.667 0.00 0.00 0.00 4.26
2859 3470 5.426689 TTCCACTGCAATGAGAGATAACT 57.573 39.130 0.00 0.00 0.00 2.24
2897 3508 3.165071 CATTGCCTGGGGTTTTCTTAGT 58.835 45.455 0.00 0.00 0.00 2.24
2903 3514 3.370633 CCTGGGGTTTTCTTAGTCTAGGC 60.371 52.174 0.00 0.00 0.00 3.93
3125 3738 2.499289 AGAACACTCAGATAGGTGGCAG 59.501 50.000 0.00 0.00 37.72 4.85
3260 3876 2.415857 CAGCTGCTAGCAGAAGAACTTG 59.584 50.000 41.87 23.50 45.56 3.16
3283 3899 7.715265 TGCTTCTTCTGTCTTAAGTAAGTTG 57.285 36.000 1.63 0.68 34.93 3.16
3612 4231 4.922206 TCAGTGTATGCTTCCATTTCCTT 58.078 39.130 0.00 0.00 32.85 3.36
3637 4256 2.627863 TAACATTTGATGCCGCACAC 57.372 45.000 0.00 0.00 0.00 3.82
3638 4257 0.387112 AACATTTGATGCCGCACACG 60.387 50.000 0.00 0.00 39.67 4.49
3657 4276 4.099824 CACGGTTCCAAACAGTTTACAAC 58.900 43.478 0.00 4.69 37.72 3.32
3665 4284 6.181908 TCCAAACAGTTTACAACCTTGTACT 58.818 36.000 0.00 0.00 42.84 2.73
3755 4382 0.240945 ACTACCGCAAAGTGCAATGC 59.759 50.000 0.00 0.00 45.36 3.56
3798 4425 8.815141 TGCAATGACATAAATGCAATATAACC 57.185 30.769 10.19 0.00 45.04 2.85
3802 4429 7.197071 TGACATAAATGCAATATAACCCGAC 57.803 36.000 0.00 0.00 0.00 4.79
3803 4430 6.073494 TGACATAAATGCAATATAACCCGACG 60.073 38.462 0.00 0.00 0.00 5.12
3808 4435 2.937799 TGCAATATAACCCGACGTTTCC 59.062 45.455 0.00 0.00 35.79 3.13
3809 4436 3.200483 GCAATATAACCCGACGTTTCCT 58.800 45.455 0.00 0.00 35.79 3.36
3822 4449 4.376008 CGACGTTTCCTTGTACTGATGTTG 60.376 45.833 0.00 0.00 0.00 3.33
3830 4457 7.724305 TCCTTGTACTGATGTTGTAAAACTC 57.276 36.000 0.00 0.00 0.00 3.01
3831 4458 7.506114 TCCTTGTACTGATGTTGTAAAACTCT 58.494 34.615 0.00 0.00 0.00 3.24
3832 4459 8.644216 TCCTTGTACTGATGTTGTAAAACTCTA 58.356 33.333 0.00 0.00 0.00 2.43
3833 4460 8.926710 CCTTGTACTGATGTTGTAAAACTCTAG 58.073 37.037 0.00 0.00 0.00 2.43
3834 4461 7.884816 TGTACTGATGTTGTAAAACTCTAGC 57.115 36.000 0.00 0.00 0.00 3.42
3836 4463 8.799367 TGTACTGATGTTGTAAAACTCTAGCTA 58.201 33.333 0.00 0.00 0.00 3.32
3837 4464 9.635520 GTACTGATGTTGTAAAACTCTAGCTAA 57.364 33.333 0.00 0.00 0.00 3.09
3901 4528 5.010933 CCTAGCACGAGATTAGGAGGAATA 58.989 45.833 5.35 0.00 36.83 1.75
3925 4552 6.757237 ACTGCACAATTGTTTTGATGGATAA 58.243 32.000 8.77 0.00 0.00 1.75
3936 4563 8.672823 TGTTTTGATGGATAATCAGATCTGAG 57.327 34.615 28.26 2.47 46.01 3.35
3945 4572 7.881751 TGGATAATCAGATCTGAGCCTTTTATG 59.118 37.037 28.26 0.00 43.61 1.90
3948 4575 5.682234 TCAGATCTGAGCCTTTTATGTGA 57.318 39.130 21.67 0.00 34.14 3.58
4016 4648 1.800805 ACTCATTCTGCAAGGTCACG 58.199 50.000 0.00 0.00 0.00 4.35
4021 4653 2.010145 TTCTGCAAGGTCACGCTATC 57.990 50.000 0.00 0.00 0.00 2.08
4022 4654 0.894835 TCTGCAAGGTCACGCTATCA 59.105 50.000 0.00 0.00 0.00 2.15
4039 4671 6.551227 ACGCTATCATCTATATCCTTGCCATA 59.449 38.462 0.00 0.00 0.00 2.74
4047 4679 7.904558 TCTATATCCTTGCCATATCTACCAG 57.095 40.000 0.00 0.00 0.00 4.00
4069 4703 3.445096 GGATGTTCAAGCTTTACCATGCT 59.555 43.478 0.00 0.00 41.82 3.79
4123 4762 6.732896 ATCGTTCCCTGTAAATCAGATACT 57.267 37.500 0.00 0.00 46.27 2.12
4133 4772 9.237187 CCTGTAAATCAGATACTAGAGCAGATA 57.763 37.037 0.00 0.00 46.27 1.98
4212 4851 3.130633 CGAACTCATGTCTTGTTGGTGA 58.869 45.455 0.00 0.00 0.00 4.02
4227 4866 5.620206 TGTTGGTGATCAATAAGTGTGAGT 58.380 37.500 0.00 0.00 37.73 3.41
4276 4915 5.475564 TCTCATTTTAGGGCAGTGTTTAACC 59.524 40.000 0.00 0.00 0.00 2.85
4288 4929 4.271049 CAGTGTTTAACCACTCACTGTCAG 59.729 45.833 2.17 0.00 46.92 3.51
4305 4946 4.842574 TGTCAGGCATCAGCTATGTTTTA 58.157 39.130 0.00 0.00 41.70 1.52
4312 4955 7.227314 CAGGCATCAGCTATGTTTTACTCATAA 59.773 37.037 0.00 0.00 41.70 1.90
4337 4980 9.683069 AAGAACATGTTTATTGCTTTAGTGAAG 57.317 29.630 13.36 0.00 38.45 3.02
4347 4990 9.801873 TTATTGCTTTAGTGAAGATATTTTGCC 57.198 29.630 0.00 0.00 37.57 4.52
4387 5032 7.589587 CAGACTTTCTATGTACAATAGAGCTCG 59.410 40.741 8.37 0.00 32.81 5.03
4438 5083 4.206375 TCCTGTTGTTGCATCTTTGAAGA 58.794 39.130 0.00 0.00 39.78 2.87
4439 5084 4.828939 TCCTGTTGTTGCATCTTTGAAGAT 59.171 37.500 0.44 0.44 46.30 2.40
4440 5085 5.302568 TCCTGTTGTTGCATCTTTGAAGATT 59.697 36.000 3.54 0.00 42.96 2.40
4441 5086 5.404366 CCTGTTGTTGCATCTTTGAAGATTG 59.596 40.000 3.54 2.25 42.96 2.67
4654 5413 4.096532 TGGAACAAATTTTACGTCTGTGCA 59.903 37.500 0.00 0.00 31.92 4.57
4804 5563 3.806949 TGTTTGGCTCTATCCCACTTT 57.193 42.857 0.00 0.00 30.65 2.66
4858 5617 5.372343 ACATTGCAAGTACCCTCATATCA 57.628 39.130 4.94 0.00 0.00 2.15
4990 5749 0.413037 TGGCATGGGGGAATTCTGTT 59.587 50.000 5.23 0.00 0.00 3.16
5444 6207 9.645059 CTTCTTGACTTATTCTAACTGTCATGA 57.355 33.333 0.00 0.00 38.85 3.07
5459 6222 7.565190 ACTGTCATGATATATGTGAGGGAAT 57.435 36.000 0.00 0.00 0.00 3.01
5477 6240 4.276926 GGGAATATCTGTTCATCAAGTGCC 59.723 45.833 0.00 0.00 0.00 5.01
5545 6312 9.715121 ATTTTATGAATTGCAGAGAACACAATT 57.285 25.926 0.00 0.00 44.44 2.32
5641 6408 2.065799 AGTTTTCCTCACTCCCCATGT 58.934 47.619 0.00 0.00 0.00 3.21
5780 6551 4.038763 AGTCCTTGTCGTCTCAAATGTGTA 59.961 41.667 0.00 0.00 0.00 2.90
5821 6592 8.887717 TCCTCGTAATCTACTGTTCTACTTTAC 58.112 37.037 0.00 0.00 0.00 2.01
5822 6593 8.891720 CCTCGTAATCTACTGTTCTACTTTACT 58.108 37.037 0.00 0.00 0.00 2.24
5851 6706 3.833732 TCTAGAGCATGGGTAGTTCGAT 58.166 45.455 0.00 0.00 0.00 3.59
5967 6988 3.525199 AGGAGACTGCCAAGATACCATTT 59.475 43.478 0.00 0.00 41.13 2.32
6109 7134 1.660052 CCGATCAACACAGCACAAACG 60.660 52.381 0.00 0.00 0.00 3.60
6135 7160 9.575783 GGAAAAGTACATTGTCTACAAAAACAA 57.424 29.630 0.00 0.00 39.55 2.83
6152 7177 6.801539 AAAACAACATCATCGTACATCACT 57.198 33.333 0.00 0.00 0.00 3.41
6212 7237 3.118038 ACTTCACCAAAGAGCACCAGTTA 60.118 43.478 0.00 0.00 38.44 2.24
6242 7268 2.560504 CATTAGACCGCCACAAGCATA 58.439 47.619 0.00 0.00 44.04 3.14
6255 7951 5.067674 GCCACAAGCATATTTGATGACCTTA 59.932 40.000 0.00 0.00 42.97 2.69
6289 8000 8.352201 CAGAGAGAGAAGAAATATCTGACGATT 58.648 37.037 0.00 0.00 35.78 3.34
6316 8029 1.065926 TGAATGTGCCGCTCTGATCTT 60.066 47.619 0.00 0.00 0.00 2.40
6345 8058 3.192844 ACGACCAACATGACTCGTCTAAT 59.807 43.478 0.00 0.00 34.30 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.820656 GCAAAGGTCATGAAGAAGAAGATAGA 59.179 38.462 0.00 0.00 0.00 1.98
1 2 6.822676 AGCAAAGGTCATGAAGAAGAAGATAG 59.177 38.462 0.00 0.00 0.00 2.08
2 3 6.715280 AGCAAAGGTCATGAAGAAGAAGATA 58.285 36.000 0.00 0.00 0.00 1.98
3 4 5.568392 AGCAAAGGTCATGAAGAAGAAGAT 58.432 37.500 0.00 0.00 0.00 2.40
4 5 4.978099 AGCAAAGGTCATGAAGAAGAAGA 58.022 39.130 0.00 0.00 0.00 2.87
5 6 4.155644 GGAGCAAAGGTCATGAAGAAGAAG 59.844 45.833 0.00 0.00 0.00 2.85
6 7 4.074970 GGAGCAAAGGTCATGAAGAAGAA 58.925 43.478 0.00 0.00 0.00 2.52
7 8 3.560025 GGGAGCAAAGGTCATGAAGAAGA 60.560 47.826 0.00 0.00 0.00 2.87
8 9 2.751806 GGGAGCAAAGGTCATGAAGAAG 59.248 50.000 0.00 0.00 0.00 2.85
9 10 2.108075 TGGGAGCAAAGGTCATGAAGAA 59.892 45.455 0.00 0.00 0.00 2.52
10 11 1.704628 TGGGAGCAAAGGTCATGAAGA 59.295 47.619 0.00 0.00 0.00 2.87
11 12 2.089980 CTGGGAGCAAAGGTCATGAAG 58.910 52.381 0.00 0.00 0.00 3.02
12 13 1.425066 ACTGGGAGCAAAGGTCATGAA 59.575 47.619 0.00 0.00 0.00 2.57
13 14 1.067295 ACTGGGAGCAAAGGTCATGA 58.933 50.000 0.00 0.00 0.00 3.07
14 15 2.787473 TACTGGGAGCAAAGGTCATG 57.213 50.000 0.00 0.00 0.00 3.07
15 16 3.525199 AGAATACTGGGAGCAAAGGTCAT 59.475 43.478 0.00 0.00 0.00 3.06
16 17 2.912956 AGAATACTGGGAGCAAAGGTCA 59.087 45.455 0.00 0.00 0.00 4.02
17 18 3.198853 AGAGAATACTGGGAGCAAAGGTC 59.801 47.826 0.00 0.00 0.00 3.85
18 19 3.185455 AGAGAATACTGGGAGCAAAGGT 58.815 45.455 0.00 0.00 0.00 3.50
19 20 3.432890 GGAGAGAATACTGGGAGCAAAGG 60.433 52.174 0.00 0.00 0.00 3.11
20 21 3.432890 GGGAGAGAATACTGGGAGCAAAG 60.433 52.174 0.00 0.00 0.00 2.77
21 22 2.505819 GGGAGAGAATACTGGGAGCAAA 59.494 50.000 0.00 0.00 0.00 3.68
22 23 2.119495 GGGAGAGAATACTGGGAGCAA 58.881 52.381 0.00 0.00 0.00 3.91
23 24 1.692762 GGGGAGAGAATACTGGGAGCA 60.693 57.143 0.00 0.00 0.00 4.26
24 25 1.052617 GGGGAGAGAATACTGGGAGC 58.947 60.000 0.00 0.00 0.00 4.70
25 26 2.604139 GAGGGGAGAGAATACTGGGAG 58.396 57.143 0.00 0.00 0.00 4.30
26 27 1.220750 GGAGGGGAGAGAATACTGGGA 59.779 57.143 0.00 0.00 0.00 4.37
27 28 1.723288 GGAGGGGAGAGAATACTGGG 58.277 60.000 0.00 0.00 0.00 4.45
28 29 1.333177 CGGAGGGGAGAGAATACTGG 58.667 60.000 0.00 0.00 0.00 4.00
29 30 0.676736 GCGGAGGGGAGAGAATACTG 59.323 60.000 0.00 0.00 0.00 2.74
30 31 0.558712 AGCGGAGGGGAGAGAATACT 59.441 55.000 0.00 0.00 0.00 2.12
31 32 1.341852 GAAGCGGAGGGGAGAGAATAC 59.658 57.143 0.00 0.00 0.00 1.89
32 33 1.218196 AGAAGCGGAGGGGAGAGAATA 59.782 52.381 0.00 0.00 0.00 1.75
33 34 0.031616 AGAAGCGGAGGGGAGAGAAT 60.032 55.000 0.00 0.00 0.00 2.40
34 35 0.972983 CAGAAGCGGAGGGGAGAGAA 60.973 60.000 0.00 0.00 0.00 2.87
35 36 1.380515 CAGAAGCGGAGGGGAGAGA 60.381 63.158 0.00 0.00 0.00 3.10
36 37 2.430610 CCAGAAGCGGAGGGGAGAG 61.431 68.421 0.00 0.00 0.00 3.20
37 38 2.364317 CCAGAAGCGGAGGGGAGA 60.364 66.667 0.00 0.00 0.00 3.71
38 39 4.168291 GCCAGAAGCGGAGGGGAG 62.168 72.222 0.00 0.00 0.00 4.30
47 48 1.931007 AAGGAGGGGATGCCAGAAGC 61.931 60.000 5.30 0.00 44.14 3.86
48 49 0.182299 GAAGGAGGGGATGCCAGAAG 59.818 60.000 5.30 0.00 0.00 2.85
49 50 1.281925 GGAAGGAGGGGATGCCAGAA 61.282 60.000 5.30 0.00 0.00 3.02
50 51 1.694169 GGAAGGAGGGGATGCCAGA 60.694 63.158 5.30 0.00 0.00 3.86
51 52 2.761465 GGGAAGGAGGGGATGCCAG 61.761 68.421 5.30 0.00 0.00 4.85
52 53 2.696125 GGGAAGGAGGGGATGCCA 60.696 66.667 5.30 0.00 0.00 4.92
53 54 2.696125 TGGGAAGGAGGGGATGCC 60.696 66.667 0.00 0.00 0.00 4.40
54 55 2.922234 CTGGGAAGGAGGGGATGC 59.078 66.667 0.00 0.00 0.00 3.91
55 56 1.695597 AGCTGGGAAGGAGGGGATG 60.696 63.158 0.00 0.00 0.00 3.51
56 57 1.695597 CAGCTGGGAAGGAGGGGAT 60.696 63.158 5.57 0.00 0.00 3.85
57 58 2.285668 CAGCTGGGAAGGAGGGGA 60.286 66.667 5.57 0.00 0.00 4.81
58 59 4.120755 GCAGCTGGGAAGGAGGGG 62.121 72.222 17.12 0.00 0.00 4.79
59 60 4.120755 GGCAGCTGGGAAGGAGGG 62.121 72.222 17.12 0.00 0.00 4.30
60 61 4.479993 CGGCAGCTGGGAAGGAGG 62.480 72.222 17.12 0.00 0.00 4.30
76 77 4.918201 GATGGGAGGGAAGCGGCG 62.918 72.222 0.51 0.51 0.00 6.46
77 78 3.125376 ATGATGGGAGGGAAGCGGC 62.125 63.158 0.00 0.00 0.00 6.53
78 79 1.072159 GATGATGGGAGGGAAGCGG 59.928 63.158 0.00 0.00 0.00 5.52
79 80 0.034616 GAGATGATGGGAGGGAAGCG 59.965 60.000 0.00 0.00 0.00 4.68
80 81 0.399833 GGAGATGATGGGAGGGAAGC 59.600 60.000 0.00 0.00 0.00 3.86
81 82 1.063183 GGGAGATGATGGGAGGGAAG 58.937 60.000 0.00 0.00 0.00 3.46
82 83 0.649992 AGGGAGATGATGGGAGGGAA 59.350 55.000 0.00 0.00 0.00 3.97
83 84 0.649992 AAGGGAGATGATGGGAGGGA 59.350 55.000 0.00 0.00 0.00 4.20
84 85 1.063183 GAAGGGAGATGATGGGAGGG 58.937 60.000 0.00 0.00 0.00 4.30
85 86 2.115337 AGAAGGGAGATGATGGGAGG 57.885 55.000 0.00 0.00 0.00 4.30
86 87 3.326297 GGTAAGAAGGGAGATGATGGGAG 59.674 52.174 0.00 0.00 0.00 4.30
87 88 3.051032 AGGTAAGAAGGGAGATGATGGGA 60.051 47.826 0.00 0.00 0.00 4.37
88 89 3.321950 AGGTAAGAAGGGAGATGATGGG 58.678 50.000 0.00 0.00 0.00 4.00
89 90 6.296145 GGATTAGGTAAGAAGGGAGATGATGG 60.296 46.154 0.00 0.00 0.00 3.51
90 91 6.270927 TGGATTAGGTAAGAAGGGAGATGATG 59.729 42.308 0.00 0.00 0.00 3.07
91 92 6.271159 GTGGATTAGGTAAGAAGGGAGATGAT 59.729 42.308 0.00 0.00 0.00 2.45
92 93 5.602978 GTGGATTAGGTAAGAAGGGAGATGA 59.397 44.000 0.00 0.00 0.00 2.92
93 94 5.221742 GGTGGATTAGGTAAGAAGGGAGATG 60.222 48.000 0.00 0.00 0.00 2.90
94 95 4.908481 GGTGGATTAGGTAAGAAGGGAGAT 59.092 45.833 0.00 0.00 0.00 2.75
95 96 4.296056 GGTGGATTAGGTAAGAAGGGAGA 58.704 47.826 0.00 0.00 0.00 3.71
96 97 3.391626 GGGTGGATTAGGTAAGAAGGGAG 59.608 52.174 0.00 0.00 0.00 4.30
97 98 3.390819 GGGTGGATTAGGTAAGAAGGGA 58.609 50.000 0.00 0.00 0.00 4.20
98 99 2.104281 CGGGTGGATTAGGTAAGAAGGG 59.896 54.545 0.00 0.00 0.00 3.95
99 100 2.484947 GCGGGTGGATTAGGTAAGAAGG 60.485 54.545 0.00 0.00 0.00 3.46
100 101 2.434702 AGCGGGTGGATTAGGTAAGAAG 59.565 50.000 0.00 0.00 0.00 2.85
101 102 2.474112 AGCGGGTGGATTAGGTAAGAA 58.526 47.619 0.00 0.00 0.00 2.52
102 103 2.170012 AGCGGGTGGATTAGGTAAGA 57.830 50.000 0.00 0.00 0.00 2.10
103 104 2.963782 AGTAGCGGGTGGATTAGGTAAG 59.036 50.000 0.00 0.00 0.00 2.34
104 105 3.036452 AGTAGCGGGTGGATTAGGTAA 57.964 47.619 0.00 0.00 0.00 2.85
105 106 2.761786 AGTAGCGGGTGGATTAGGTA 57.238 50.000 0.00 0.00 0.00 3.08
106 107 1.761198 GAAGTAGCGGGTGGATTAGGT 59.239 52.381 0.00 0.00 0.00 3.08
107 108 1.760613 TGAAGTAGCGGGTGGATTAGG 59.239 52.381 0.00 0.00 0.00 2.69
108 109 2.483188 GGTGAAGTAGCGGGTGGATTAG 60.483 54.545 0.00 0.00 0.00 1.73
109 110 1.483415 GGTGAAGTAGCGGGTGGATTA 59.517 52.381 0.00 0.00 0.00 1.75
110 111 0.252197 GGTGAAGTAGCGGGTGGATT 59.748 55.000 0.00 0.00 0.00 3.01
111 112 0.617820 AGGTGAAGTAGCGGGTGGAT 60.618 55.000 0.00 0.00 0.00 3.41
112 113 0.834687 AAGGTGAAGTAGCGGGTGGA 60.835 55.000 0.00 0.00 0.00 4.02
113 114 0.391263 GAAGGTGAAGTAGCGGGTGG 60.391 60.000 0.00 0.00 0.00 4.61
114 115 0.608640 AGAAGGTGAAGTAGCGGGTG 59.391 55.000 0.00 0.00 0.00 4.61
115 116 0.896226 GAGAAGGTGAAGTAGCGGGT 59.104 55.000 0.00 0.00 0.00 5.28
116 117 0.175989 GGAGAAGGTGAAGTAGCGGG 59.824 60.000 0.00 0.00 0.00 6.13
117 118 0.179134 CGGAGAAGGTGAAGTAGCGG 60.179 60.000 0.00 0.00 0.00 5.52
118 119 0.526662 ACGGAGAAGGTGAAGTAGCG 59.473 55.000 0.00 0.00 0.00 4.26
119 120 3.509740 GTTACGGAGAAGGTGAAGTAGC 58.490 50.000 0.00 0.00 0.00 3.58
120 121 3.762823 AGGTTACGGAGAAGGTGAAGTAG 59.237 47.826 0.00 0.00 0.00 2.57
121 122 3.760684 GAGGTTACGGAGAAGGTGAAGTA 59.239 47.826 0.00 0.00 0.00 2.24
122 123 2.561858 GAGGTTACGGAGAAGGTGAAGT 59.438 50.000 0.00 0.00 0.00 3.01
123 124 2.094130 GGAGGTTACGGAGAAGGTGAAG 60.094 54.545 0.00 0.00 0.00 3.02
124 125 1.897802 GGAGGTTACGGAGAAGGTGAA 59.102 52.381 0.00 0.00 0.00 3.18
125 126 1.076677 AGGAGGTTACGGAGAAGGTGA 59.923 52.381 0.00 0.00 0.00 4.02
126 127 1.558233 AGGAGGTTACGGAGAAGGTG 58.442 55.000 0.00 0.00 0.00 4.00
127 128 1.900486 CAAGGAGGTTACGGAGAAGGT 59.100 52.381 0.00 0.00 0.00 3.50
128 129 1.405661 GCAAGGAGGTTACGGAGAAGG 60.406 57.143 0.00 0.00 0.00 3.46
129 130 1.405661 GGCAAGGAGGTTACGGAGAAG 60.406 57.143 0.00 0.00 0.00 2.85
130 131 0.611714 GGCAAGGAGGTTACGGAGAA 59.388 55.000 0.00 0.00 0.00 2.87
131 132 1.601419 CGGCAAGGAGGTTACGGAGA 61.601 60.000 0.00 0.00 0.00 3.71
132 133 1.153628 CGGCAAGGAGGTTACGGAG 60.154 63.158 0.00 0.00 0.00 4.63
133 134 2.975536 CGGCAAGGAGGTTACGGA 59.024 61.111 0.00 0.00 0.00 4.69
134 135 2.818274 GCGGCAAGGAGGTTACGG 60.818 66.667 0.00 0.00 0.00 4.02
135 136 2.818274 GGCGGCAAGGAGGTTACG 60.818 66.667 3.07 0.00 0.00 3.18
136 137 2.818274 CGGCGGCAAGGAGGTTAC 60.818 66.667 10.53 0.00 0.00 2.50
137 138 4.770874 GCGGCGGCAAGGAGGTTA 62.771 66.667 9.78 0.00 39.62 2.85
481 482 1.804748 GTCCACAAAATCCTCACGTCC 59.195 52.381 0.00 0.00 0.00 4.79
482 483 2.737252 GAGTCCACAAAATCCTCACGTC 59.263 50.000 0.00 0.00 0.00 4.34
483 484 2.550208 GGAGTCCACAAAATCCTCACGT 60.550 50.000 3.60 0.00 0.00 4.49
484 485 2.076863 GGAGTCCACAAAATCCTCACG 58.923 52.381 3.60 0.00 0.00 4.35
485 486 2.076863 CGGAGTCCACAAAATCCTCAC 58.923 52.381 10.49 0.00 0.00 3.51
486 487 1.003118 CCGGAGTCCACAAAATCCTCA 59.997 52.381 10.49 0.00 0.00 3.86
487 488 1.739067 CCGGAGTCCACAAAATCCTC 58.261 55.000 10.49 0.00 0.00 3.71
488 489 0.322546 GCCGGAGTCCACAAAATCCT 60.323 55.000 5.05 0.00 0.00 3.24
489 490 1.644786 CGCCGGAGTCCACAAAATCC 61.645 60.000 5.05 0.00 0.00 3.01
490 491 0.672401 TCGCCGGAGTCCACAAAATC 60.672 55.000 5.05 0.00 0.00 2.17
491 492 0.250553 TTCGCCGGAGTCCACAAAAT 60.251 50.000 5.05 0.00 0.00 1.82
492 493 0.464013 TTTCGCCGGAGTCCACAAAA 60.464 50.000 5.05 0.00 0.00 2.44
493 494 0.464013 TTTTCGCCGGAGTCCACAAA 60.464 50.000 5.05 0.00 0.00 2.83
494 495 0.250553 ATTTTCGCCGGAGTCCACAA 60.251 50.000 5.05 0.00 0.00 3.33
495 496 0.672401 GATTTTCGCCGGAGTCCACA 60.672 55.000 5.05 0.00 0.00 4.17
496 497 1.693083 CGATTTTCGCCGGAGTCCAC 61.693 60.000 5.05 0.00 31.14 4.02
497 498 1.447140 CGATTTTCGCCGGAGTCCA 60.447 57.895 5.05 0.00 31.14 4.02
498 499 3.395669 CGATTTTCGCCGGAGTCC 58.604 61.111 5.05 0.00 31.14 3.85
507 508 1.419374 CTATCCTCGGGCGATTTTCG 58.581 55.000 0.00 0.00 43.89 3.46
508 509 1.608283 CCCTATCCTCGGGCGATTTTC 60.608 57.143 0.00 0.00 34.32 2.29
509 510 0.396811 CCCTATCCTCGGGCGATTTT 59.603 55.000 0.00 0.00 34.32 1.82
510 511 0.471211 TCCCTATCCTCGGGCGATTT 60.471 55.000 0.00 0.00 41.69 2.17
511 512 0.471211 TTCCCTATCCTCGGGCGATT 60.471 55.000 0.00 0.00 41.69 3.34
512 513 0.471211 TTTCCCTATCCTCGGGCGAT 60.471 55.000 0.00 0.00 41.69 4.58
513 514 1.075822 TTTCCCTATCCTCGGGCGA 60.076 57.895 0.00 0.00 41.69 5.54
514 515 1.069258 GTTTCCCTATCCTCGGGCG 59.931 63.158 0.00 0.00 41.69 6.13
515 516 1.450642 GGTTTCCCTATCCTCGGGC 59.549 63.158 0.00 0.00 41.69 6.13
516 517 2.143129 GGGTTTCCCTATCCTCGGG 58.857 63.158 0.00 0.00 41.34 5.14
526 527 3.371702 CCCTTAGCTTTCTAGGGTTTCCC 60.372 52.174 12.42 0.00 45.90 3.97
527 528 3.522343 TCCCTTAGCTTTCTAGGGTTTCC 59.478 47.826 17.46 0.00 39.64 3.13
528 529 4.838904 TCCCTTAGCTTTCTAGGGTTTC 57.161 45.455 17.46 0.00 39.64 2.78
529 530 5.594199 TTTCCCTTAGCTTTCTAGGGTTT 57.406 39.130 17.46 0.00 39.64 3.27
530 531 5.594199 TTTTCCCTTAGCTTTCTAGGGTT 57.406 39.130 17.46 0.00 39.64 4.11
531 532 5.594199 TTTTTCCCTTAGCTTTCTAGGGT 57.406 39.130 17.46 0.00 39.64 4.34
568 569 4.337145 ACCAGTGTGTGTTCCACTAAAAA 58.663 39.130 0.00 0.00 44.81 1.94
569 570 3.958018 ACCAGTGTGTGTTCCACTAAAA 58.042 40.909 0.00 0.00 44.81 1.52
570 571 3.637911 ACCAGTGTGTGTTCCACTAAA 57.362 42.857 0.00 0.00 44.81 1.85
571 572 3.637911 AACCAGTGTGTGTTCCACTAA 57.362 42.857 0.00 0.00 44.81 2.24
572 573 3.637911 AAACCAGTGTGTGTTCCACTA 57.362 42.857 0.00 0.00 44.81 2.74
573 574 2.507407 AAACCAGTGTGTGTTCCACT 57.493 45.000 0.00 0.00 44.81 4.00
574 575 2.032924 GCTAAACCAGTGTGTGTTCCAC 59.967 50.000 0.00 0.00 44.78 4.02
575 576 2.092646 AGCTAAACCAGTGTGTGTTCCA 60.093 45.455 0.00 0.00 0.00 3.53
576 577 2.548480 GAGCTAAACCAGTGTGTGTTCC 59.452 50.000 0.00 0.00 0.00 3.62
577 578 3.467803 AGAGCTAAACCAGTGTGTGTTC 58.532 45.455 0.00 0.00 0.00 3.18
578 579 3.560636 AGAGCTAAACCAGTGTGTGTT 57.439 42.857 0.00 0.00 0.00 3.32
579 580 3.244112 GGTAGAGCTAAACCAGTGTGTGT 60.244 47.826 11.27 0.00 35.73 3.72
580 581 3.244078 TGGTAGAGCTAAACCAGTGTGTG 60.244 47.826 14.23 0.00 40.84 3.82
581 582 2.969950 TGGTAGAGCTAAACCAGTGTGT 59.030 45.455 14.23 0.00 40.84 3.72
582 583 3.326747 GTGGTAGAGCTAAACCAGTGTG 58.673 50.000 17.76 0.00 46.19 3.82
583 584 2.302157 GGTGGTAGAGCTAAACCAGTGT 59.698 50.000 17.76 0.00 46.19 3.55
584 585 2.301870 TGGTGGTAGAGCTAAACCAGTG 59.698 50.000 17.76 0.00 46.19 3.66
585 586 2.616524 TGGTGGTAGAGCTAAACCAGT 58.383 47.619 17.76 0.00 46.19 4.00
586 587 3.695830 TTGGTGGTAGAGCTAAACCAG 57.304 47.619 17.76 0.00 46.19 4.00
587 588 3.649023 TCTTTGGTGGTAGAGCTAAACCA 59.351 43.478 14.23 14.23 43.47 3.67
588 589 4.281898 TCTTTGGTGGTAGAGCTAAACC 57.718 45.455 9.56 9.56 36.24 3.27
589 590 7.769044 TCATAATCTTTGGTGGTAGAGCTAAAC 59.231 37.037 0.00 0.00 0.00 2.01
590 591 7.857456 TCATAATCTTTGGTGGTAGAGCTAAA 58.143 34.615 0.00 0.00 0.00 1.85
591 592 7.432148 TCATAATCTTTGGTGGTAGAGCTAA 57.568 36.000 0.00 0.00 0.00 3.09
592 593 7.419057 CCTTCATAATCTTTGGTGGTAGAGCTA 60.419 40.741 0.00 0.00 0.00 3.32
593 594 5.957771 TCATAATCTTTGGTGGTAGAGCT 57.042 39.130 0.00 0.00 0.00 4.09
594 595 5.529060 CCTTCATAATCTTTGGTGGTAGAGC 59.471 44.000 0.00 0.00 0.00 4.09
595 596 6.889198 TCCTTCATAATCTTTGGTGGTAGAG 58.111 40.000 0.00 0.00 0.00 2.43
596 597 6.884472 TCCTTCATAATCTTTGGTGGTAGA 57.116 37.500 0.00 0.00 0.00 2.59
597 598 7.775093 TCATTCCTTCATAATCTTTGGTGGTAG 59.225 37.037 0.00 0.00 0.00 3.18
598 599 7.638444 TCATTCCTTCATAATCTTTGGTGGTA 58.362 34.615 0.00 0.00 0.00 3.25
599 600 6.493166 TCATTCCTTCATAATCTTTGGTGGT 58.507 36.000 0.00 0.00 0.00 4.16
600 601 7.408756 TTCATTCCTTCATAATCTTTGGTGG 57.591 36.000 0.00 0.00 0.00 4.61
601 602 8.306038 TGTTTCATTCCTTCATAATCTTTGGTG 58.694 33.333 0.00 0.00 0.00 4.17
602 603 8.421249 TGTTTCATTCCTTCATAATCTTTGGT 57.579 30.769 0.00 0.00 0.00 3.67
603 604 9.143631 GTTGTTTCATTCCTTCATAATCTTTGG 57.856 33.333 0.00 0.00 0.00 3.28
604 605 8.853345 CGTTGTTTCATTCCTTCATAATCTTTG 58.147 33.333 0.00 0.00 0.00 2.77
605 606 8.792633 TCGTTGTTTCATTCCTTCATAATCTTT 58.207 29.630 0.00 0.00 0.00 2.52
606 607 8.335532 TCGTTGTTTCATTCCTTCATAATCTT 57.664 30.769 0.00 0.00 0.00 2.40
607 608 7.921786 TCGTTGTTTCATTCCTTCATAATCT 57.078 32.000 0.00 0.00 0.00 2.40
608 609 8.020819 TGTTCGTTGTTTCATTCCTTCATAATC 58.979 33.333 0.00 0.00 0.00 1.75
609 610 7.881142 TGTTCGTTGTTTCATTCCTTCATAAT 58.119 30.769 0.00 0.00 0.00 1.28
610 611 7.265647 TGTTCGTTGTTTCATTCCTTCATAA 57.734 32.000 0.00 0.00 0.00 1.90
611 612 6.869315 TGTTCGTTGTTTCATTCCTTCATA 57.131 33.333 0.00 0.00 0.00 2.15
612 613 5.766150 TGTTCGTTGTTTCATTCCTTCAT 57.234 34.783 0.00 0.00 0.00 2.57
613 614 5.568685 TTGTTCGTTGTTTCATTCCTTCA 57.431 34.783 0.00 0.00 0.00 3.02
614 615 6.695278 TCATTTGTTCGTTGTTTCATTCCTTC 59.305 34.615 0.00 0.00 0.00 3.46
615 616 6.568869 TCATTTGTTCGTTGTTTCATTCCTT 58.431 32.000 0.00 0.00 0.00 3.36
616 617 6.142818 TCATTTGTTCGTTGTTTCATTCCT 57.857 33.333 0.00 0.00 0.00 3.36
617 618 6.820470 TTCATTTGTTCGTTGTTTCATTCC 57.180 33.333 0.00 0.00 0.00 3.01
618 619 7.282916 CCATTCATTTGTTCGTTGTTTCATTC 58.717 34.615 0.00 0.00 0.00 2.67
619 620 6.202570 CCCATTCATTTGTTCGTTGTTTCATT 59.797 34.615 0.00 0.00 0.00 2.57
620 621 5.695816 CCCATTCATTTGTTCGTTGTTTCAT 59.304 36.000 0.00 0.00 0.00 2.57
621 622 5.046529 CCCATTCATTTGTTCGTTGTTTCA 58.953 37.500 0.00 0.00 0.00 2.69
622 623 4.084589 GCCCATTCATTTGTTCGTTGTTTC 60.085 41.667 0.00 0.00 0.00 2.78
623 624 3.807071 GCCCATTCATTTGTTCGTTGTTT 59.193 39.130 0.00 0.00 0.00 2.83
624 625 3.069443 AGCCCATTCATTTGTTCGTTGTT 59.931 39.130 0.00 0.00 0.00 2.83
625 626 2.627699 AGCCCATTCATTTGTTCGTTGT 59.372 40.909 0.00 0.00 0.00 3.32
626 627 3.302365 AGCCCATTCATTTGTTCGTTG 57.698 42.857 0.00 0.00 0.00 4.10
627 628 4.057432 CAAAGCCCATTCATTTGTTCGTT 58.943 39.130 0.00 0.00 0.00 3.85
628 629 3.320541 TCAAAGCCCATTCATTTGTTCGT 59.679 39.130 0.00 0.00 35.80 3.85
629 630 3.911868 TCAAAGCCCATTCATTTGTTCG 58.088 40.909 0.00 0.00 35.80 3.95
630 631 5.540911 TCTTCAAAGCCCATTCATTTGTTC 58.459 37.500 0.00 0.00 35.80 3.18
631 632 5.549742 TCTTCAAAGCCCATTCATTTGTT 57.450 34.783 0.00 0.00 35.80 2.83
632 633 5.750352 ATCTTCAAAGCCCATTCATTTGT 57.250 34.783 0.00 0.00 35.80 2.83
633 634 6.632909 TGTATCTTCAAAGCCCATTCATTTG 58.367 36.000 0.00 0.00 35.68 2.32
634 635 6.855763 TGTATCTTCAAAGCCCATTCATTT 57.144 33.333 0.00 0.00 0.00 2.32
635 636 6.351286 GGTTGTATCTTCAAAGCCCATTCATT 60.351 38.462 0.00 0.00 0.00 2.57
636 637 5.127682 GGTTGTATCTTCAAAGCCCATTCAT 59.872 40.000 0.00 0.00 0.00 2.57
637 638 4.462483 GGTTGTATCTTCAAAGCCCATTCA 59.538 41.667 0.00 0.00 0.00 2.57
638 639 4.142160 GGGTTGTATCTTCAAAGCCCATTC 60.142 45.833 0.00 0.00 35.21 2.67
639 640 3.769300 GGGTTGTATCTTCAAAGCCCATT 59.231 43.478 0.00 0.00 35.21 3.16
640 641 3.245586 TGGGTTGTATCTTCAAAGCCCAT 60.246 43.478 0.00 0.00 38.12 4.00
641 642 2.109128 TGGGTTGTATCTTCAAAGCCCA 59.891 45.455 0.00 0.00 39.60 5.36
642 643 2.755103 CTGGGTTGTATCTTCAAAGCCC 59.245 50.000 0.00 0.00 35.49 5.19
643 644 3.421844 ACTGGGTTGTATCTTCAAAGCC 58.578 45.455 0.00 0.00 0.00 4.35
644 645 5.705905 ACTAACTGGGTTGTATCTTCAAAGC 59.294 40.000 0.00 0.00 0.00 3.51
645 646 7.360101 CGAACTAACTGGGTTGTATCTTCAAAG 60.360 40.741 0.00 0.00 0.00 2.77
646 647 6.425721 CGAACTAACTGGGTTGTATCTTCAAA 59.574 38.462 0.00 0.00 0.00 2.69
647 648 5.929992 CGAACTAACTGGGTTGTATCTTCAA 59.070 40.000 0.00 0.00 0.00 2.69
648 649 5.475719 CGAACTAACTGGGTTGTATCTTCA 58.524 41.667 0.00 0.00 0.00 3.02
649 650 4.868734 CCGAACTAACTGGGTTGTATCTTC 59.131 45.833 0.00 0.00 0.00 2.87
650 651 4.285260 ACCGAACTAACTGGGTTGTATCTT 59.715 41.667 0.00 0.00 0.00 2.40
651 652 3.836562 ACCGAACTAACTGGGTTGTATCT 59.163 43.478 0.00 0.00 0.00 1.98
652 653 4.198028 ACCGAACTAACTGGGTTGTATC 57.802 45.455 0.00 0.00 0.00 2.24
653 654 4.382362 GCTACCGAACTAACTGGGTTGTAT 60.382 45.833 0.00 0.00 34.02 2.29
654 655 3.056607 GCTACCGAACTAACTGGGTTGTA 60.057 47.826 0.00 0.00 34.02 2.41
655 656 2.289257 GCTACCGAACTAACTGGGTTGT 60.289 50.000 0.00 0.00 34.02 3.32
656 657 2.344025 GCTACCGAACTAACTGGGTTG 58.656 52.381 0.00 0.00 34.02 3.77
657 658 1.067354 CGCTACCGAACTAACTGGGTT 60.067 52.381 0.00 0.00 36.29 4.11
658 659 0.529378 CGCTACCGAACTAACTGGGT 59.471 55.000 0.00 0.00 36.29 4.51
659 660 0.529378 ACGCTACCGAACTAACTGGG 59.471 55.000 0.00 0.00 38.29 4.45
660 661 2.789092 CGTACGCTACCGAACTAACTGG 60.789 54.545 0.52 0.00 38.29 4.00
661 662 2.434761 CGTACGCTACCGAACTAACTG 58.565 52.381 0.52 0.00 38.29 3.16
662 663 1.202076 GCGTACGCTACCGAACTAACT 60.202 52.381 31.95 0.00 38.26 2.24
663 664 1.183511 GCGTACGCTACCGAACTAAC 58.816 55.000 31.95 0.00 38.26 2.34
664 665 0.098728 GGCGTACGCTACCGAACTAA 59.901 55.000 36.24 0.00 41.60 2.24
665 666 1.024046 TGGCGTACGCTACCGAACTA 61.024 55.000 36.24 11.36 41.60 2.24
666 667 1.865788 TTGGCGTACGCTACCGAACT 61.866 55.000 36.24 0.00 41.60 3.01
667 668 1.408474 CTTGGCGTACGCTACCGAAC 61.408 60.000 36.24 20.02 41.60 3.95
668 669 1.153978 CTTGGCGTACGCTACCGAA 60.154 57.895 36.24 17.03 41.60 4.30
669 670 1.985447 CTCTTGGCGTACGCTACCGA 61.985 60.000 36.24 26.56 41.60 4.69
670 671 1.585521 CTCTTGGCGTACGCTACCG 60.586 63.158 36.24 24.17 41.60 4.02
671 672 0.525029 GTCTCTTGGCGTACGCTACC 60.525 60.000 36.24 22.14 41.60 3.18
672 673 0.169672 TGTCTCTTGGCGTACGCTAC 59.830 55.000 36.24 22.85 41.60 3.58
673 674 0.883153 TTGTCTCTTGGCGTACGCTA 59.117 50.000 36.24 30.29 41.60 4.26
674 675 0.032952 TTTGTCTCTTGGCGTACGCT 59.967 50.000 36.24 0.00 41.60 5.07
675 676 1.060698 GATTTGTCTCTTGGCGTACGC 59.939 52.381 31.54 31.54 41.06 4.42
676 677 1.320555 CGATTTGTCTCTTGGCGTACG 59.679 52.381 11.84 11.84 0.00 3.67
677 678 2.602878 TCGATTTGTCTCTTGGCGTAC 58.397 47.619 0.00 0.00 0.00 3.67
678 679 3.250744 CTTCGATTTGTCTCTTGGCGTA 58.749 45.455 0.00 0.00 0.00 4.42
679 680 2.069273 CTTCGATTTGTCTCTTGGCGT 58.931 47.619 0.00 0.00 0.00 5.68
680 681 1.201965 GCTTCGATTTGTCTCTTGGCG 60.202 52.381 0.00 0.00 0.00 5.69
681 682 1.806542 TGCTTCGATTTGTCTCTTGGC 59.193 47.619 0.00 0.00 0.00 4.52
682 683 2.160417 GGTGCTTCGATTTGTCTCTTGG 59.840 50.000 0.00 0.00 0.00 3.61
683 684 2.159787 CGGTGCTTCGATTTGTCTCTTG 60.160 50.000 0.00 0.00 0.00 3.02
684 685 2.069273 CGGTGCTTCGATTTGTCTCTT 58.931 47.619 0.00 0.00 0.00 2.85
685 686 1.272490 TCGGTGCTTCGATTTGTCTCT 59.728 47.619 0.00 0.00 33.92 3.10
686 687 1.710013 TCGGTGCTTCGATTTGTCTC 58.290 50.000 0.00 0.00 33.92 3.36
687 688 2.069273 CTTCGGTGCTTCGATTTGTCT 58.931 47.619 3.12 0.00 39.03 3.41
688 689 2.066262 TCTTCGGTGCTTCGATTTGTC 58.934 47.619 3.12 0.00 39.03 3.18
689 690 2.069273 CTCTTCGGTGCTTCGATTTGT 58.931 47.619 3.12 0.00 39.03 2.83
690 691 1.201965 GCTCTTCGGTGCTTCGATTTG 60.202 52.381 3.12 0.00 39.03 2.32
691 692 1.079503 GCTCTTCGGTGCTTCGATTT 58.920 50.000 3.12 0.00 39.03 2.17
692 693 0.037326 TGCTCTTCGGTGCTTCGATT 60.037 50.000 3.12 0.00 39.03 3.34
693 694 0.037326 TTGCTCTTCGGTGCTTCGAT 60.037 50.000 3.12 0.00 39.03 3.59
694 695 0.037326 ATTGCTCTTCGGTGCTTCGA 60.037 50.000 0.00 0.00 37.38 3.71
695 696 0.798776 AATTGCTCTTCGGTGCTTCG 59.201 50.000 0.00 0.00 35.70 3.79
696 697 2.997485 AAATTGCTCTTCGGTGCTTC 57.003 45.000 0.00 0.00 35.70 3.86
735 736 6.616947 CGCCACCTATAAATTCACTCAAAAA 58.383 36.000 0.00 0.00 0.00 1.94
835 1162 4.555262 CACGATTTGGTTAAATGCAAGGT 58.445 39.130 0.00 0.00 36.66 3.50
874 1201 0.236187 GTGGAAATGCAACACGCGTA 59.764 50.000 13.44 0.00 46.97 4.42
882 1209 0.871722 CGGAGAACGTGGAAATGCAA 59.128 50.000 0.00 0.00 37.93 4.08
1344 1672 3.199891 GTAACGGCGGCCATGGAC 61.200 66.667 18.40 13.35 0.00 4.02
1721 2049 0.463295 CATGCCATTCGCTGTCTCCT 60.463 55.000 0.00 0.00 38.78 3.69
2029 2364 5.944007 AGAACAAACGCTTAAGGTAATCCAT 59.056 36.000 4.29 0.00 35.89 3.41
2030 2365 5.180492 CAGAACAAACGCTTAAGGTAATCCA 59.820 40.000 4.29 0.00 35.89 3.41
2031 2366 5.410439 TCAGAACAAACGCTTAAGGTAATCC 59.590 40.000 4.29 0.00 0.00 3.01
2324 2933 5.933463 CACCAACTTTGCAAATGTAATGGAT 59.067 36.000 24.14 13.95 35.18 3.41
2368 2977 8.946085 GTGAAAGAAAGTGGTTATGTGATGATA 58.054 33.333 0.00 0.00 0.00 2.15
2380 2989 4.884164 CAGGAAAGAGTGAAAGAAAGTGGT 59.116 41.667 0.00 0.00 0.00 4.16
2421 3030 1.075536 CCTACAAACCAAAGGAGGCCT 59.924 52.381 3.86 3.86 33.87 5.19
2422 3031 1.074889 TCCTACAAACCAAAGGAGGCC 59.925 52.381 0.00 0.00 34.46 5.19
2423 3032 2.579410 TCCTACAAACCAAAGGAGGC 57.421 50.000 0.00 0.00 34.46 4.70
2424 3033 6.183360 ACAAAATTCCTACAAACCAAAGGAGG 60.183 38.462 0.00 0.00 40.43 4.30
2425 3034 6.816136 ACAAAATTCCTACAAACCAAAGGAG 58.184 36.000 0.00 0.00 40.43 3.69
2426 3035 6.800072 ACAAAATTCCTACAAACCAAAGGA 57.200 33.333 0.00 0.00 37.64 3.36
2427 3036 8.201464 AGTTACAAAATTCCTACAAACCAAAGG 58.799 33.333 0.00 0.00 0.00 3.11
2428 3037 9.030301 CAGTTACAAAATTCCTACAAACCAAAG 57.970 33.333 0.00 0.00 0.00 2.77
2429 3038 7.492994 GCAGTTACAAAATTCCTACAAACCAAA 59.507 33.333 0.00 0.00 0.00 3.28
2430 3039 6.981559 GCAGTTACAAAATTCCTACAAACCAA 59.018 34.615 0.00 0.00 0.00 3.67
2431 3040 6.322712 AGCAGTTACAAAATTCCTACAAACCA 59.677 34.615 0.00 0.00 0.00 3.67
2432 3041 6.745116 AGCAGTTACAAAATTCCTACAAACC 58.255 36.000 0.00 0.00 0.00 3.27
2433 3042 9.394477 CTTAGCAGTTACAAAATTCCTACAAAC 57.606 33.333 0.00 0.00 0.00 2.93
2434 3043 9.127277 ACTTAGCAGTTACAAAATTCCTACAAA 57.873 29.630 0.00 0.00 0.00 2.83
2435 3044 8.685838 ACTTAGCAGTTACAAAATTCCTACAA 57.314 30.769 0.00 0.00 0.00 2.41
2436 3045 8.685838 AACTTAGCAGTTACAAAATTCCTACA 57.314 30.769 0.00 0.00 41.81 2.74
2437 3046 8.780249 TGAACTTAGCAGTTACAAAATTCCTAC 58.220 33.333 0.00 0.00 43.79 3.18
2438 3047 8.911918 TGAACTTAGCAGTTACAAAATTCCTA 57.088 30.769 0.00 0.00 43.79 2.94
2439 3048 7.817418 TGAACTTAGCAGTTACAAAATTCCT 57.183 32.000 0.00 0.00 43.79 3.36
2440 3049 8.865590 TTTGAACTTAGCAGTTACAAAATTCC 57.134 30.769 9.78 0.00 43.79 3.01
2446 3055 9.906660 CCAATATTTTGAACTTAGCAGTTACAA 57.093 29.630 0.00 0.00 43.79 2.41
2447 3056 8.519526 CCCAATATTTTGAACTTAGCAGTTACA 58.480 33.333 0.00 0.00 43.79 2.41
2448 3057 8.520351 ACCCAATATTTTGAACTTAGCAGTTAC 58.480 33.333 0.00 0.00 43.79 2.50
2449 3058 8.644374 ACCCAATATTTTGAACTTAGCAGTTA 57.356 30.769 0.00 0.00 43.79 2.24
2450 3059 7.539034 ACCCAATATTTTGAACTTAGCAGTT 57.461 32.000 0.00 0.00 46.64 3.16
2491 3100 9.601217 GATTTGTACAGTTTCAGGAGTATGTAT 57.399 33.333 0.00 0.00 0.00 2.29
2492 3101 8.038944 GGATTTGTACAGTTTCAGGAGTATGTA 58.961 37.037 0.00 0.00 0.00 2.29
2493 3102 6.879458 GGATTTGTACAGTTTCAGGAGTATGT 59.121 38.462 0.00 0.00 0.00 2.29
2494 3103 6.878923 TGGATTTGTACAGTTTCAGGAGTATG 59.121 38.462 0.00 0.00 0.00 2.39
2503 3112 4.278419 AGGTGCTTGGATTTGTACAGTTTC 59.722 41.667 0.00 0.00 0.00 2.78
2587 3196 7.040062 ACGGATTGTTTGAATAGTTCATCCAAA 60.040 33.333 8.94 0.00 39.84 3.28
2588 3197 6.432783 ACGGATTGTTTGAATAGTTCATCCAA 59.567 34.615 8.94 7.89 39.84 3.53
2593 3203 5.411361 CAGGACGGATTGTTTGAATAGTTCA 59.589 40.000 0.00 0.00 38.04 3.18
2698 3308 3.128589 CGTTAACACAATGCCCAGCTTAT 59.871 43.478 6.39 0.00 0.00 1.73
2710 3320 8.428186 AAGATACAGAAAAGACGTTAACACAA 57.572 30.769 6.39 0.00 0.00 3.33
2859 3470 5.716228 AGGCAATGGTCATAGAACAAATTCA 59.284 36.000 0.00 0.00 37.29 2.57
2897 3508 4.021368 AGTTAAAAGTCTTCGCTGCCTAGA 60.021 41.667 0.00 0.00 0.00 2.43
2903 3514 5.694910 TGGTAAGAGTTAAAAGTCTTCGCTG 59.305 40.000 14.50 0.00 43.37 5.18
3202 3815 2.549992 GCCAGTGTCAGTGTGGTATTCA 60.550 50.000 6.91 0.00 33.51 2.57
3243 3856 2.847327 AGCAAGTTCTTCTGCTAGCA 57.153 45.000 18.22 18.22 35.68 3.49
3260 3876 7.948278 TCAACTTACTTAAGACAGAAGAAGC 57.052 36.000 10.09 0.00 37.08 3.86
3283 3899 7.224167 CCTTCGGTTATATGGTGTTCTAACTTC 59.776 40.741 0.00 0.00 0.00 3.01
3612 4231 5.124617 TGTGCGGCATCAAATGTTAAGAATA 59.875 36.000 5.72 0.00 0.00 1.75
3706 4325 7.955918 ACTGAAATAGTTCAAATGAAGGCTTT 58.044 30.769 7.08 0.00 43.18 3.51
3755 4382 5.565592 TTGCATAGCAAAGTATGGAAGTG 57.434 39.130 1.36 0.00 45.96 3.16
3785 4412 4.035909 GGAAACGTCGGGTTATATTGCATT 59.964 41.667 0.00 0.00 38.08 3.56
3798 4425 2.427232 TCAGTACAAGGAAACGTCGG 57.573 50.000 0.00 0.00 0.00 4.79
3802 4429 6.533819 TTACAACATCAGTACAAGGAAACG 57.466 37.500 0.00 0.00 0.00 3.60
3803 4430 8.403236 AGTTTTACAACATCAGTACAAGGAAAC 58.597 33.333 0.00 0.00 35.05 2.78
3808 4435 8.436200 GCTAGAGTTTTACAACATCAGTACAAG 58.564 37.037 0.00 0.00 35.05 3.16
3809 4436 8.148351 AGCTAGAGTTTTACAACATCAGTACAA 58.852 33.333 0.00 0.00 35.05 2.41
3901 4528 4.669206 TCCATCAAAACAATTGTGCAGT 57.331 36.364 12.82 0.00 0.00 4.40
3925 4552 6.244552 TCACATAAAAGGCTCAGATCTGAT 57.755 37.500 25.30 12.23 39.13 2.90
3995 4627 2.668457 CGTGACCTTGCAGAATGAGTAC 59.332 50.000 0.00 0.00 39.69 2.73
4000 4632 1.725641 TAGCGTGACCTTGCAGAATG 58.274 50.000 0.00 0.00 40.87 2.67
4016 4648 8.814931 AGATATGGCAAGGATATAGATGATAGC 58.185 37.037 0.00 0.00 0.00 2.97
4021 4653 8.255111 TGGTAGATATGGCAAGGATATAGATG 57.745 38.462 0.00 0.00 0.00 2.90
4022 4654 7.512058 CCTGGTAGATATGGCAAGGATATAGAT 59.488 40.741 0.00 0.00 0.00 1.98
4039 4671 4.851639 AAGCTTGAACATCCTGGTAGAT 57.148 40.909 0.00 0.00 0.00 1.98
4047 4679 3.445096 AGCATGGTAAAGCTTGAACATCC 59.555 43.478 11.76 2.56 38.01 3.51
4189 4828 2.146342 CCAACAAGACATGAGTTCGCT 58.854 47.619 0.00 0.00 0.00 4.93
4223 4862 5.666462 TGCCATAGCTTTCGTAATTACTCA 58.334 37.500 13.56 0.00 40.80 3.41
4227 4866 6.346096 AGACTTGCCATAGCTTTCGTAATTA 58.654 36.000 0.00 0.00 40.80 1.40
4238 4877 5.573337 AAAATGAGAAGACTTGCCATAGC 57.427 39.130 0.00 0.00 40.48 2.97
4276 4915 1.723220 CTGATGCCTGACAGTGAGTG 58.277 55.000 0.00 0.00 0.00 3.51
4288 4929 7.442364 TCTTATGAGTAAAACATAGCTGATGCC 59.558 37.037 0.00 0.00 39.39 4.40
4312 4955 9.066892 TCTTCACTAAAGCAATAAACATGTTCT 57.933 29.630 12.39 0.86 34.76 3.01
4326 4969 5.880341 ACGGCAAAATATCTTCACTAAAGC 58.120 37.500 0.00 0.00 34.76 3.51
4337 4980 5.400485 GCAGATGATCAAACGGCAAAATATC 59.600 40.000 17.84 1.03 0.00 1.63
4347 4990 4.391216 AGAAAGTCTGCAGATGATCAAACG 59.609 41.667 21.47 0.00 0.00 3.60
4387 5032 8.492748 TCGATTTCTTGTTACAAGTACAATCAC 58.507 33.333 26.62 14.67 35.18 3.06
4438 5083 6.535150 CCGAGTGTCATTACAATGAGTACAAT 59.465 38.462 15.85 7.88 45.38 2.71
4439 5084 5.867174 CCGAGTGTCATTACAATGAGTACAA 59.133 40.000 15.85 0.00 45.38 2.41
4440 5085 5.047590 ACCGAGTGTCATTACAATGAGTACA 60.048 40.000 15.85 6.50 45.38 2.90
4441 5086 5.408356 ACCGAGTGTCATTACAATGAGTAC 58.592 41.667 4.89 7.73 45.38 2.73
4654 5413 3.776969 TGAGAGGGCATAGACAGATGTTT 59.223 43.478 0.00 0.00 0.00 2.83
4804 5563 5.364778 TCTGGTGATTCTTTCTCAAAACGA 58.635 37.500 0.00 0.00 0.00 3.85
4858 5617 4.832248 TCCAGAAGACGCTCATTACAAAT 58.168 39.130 0.00 0.00 0.00 2.32
4990 5749 2.815503 CACATCAGCAACAAGATCACCA 59.184 45.455 0.00 0.00 0.00 4.17
5307 6066 8.320617 AGAAAATATATCATCCAGAAGAGCTCC 58.679 37.037 10.93 0.00 0.00 4.70
5361 6120 8.106247 ACAGAAATGTCAAACAATTACCGTAT 57.894 30.769 0.00 0.00 0.00 3.06
5459 6222 3.877559 CCTGGCACTTGATGAACAGATA 58.122 45.455 0.00 0.00 37.13 1.98
5477 6240 7.445096 TCATTGATGTAAATACTACATGGCCTG 59.555 37.037 3.32 2.01 38.18 4.85
5641 6408 7.329499 TGTAACTGTTTTACCTGTGTCTTGTA 58.671 34.615 0.00 0.00 0.00 2.41
5780 6551 8.537858 AGATTACGAGGAATAGTTTACAAGGTT 58.462 33.333 0.00 0.00 0.00 3.50
5821 6592 6.825721 ACTACCCATGCTCTAGATTTTCAAAG 59.174 38.462 0.00 0.00 0.00 2.77
5822 6593 6.721318 ACTACCCATGCTCTAGATTTTCAAA 58.279 36.000 0.00 0.00 0.00 2.69
5823 6594 6.313519 ACTACCCATGCTCTAGATTTTCAA 57.686 37.500 0.00 0.00 0.00 2.69
5825 6596 5.463724 CGAACTACCCATGCTCTAGATTTTC 59.536 44.000 0.00 0.00 0.00 2.29
5880 6739 2.489938 AGCTCGATAAAACTTGCCCA 57.510 45.000 0.00 0.00 0.00 5.36
5892 6751 8.994429 AGATCGAAAATAATCAATAGCTCGAT 57.006 30.769 3.52 3.52 38.94 3.59
5961 6982 3.054361 ACCATCGGCTTCTTCTAAATGGT 60.054 43.478 0.00 0.00 40.32 3.55
5967 6988 1.555075 AGCAACCATCGGCTTCTTCTA 59.445 47.619 0.00 0.00 36.92 2.10
6109 7134 9.575783 TTGTTTTTGTAGACAATGTACTTTTCC 57.424 29.630 0.00 0.00 35.55 3.13
6135 7160 4.339530 ACAGCTAGTGATGTACGATGATGT 59.660 41.667 0.00 0.00 41.43 3.06
6152 7177 4.435436 CGGCCGTGAGCACAGCTA 62.435 66.667 19.50 0.00 46.50 3.32
6212 7237 0.466189 CGGTCTAATGCAATGGGGCT 60.466 55.000 0.00 0.00 34.04 5.19
6242 7268 3.131396 GGCGTCGATAAGGTCATCAAAT 58.869 45.455 0.00 0.00 0.00 2.32
6255 7951 1.021202 CTTCTCTCTCTGGCGTCGAT 58.979 55.000 0.00 0.00 0.00 3.59
6289 8000 1.375908 GCGGCACATTCACTCCTCA 60.376 57.895 0.00 0.00 0.00 3.86
6316 8029 1.272490 GTCATGTTGGTCGTCCTCTCA 59.728 52.381 0.00 0.00 34.23 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.