Multiple sequence alignment - TraesCS5D01G138100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G138100 chr5D 100.000 4105 0 0 1 4105 220096285 220100389 0.000000e+00 7581.0
1 TraesCS5D01G138100 chr5A 94.499 3799 150 26 359 4105 293863902 293867693 0.000000e+00 5803.0
2 TraesCS5D01G138100 chr5A 78.711 512 82 20 3601 4105 291935089 291934598 2.380000e-82 316.0
3 TraesCS5D01G138100 chr5B 96.865 2392 60 4 507 2884 242543017 242545407 0.000000e+00 3988.0
4 TraesCS5D01G138100 chr5B 96.515 1033 21 3 1909 2926 239160752 239159720 0.000000e+00 1694.0
5 TraesCS5D01G138100 chr5B 94.198 586 31 3 3522 4105 239157477 239156893 0.000000e+00 891.0
6 TraesCS5D01G138100 chr5B 91.506 624 50 2 2994 3617 242545757 242546377 0.000000e+00 856.0
7 TraesCS5D01G138100 chr5B 90.625 544 48 1 2994 3537 239159078 239158538 0.000000e+00 719.0
8 TraesCS5D01G138100 chr5B 95.056 445 11 3 790 1226 239171658 239171217 0.000000e+00 689.0
9 TraesCS5D01G138100 chr5B 93.289 447 28 2 3660 4105 242546713 242547158 0.000000e+00 658.0
10 TraesCS5D01G138100 chr5B 79.317 498 98 5 3612 4105 241524764 241524268 1.090000e-90 344.0
11 TraesCS5D01G138100 chr5B 98.315 178 3 0 622 799 239173139 239172962 3.080000e-81 313.0
12 TraesCS5D01G138100 chr5B 91.515 165 12 2 467 630 239177022 239176859 4.130000e-55 226.0
13 TraesCS5D01G138100 chr7A 81.373 510 81 11 3600 4105 121936358 121936857 1.780000e-108 403.0
14 TraesCS5D01G138100 chr7A 77.184 412 65 23 3154 3557 11280480 11280090 3.210000e-51 213.0
15 TraesCS5D01G138100 chr2B 77.804 428 78 12 3130 3554 537842044 537842457 8.810000e-62 248.0
16 TraesCS5D01G138100 chr2B 83.036 112 19 0 3994 4105 762360050 762359939 7.260000e-18 102.0
17 TraesCS5D01G138100 chr7D 77.283 427 80 12 3130 3554 71821654 71821243 6.860000e-58 235.0
18 TraesCS5D01G138100 chr6B 91.892 111 9 0 1264 1374 693942117 693942007 5.490000e-34 156.0
19 TraesCS5D01G138100 chr6B 90.517 116 11 0 1259 1374 18228892 18229007 1.980000e-33 154.0
20 TraesCS5D01G138100 chr2A 77.311 238 48 6 3870 4105 675074731 675074964 7.160000e-28 135.0
21 TraesCS5D01G138100 chr4D 90.291 103 9 1 1268 1369 493333010 493333112 2.570000e-27 134.0
22 TraesCS5D01G138100 chr3D 78.325 203 37 6 3601 3797 545776663 545776462 1.550000e-24 124.0
23 TraesCS5D01G138100 chr3D 100.000 32 0 0 1177 1208 182606068 182606037 4.430000e-05 60.2
24 TraesCS5D01G138100 chr2D 88.060 67 8 0 3601 3667 73459498 73459564 3.400000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G138100 chr5D 220096285 220100389 4104 False 7581.000000 7581 100.000000 1 4105 1 chr5D.!!$F1 4104
1 TraesCS5D01G138100 chr5A 293863902 293867693 3791 False 5803.000000 5803 94.499000 359 4105 1 chr5A.!!$F1 3746
2 TraesCS5D01G138100 chr5B 242543017 242547158 4141 False 1834.000000 3988 93.886667 507 4105 3 chr5B.!!$F1 3598
3 TraesCS5D01G138100 chr5B 239156893 239160752 3859 True 1101.333333 1694 93.779333 1909 4105 3 chr5B.!!$R2 2196
4 TraesCS5D01G138100 chr5B 239171217 239177022 5805 True 409.333333 689 94.962000 467 1226 3 chr5B.!!$R3 759

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
459 461 0.035439 ATGCCGGTTCGTGGAGATTT 60.035 50.000 1.9 0.0 0.0 2.17 F
909 5962 0.185175 GGTTTCAACTCCCACCACCT 59.815 55.000 0.0 0.0 0.0 4.00 F
1823 6903 1.289380 GAGCAACTCCTTCGTCGGT 59.711 57.895 0.0 0.0 0.0 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1733 6813 1.250154 TGGCGATTTTCTTGGGCTGG 61.250 55.0 0.00 0.0 0.00 4.85 R
2589 7678 0.251354 ACAAGCAGCTCGATGATGGT 59.749 50.0 0.00 0.0 45.29 3.55 R
3770 10849 0.036732 TGAGATTGGCAACCTCGCTT 59.963 50.0 16.62 0.0 0.00 4.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.855596 GCTTTTGCTCCTCTTGCG 57.144 55.556 0.00 0.00 43.35 4.85
24 25 1.211190 GCTTTTGCTCCTCTTGCGG 59.789 57.895 0.00 0.00 43.35 5.69
25 26 1.211190 CTTTTGCTCCTCTTGCGGC 59.789 57.895 0.00 0.00 0.00 6.53
26 27 1.518056 CTTTTGCTCCTCTTGCGGCA 61.518 55.000 0.00 0.00 0.00 5.69
27 28 0.895100 TTTTGCTCCTCTTGCGGCAT 60.895 50.000 2.28 0.00 34.59 4.40
28 29 1.588824 TTTGCTCCTCTTGCGGCATG 61.589 55.000 2.28 6.50 34.59 4.06
29 30 3.885521 GCTCCTCTTGCGGCATGC 61.886 66.667 9.90 9.90 46.70 4.06
45 46 2.315925 ATGCAGAACATGTAGTCCGG 57.684 50.000 0.00 0.00 37.70 5.14
46 47 0.973632 TGCAGAACATGTAGTCCGGT 59.026 50.000 0.00 0.00 0.00 5.28
47 48 1.337728 TGCAGAACATGTAGTCCGGTG 60.338 52.381 0.00 0.00 0.00 4.94
48 49 1.067142 GCAGAACATGTAGTCCGGTGA 60.067 52.381 0.00 0.00 0.00 4.02
49 50 2.607187 CAGAACATGTAGTCCGGTGAC 58.393 52.381 0.00 0.00 42.09 3.67
68 69 4.711949 CAGGCTGCTCCGGTTGCT 62.712 66.667 19.31 1.02 40.77 3.91
69 70 4.400961 AGGCTGCTCCGGTTGCTC 62.401 66.667 19.31 12.47 40.77 4.26
71 72 4.400961 GCTGCTCCGGTTGCTCCT 62.401 66.667 19.31 0.00 0.00 3.69
72 73 2.125350 CTGCTCCGGTTGCTCCTC 60.125 66.667 19.31 0.00 0.00 3.71
73 74 3.672295 CTGCTCCGGTTGCTCCTCC 62.672 68.421 19.31 0.00 0.00 4.30
74 75 4.821589 GCTCCGGTTGCTCCTCCG 62.822 72.222 13.37 0.00 45.42 4.63
75 76 4.821589 CTCCGGTTGCTCCTCCGC 62.822 72.222 0.00 0.00 44.63 5.54
78 79 4.473520 CGGTTGCTCCTCCGCCAT 62.474 66.667 0.00 0.00 40.28 4.40
79 80 2.044946 GGTTGCTCCTCCGCCATT 60.045 61.111 0.00 0.00 0.00 3.16
80 81 1.223487 GGTTGCTCCTCCGCCATTA 59.777 57.895 0.00 0.00 0.00 1.90
81 82 1.095807 GGTTGCTCCTCCGCCATTAC 61.096 60.000 0.00 0.00 0.00 1.89
82 83 1.153449 TTGCTCCTCCGCCATTACG 60.153 57.895 0.00 0.00 0.00 3.18
93 94 2.677971 CCATTACGGCCTCGAAGTG 58.322 57.895 0.00 0.00 40.11 3.16
94 95 1.429148 CCATTACGGCCTCGAAGTGC 61.429 60.000 0.00 0.00 40.11 4.40
95 96 0.739462 CATTACGGCCTCGAAGTGCA 60.739 55.000 0.00 0.00 40.11 4.57
96 97 0.739813 ATTACGGCCTCGAAGTGCAC 60.740 55.000 9.40 9.40 40.11 4.57
97 98 2.775032 TTACGGCCTCGAAGTGCACC 62.775 60.000 14.63 0.00 40.11 5.01
98 99 4.379243 CGGCCTCGAAGTGCACCT 62.379 66.667 14.63 0.00 39.00 4.00
99 100 2.743928 GGCCTCGAAGTGCACCTG 60.744 66.667 14.63 3.49 0.00 4.00
100 101 3.426568 GCCTCGAAGTGCACCTGC 61.427 66.667 14.63 3.66 42.50 4.85
101 102 3.114616 CCTCGAAGTGCACCTGCG 61.115 66.667 14.63 14.84 44.22 5.18
111 112 4.435436 CACCTGCGCGCTAGGTCA 62.435 66.667 36.15 17.32 45.19 4.02
112 113 3.461773 ACCTGCGCGCTAGGTCAT 61.462 61.111 34.50 20.91 45.19 3.06
113 114 2.963854 CCTGCGCGCTAGGTCATG 60.964 66.667 33.29 10.44 0.00 3.07
114 115 2.963854 CTGCGCGCTAGGTCATGG 60.964 66.667 33.29 6.90 0.00 3.66
115 116 3.723235 CTGCGCGCTAGGTCATGGT 62.723 63.158 33.29 0.00 0.00 3.55
116 117 3.264897 GCGCGCTAGGTCATGGTG 61.265 66.667 26.67 0.00 0.00 4.17
117 118 2.494445 CGCGCTAGGTCATGGTGA 59.506 61.111 5.56 0.00 0.00 4.02
118 119 1.153647 CGCGCTAGGTCATGGTGAA 60.154 57.895 5.56 0.00 0.00 3.18
119 120 1.148157 CGCGCTAGGTCATGGTGAAG 61.148 60.000 5.56 0.00 0.00 3.02
120 121 1.432270 GCGCTAGGTCATGGTGAAGC 61.432 60.000 0.00 0.00 0.00 3.86
121 122 0.811616 CGCTAGGTCATGGTGAAGCC 60.812 60.000 0.00 0.00 37.90 4.35
129 130 3.834726 TGGTGAAGCCAACAACCG 58.165 55.556 0.00 0.00 45.94 4.44
130 131 1.826054 TGGTGAAGCCAACAACCGG 60.826 57.895 0.00 0.00 45.94 5.28
131 132 1.527380 GGTGAAGCCAACAACCGGA 60.527 57.895 9.46 0.00 37.17 5.14
132 133 1.515521 GGTGAAGCCAACAACCGGAG 61.516 60.000 9.46 1.96 37.17 4.63
133 134 1.896660 TGAAGCCAACAACCGGAGC 60.897 57.895 9.46 0.31 0.00 4.70
134 135 2.966309 GAAGCCAACAACCGGAGCG 61.966 63.158 9.46 0.00 0.00 5.03
156 157 2.885644 CGGGCTCGTTGTCGGATG 60.886 66.667 0.00 0.00 37.69 3.51
157 158 3.195698 GGGCTCGTTGTCGGATGC 61.196 66.667 0.00 0.00 37.69 3.91
158 159 3.195698 GGCTCGTTGTCGGATGCC 61.196 66.667 0.00 0.00 39.37 4.40
159 160 2.125512 GCTCGTTGTCGGATGCCT 60.126 61.111 0.00 0.00 37.69 4.75
160 161 2.167861 GCTCGTTGTCGGATGCCTC 61.168 63.158 0.00 0.00 37.69 4.70
161 162 1.519455 CTCGTTGTCGGATGCCTCC 60.519 63.158 0.00 0.00 38.29 4.30
162 163 1.949847 CTCGTTGTCGGATGCCTCCT 61.950 60.000 6.46 0.00 39.65 3.69
163 164 1.519455 CGTTGTCGGATGCCTCCTC 60.519 63.158 6.46 0.45 39.65 3.71
164 165 1.153349 GTTGTCGGATGCCTCCTCC 60.153 63.158 6.46 0.00 39.65 4.30
165 166 1.612146 TTGTCGGATGCCTCCTCCA 60.612 57.895 6.46 0.00 39.65 3.86
166 167 0.982852 TTGTCGGATGCCTCCTCCAT 60.983 55.000 6.46 0.00 39.65 3.41
167 168 1.369321 GTCGGATGCCTCCTCCATC 59.631 63.158 6.46 0.00 39.65 3.51
168 169 2.203082 TCGGATGCCTCCTCCATCG 61.203 63.158 6.46 0.00 39.92 3.84
169 170 2.502492 CGGATGCCTCCTCCATCGT 61.502 63.158 6.46 0.00 39.92 3.73
170 171 1.070445 GGATGCCTCCTCCATCGTG 59.930 63.158 0.00 0.00 39.92 4.35
171 172 1.690219 GGATGCCTCCTCCATCGTGT 61.690 60.000 0.00 0.00 39.92 4.49
172 173 0.531532 GATGCCTCCTCCATCGTGTG 60.532 60.000 0.00 0.00 30.88 3.82
173 174 0.977627 ATGCCTCCTCCATCGTGTGA 60.978 55.000 0.00 0.00 0.00 3.58
174 175 1.142748 GCCTCCTCCATCGTGTGAG 59.857 63.158 0.00 0.00 0.00 3.51
175 176 1.142748 CCTCCTCCATCGTGTGAGC 59.857 63.158 0.00 0.00 0.00 4.26
176 177 1.142748 CTCCTCCATCGTGTGAGCC 59.857 63.158 0.00 0.00 0.00 4.70
177 178 1.305297 TCCTCCATCGTGTGAGCCT 60.305 57.895 0.00 0.00 0.00 4.58
178 179 1.142748 CCTCCATCGTGTGAGCCTC 59.857 63.158 0.00 0.00 0.00 4.70
179 180 1.607801 CCTCCATCGTGTGAGCCTCA 61.608 60.000 0.00 0.00 0.00 3.86
181 182 1.448540 CCATCGTGTGAGCCTCACC 60.449 63.158 21.57 11.98 46.40 4.02
182 183 1.807165 CATCGTGTGAGCCTCACCG 60.807 63.158 21.57 21.78 46.40 4.94
183 184 3.006756 ATCGTGTGAGCCTCACCGG 62.007 63.158 25.11 16.81 46.40 5.28
199 200 3.736483 GGCAGTCCGGCATGTATG 58.264 61.111 0.00 0.00 40.76 2.39
200 201 1.153168 GGCAGTCCGGCATGTATGT 60.153 57.895 0.00 0.00 40.76 2.29
201 202 1.439353 GGCAGTCCGGCATGTATGTG 61.439 60.000 0.00 0.00 40.76 3.21
202 203 0.744414 GCAGTCCGGCATGTATGTGT 60.744 55.000 0.00 0.00 0.00 3.72
203 204 1.290203 CAGTCCGGCATGTATGTGTC 58.710 55.000 0.00 0.00 0.00 3.67
204 205 0.901827 AGTCCGGCATGTATGTGTCA 59.098 50.000 0.00 0.00 0.00 3.58
205 206 1.486310 AGTCCGGCATGTATGTGTCAT 59.514 47.619 0.00 0.00 0.00 3.06
206 207 1.599071 GTCCGGCATGTATGTGTCATG 59.401 52.381 0.00 0.00 43.58 3.07
217 218 3.005205 GTGTCATGCACAGTGGACA 57.995 52.632 13.27 4.90 46.91 4.02
218 219 1.527034 GTGTCATGCACAGTGGACAT 58.473 50.000 12.57 1.88 46.91 3.06
219 220 1.198408 GTGTCATGCACAGTGGACATG 59.802 52.381 17.21 17.21 46.91 3.21
220 221 1.202794 TGTCATGCACAGTGGACATGT 60.203 47.619 20.58 0.00 41.51 3.21
221 222 1.881973 GTCATGCACAGTGGACATGTT 59.118 47.619 20.58 0.00 41.51 2.71
222 223 3.073678 GTCATGCACAGTGGACATGTTA 58.926 45.455 20.58 6.33 41.51 2.41
223 224 3.125829 GTCATGCACAGTGGACATGTTAG 59.874 47.826 20.58 3.18 41.51 2.34
224 225 2.928801 TGCACAGTGGACATGTTAGT 57.071 45.000 0.00 0.00 0.00 2.24
225 226 2.766313 TGCACAGTGGACATGTTAGTC 58.234 47.619 0.00 0.00 37.80 2.59
226 227 2.103941 TGCACAGTGGACATGTTAGTCA 59.896 45.455 0.00 0.00 40.29 3.41
227 228 3.244526 TGCACAGTGGACATGTTAGTCAT 60.245 43.478 0.00 0.00 40.29 3.06
228 229 3.753272 GCACAGTGGACATGTTAGTCATT 59.247 43.478 0.00 0.00 40.29 2.57
229 230 4.216257 GCACAGTGGACATGTTAGTCATTT 59.784 41.667 0.00 0.00 40.29 2.32
230 231 5.692814 CACAGTGGACATGTTAGTCATTTG 58.307 41.667 0.00 3.38 40.29 2.32
231 232 4.216257 ACAGTGGACATGTTAGTCATTTGC 59.784 41.667 0.00 0.00 40.29 3.68
232 233 4.216042 CAGTGGACATGTTAGTCATTTGCA 59.784 41.667 0.00 0.00 40.29 4.08
233 234 5.012239 AGTGGACATGTTAGTCATTTGCAT 58.988 37.500 0.00 0.00 37.04 3.96
234 235 5.477984 AGTGGACATGTTAGTCATTTGCATT 59.522 36.000 0.00 0.00 37.04 3.56
235 236 6.658816 AGTGGACATGTTAGTCATTTGCATTA 59.341 34.615 0.00 0.00 37.04 1.90
236 237 6.968904 GTGGACATGTTAGTCATTTGCATTAG 59.031 38.462 0.00 0.00 37.04 1.73
237 238 6.658816 TGGACATGTTAGTCATTTGCATTAGT 59.341 34.615 0.00 0.00 40.29 2.24
238 239 7.148255 TGGACATGTTAGTCATTTGCATTAGTC 60.148 37.037 0.00 0.00 40.29 2.59
239 240 7.148255 GGACATGTTAGTCATTTGCATTAGTCA 60.148 37.037 0.00 0.00 40.29 3.41
240 241 8.284945 ACATGTTAGTCATTTGCATTAGTCAT 57.715 30.769 0.00 0.00 34.09 3.06
241 242 8.742777 ACATGTTAGTCATTTGCATTAGTCATT 58.257 29.630 0.00 0.00 34.09 2.57
242 243 9.577110 CATGTTAGTCATTTGCATTAGTCATTT 57.423 29.630 0.00 0.00 34.09 2.32
243 244 8.969121 TGTTAGTCATTTGCATTAGTCATTTG 57.031 30.769 0.00 0.00 0.00 2.32
244 245 7.541783 TGTTAGTCATTTGCATTAGTCATTTGC 59.458 33.333 0.00 0.00 36.91 3.68
245 246 6.028146 AGTCATTTGCATTAGTCATTTGCA 57.972 33.333 0.00 0.00 44.12 4.08
249 250 3.872511 TGCATTAGTCATTTGCAAGGG 57.127 42.857 0.00 0.00 42.95 3.95
250 251 2.094078 TGCATTAGTCATTTGCAAGGGC 60.094 45.455 0.00 0.00 42.95 5.19
251 252 2.739609 GCATTAGTCATTTGCAAGGGCC 60.740 50.000 0.00 0.00 40.13 5.80
252 253 2.300956 TTAGTCATTTGCAAGGGCCA 57.699 45.000 6.18 0.00 40.13 5.36
253 254 1.544724 TAGTCATTTGCAAGGGCCAC 58.455 50.000 6.18 0.00 40.13 5.01
254 255 1.187567 AGTCATTTGCAAGGGCCACC 61.188 55.000 6.18 0.00 40.13 4.61
255 256 1.152376 TCATTTGCAAGGGCCACCA 60.152 52.632 6.18 0.00 40.13 4.17
256 257 0.544833 TCATTTGCAAGGGCCACCAT 60.545 50.000 6.18 0.00 40.13 3.55
257 258 0.108041 CATTTGCAAGGGCCACCATC 60.108 55.000 6.18 0.00 40.13 3.51
258 259 0.252375 ATTTGCAAGGGCCACCATCT 60.252 50.000 6.18 0.00 40.13 2.90
259 260 0.899717 TTTGCAAGGGCCACCATCTC 60.900 55.000 6.18 0.00 40.13 2.75
260 261 2.825836 GCAAGGGCCACCATCTCG 60.826 66.667 6.18 0.00 40.13 4.04
261 262 2.671070 CAAGGGCCACCATCTCGT 59.329 61.111 6.18 0.00 40.13 4.18
262 263 1.746615 CAAGGGCCACCATCTCGTG 60.747 63.158 6.18 0.00 40.13 4.35
263 264 3.628646 AAGGGCCACCATCTCGTGC 62.629 63.158 6.18 0.00 40.13 5.34
264 265 4.101448 GGGCCACCATCTCGTGCT 62.101 66.667 4.39 0.00 36.50 4.40
265 266 2.045926 GGCCACCATCTCGTGCTT 60.046 61.111 0.00 0.00 32.10 3.91
266 267 1.220749 GGCCACCATCTCGTGCTTA 59.779 57.895 0.00 0.00 32.10 3.09
267 268 0.179045 GGCCACCATCTCGTGCTTAT 60.179 55.000 0.00 0.00 32.10 1.73
268 269 0.940126 GCCACCATCTCGTGCTTATG 59.060 55.000 0.00 0.00 32.10 1.90
269 270 0.940126 CCACCATCTCGTGCTTATGC 59.060 55.000 0.00 0.00 40.20 3.14
270 271 0.578683 CACCATCTCGTGCTTATGCG 59.421 55.000 0.00 0.00 43.34 4.73
271 272 1.154205 ACCATCTCGTGCTTATGCGC 61.154 55.000 0.00 0.00 45.43 6.09
272 273 1.566563 CATCTCGTGCTTATGCGCC 59.433 57.895 4.18 0.00 46.08 6.53
273 274 1.951130 ATCTCGTGCTTATGCGCCG 60.951 57.895 4.18 0.00 46.08 6.46
274 275 2.349969 ATCTCGTGCTTATGCGCCGA 62.350 55.000 4.18 3.37 46.08 5.54
275 276 2.860628 CTCGTGCTTATGCGCCGAC 61.861 63.158 4.18 0.00 46.08 4.79
276 277 3.185365 CGTGCTTATGCGCCGACA 61.185 61.111 4.18 0.00 46.08 4.35
277 278 2.735677 CGTGCTTATGCGCCGACAA 61.736 57.895 4.18 0.00 46.08 3.18
278 279 1.060937 GTGCTTATGCGCCGACAAG 59.939 57.895 4.18 3.92 43.34 3.16
279 280 1.079474 TGCTTATGCGCCGACAAGA 60.079 52.632 4.18 0.00 43.34 3.02
280 281 1.083806 TGCTTATGCGCCGACAAGAG 61.084 55.000 4.18 0.00 43.34 2.85
281 282 1.638467 CTTATGCGCCGACAAGAGC 59.362 57.895 4.18 0.00 0.00 4.09
282 283 1.766143 CTTATGCGCCGACAAGAGCC 61.766 60.000 4.18 0.00 0.00 4.70
287 288 3.491652 GCCGACAAGAGCCGCTTC 61.492 66.667 0.00 0.00 33.60 3.86
288 289 2.815647 CCGACAAGAGCCGCTTCC 60.816 66.667 0.00 0.00 33.60 3.46
289 290 2.048222 CGACAAGAGCCGCTTCCA 60.048 61.111 0.00 0.00 33.60 3.53
290 291 2.383527 CGACAAGAGCCGCTTCCAC 61.384 63.158 0.00 0.00 33.60 4.02
291 292 1.301716 GACAAGAGCCGCTTCCACA 60.302 57.895 0.00 0.00 33.60 4.17
292 293 0.674895 GACAAGAGCCGCTTCCACAT 60.675 55.000 0.00 0.00 33.60 3.21
293 294 0.250901 ACAAGAGCCGCTTCCACATT 60.251 50.000 0.00 0.00 33.60 2.71
294 295 0.883833 CAAGAGCCGCTTCCACATTT 59.116 50.000 0.00 0.00 33.60 2.32
295 296 1.135575 CAAGAGCCGCTTCCACATTTC 60.136 52.381 0.00 0.00 33.60 2.17
296 297 0.036732 AGAGCCGCTTCCACATTTCA 59.963 50.000 0.00 0.00 0.00 2.69
297 298 1.098050 GAGCCGCTTCCACATTTCAT 58.902 50.000 0.00 0.00 0.00 2.57
298 299 1.064654 GAGCCGCTTCCACATTTCATC 59.935 52.381 0.00 0.00 0.00 2.92
299 300 0.248215 GCCGCTTCCACATTTCATCG 60.248 55.000 0.00 0.00 0.00 3.84
300 301 1.368641 CCGCTTCCACATTTCATCGA 58.631 50.000 0.00 0.00 0.00 3.59
301 302 1.062587 CCGCTTCCACATTTCATCGAC 59.937 52.381 0.00 0.00 0.00 4.20
302 303 1.267038 CGCTTCCACATTTCATCGACG 60.267 52.381 0.00 0.00 0.00 5.12
303 304 1.529826 GCTTCCACATTTCATCGACGC 60.530 52.381 0.00 0.00 0.00 5.19
304 305 2.002586 CTTCCACATTTCATCGACGCT 58.997 47.619 0.00 0.00 0.00 5.07
305 306 2.093306 TCCACATTTCATCGACGCTT 57.907 45.000 0.00 0.00 0.00 4.68
306 307 1.731709 TCCACATTTCATCGACGCTTG 59.268 47.619 0.00 0.00 0.00 4.01
307 308 1.464608 CCACATTTCATCGACGCTTGT 59.535 47.619 0.00 0.00 0.00 3.16
308 309 2.474526 CCACATTTCATCGACGCTTGTC 60.475 50.000 0.00 0.00 39.33 3.18
318 319 2.853210 CGCTTGTCGTCGTTGCAT 59.147 55.556 0.00 0.00 0.00 3.96
319 320 1.225475 CGCTTGTCGTCGTTGCATC 60.225 57.895 0.00 0.00 0.00 3.91
320 321 1.225475 GCTTGTCGTCGTTGCATCG 60.225 57.895 10.93 10.93 0.00 3.84
321 322 1.614227 GCTTGTCGTCGTTGCATCGA 61.614 55.000 15.58 15.58 37.51 3.59
322 323 0.781787 CTTGTCGTCGTTGCATCGAA 59.218 50.000 20.62 4.50 41.47 3.71
323 324 1.390123 CTTGTCGTCGTTGCATCGAAT 59.610 47.619 20.62 0.00 41.47 3.34
324 325 0.713329 TGTCGTCGTTGCATCGAATG 59.287 50.000 20.62 15.84 41.47 2.67
325 326 0.989164 GTCGTCGTTGCATCGAATGA 59.011 50.000 20.62 17.66 41.47 2.57
326 327 1.388768 GTCGTCGTTGCATCGAATGAA 59.611 47.619 20.62 4.96 41.47 2.57
327 328 2.062519 TCGTCGTTGCATCGAATGAAA 58.937 42.857 20.62 3.33 41.47 2.69
328 329 2.092055 TCGTCGTTGCATCGAATGAAAG 59.908 45.455 20.62 8.91 41.47 2.62
329 330 2.159841 CGTCGTTGCATCGAATGAAAGT 60.160 45.455 20.62 0.00 41.47 2.66
330 331 3.664276 CGTCGTTGCATCGAATGAAAGTT 60.664 43.478 20.62 0.00 41.47 2.66
331 332 3.599514 GTCGTTGCATCGAATGAAAGTTG 59.400 43.478 20.62 0.00 41.47 3.16
332 333 3.249799 TCGTTGCATCGAATGAAAGTTGT 59.750 39.130 17.08 0.00 36.89 3.32
333 334 3.358700 CGTTGCATCGAATGAAAGTTGTG 59.641 43.478 11.75 0.00 0.00 3.33
334 335 4.536065 GTTGCATCGAATGAAAGTTGTGA 58.464 39.130 0.00 0.00 0.00 3.58
335 336 4.827304 TGCATCGAATGAAAGTTGTGAA 57.173 36.364 0.00 0.00 0.00 3.18
336 337 4.786507 TGCATCGAATGAAAGTTGTGAAG 58.213 39.130 0.00 0.00 0.00 3.02
337 338 4.514816 TGCATCGAATGAAAGTTGTGAAGA 59.485 37.500 0.00 0.00 0.00 2.87
338 339 4.848299 GCATCGAATGAAAGTTGTGAAGAC 59.152 41.667 0.00 0.00 0.00 3.01
339 340 4.708868 TCGAATGAAAGTTGTGAAGACG 57.291 40.909 0.00 0.00 0.00 4.18
340 341 4.364860 TCGAATGAAAGTTGTGAAGACGA 58.635 39.130 0.00 0.00 0.00 4.20
341 342 4.444388 TCGAATGAAAGTTGTGAAGACGAG 59.556 41.667 0.00 0.00 0.00 4.18
342 343 4.209288 CGAATGAAAGTTGTGAAGACGAGT 59.791 41.667 0.00 0.00 0.00 4.18
343 344 5.409643 AATGAAAGTTGTGAAGACGAGTG 57.590 39.130 0.00 0.00 0.00 3.51
344 345 4.118093 TGAAAGTTGTGAAGACGAGTGA 57.882 40.909 0.00 0.00 0.00 3.41
345 346 4.500127 TGAAAGTTGTGAAGACGAGTGAA 58.500 39.130 0.00 0.00 0.00 3.18
346 347 4.932799 TGAAAGTTGTGAAGACGAGTGAAA 59.067 37.500 0.00 0.00 0.00 2.69
347 348 5.410132 TGAAAGTTGTGAAGACGAGTGAAAA 59.590 36.000 0.00 0.00 0.00 2.29
348 349 4.859629 AGTTGTGAAGACGAGTGAAAAC 57.140 40.909 0.00 0.00 0.00 2.43
349 350 4.250464 AGTTGTGAAGACGAGTGAAAACA 58.750 39.130 0.00 0.00 0.00 2.83
350 351 4.693566 AGTTGTGAAGACGAGTGAAAACAA 59.306 37.500 0.00 0.00 0.00 2.83
351 352 5.180492 AGTTGTGAAGACGAGTGAAAACAAA 59.820 36.000 0.00 0.00 0.00 2.83
352 353 5.216566 TGTGAAGACGAGTGAAAACAAAG 57.783 39.130 0.00 0.00 0.00 2.77
353 354 4.932799 TGTGAAGACGAGTGAAAACAAAGA 59.067 37.500 0.00 0.00 0.00 2.52
354 355 5.584649 TGTGAAGACGAGTGAAAACAAAGAT 59.415 36.000 0.00 0.00 0.00 2.40
355 356 5.904080 GTGAAGACGAGTGAAAACAAAGATG 59.096 40.000 0.00 0.00 0.00 2.90
356 357 5.815222 TGAAGACGAGTGAAAACAAAGATGA 59.185 36.000 0.00 0.00 0.00 2.92
357 358 5.914085 AGACGAGTGAAAACAAAGATGAG 57.086 39.130 0.00 0.00 0.00 2.90
363 364 2.957680 TGAAAACAAAGATGAGCCAGCA 59.042 40.909 0.00 0.00 0.00 4.41
369 370 3.130516 ACAAAGATGAGCCAGCAATCATG 59.869 43.478 0.00 4.99 36.30 3.07
373 374 2.203470 TGAGCCAGCAATCATGAACA 57.797 45.000 0.00 0.00 0.00 3.18
374 375 2.516906 TGAGCCAGCAATCATGAACAA 58.483 42.857 0.00 0.00 0.00 2.83
377 378 1.931172 GCCAGCAATCATGAACAATGC 59.069 47.619 14.63 14.63 36.11 3.56
380 381 4.188462 CCAGCAATCATGAACAATGCATT 58.812 39.130 20.87 5.99 39.42 3.56
407 409 0.177836 CGGAGGCACATATGTGGTGA 59.822 55.000 31.63 0.00 45.72 4.02
419 421 1.668151 GTGGTGAAGGTCTGGACGC 60.668 63.158 0.00 0.00 0.00 5.19
423 425 2.283529 TGAAGGTCTGGACGCCCTC 61.284 63.158 0.00 0.00 0.00 4.30
446 448 0.461135 CCCTCCAAATTTGATGCCGG 59.539 55.000 19.86 10.92 0.00 6.13
449 451 2.417243 CCTCCAAATTTGATGCCGGTTC 60.417 50.000 19.86 0.79 0.00 3.62
455 457 0.953471 TTTGATGCCGGTTCGTGGAG 60.953 55.000 1.90 0.00 0.00 3.86
459 461 0.035439 ATGCCGGTTCGTGGAGATTT 60.035 50.000 1.90 0.00 0.00 2.17
481 483 3.351740 AGACACACAAACACATTGGTCA 58.648 40.909 0.00 0.00 43.66 4.02
482 484 3.761218 AGACACACAAACACATTGGTCAA 59.239 39.130 0.00 0.00 43.66 3.18
494 496 1.576356 TTGGTCAAAATGTTTGCGGC 58.424 45.000 0.00 0.00 0.00 6.53
860 5908 0.232303 CACGCGCCGAATAATCCTTC 59.768 55.000 5.73 0.00 0.00 3.46
909 5962 0.185175 GGTTTCAACTCCCACCACCT 59.815 55.000 0.00 0.00 0.00 4.00
1062 6133 2.230940 CCTCGATTACGCTGCCACG 61.231 63.158 0.00 0.00 39.58 4.94
1733 6813 4.279671 AGGATCATAGATGTGTTCGACCTC 59.720 45.833 0.00 0.00 0.00 3.85
1823 6903 1.289380 GAGCAACTCCTTCGTCGGT 59.711 57.895 0.00 0.00 0.00 4.69
1859 6939 2.047830 GTGTATCCCTCGGATTTCCCT 58.952 52.381 0.00 0.00 39.79 4.20
1895 6975 1.574428 GTCGACGGTTGCTGCAAAT 59.426 52.632 17.80 5.68 0.00 2.32
2029 7109 4.900154 GAGCAAGTCTCCGACCAG 57.100 61.111 0.00 0.00 35.77 4.00
2107 7187 2.286833 CCAACAACGACGATTTCAGTGT 59.713 45.455 0.00 0.00 0.00 3.55
2748 7837 5.529581 TTACTCAATCCGCATATCTGTCA 57.470 39.130 0.00 0.00 0.00 3.58
2781 7870 2.149578 GCCGAATTGGATGATCTGAGG 58.850 52.381 0.00 0.00 42.00 3.86
2890 7983 6.839454 AGAATAGAAACAGGCATCATCATCT 58.161 36.000 0.00 0.00 0.00 2.90
2891 7984 6.711194 AGAATAGAAACAGGCATCATCATCTG 59.289 38.462 0.00 0.00 0.00 2.90
2929 8028 6.409524 AATTGATGTGATGTTTTGTCCAGT 57.590 33.333 0.00 0.00 0.00 4.00
2987 8086 9.330063 TGCTTTGATGTATACAAATAAGAGAGG 57.670 33.333 19.88 4.38 36.79 3.69
3028 8734 6.538381 CCAGAAGTGTTTTGCCTAATGTTTTT 59.462 34.615 0.00 0.00 0.00 1.94
3057 8763 1.539124 AACGGGGGAGAGCTTCCTT 60.539 57.895 12.71 0.24 45.98 3.36
3058 8764 1.842381 AACGGGGGAGAGCTTCCTTG 61.842 60.000 12.71 7.19 45.98 3.61
3265 8974 6.432581 AGACACAAGTAGATGTAGGGTATCA 58.567 40.000 0.00 0.00 30.84 2.15
3280 8989 3.261897 GGGTATCATCGAGGGATCACAAT 59.738 47.826 0.00 0.00 0.00 2.71
3310 9019 1.234615 TGCAAGCTTCCTAACACGCC 61.235 55.000 0.00 0.00 0.00 5.68
3336 9045 1.271379 GGCATGCATACCGAACCCTAT 60.271 52.381 21.36 0.00 0.00 2.57
3374 9083 3.885724 TCCATAATCAGCGAGTGACAA 57.114 42.857 0.00 0.00 38.28 3.18
3383 9092 2.287644 CAGCGAGTGACAAATGAACACA 59.712 45.455 13.93 0.00 37.05 3.72
3410 9119 2.125350 CTTGACTGGGAGCTCCGC 60.125 66.667 26.36 18.93 38.76 5.54
3413 9122 4.154347 GACTGGGAGCTCCGCCAG 62.154 72.222 27.95 27.95 38.44 4.85
3426 9135 0.657840 CCGCCAGATGAATTCGGAAC 59.342 55.000 0.04 0.00 42.43 3.62
3455 9164 1.746615 TTGAGGAGGCATCTTGCGC 60.747 57.895 0.00 0.00 46.21 6.09
3494 9203 1.120530 ACCGAGACAACACCAAGAGT 58.879 50.000 0.00 0.00 0.00 3.24
3531 9240 2.301870 ACACAACGAAAGCCATAGGAGA 59.698 45.455 0.00 0.00 0.00 3.71
3537 10322 4.279145 ACGAAAGCCATAGGAGAGTCTTA 58.721 43.478 0.00 0.00 0.00 2.10
3554 10339 3.374058 GTCTTAAGTATGCACGGCAACAT 59.626 43.478 1.63 0.00 43.62 2.71
3563 10348 1.942657 GCACGGCAACATAGATGACAT 59.057 47.619 0.00 0.00 0.00 3.06
3617 10402 2.290464 GCGTGCTTCCTCTCTACTAGA 58.710 52.381 0.00 0.00 0.00 2.43
3707 10785 3.717400 TCGAATCCATGAGAGCTACAC 57.283 47.619 0.00 0.00 0.00 2.90
3721 10799 5.109903 AGAGCTACACGGTTACAATCAATC 58.890 41.667 0.00 0.00 0.00 2.67
3725 10803 7.045416 AGCTACACGGTTACAATCAATCATTA 58.955 34.615 0.00 0.00 0.00 1.90
3741 10819 6.536224 TCAATCATTAGTATCTGCACACACAG 59.464 38.462 0.00 0.00 39.12 3.66
3770 10849 1.814429 TCTTGTTCCCCAACAGGAGA 58.186 50.000 0.00 0.00 42.17 3.71
3794 10873 2.284190 GAGGTTGCCAATCTCACTAGC 58.716 52.381 12.82 0.00 0.00 3.42
3833 10912 5.446143 AGAAATAAAACGCATGTGTGGAA 57.554 34.783 13.66 1.38 0.00 3.53
3851 10930 7.920151 TGTGTGGAAAGTGTTGATGAAAATTAG 59.080 33.333 0.00 0.00 0.00 1.73
3922 11001 4.217767 ACTTTATGGAGGAAAAAGGAACGC 59.782 41.667 0.00 0.00 35.09 4.84
3992 11071 8.635328 GGGTGTGGTAAATTAATTATAGTTGGG 58.365 37.037 0.01 0.00 0.00 4.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.322442 AGAGGAGCAAAAGCACAACC 58.678 50.000 0.00 0.00 0.00 3.77
1 2 2.735823 CAAGAGGAGCAAAAGCACAAC 58.264 47.619 0.00 0.00 0.00 3.32
2 3 1.067516 GCAAGAGGAGCAAAAGCACAA 59.932 47.619 0.00 0.00 0.00 3.33
3 4 0.670162 GCAAGAGGAGCAAAAGCACA 59.330 50.000 0.00 0.00 0.00 4.57
4 5 0.386478 CGCAAGAGGAGCAAAAGCAC 60.386 55.000 0.00 0.00 43.02 4.40
5 6 1.518056 CCGCAAGAGGAGCAAAAGCA 61.518 55.000 0.00 0.00 43.02 3.91
6 7 1.211190 CCGCAAGAGGAGCAAAAGC 59.789 57.895 0.00 0.00 43.02 3.51
8 9 0.895100 ATGCCGCAAGAGGAGCAAAA 60.895 50.000 0.00 0.00 38.99 2.44
9 10 1.303561 ATGCCGCAAGAGGAGCAAA 60.304 52.632 0.00 0.00 38.99 3.68
10 11 2.042259 CATGCCGCAAGAGGAGCAA 61.042 57.895 0.00 0.00 38.99 3.91
11 12 2.437180 CATGCCGCAAGAGGAGCA 60.437 61.111 0.00 0.00 40.00 4.26
12 13 3.885521 GCATGCCGCAAGAGGAGC 61.886 66.667 6.36 0.00 41.79 4.70
26 27 1.555075 ACCGGACTACATGTTCTGCAT 59.445 47.619 9.46 0.00 38.60 3.96
27 28 0.973632 ACCGGACTACATGTTCTGCA 59.026 50.000 9.46 0.00 0.00 4.41
28 29 1.067142 TCACCGGACTACATGTTCTGC 60.067 52.381 9.46 0.00 0.00 4.26
29 30 2.607187 GTCACCGGACTACATGTTCTG 58.393 52.381 9.46 0.91 40.99 3.02
30 31 1.201647 CGTCACCGGACTACATGTTCT 59.798 52.381 9.46 0.00 42.05 3.01
31 32 1.625616 CGTCACCGGACTACATGTTC 58.374 55.000 9.46 0.00 42.05 3.18
32 33 0.389426 GCGTCACCGGACTACATGTT 60.389 55.000 9.46 0.00 42.05 2.71
33 34 1.214589 GCGTCACCGGACTACATGT 59.785 57.895 9.46 2.69 42.05 3.21
34 35 0.802222 CTGCGTCACCGGACTACATG 60.802 60.000 9.46 0.00 42.05 3.21
35 36 1.511305 CTGCGTCACCGGACTACAT 59.489 57.895 9.46 0.00 42.05 2.29
36 37 2.632544 CCTGCGTCACCGGACTACA 61.633 63.158 9.46 0.00 42.05 2.74
37 38 2.181021 CCTGCGTCACCGGACTAC 59.819 66.667 9.46 1.42 42.05 2.73
38 39 3.755628 GCCTGCGTCACCGGACTA 61.756 66.667 9.46 0.00 42.05 2.59
51 52 4.711949 AGCAACCGGAGCAGCCTG 62.712 66.667 21.98 0.00 0.00 4.85
52 53 4.400961 GAGCAACCGGAGCAGCCT 62.401 66.667 21.98 4.92 0.00 4.58
54 55 4.400961 AGGAGCAACCGGAGCAGC 62.401 66.667 21.98 13.58 44.74 5.25
55 56 2.125350 GAGGAGCAACCGGAGCAG 60.125 66.667 21.98 4.89 44.74 4.24
56 57 3.706373 GGAGGAGCAACCGGAGCA 61.706 66.667 21.98 0.00 44.74 4.26
57 58 4.821589 CGGAGGAGCAACCGGAGC 62.822 72.222 9.46 12.61 44.59 4.70
62 63 1.095807 GTAATGGCGGAGGAGCAACC 61.096 60.000 0.00 0.00 39.27 3.77
63 64 1.429148 CGTAATGGCGGAGGAGCAAC 61.429 60.000 0.00 0.00 39.27 4.17
64 65 1.153449 CGTAATGGCGGAGGAGCAA 60.153 57.895 0.00 0.00 39.27 3.91
65 66 2.499205 CGTAATGGCGGAGGAGCA 59.501 61.111 0.00 0.00 39.27 4.26
75 76 1.429148 GCACTTCGAGGCCGTAATGG 61.429 60.000 0.00 0.00 42.50 3.16
76 77 0.739462 TGCACTTCGAGGCCGTAATG 60.739 55.000 0.00 0.00 37.05 1.90
77 78 0.739813 GTGCACTTCGAGGCCGTAAT 60.740 55.000 10.32 0.00 37.05 1.89
78 79 1.373748 GTGCACTTCGAGGCCGTAA 60.374 57.895 10.32 0.00 37.05 3.18
79 80 2.260434 GTGCACTTCGAGGCCGTA 59.740 61.111 10.32 0.00 37.05 4.02
80 81 4.681978 GGTGCACTTCGAGGCCGT 62.682 66.667 17.98 0.00 37.05 5.68
81 82 4.379243 AGGTGCACTTCGAGGCCG 62.379 66.667 17.98 0.00 37.07 6.13
82 83 2.743928 CAGGTGCACTTCGAGGCC 60.744 66.667 17.98 0.00 0.00 5.19
83 84 3.426568 GCAGGTGCACTTCGAGGC 61.427 66.667 17.98 4.93 41.59 4.70
84 85 3.114616 CGCAGGTGCACTTCGAGG 61.115 66.667 17.98 0.00 38.11 4.63
85 86 3.782244 GCGCAGGTGCACTTCGAG 61.782 66.667 17.98 8.31 38.11 4.04
94 95 3.723235 ATGACCTAGCGCGCAGGTG 62.723 63.158 40.41 26.63 46.60 4.00
96 97 2.963854 CATGACCTAGCGCGCAGG 60.964 66.667 33.47 33.47 39.25 4.85
97 98 2.963854 CCATGACCTAGCGCGCAG 60.964 66.667 35.10 25.95 0.00 5.18
98 99 3.770040 ACCATGACCTAGCGCGCA 61.770 61.111 35.10 18.19 0.00 6.09
99 100 3.264897 CACCATGACCTAGCGCGC 61.265 66.667 26.66 26.66 0.00 6.86
100 101 1.148157 CTTCACCATGACCTAGCGCG 61.148 60.000 0.00 0.00 0.00 6.86
101 102 1.432270 GCTTCACCATGACCTAGCGC 61.432 60.000 0.00 0.00 0.00 5.92
102 103 0.811616 GGCTTCACCATGACCTAGCG 60.812 60.000 0.00 0.00 38.86 4.26
103 104 0.253044 TGGCTTCACCATGACCTAGC 59.747 55.000 0.00 0.00 46.36 3.42
113 114 1.515521 CTCCGGTTGTTGGCTTCACC 61.516 60.000 0.00 0.00 39.84 4.02
114 115 1.949257 CTCCGGTTGTTGGCTTCAC 59.051 57.895 0.00 0.00 0.00 3.18
115 116 1.896660 GCTCCGGTTGTTGGCTTCA 60.897 57.895 0.00 0.00 0.00 3.02
116 117 2.954611 GCTCCGGTTGTTGGCTTC 59.045 61.111 0.00 0.00 0.00 3.86
117 118 2.978010 CGCTCCGGTTGTTGGCTT 60.978 61.111 0.00 0.00 0.00 4.35
139 140 2.885644 CATCCGACAACGAGCCCG 60.886 66.667 0.00 0.00 42.66 6.13
140 141 3.195698 GCATCCGACAACGAGCCC 61.196 66.667 0.00 0.00 42.66 5.19
141 142 3.195698 GGCATCCGACAACGAGCC 61.196 66.667 0.00 0.00 42.66 4.70
142 143 2.125512 AGGCATCCGACAACGAGC 60.126 61.111 0.00 0.00 42.66 5.03
143 144 1.519455 GGAGGCATCCGACAACGAG 60.519 63.158 0.00 0.00 42.66 4.18
144 145 2.577059 GGAGGCATCCGACAACGA 59.423 61.111 0.00 0.00 42.66 3.85
153 154 0.531532 CACACGATGGAGGAGGCATC 60.532 60.000 0.00 0.00 0.00 3.91
154 155 0.977627 TCACACGATGGAGGAGGCAT 60.978 55.000 0.00 0.00 0.00 4.40
155 156 1.607801 CTCACACGATGGAGGAGGCA 61.608 60.000 0.00 0.00 0.00 4.75
156 157 1.142748 CTCACACGATGGAGGAGGC 59.857 63.158 0.00 0.00 0.00 4.70
157 158 1.142748 GCTCACACGATGGAGGAGG 59.857 63.158 0.00 0.00 0.00 4.30
158 159 1.142748 GGCTCACACGATGGAGGAG 59.857 63.158 0.00 0.00 0.00 3.69
159 160 1.305297 AGGCTCACACGATGGAGGA 60.305 57.895 0.00 0.00 0.00 3.71
160 161 1.142748 GAGGCTCACACGATGGAGG 59.857 63.158 10.25 0.00 0.00 4.30
161 162 0.459237 GTGAGGCTCACACGATGGAG 60.459 60.000 36.14 0.00 46.22 3.86
162 163 1.591703 GTGAGGCTCACACGATGGA 59.408 57.895 36.14 1.83 46.22 3.41
163 164 4.192000 GTGAGGCTCACACGATGG 57.808 61.111 36.14 0.00 46.22 3.51
182 183 1.153168 ACATACATGCCGGACTGCC 60.153 57.895 5.05 0.00 0.00 4.85
183 184 0.744414 ACACATACATGCCGGACTGC 60.744 55.000 5.05 0.00 0.00 4.40
184 185 1.290203 GACACATACATGCCGGACTG 58.710 55.000 5.05 3.38 0.00 3.51
185 186 0.901827 TGACACATACATGCCGGACT 59.098 50.000 5.05 0.00 0.00 3.85
186 187 1.599071 CATGACACATACATGCCGGAC 59.401 52.381 5.05 0.00 38.58 4.79
187 188 1.952193 CATGACACATACATGCCGGA 58.048 50.000 5.05 0.00 38.58 5.14
200 201 1.202794 ACATGTCCACTGTGCATGACA 60.203 47.619 25.25 21.26 41.62 3.58
201 202 1.527034 ACATGTCCACTGTGCATGAC 58.473 50.000 25.25 17.46 41.62 3.06
202 203 2.275134 AACATGTCCACTGTGCATGA 57.725 45.000 25.25 7.95 41.62 3.07
203 204 3.076621 ACTAACATGTCCACTGTGCATG 58.923 45.455 20.00 20.00 43.84 4.06
204 205 3.244526 TGACTAACATGTCCACTGTGCAT 60.245 43.478 0.00 0.00 36.21 3.96
205 206 2.103941 TGACTAACATGTCCACTGTGCA 59.896 45.455 0.00 0.00 36.21 4.57
206 207 2.766313 TGACTAACATGTCCACTGTGC 58.234 47.619 0.00 0.00 36.21 4.57
207 208 5.692814 CAAATGACTAACATGTCCACTGTG 58.307 41.667 0.00 0.00 39.39 3.66
208 209 4.216257 GCAAATGACTAACATGTCCACTGT 59.784 41.667 0.00 0.00 39.39 3.55
209 210 4.216042 TGCAAATGACTAACATGTCCACTG 59.784 41.667 0.00 0.00 39.39 3.66
210 211 4.397420 TGCAAATGACTAACATGTCCACT 58.603 39.130 0.00 0.00 39.39 4.00
211 212 4.764679 TGCAAATGACTAACATGTCCAC 57.235 40.909 0.00 0.00 39.39 4.02
212 213 5.981088 AATGCAAATGACTAACATGTCCA 57.019 34.783 0.00 0.00 39.39 4.02
213 214 7.088589 ACTAATGCAAATGACTAACATGTCC 57.911 36.000 0.00 0.00 39.39 4.02
214 215 7.751732 TGACTAATGCAAATGACTAACATGTC 58.248 34.615 0.00 0.00 39.39 3.06
215 216 7.686438 TGACTAATGCAAATGACTAACATGT 57.314 32.000 0.00 0.00 39.39 3.21
216 217 9.577110 AAATGACTAATGCAAATGACTAACATG 57.423 29.630 0.00 0.00 39.39 3.21
217 218 9.577110 CAAATGACTAATGCAAATGACTAACAT 57.423 29.630 0.00 0.00 41.45 2.71
218 219 7.541783 GCAAATGACTAATGCAAATGACTAACA 59.458 33.333 0.00 0.00 39.81 2.41
219 220 7.541783 TGCAAATGACTAATGCAAATGACTAAC 59.458 33.333 0.00 0.00 46.23 2.34
220 221 7.600960 TGCAAATGACTAATGCAAATGACTAA 58.399 30.769 0.00 0.00 46.23 2.24
221 222 7.155655 TGCAAATGACTAATGCAAATGACTA 57.844 32.000 0.00 0.00 46.23 2.59
222 223 6.028146 TGCAAATGACTAATGCAAATGACT 57.972 33.333 0.00 0.00 46.23 3.41
230 231 2.543641 GCCCTTGCAAATGACTAATGC 58.456 47.619 0.00 0.00 40.45 3.56
231 232 2.496871 TGGCCCTTGCAAATGACTAATG 59.503 45.455 0.00 0.00 40.13 1.90
232 233 2.497273 GTGGCCCTTGCAAATGACTAAT 59.503 45.455 0.00 0.00 40.13 1.73
233 234 1.892474 GTGGCCCTTGCAAATGACTAA 59.108 47.619 0.00 0.00 40.13 2.24
234 235 1.544724 GTGGCCCTTGCAAATGACTA 58.455 50.000 0.00 0.00 40.13 2.59
235 236 1.187567 GGTGGCCCTTGCAAATGACT 61.188 55.000 0.00 0.00 40.13 3.41
236 237 1.293179 GGTGGCCCTTGCAAATGAC 59.707 57.895 0.00 0.00 40.13 3.06
237 238 0.544833 ATGGTGGCCCTTGCAAATGA 60.545 50.000 0.00 0.00 40.13 2.57
238 239 0.108041 GATGGTGGCCCTTGCAAATG 60.108 55.000 0.00 0.00 40.13 2.32
239 240 0.252375 AGATGGTGGCCCTTGCAAAT 60.252 50.000 0.00 0.00 40.13 2.32
240 241 0.899717 GAGATGGTGGCCCTTGCAAA 60.900 55.000 0.00 0.00 40.13 3.68
241 242 1.304381 GAGATGGTGGCCCTTGCAA 60.304 57.895 0.00 0.00 40.13 4.08
242 243 2.356278 GAGATGGTGGCCCTTGCA 59.644 61.111 0.00 0.00 40.13 4.08
243 244 2.825836 CGAGATGGTGGCCCTTGC 60.826 66.667 0.00 0.00 0.00 4.01
244 245 1.746615 CACGAGATGGTGGCCCTTG 60.747 63.158 0.00 0.00 34.27 3.61
245 246 2.671070 CACGAGATGGTGGCCCTT 59.329 61.111 0.00 0.00 34.27 3.95
246 247 4.101448 GCACGAGATGGTGGCCCT 62.101 66.667 0.00 0.00 38.36 5.19
247 248 2.252072 TAAGCACGAGATGGTGGCCC 62.252 60.000 0.00 0.00 39.59 5.80
248 249 0.179045 ATAAGCACGAGATGGTGGCC 60.179 55.000 0.00 0.00 39.59 5.36
249 250 0.940126 CATAAGCACGAGATGGTGGC 59.060 55.000 0.00 0.00 39.59 5.01
250 251 0.940126 GCATAAGCACGAGATGGTGG 59.060 55.000 0.00 0.00 39.59 4.61
251 252 0.578683 CGCATAAGCACGAGATGGTG 59.421 55.000 0.00 0.00 39.59 4.17
252 253 1.154205 GCGCATAAGCACGAGATGGT 61.154 55.000 0.30 0.00 42.27 3.55
253 254 1.566563 GCGCATAAGCACGAGATGG 59.433 57.895 0.30 0.00 42.27 3.51
254 255 1.566563 GGCGCATAAGCACGAGATG 59.433 57.895 10.83 0.00 42.27 2.90
255 256 1.951130 CGGCGCATAAGCACGAGAT 60.951 57.895 10.83 0.00 41.51 2.75
256 257 2.582226 CGGCGCATAAGCACGAGA 60.582 61.111 10.83 0.00 41.51 4.04
257 258 2.582226 TCGGCGCATAAGCACGAG 60.582 61.111 10.83 0.00 42.37 4.18
258 259 2.883730 GTCGGCGCATAAGCACGA 60.884 61.111 10.83 3.76 44.13 4.35
259 260 2.616776 CTTGTCGGCGCATAAGCACG 62.617 60.000 10.83 0.75 42.27 5.34
260 261 1.060937 CTTGTCGGCGCATAAGCAC 59.939 57.895 10.83 0.00 42.27 4.40
261 262 1.079474 TCTTGTCGGCGCATAAGCA 60.079 52.632 10.83 0.00 42.27 3.91
262 263 1.638467 CTCTTGTCGGCGCATAAGC 59.362 57.895 10.83 0.00 37.42 3.09
263 264 1.638467 GCTCTTGTCGGCGCATAAG 59.362 57.895 10.83 7.77 0.00 1.73
264 265 1.813753 GGCTCTTGTCGGCGCATAA 60.814 57.895 10.83 0.00 0.00 1.90
265 266 2.202878 GGCTCTTGTCGGCGCATA 60.203 61.111 10.83 0.00 0.00 3.14
270 271 3.491652 GAAGCGGCTCTTGTCGGC 61.492 66.667 1.45 0.00 42.23 5.54
271 272 2.815647 GGAAGCGGCTCTTGTCGG 60.816 66.667 1.45 0.00 42.23 4.79
272 273 2.048222 TGGAAGCGGCTCTTGTCG 60.048 61.111 1.45 0.00 45.15 4.35
273 274 0.674895 ATGTGGAAGCGGCTCTTGTC 60.675 55.000 1.45 0.00 34.56 3.18
274 275 0.250901 AATGTGGAAGCGGCTCTTGT 60.251 50.000 1.45 0.00 34.56 3.16
275 276 0.883833 AAATGTGGAAGCGGCTCTTG 59.116 50.000 1.45 0.00 34.56 3.02
276 277 1.168714 GAAATGTGGAAGCGGCTCTT 58.831 50.000 1.45 0.00 37.83 2.85
277 278 0.036732 TGAAATGTGGAAGCGGCTCT 59.963 50.000 1.45 0.00 0.00 4.09
278 279 1.064654 GATGAAATGTGGAAGCGGCTC 59.935 52.381 1.45 0.00 0.00 4.70
279 280 1.098050 GATGAAATGTGGAAGCGGCT 58.902 50.000 0.00 0.00 0.00 5.52
280 281 0.248215 CGATGAAATGTGGAAGCGGC 60.248 55.000 0.00 0.00 0.00 6.53
281 282 1.062587 GTCGATGAAATGTGGAAGCGG 59.937 52.381 0.00 0.00 0.00 5.52
282 283 1.267038 CGTCGATGAAATGTGGAAGCG 60.267 52.381 0.00 0.00 0.00 4.68
283 284 1.529826 GCGTCGATGAAATGTGGAAGC 60.530 52.381 9.31 0.00 0.00 3.86
284 285 2.002586 AGCGTCGATGAAATGTGGAAG 58.997 47.619 9.31 0.00 0.00 3.46
285 286 2.093306 AGCGTCGATGAAATGTGGAA 57.907 45.000 9.31 0.00 0.00 3.53
286 287 1.731709 CAAGCGTCGATGAAATGTGGA 59.268 47.619 9.31 0.00 0.00 4.02
287 288 1.464608 ACAAGCGTCGATGAAATGTGG 59.535 47.619 9.31 0.00 0.00 4.17
288 289 2.762472 GACAAGCGTCGATGAAATGTG 58.238 47.619 9.31 0.69 31.07 3.21
302 303 1.225475 CGATGCAACGACGACAAGC 60.225 57.895 11.36 0.01 35.09 4.01
303 304 0.781787 TTCGATGCAACGACGACAAG 59.218 50.000 19.31 0.00 41.97 3.16
304 305 1.125930 CATTCGATGCAACGACGACAA 59.874 47.619 19.31 4.26 41.97 3.18
305 306 0.713329 CATTCGATGCAACGACGACA 59.287 50.000 19.31 4.67 41.97 4.35
306 307 0.989164 TCATTCGATGCAACGACGAC 59.011 50.000 19.31 0.00 41.97 4.34
307 308 1.704070 TTCATTCGATGCAACGACGA 58.296 45.000 19.31 15.10 41.97 4.20
308 309 2.159841 ACTTTCATTCGATGCAACGACG 60.160 45.455 19.31 13.01 41.97 5.12
309 310 3.455619 ACTTTCATTCGATGCAACGAC 57.544 42.857 19.31 0.00 41.97 4.34
310 311 3.249799 ACAACTTTCATTCGATGCAACGA 59.750 39.130 15.63 15.63 40.55 3.85
311 312 3.358700 CACAACTTTCATTCGATGCAACG 59.641 43.478 10.48 10.48 0.00 4.10
312 313 4.536065 TCACAACTTTCATTCGATGCAAC 58.464 39.130 0.00 0.00 0.00 4.17
313 314 4.827304 TCACAACTTTCATTCGATGCAA 57.173 36.364 0.00 0.00 0.00 4.08
314 315 4.514816 TCTTCACAACTTTCATTCGATGCA 59.485 37.500 0.00 0.00 0.00 3.96
315 316 4.848299 GTCTTCACAACTTTCATTCGATGC 59.152 41.667 0.00 0.00 0.00 3.91
316 317 5.075448 CGTCTTCACAACTTTCATTCGATG 58.925 41.667 0.00 0.00 0.00 3.84
317 318 4.988540 TCGTCTTCACAACTTTCATTCGAT 59.011 37.500 0.00 0.00 0.00 3.59
318 319 4.364860 TCGTCTTCACAACTTTCATTCGA 58.635 39.130 0.00 0.00 0.00 3.71
319 320 4.209288 ACTCGTCTTCACAACTTTCATTCG 59.791 41.667 0.00 0.00 0.00 3.34
320 321 5.234329 TCACTCGTCTTCACAACTTTCATTC 59.766 40.000 0.00 0.00 0.00 2.67
321 322 5.116180 TCACTCGTCTTCACAACTTTCATT 58.884 37.500 0.00 0.00 0.00 2.57
322 323 4.693283 TCACTCGTCTTCACAACTTTCAT 58.307 39.130 0.00 0.00 0.00 2.57
323 324 4.118093 TCACTCGTCTTCACAACTTTCA 57.882 40.909 0.00 0.00 0.00 2.69
324 325 5.464965 TTTCACTCGTCTTCACAACTTTC 57.535 39.130 0.00 0.00 0.00 2.62
325 326 5.180492 TGTTTTCACTCGTCTTCACAACTTT 59.820 36.000 0.00 0.00 0.00 2.66
326 327 4.693566 TGTTTTCACTCGTCTTCACAACTT 59.306 37.500 0.00 0.00 0.00 2.66
327 328 4.250464 TGTTTTCACTCGTCTTCACAACT 58.750 39.130 0.00 0.00 0.00 3.16
328 329 4.593597 TGTTTTCACTCGTCTTCACAAC 57.406 40.909 0.00 0.00 0.00 3.32
329 330 5.410132 TCTTTGTTTTCACTCGTCTTCACAA 59.590 36.000 0.00 0.00 0.00 3.33
330 331 4.932799 TCTTTGTTTTCACTCGTCTTCACA 59.067 37.500 0.00 0.00 0.00 3.58
331 332 5.464965 TCTTTGTTTTCACTCGTCTTCAC 57.535 39.130 0.00 0.00 0.00 3.18
332 333 5.815222 TCATCTTTGTTTTCACTCGTCTTCA 59.185 36.000 0.00 0.00 0.00 3.02
333 334 6.287107 TCATCTTTGTTTTCACTCGTCTTC 57.713 37.500 0.00 0.00 0.00 2.87
334 335 5.277538 GCTCATCTTTGTTTTCACTCGTCTT 60.278 40.000 0.00 0.00 0.00 3.01
335 336 4.212214 GCTCATCTTTGTTTTCACTCGTCT 59.788 41.667 0.00 0.00 0.00 4.18
336 337 4.458708 GCTCATCTTTGTTTTCACTCGTC 58.541 43.478 0.00 0.00 0.00 4.20
337 338 3.251004 GGCTCATCTTTGTTTTCACTCGT 59.749 43.478 0.00 0.00 0.00 4.18
338 339 3.250762 TGGCTCATCTTTGTTTTCACTCG 59.749 43.478 0.00 0.00 0.00 4.18
339 340 4.791974 CTGGCTCATCTTTGTTTTCACTC 58.208 43.478 0.00 0.00 0.00 3.51
340 341 3.005155 GCTGGCTCATCTTTGTTTTCACT 59.995 43.478 0.00 0.00 0.00 3.41
341 342 3.243501 TGCTGGCTCATCTTTGTTTTCAC 60.244 43.478 0.00 0.00 0.00 3.18
342 343 2.957680 TGCTGGCTCATCTTTGTTTTCA 59.042 40.909 0.00 0.00 0.00 2.69
343 344 3.648339 TGCTGGCTCATCTTTGTTTTC 57.352 42.857 0.00 0.00 0.00 2.29
344 345 4.039488 TGATTGCTGGCTCATCTTTGTTTT 59.961 37.500 0.00 0.00 0.00 2.43
345 346 3.575256 TGATTGCTGGCTCATCTTTGTTT 59.425 39.130 0.00 0.00 0.00 2.83
346 347 3.159472 TGATTGCTGGCTCATCTTTGTT 58.841 40.909 0.00 0.00 0.00 2.83
347 348 2.799017 TGATTGCTGGCTCATCTTTGT 58.201 42.857 0.00 0.00 0.00 2.83
348 349 3.380320 TCATGATTGCTGGCTCATCTTTG 59.620 43.478 0.00 0.38 29.74 2.77
349 350 3.628008 TCATGATTGCTGGCTCATCTTT 58.372 40.909 0.00 0.00 29.74 2.52
350 351 3.292492 TCATGATTGCTGGCTCATCTT 57.708 42.857 0.00 0.00 29.74 2.40
351 352 2.950309 GTTCATGATTGCTGGCTCATCT 59.050 45.455 0.00 0.00 29.74 2.90
352 353 2.686405 TGTTCATGATTGCTGGCTCATC 59.314 45.455 0.00 0.00 29.74 2.92
353 354 2.730382 TGTTCATGATTGCTGGCTCAT 58.270 42.857 0.00 0.00 32.37 2.90
354 355 2.203470 TGTTCATGATTGCTGGCTCA 57.797 45.000 0.00 0.00 0.00 4.26
355 356 3.444916 CATTGTTCATGATTGCTGGCTC 58.555 45.455 0.00 0.00 34.31 4.70
356 357 2.418197 GCATTGTTCATGATTGCTGGCT 60.418 45.455 0.00 0.00 34.31 4.75
357 358 1.931172 GCATTGTTCATGATTGCTGGC 59.069 47.619 0.00 0.00 34.31 4.85
363 364 6.684613 GCTTCCCTAATGCATTGTTCATGATT 60.685 38.462 22.27 0.00 34.31 2.57
369 370 2.223572 CCGCTTCCCTAATGCATTGTTC 60.224 50.000 22.27 3.41 0.00 3.18
373 374 1.477558 CCTCCGCTTCCCTAATGCATT 60.478 52.381 17.56 17.56 0.00 3.56
374 375 0.109342 CCTCCGCTTCCCTAATGCAT 59.891 55.000 0.00 0.00 0.00 3.96
377 378 0.815615 GTGCCTCCGCTTCCCTAATG 60.816 60.000 0.00 0.00 35.36 1.90
380 381 0.397957 TATGTGCCTCCGCTTCCCTA 60.398 55.000 0.00 0.00 35.36 3.53
419 421 3.238597 TCAAATTTGGAGGGTTTGAGGG 58.761 45.455 17.90 0.00 37.05 4.30
423 425 3.337358 GGCATCAAATTTGGAGGGTTTG 58.663 45.455 17.90 6.26 34.90 2.93
446 448 4.304110 TGTGTGTCTAAATCTCCACGAAC 58.696 43.478 0.00 0.00 0.00 3.95
449 451 4.509970 TGTTTGTGTGTCTAAATCTCCACG 59.490 41.667 0.00 0.00 0.00 4.94
455 457 6.503524 ACCAATGTGTTTGTGTGTCTAAATC 58.496 36.000 0.00 0.00 33.15 2.17
459 461 4.518249 TGACCAATGTGTTTGTGTGTCTA 58.482 39.130 0.00 0.00 33.15 2.59
481 483 1.328986 CAAAACGGCCGCAAACATTTT 59.671 42.857 28.58 19.91 0.00 1.82
482 484 0.933796 CAAAACGGCCGCAAACATTT 59.066 45.000 28.58 14.58 0.00 2.32
561 563 1.184970 GCAGTTTGCCTTTGCCCCTA 61.185 55.000 0.00 0.00 37.42 3.53
1062 6133 1.300233 CCGAATCCTGCTAGTCGCC 60.300 63.158 0.00 0.00 35.75 5.54
1065 6136 0.102481 TTCGCCGAATCCTGCTAGTC 59.898 55.000 0.00 0.00 0.00 2.59
1643 6723 1.544825 CCAAGCTCCGGTTCCAGAGA 61.545 60.000 0.00 0.00 31.43 3.10
1733 6813 1.250154 TGGCGATTTTCTTGGGCTGG 61.250 55.000 0.00 0.00 0.00 4.85
1823 6903 4.261322 GGATACACCAGCGAATTCGTACTA 60.261 45.833 27.24 10.11 39.05 1.82
1895 6975 1.616091 CGTTAGGGGCCTTACCGGAA 61.616 60.000 9.46 0.00 40.62 4.30
2107 7187 3.190744 GTGACGATCACTCTGGTAACTGA 59.809 47.826 9.86 0.00 43.73 3.41
2297 7386 1.816537 GTACAGCGCATCCCTCTCA 59.183 57.895 11.47 0.00 0.00 3.27
2423 7512 3.907260 CTGCACCGTGTCAGCCCAT 62.907 63.158 9.16 0.00 0.00 4.00
2589 7678 0.251354 ACAAGCAGCTCGATGATGGT 59.749 50.000 0.00 0.00 45.29 3.55
2736 7825 3.867493 ACACTTGACATGACAGATATGCG 59.133 43.478 0.00 0.00 0.00 4.73
2748 7837 2.479566 ATTCGGCTGACACTTGACAT 57.520 45.000 0.00 0.00 0.00 3.06
2781 7870 8.283699 TGCCACCTTTACTTAATATAAACACC 57.716 34.615 0.00 0.00 0.00 4.16
2810 7903 2.464865 CGACTAATCTCTTCGCCCAAG 58.535 52.381 0.00 0.00 0.00 3.61
2828 7921 1.531739 GGGCAAAATCACCAAGGCGA 61.532 55.000 0.00 0.00 0.00 5.54
2878 7971 1.200252 GCAGATGCAGATGATGATGCC 59.800 52.381 5.17 0.00 41.85 4.40
2891 7984 5.685954 CACATCAATTACAAGATGCAGATGC 59.314 40.000 0.00 0.00 44.16 3.91
2929 8028 6.071051 TGTGTGCACCAGTATAATACTCTTGA 60.071 38.462 15.69 0.00 36.76 3.02
3003 8708 4.853924 ACATTAGGCAAAACACTTCTGG 57.146 40.909 0.00 0.00 0.00 3.86
3028 8734 0.471617 TCCCCCGTTGACCGTTAAAA 59.528 50.000 0.00 0.00 33.66 1.52
3035 8741 2.523453 GAAGCTCTCCCCCGTTGACC 62.523 65.000 0.00 0.00 0.00 4.02
3057 8763 7.894708 TCTTTGAATGACATTAAATTCAGGCA 58.105 30.769 0.00 0.00 42.20 4.75
3058 8764 8.761575 TTCTTTGAATGACATTAAATTCAGGC 57.238 30.769 0.00 0.00 42.20 4.85
3110 8818 3.481559 TTTTCTGGGGCCAATTATCCA 57.518 42.857 4.39 0.00 0.00 3.41
3120 8828 3.681473 CTCCGGTTTTTCTGGGGC 58.319 61.111 0.00 0.00 42.62 5.80
3265 8974 5.129485 AGTTTCTGTATTGTGATCCCTCGAT 59.871 40.000 0.00 0.00 0.00 3.59
3310 9019 3.110139 GGTATGCATGCCGGTGTG 58.890 61.111 18.56 3.26 0.00 3.82
3348 9057 2.700371 ACTCGCTGATTATGGATGGTCA 59.300 45.455 0.00 0.00 0.00 4.02
3374 9083 3.312736 AGGTCCAGGTTTGTGTTCATT 57.687 42.857 0.00 0.00 0.00 2.57
3383 9092 0.478507 CCCAGTCAAGGTCCAGGTTT 59.521 55.000 0.00 0.00 0.00 3.27
3410 9119 4.211374 GGTAATCGTTCCGAATTCATCTGG 59.789 45.833 6.22 0.00 39.99 3.86
3413 9122 5.236478 ACATGGTAATCGTTCCGAATTCATC 59.764 40.000 6.22 0.00 39.99 2.92
3426 9135 2.213499 GCCTCCTCAACATGGTAATCG 58.787 52.381 0.00 0.00 0.00 3.34
3432 9141 2.022195 CAAGATGCCTCCTCAACATGG 58.978 52.381 0.00 0.00 0.00 3.66
3455 9164 4.662145 GGTTTATCTTTGCTCAATGACGG 58.338 43.478 1.09 0.00 0.00 4.79
3494 9203 2.488952 TGTGTTGCAACGAGCTTGATA 58.511 42.857 23.79 0.57 45.94 2.15
3531 9240 3.000727 GTTGCCGTGCATACTTAAGACT 58.999 45.455 10.09 0.00 38.76 3.24
3537 10322 3.260475 TCTATGTTGCCGTGCATACTT 57.740 42.857 0.00 3.42 38.76 2.24
3554 10339 4.322725 GCCCATTGTCCGATATGTCATCTA 60.323 45.833 0.00 0.00 0.00 1.98
3563 10348 1.705002 CCCCTGCCCATTGTCCGATA 61.705 60.000 0.00 0.00 0.00 2.92
3617 10402 1.459348 CTTGGGGGCCAACACCTTT 60.459 57.895 4.39 0.00 38.75 3.11
3653 10439 2.173782 TCAACTAGGGGAAACTGTTGCA 59.826 45.455 0.11 0.00 38.19 4.08
3707 10785 8.223769 GCAGATACTAATGATTGATTGTAACCG 58.776 37.037 0.00 0.00 0.00 4.44
3741 10819 5.163457 TGTTGGGGAACAAGAAAGTTTGATC 60.163 40.000 0.00 0.00 40.38 2.92
3770 10849 0.036732 TGAGATTGGCAACCTCGCTT 59.963 50.000 16.62 0.00 0.00 4.68
3833 10912 9.768662 ATTTTCTGCTAATTTTCATCAACACTT 57.231 25.926 0.00 0.00 0.00 3.16
3851 10930 9.695884 TTTTAATTTCGTGTTTCAATTTTCTGC 57.304 25.926 0.00 0.00 0.00 4.26
3880 10959 8.664798 CATAAAGTTCTCAACCATAATCAACGA 58.335 33.333 0.00 0.00 0.00 3.85
3922 11001 2.223829 CCACTAGTGAACCTATGGAGCG 60.224 54.545 24.68 0.00 31.32 5.03
4041 11120 4.664150 TGGACGTGATGCTCATATGTTA 57.336 40.909 1.90 0.00 0.00 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.