Multiple sequence alignment - TraesCS5D01G137200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G137200 chr5D 100.000 6012 0 0 1 6012 218185831 218191842 0.000000e+00 11103.0
1 TraesCS5D01G137200 chr5D 93.125 160 9 2 483 642 523670274 523670431 3.620000e-57 233.0
2 TraesCS5D01G137200 chr5D 87.234 141 18 0 4126 4266 454099269 454099129 1.730000e-35 161.0
3 TraesCS5D01G137200 chr5D 85.000 140 21 0 4123 4262 505215643 505215782 6.280000e-30 143.0
4 TraesCS5D01G137200 chr5B 91.034 2833 119 60 2491 5227 234878476 234881269 0.000000e+00 3699.0
5 TraesCS5D01G137200 chr5B 90.351 1824 72 45 641 2434 234876706 234878455 0.000000e+00 2298.0
6 TraesCS5D01G137200 chr5B 91.234 616 35 12 5334 5948 234888554 234889151 0.000000e+00 821.0
7 TraesCS5D01G137200 chr5B 88.161 397 30 6 1 397 234876259 234876638 1.970000e-124 457.0
8 TraesCS5D01G137200 chr5A 89.751 2332 115 47 3698 5948 291132897 291135185 0.000000e+00 2868.0
9 TraesCS5D01G137200 chr5A 93.006 1973 66 25 708 2640 291129593 291131533 0.000000e+00 2813.0
10 TraesCS5D01G137200 chr5A 87.749 702 39 22 2965 3646 291131862 291132536 0.000000e+00 776.0
11 TraesCS5D01G137200 chr5A 87.284 464 32 10 4 459 291129134 291129578 6.950000e-139 505.0
12 TraesCS5D01G137200 chr5A 85.507 138 20 0 4125 4262 632836475 632836612 1.750000e-30 145.0
13 TraesCS5D01G137200 chr5A 84.892 139 21 0 4128 4266 34262965 34263103 2.260000e-29 141.0
14 TraesCS5D01G137200 chr3A 92.389 473 17 7 912 1365 725813803 725814275 0.000000e+00 656.0
15 TraesCS5D01G137200 chr3A 90.698 473 25 5 912 1365 120389615 120390087 3.980000e-171 612.0
16 TraesCS5D01G137200 chr3A 86.848 479 29 16 906 1365 59709372 59709835 6.950000e-139 505.0
17 TraesCS5D01G137200 chr3A 92.593 216 9 1 906 1114 519351528 519351743 2.720000e-78 303.0
18 TraesCS5D01G137200 chr3A 94.904 157 8 0 478 634 483242972 483243128 4.650000e-61 246.0
19 TraesCS5D01G137200 chr3A 94.268 157 9 0 478 634 26578323 26578479 2.170000e-59 241.0
20 TraesCS5D01G137200 chr3A 85.882 170 22 2 4121 4288 105112955 105112786 4.790000e-41 180.0
21 TraesCS5D01G137200 chr3A 91.071 56 5 0 1310 1365 519351850 519351905 6.460000e-10 76.8
22 TraesCS5D01G137200 chr1A 91.546 414 15 8 906 1300 515807093 515807505 2.450000e-153 553.0
23 TraesCS5D01G137200 chr1A 89.634 328 22 2 1050 1365 421134308 421133981 2.020000e-109 407.0
24 TraesCS5D01G137200 chr1A 75.862 406 77 18 4499 4892 387029202 387028806 2.860000e-43 187.0
25 TraesCS5D01G137200 chr1A 84.211 171 23 4 4498 4666 186213063 186213231 4.820000e-36 163.0
26 TraesCS5D01G137200 chr6A 96.178 157 6 0 478 634 512815974 512815818 2.150000e-64 257.0
27 TraesCS5D01G137200 chr6A 92.899 169 12 0 478 646 183267419 183267587 4.650000e-61 246.0
28 TraesCS5D01G137200 chr6B 93.711 159 10 0 478 636 662143991 662144149 7.790000e-59 239.0
29 TraesCS5D01G137200 chr7A 92.593 162 12 0 478 639 603089292 603089453 3.620000e-57 233.0
30 TraesCS5D01G137200 chr4A 93.038 158 11 0 478 635 446626132 446625975 1.300000e-56 231.0
31 TraesCS5D01G137200 chr1B 93.038 158 11 0 477 634 549691502 549691345 1.300000e-56 231.0
32 TraesCS5D01G137200 chr1B 75.990 404 80 15 4499 4892 416822571 416822175 6.150000e-45 193.0
33 TraesCS5D01G137200 chr1B 84.211 171 23 4 4498 4666 246454723 246454891 4.820000e-36 163.0
34 TraesCS5D01G137200 chr1D 75.495 404 82 15 4499 4892 307832776 307832380 1.330000e-41 182.0
35 TraesCS5D01G137200 chr1D 84.795 171 22 4 4498 4666 127504596 127504764 1.040000e-37 169.0
36 TraesCS5D01G137200 chr3D 88.079 151 18 0 4121 4271 88352212 88352362 4.790000e-41 180.0
37 TraesCS5D01G137200 chr3B 88.079 151 18 0 4121 4271 137750703 137750853 4.790000e-41 180.0
38 TraesCS5D01G137200 chr2B 95.000 40 1 1 1604 1643 737764351 737764389 1.810000e-05 62.1
39 TraesCS5D01G137200 chr2B 92.683 41 2 1 1604 1643 737786241 737786281 2.340000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G137200 chr5D 218185831 218191842 6011 False 11103.000000 11103 100.000000 1 6012 1 chr5D.!!$F1 6011
1 TraesCS5D01G137200 chr5B 234876259 234881269 5010 False 2151.333333 3699 89.848667 1 5227 3 chr5B.!!$F2 5226
2 TraesCS5D01G137200 chr5B 234888554 234889151 597 False 821.000000 821 91.234000 5334 5948 1 chr5B.!!$F1 614
3 TraesCS5D01G137200 chr5A 291129134 291135185 6051 False 1740.500000 2868 89.447500 4 5948 4 chr5A.!!$F3 5944

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
367 383 0.107993 TGCCCATCTTCTTCAGCGAG 60.108 55.0 0.00 0.0 0.00 5.03 F
623 644 0.110238 GACGTGCGTTGAATGTGCAT 60.110 50.0 0.00 0.0 41.23 3.96 F
707 728 0.193574 TCCTGAGGGAAAGTGGGAGT 59.806 55.0 0.00 0.0 38.93 3.85 F
1762 1827 0.389426 TTTCCTGCGCGTTCTACTCC 60.389 55.0 8.43 0.0 0.00 3.85 F
2718 3125 0.826715 ACAGCGTCATGTGGCTCTAT 59.173 50.0 9.73 0.0 37.41 1.98 F
3177 3590 0.519175 CGTCGTACAACGTACTCCCG 60.519 60.0 0.00 0.0 43.14 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2349 2434 0.179234 TGCAAACACTTCCTGACCGA 59.821 50.0 0.00 0.00 0.00 4.69 R
2489 2579 0.387239 GTCGGCAGGCACAAAATGAC 60.387 55.0 0.00 0.00 36.02 3.06 R
2673 3080 2.544267 GAGCAATCGTAGCCACCAATAC 59.456 50.0 0.00 0.00 0.00 1.89 R
3132 3544 0.305313 TTTTAACGGAGTGCGTGCAC 59.695 50.0 16.91 16.91 45.00 4.57 R
4165 4970 0.035317 ACACGATGTCCAGCATGTGT 59.965 50.0 0.00 0.00 40.98 3.72 R
5083 5919 0.736325 CAAGGGTGGTACGAGCTTCG 60.736 60.0 7.03 0.00 46.93 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.737236 CGCGTCCAATCCTGAATGAAA 59.263 47.619 0.00 0.00 0.00 2.69
107 111 1.184970 TCTGGGTGCATCACGAGACA 61.185 55.000 0.00 0.00 34.83 3.41
118 122 0.314302 CACGAGACAAGAGGAACCGT 59.686 55.000 0.00 0.00 0.00 4.83
267 271 4.201822 GCGATTATTCAGGTCAGGTCAAAC 60.202 45.833 0.00 0.00 0.00 2.93
288 292 2.733593 ACTGACGCGACGAAAGCC 60.734 61.111 15.93 0.00 0.00 4.35
308 312 6.721704 AGCCATTCTTTTCTCTTTTCTGTT 57.278 33.333 0.00 0.00 0.00 3.16
335 351 4.644498 CAAGGAAAACAATGCCCATCTTT 58.356 39.130 0.00 0.00 0.00 2.52
336 352 4.980339 AGGAAAACAATGCCCATCTTTT 57.020 36.364 0.00 0.00 0.00 2.27
337 353 5.308976 AGGAAAACAATGCCCATCTTTTT 57.691 34.783 0.00 1.56 0.00 1.94
338 354 5.308014 AGGAAAACAATGCCCATCTTTTTC 58.692 37.500 13.57 13.57 34.26 2.29
339 355 5.072193 AGGAAAACAATGCCCATCTTTTTCT 59.928 36.000 17.65 10.47 34.80 2.52
340 356 5.409520 GGAAAACAATGCCCATCTTTTTCTC 59.590 40.000 17.65 10.30 34.80 2.87
341 357 5.549742 AAACAATGCCCATCTTTTTCTCA 57.450 34.783 0.00 0.00 0.00 3.27
342 358 5.549742 AACAATGCCCATCTTTTTCTCAA 57.450 34.783 0.00 0.00 0.00 3.02
343 359 5.549742 ACAATGCCCATCTTTTTCTCAAA 57.450 34.783 0.00 0.00 0.00 2.69
344 360 5.927819 ACAATGCCCATCTTTTTCTCAAAA 58.072 33.333 0.00 0.00 0.00 2.44
345 361 6.355747 ACAATGCCCATCTTTTTCTCAAAAA 58.644 32.000 0.00 0.00 37.99 1.94
367 383 0.107993 TGCCCATCTTCTTCAGCGAG 60.108 55.000 0.00 0.00 0.00 5.03
399 415 5.296780 TCGAATCAACCTCTAATTGGAATGC 59.703 40.000 0.00 0.00 0.00 3.56
404 420 2.310538 CCTCTAATTGGAATGCCCCAC 58.689 52.381 0.00 0.00 35.62 4.61
472 493 9.303116 TGGATGGATCTTAATCTTCTCTACTAC 57.697 37.037 0.00 0.00 32.12 2.73
473 494 9.528489 GGATGGATCTTAATCTTCTCTACTACT 57.472 37.037 0.00 0.00 32.12 2.57
503 524 8.999431 ACAATATTTTCAGTCATTTGTACGAGT 58.001 29.630 0.00 0.00 0.00 4.18
504 525 9.825972 CAATATTTTCAGTCATTTGTACGAGTT 57.174 29.630 0.00 0.00 0.00 3.01
507 528 7.416154 TTTTCAGTCATTTGTACGAGTTAGG 57.584 36.000 0.00 0.00 0.00 2.69
508 529 5.970317 TCAGTCATTTGTACGAGTTAGGA 57.030 39.130 0.00 0.00 0.00 2.94
509 530 6.335471 TCAGTCATTTGTACGAGTTAGGAA 57.665 37.500 0.00 0.00 0.00 3.36
510 531 6.931838 TCAGTCATTTGTACGAGTTAGGAAT 58.068 36.000 0.00 0.00 0.00 3.01
511 532 7.383687 TCAGTCATTTGTACGAGTTAGGAATT 58.616 34.615 0.00 0.00 0.00 2.17
512 533 8.525316 TCAGTCATTTGTACGAGTTAGGAATTA 58.475 33.333 0.00 0.00 0.00 1.40
513 534 9.314321 CAGTCATTTGTACGAGTTAGGAATTAT 57.686 33.333 0.00 0.00 0.00 1.28
518 539 9.998106 ATTTGTACGAGTTAGGAATTATATGCT 57.002 29.630 0.00 0.00 0.00 3.79
519 540 9.826574 TTTGTACGAGTTAGGAATTATATGCTT 57.173 29.630 0.00 0.00 0.00 3.91
520 541 9.826574 TTGTACGAGTTAGGAATTATATGCTTT 57.173 29.630 0.00 0.00 0.00 3.51
521 542 9.826574 TGTACGAGTTAGGAATTATATGCTTTT 57.173 29.630 0.00 0.00 0.00 2.27
524 545 8.129211 ACGAGTTAGGAATTATATGCTTTTTGC 58.871 33.333 0.00 0.00 43.25 3.68
525 546 7.321271 CGAGTTAGGAATTATATGCTTTTTGCG 59.679 37.037 0.00 0.00 46.63 4.85
526 547 7.996385 AGTTAGGAATTATATGCTTTTTGCGT 58.004 30.769 0.00 0.00 46.63 5.24
527 548 7.915397 AGTTAGGAATTATATGCTTTTTGCGTG 59.085 33.333 0.00 0.00 46.63 5.34
528 549 6.449635 AGGAATTATATGCTTTTTGCGTGA 57.550 33.333 0.00 0.00 46.63 4.35
529 550 6.498304 AGGAATTATATGCTTTTTGCGTGAG 58.502 36.000 0.00 0.00 46.63 3.51
530 551 6.318648 AGGAATTATATGCTTTTTGCGTGAGA 59.681 34.615 0.00 0.00 46.63 3.27
531 552 7.013655 AGGAATTATATGCTTTTTGCGTGAGAT 59.986 33.333 0.00 0.00 46.63 2.75
532 553 7.649306 GGAATTATATGCTTTTTGCGTGAGATT 59.351 33.333 0.00 0.00 46.63 2.40
533 554 8.931385 AATTATATGCTTTTTGCGTGAGATTT 57.069 26.923 0.00 0.00 46.63 2.17
534 555 7.969387 TTATATGCTTTTTGCGTGAGATTTC 57.031 32.000 0.00 0.00 46.63 2.17
535 556 3.706802 TGCTTTTTGCGTGAGATTTCA 57.293 38.095 0.00 0.00 46.63 2.69
536 557 3.631144 TGCTTTTTGCGTGAGATTTCAG 58.369 40.909 0.00 0.00 46.63 3.02
537 558 2.406357 GCTTTTTGCGTGAGATTTCAGC 59.594 45.455 0.00 0.00 32.98 4.26
538 559 3.854784 GCTTTTTGCGTGAGATTTCAGCT 60.855 43.478 8.42 0.00 32.98 4.24
539 560 2.975410 TTTGCGTGAGATTTCAGCTG 57.025 45.000 7.63 7.63 32.98 4.24
540 561 1.882912 TTGCGTGAGATTTCAGCTGT 58.117 45.000 14.67 0.00 32.98 4.40
541 562 1.882912 TGCGTGAGATTTCAGCTGTT 58.117 45.000 14.67 0.00 32.98 3.16
542 563 1.800586 TGCGTGAGATTTCAGCTGTTC 59.199 47.619 14.67 9.54 32.98 3.18
543 564 1.800586 GCGTGAGATTTCAGCTGTTCA 59.199 47.619 14.67 8.33 32.98 3.18
544 565 2.224079 GCGTGAGATTTCAGCTGTTCAA 59.776 45.455 14.67 5.92 32.98 2.69
545 566 3.303990 GCGTGAGATTTCAGCTGTTCAAA 60.304 43.478 14.67 7.59 32.98 2.69
546 567 4.789481 GCGTGAGATTTCAGCTGTTCAAAA 60.789 41.667 14.67 7.20 32.98 2.44
547 568 5.455392 CGTGAGATTTCAGCTGTTCAAAAT 58.545 37.500 14.67 11.97 32.98 1.82
548 569 5.341462 CGTGAGATTTCAGCTGTTCAAAATG 59.659 40.000 14.67 0.00 32.98 2.32
549 570 6.211515 GTGAGATTTCAGCTGTTCAAAATGT 58.788 36.000 14.67 10.50 32.98 2.71
550 571 7.362662 GTGAGATTTCAGCTGTTCAAAATGTA 58.637 34.615 14.67 0.00 32.98 2.29
551 572 7.536622 GTGAGATTTCAGCTGTTCAAAATGTAG 59.463 37.037 14.67 0.00 32.98 2.74
552 573 7.445096 TGAGATTTCAGCTGTTCAAAATGTAGA 59.555 33.333 14.67 0.00 0.00 2.59
553 574 8.345724 AGATTTCAGCTGTTCAAAATGTAGAT 57.654 30.769 14.67 0.00 0.00 1.98
554 575 8.800332 AGATTTCAGCTGTTCAAAATGTAGATT 58.200 29.630 14.67 0.00 0.00 2.40
555 576 9.415544 GATTTCAGCTGTTCAAAATGTAGATTT 57.584 29.630 14.67 0.00 32.87 2.17
558 579 9.844790 TTCAGCTGTTCAAAATGTAGATTTATG 57.155 29.630 14.67 0.80 31.18 1.90
559 580 9.013229 TCAGCTGTTCAAAATGTAGATTTATGT 57.987 29.630 14.67 0.00 31.18 2.29
560 581 9.630098 CAGCTGTTCAAAATGTAGATTTATGTT 57.370 29.630 5.25 0.00 31.18 2.71
609 630 8.783999 AGTAGAACATATTTAATCGAGACGTG 57.216 34.615 0.00 0.00 0.00 4.49
610 631 6.512177 AGAACATATTTAATCGAGACGTGC 57.488 37.500 0.00 0.00 0.00 5.34
611 632 4.948864 ACATATTTAATCGAGACGTGCG 57.051 40.909 0.00 0.00 0.00 5.34
612 633 4.357142 ACATATTTAATCGAGACGTGCGT 58.643 39.130 0.00 0.00 0.00 5.24
613 634 4.802039 ACATATTTAATCGAGACGTGCGTT 59.198 37.500 0.00 0.00 0.00 4.84
614 635 3.634730 ATTTAATCGAGACGTGCGTTG 57.365 42.857 0.00 0.00 0.00 4.10
615 636 2.334971 TTAATCGAGACGTGCGTTGA 57.665 45.000 0.00 0.00 0.00 3.18
616 637 2.334971 TAATCGAGACGTGCGTTGAA 57.665 45.000 0.00 0.00 0.00 2.69
617 638 1.710013 AATCGAGACGTGCGTTGAAT 58.290 45.000 0.00 0.00 0.00 2.57
618 639 0.992072 ATCGAGACGTGCGTTGAATG 59.008 50.000 0.00 0.00 0.00 2.67
619 640 0.318360 TCGAGACGTGCGTTGAATGT 60.318 50.000 0.00 0.00 0.00 2.71
620 641 0.179275 CGAGACGTGCGTTGAATGTG 60.179 55.000 0.00 0.00 0.00 3.21
621 642 0.451135 GAGACGTGCGTTGAATGTGC 60.451 55.000 0.00 0.00 0.00 4.57
622 643 1.157257 AGACGTGCGTTGAATGTGCA 61.157 50.000 0.00 0.00 36.02 4.57
623 644 0.110238 GACGTGCGTTGAATGTGCAT 60.110 50.000 0.00 0.00 41.23 3.96
624 645 2.341977 CGTGCGTTGAATGTGCATG 58.658 52.632 0.00 0.00 41.23 4.06
625 646 1.667349 CGTGCGTTGAATGTGCATGC 61.667 55.000 11.82 11.82 41.23 4.06
626 647 0.387622 GTGCGTTGAATGTGCATGCT 60.388 50.000 20.33 0.00 41.23 3.79
627 648 0.314618 TGCGTTGAATGTGCATGCTT 59.685 45.000 20.33 4.59 32.86 3.91
628 649 1.538950 TGCGTTGAATGTGCATGCTTA 59.461 42.857 20.33 8.13 32.86 3.09
629 650 1.913403 GCGTTGAATGTGCATGCTTAC 59.087 47.619 20.33 10.35 0.00 2.34
630 651 2.414559 GCGTTGAATGTGCATGCTTACT 60.415 45.455 20.33 0.54 0.00 2.24
631 652 3.181511 GCGTTGAATGTGCATGCTTACTA 60.182 43.478 20.33 0.00 0.00 1.82
632 653 4.581493 CGTTGAATGTGCATGCTTACTAG 58.419 43.478 20.33 0.00 0.00 2.57
633 654 4.093408 CGTTGAATGTGCATGCTTACTAGT 59.907 41.667 20.33 0.00 0.00 2.57
634 655 5.290885 CGTTGAATGTGCATGCTTACTAGTA 59.709 40.000 20.33 0.00 0.00 1.82
635 656 6.018751 CGTTGAATGTGCATGCTTACTAGTAT 60.019 38.462 20.33 0.00 0.00 2.12
636 657 7.169140 CGTTGAATGTGCATGCTTACTAGTATA 59.831 37.037 20.33 0.00 0.00 1.47
637 658 8.993121 GTTGAATGTGCATGCTTACTAGTATAT 58.007 33.333 20.33 0.00 0.00 0.86
639 660 9.639601 TGAATGTGCATGCTTACTAGTATATAC 57.360 33.333 20.33 4.60 0.00 1.47
640 661 9.862371 GAATGTGCATGCTTACTAGTATATACT 57.138 33.333 20.33 19.07 40.24 2.12
660 681 3.870419 ACTAGTAGTGCTGTCGTAGTAGC 59.130 47.826 0.85 0.00 38.73 3.58
668 689 1.063764 CTGTCGTAGTAGCGGGAGTTC 59.936 57.143 0.00 0.00 0.00 3.01
673 694 3.119708 TCGTAGTAGCGGGAGTTCTTTTC 60.120 47.826 0.00 0.00 0.00 2.29
676 697 4.353383 AGTAGCGGGAGTTCTTTTCTTT 57.647 40.909 0.00 0.00 0.00 2.52
678 699 5.131067 AGTAGCGGGAGTTCTTTTCTTTTT 58.869 37.500 0.00 0.00 0.00 1.94
706 727 3.088923 TCCTGAGGGAAAGTGGGAG 57.911 57.895 0.00 0.00 38.93 4.30
707 728 0.193574 TCCTGAGGGAAAGTGGGAGT 59.806 55.000 0.00 0.00 38.93 3.85
708 729 1.068121 CCTGAGGGAAAGTGGGAGTT 58.932 55.000 0.00 0.00 33.58 3.01
709 730 1.003696 CCTGAGGGAAAGTGGGAGTTC 59.996 57.143 0.00 0.00 33.58 3.01
886 911 9.334693 CCTCTCTTCATCTTCAAATTAAAAACG 57.665 33.333 0.00 0.00 0.00 3.60
936 965 1.062121 TCCTCCTATTCCTCCCCTGTG 60.062 57.143 0.00 0.00 0.00 3.66
980 1009 4.459089 GGAGCAGACCCGCCTCAC 62.459 72.222 0.00 0.00 0.00 3.51
984 1013 2.997315 CAGACCCGCCTCACCTCA 60.997 66.667 0.00 0.00 0.00 3.86
1393 1447 4.948080 ACCACCCGTTCCTCCCGT 62.948 66.667 0.00 0.00 0.00 5.28
1521 1575 3.537874 GAGGCCGCCGTCAGGTAT 61.538 66.667 3.05 0.00 40.50 2.73
1522 1576 3.792053 GAGGCCGCCGTCAGGTATG 62.792 68.421 3.05 0.00 40.50 2.39
1541 1595 1.684734 TACGCCACCTCCTCCTTCC 60.685 63.158 0.00 0.00 0.00 3.46
1555 1609 5.529289 TCCTCCTTCCTCACAACTACATAT 58.471 41.667 0.00 0.00 0.00 1.78
1589 1647 6.464834 GCACTTAATTACACCTCGAAAAATCG 59.535 38.462 0.00 0.00 0.00 3.34
1658 1723 3.044986 CAACAAGTGCAAGGTTTGATCG 58.955 45.455 8.07 0.00 0.00 3.69
1665 1730 4.764823 AGTGCAAGGTTTGATCGGATTTTA 59.235 37.500 0.00 0.00 0.00 1.52
1759 1824 1.785951 GGTTTCCTGCGCGTTCTAC 59.214 57.895 8.43 0.00 0.00 2.59
1760 1825 0.669625 GGTTTCCTGCGCGTTCTACT 60.670 55.000 8.43 0.00 0.00 2.57
1761 1826 0.714439 GTTTCCTGCGCGTTCTACTC 59.286 55.000 8.43 0.00 0.00 2.59
1762 1827 0.389426 TTTCCTGCGCGTTCTACTCC 60.389 55.000 8.43 0.00 0.00 3.85
1763 1828 1.529152 TTCCTGCGCGTTCTACTCCA 61.529 55.000 8.43 0.00 0.00 3.86
1922 1987 1.672356 GTTGGGCACGCATCTGTCT 60.672 57.895 0.00 0.00 0.00 3.41
1936 2001 6.434340 ACGCATCTGTCTATTCATATGGAGTA 59.566 38.462 2.13 0.00 0.00 2.59
1938 2003 7.575720 CGCATCTGTCTATTCATATGGAGTACA 60.576 40.741 2.13 0.00 0.00 2.90
1946 2011 8.961634 TCTATTCATATGGAGTACATGTCTAGC 58.038 37.037 0.00 0.00 40.82 3.42
1947 2012 5.984695 TCATATGGAGTACATGTCTAGCC 57.015 43.478 0.00 0.45 40.82 3.93
1948 2013 5.393866 TCATATGGAGTACATGTCTAGCCA 58.606 41.667 0.00 6.87 40.82 4.75
1949 2014 5.243954 TCATATGGAGTACATGTCTAGCCAC 59.756 44.000 0.00 0.00 40.82 5.01
1950 2015 2.815158 TGGAGTACATGTCTAGCCACA 58.185 47.619 0.00 0.00 0.00 4.17
1951 2016 2.760650 TGGAGTACATGTCTAGCCACAG 59.239 50.000 0.00 0.00 0.00 3.66
1952 2017 2.482142 GGAGTACATGTCTAGCCACAGC 60.482 54.545 0.00 0.00 40.32 4.40
2022 2087 2.363406 GCTGCTGCCCCTTTGGAT 60.363 61.111 3.85 0.00 35.39 3.41
2045 2110 3.117888 GGATCCTTAACCAAGATGGCAGA 60.118 47.826 3.84 0.00 42.67 4.26
2126 2195 1.617850 TGCAAAACGGAGCCATGAATT 59.382 42.857 0.00 0.00 0.00 2.17
2127 2196 2.822561 TGCAAAACGGAGCCATGAATTA 59.177 40.909 0.00 0.00 0.00 1.40
2128 2197 3.256879 TGCAAAACGGAGCCATGAATTAA 59.743 39.130 0.00 0.00 0.00 1.40
2129 2198 4.081752 TGCAAAACGGAGCCATGAATTAAT 60.082 37.500 0.00 0.00 0.00 1.40
2287 2360 1.117994 TCATGCTCTCGGCTCTGAAT 58.882 50.000 0.00 0.00 42.39 2.57
2369 2454 1.021202 CGGTCAGGAAGTGTTTGCAA 58.979 50.000 0.00 0.00 0.00 4.08
2489 2579 1.929836 CGCATCTCTCCCTTTTTCTCG 59.070 52.381 0.00 0.00 0.00 4.04
2608 2706 3.794028 CGCTATGGACGAGAAGAAGAAAG 59.206 47.826 0.00 0.00 0.00 2.62
2669 3076 6.073058 TGCAGTAAAGATAAGAAACAGCACTG 60.073 38.462 0.00 0.00 34.29 3.66
2673 3080 7.819900 AGTAAAGATAAGAAACAGCACTGGTAG 59.180 37.037 2.21 0.00 34.19 3.18
2718 3125 0.826715 ACAGCGTCATGTGGCTCTAT 59.173 50.000 9.73 0.00 37.41 1.98
2773 3180 1.930908 GCTGGCCACTGCATTCACTC 61.931 60.000 11.92 0.00 40.80 3.51
2792 3199 3.436577 TCGTAGAGTCCTCCTCAAACT 57.563 47.619 0.00 0.00 43.12 2.66
2817 3224 8.820628 TCAACACATATAAGTAACGTACGTAC 57.179 34.615 23.12 18.46 0.00 3.67
2818 3225 8.664798 TCAACACATATAAGTAACGTACGTACT 58.335 33.333 23.12 20.25 0.00 2.73
2819 3226 9.914923 CAACACATATAAGTAACGTACGTACTA 57.085 33.333 23.12 8.64 0.00 1.82
2820 3227 9.916397 AACACATATAAGTAACGTACGTACTAC 57.084 33.333 23.12 20.22 0.00 2.73
2821 3228 9.314321 ACACATATAAGTAACGTACGTACTACT 57.686 33.333 23.12 22.10 0.00 2.57
2930 3340 1.091771 CGTGGCAAGGCATCACTAGG 61.092 60.000 0.00 0.00 0.00 3.02
2950 3360 2.025887 GGCAGATGAAAGGGAGAAGGAA 60.026 50.000 0.00 0.00 0.00 3.36
2951 3361 3.277715 GCAGATGAAAGGGAGAAGGAAG 58.722 50.000 0.00 0.00 0.00 3.46
3021 3432 7.851472 GTCTTTCTTTGCTTAGACTTTGTGTAC 59.149 37.037 0.00 0.00 35.33 2.90
3022 3433 7.769044 TCTTTCTTTGCTTAGACTTTGTGTACT 59.231 33.333 0.00 0.00 0.00 2.73
3023 3434 8.951787 TTTCTTTGCTTAGACTTTGTGTACTA 57.048 30.769 0.00 0.00 0.00 1.82
3030 3441 8.148351 TGCTTAGACTTTGTGTACTAGAAACAT 58.852 33.333 0.00 0.00 0.00 2.71
3041 3452 7.811236 TGTGTACTAGAAACATACGAAAAGGAG 59.189 37.037 0.00 0.00 0.00 3.69
3057 3468 6.127591 CGAAAAGGAGAAGAATAGGAGAGTGA 60.128 42.308 0.00 0.00 0.00 3.41
3064 3475 4.686191 AGAATAGGAGAGTGAAGCATGG 57.314 45.455 0.00 0.00 0.00 3.66
3102 3513 6.402766 GCGGCCGAAAATATATATAGCAACAA 60.403 38.462 33.48 0.00 0.00 2.83
3177 3590 0.519175 CGTCGTACAACGTACTCCCG 60.519 60.000 0.00 0.00 43.14 5.14
3255 3685 2.328099 GGCAGCGCTAGTTGTTGCT 61.328 57.895 10.99 7.52 38.43 3.91
3256 3686 1.019278 GGCAGCGCTAGTTGTTGCTA 61.019 55.000 10.99 0.00 35.56 3.49
3258 3688 1.267732 GCAGCGCTAGTTGTTGCTATG 60.268 52.381 10.99 0.00 35.56 2.23
3303 3736 2.158696 CGGTAGGCAGTAGTAGGTAGGT 60.159 54.545 0.00 0.00 0.00 3.08
3364 3800 4.285003 ACCTGCAACAGTGTTACTACCATA 59.715 41.667 8.49 0.00 0.00 2.74
3575 4012 3.068691 TCGACCCAAGAGAGGCCG 61.069 66.667 0.00 0.00 0.00 6.13
3643 4100 2.173669 ACACGCACAGCACAGACAC 61.174 57.895 0.00 0.00 0.00 3.67
3644 4101 2.173020 CACGCACAGCACAGACACA 61.173 57.895 0.00 0.00 0.00 3.72
3646 4103 2.601398 CGCACAGCACAGACACAGG 61.601 63.158 0.00 0.00 0.00 4.00
3647 4104 2.256591 GCACAGCACAGACACAGGG 61.257 63.158 0.00 0.00 0.00 4.45
3648 4105 2.111878 ACAGCACAGACACAGGGC 59.888 61.111 0.00 0.00 0.00 5.19
3649 4106 2.111669 CAGCACAGACACAGGGCA 59.888 61.111 0.00 0.00 0.00 5.36
3651 4108 3.349006 GCACAGACACAGGGCACG 61.349 66.667 0.00 0.00 0.00 5.34
3652 4109 2.108976 CACAGACACAGGGCACGT 59.891 61.111 0.00 0.00 0.00 4.49
3653 4110 1.365999 CACAGACACAGGGCACGTA 59.634 57.895 0.00 0.00 0.00 3.57
3654 4111 0.944311 CACAGACACAGGGCACGTAC 60.944 60.000 0.00 0.00 0.00 3.67
3655 4112 1.374252 CAGACACAGGGCACGTACC 60.374 63.158 0.00 0.00 0.00 3.34
3686 4446 4.838904 AAGCTAATTAACCCGAGGAAGT 57.161 40.909 0.00 0.00 0.00 3.01
3687 4447 4.138487 AGCTAATTAACCCGAGGAAGTG 57.862 45.455 0.00 0.00 0.00 3.16
3688 4448 3.518303 AGCTAATTAACCCGAGGAAGTGT 59.482 43.478 0.00 0.00 0.00 3.55
3690 4450 4.622220 GCTAATTAACCCGAGGAAGTGTCA 60.622 45.833 0.00 0.00 0.00 3.58
3801 4575 1.072331 TCTCTTGCCTTTCTTCCGCTT 59.928 47.619 0.00 0.00 0.00 4.68
3802 4576 1.466558 CTCTTGCCTTTCTTCCGCTTC 59.533 52.381 0.00 0.00 0.00 3.86
3803 4577 1.072331 TCTTGCCTTTCTTCCGCTTCT 59.928 47.619 0.00 0.00 0.00 2.85
3912 4697 3.005684 TGGATGTGTCTTTTGGTTGCATC 59.994 43.478 0.00 0.00 0.00 3.91
3955 4745 7.810658 AGTATGCTATTGTGCTATGCAATTAC 58.189 34.615 0.00 0.00 41.47 1.89
3956 4746 6.889301 ATGCTATTGTGCTATGCAATTACT 57.111 33.333 0.00 0.00 41.47 2.24
3957 4747 7.984422 ATGCTATTGTGCTATGCAATTACTA 57.016 32.000 0.00 0.00 41.47 1.82
3958 4748 7.189693 TGCTATTGTGCTATGCAATTACTAC 57.810 36.000 0.00 0.00 41.47 2.73
4016 4812 3.385749 ATGCACCGGGTCCATCGTC 62.386 63.158 6.32 0.00 0.00 4.20
4022 4818 2.105128 GGGTCCATCGTCTCAGCG 59.895 66.667 0.00 0.00 0.00 5.18
4045 4845 3.067461 TGCTGGCTGTAAAATTTCGTTGT 59.933 39.130 0.00 0.00 0.00 3.32
4051 4851 8.649973 TGGCTGTAAAATTTCGTTGTTTATTT 57.350 26.923 0.00 0.00 0.00 1.40
4052 4852 9.745880 TGGCTGTAAAATTTCGTTGTTTATTTA 57.254 25.926 0.00 0.00 0.00 1.40
4085 4888 8.924303 TGGTTGCACTTGATAGATTATACTAGT 58.076 33.333 0.00 0.00 0.00 2.57
4116 4921 6.432936 GCAATGGTGAATGACATATAGTGTG 58.567 40.000 0.00 0.00 42.36 3.82
4165 4970 2.415843 GCCGCGCTGGAGTACATA 59.584 61.111 20.06 0.00 42.00 2.29
4351 5156 2.183300 GCGTCGTCCACCTGCATA 59.817 61.111 0.00 0.00 0.00 3.14
4354 5159 1.651987 CGTCGTCCACCTGCATAATT 58.348 50.000 0.00 0.00 0.00 1.40
4369 5174 3.058639 GCATAATTCCTTCCTGCATCGTC 60.059 47.826 0.00 0.00 33.13 4.20
5038 5865 0.671781 CAGACACAAGGAAGCTCCCG 60.672 60.000 0.00 0.00 37.19 5.14
5069 5905 2.480555 GTACGTGCATGCCACTGC 59.519 61.111 16.68 0.00 42.42 4.40
5083 5919 4.864334 CTGCCGGGACCCATGCTC 62.864 72.222 19.80 1.43 0.00 4.26
5114 5950 3.717294 CCCTTGTCCGACCCTGGG 61.717 72.222 12.28 12.28 0.00 4.45
5246 6094 2.009108 CTTCTGCGTGCGTGCATAT 58.991 52.632 2.93 0.00 45.26 1.78
5306 6157 7.321153 TCTACTTTGACTTTACATGGAGTAGC 58.679 38.462 0.00 0.00 36.76 3.58
5329 6180 6.321435 AGCTGTATGACACATAGTTAGCACTA 59.679 38.462 16.80 0.00 39.94 2.74
5368 6219 2.838386 ATTATGAGCGCTGTTTGCTG 57.162 45.000 18.48 0.00 44.18 4.41
5374 6225 2.281761 CGCTGTTTGCTGGGAGGT 60.282 61.111 0.00 0.00 40.11 3.85
5375 6226 2.328099 CGCTGTTTGCTGGGAGGTC 61.328 63.158 0.00 0.00 40.11 3.85
5376 6227 2.328099 GCTGTTTGCTGGGAGGTCG 61.328 63.158 0.00 0.00 38.95 4.79
5377 6228 1.672356 CTGTTTGCTGGGAGGTCGG 60.672 63.158 0.00 0.00 0.00 4.79
5378 6229 2.397413 CTGTTTGCTGGGAGGTCGGT 62.397 60.000 0.00 0.00 0.00 4.69
5379 6230 1.671379 GTTTGCTGGGAGGTCGGTC 60.671 63.158 0.00 0.00 0.00 4.79
5380 6231 1.841556 TTTGCTGGGAGGTCGGTCT 60.842 57.895 0.00 0.00 0.00 3.85
5381 6232 0.543410 TTTGCTGGGAGGTCGGTCTA 60.543 55.000 0.00 0.00 0.00 2.59
5407 6261 3.207669 GGGCATTGCTCTGCTCGG 61.208 66.667 8.82 0.00 41.95 4.63
5408 6262 3.885521 GGCATTGCTCTGCTCGGC 61.886 66.667 8.82 0.00 41.95 5.54
5411 6265 1.519234 CATTGCTCTGCTCGGCGTA 60.519 57.895 6.85 0.00 0.00 4.42
5413 6267 1.949847 ATTGCTCTGCTCGGCGTAGT 61.950 55.000 6.85 0.00 0.00 2.73
5459 6313 1.794512 ATTTGATGTGCGTTTTGGGC 58.205 45.000 0.00 0.00 0.00 5.36
5465 6319 1.365633 GTGCGTTTTGGGCATGGAA 59.634 52.632 0.00 0.00 43.19 3.53
5470 6324 0.667184 GTTTTGGGCATGGAACTGCG 60.667 55.000 0.00 0.00 43.23 5.18
5471 6325 1.814772 TTTTGGGCATGGAACTGCGG 61.815 55.000 0.00 0.00 43.23 5.69
5472 6326 2.992817 TTTGGGCATGGAACTGCGGT 62.993 55.000 0.00 0.00 43.23 5.68
5473 6327 2.130821 TTGGGCATGGAACTGCGGTA 62.131 55.000 0.00 0.00 43.23 4.02
5474 6328 2.112815 GGGCATGGAACTGCGGTAC 61.113 63.158 0.00 0.00 43.23 3.34
5475 6329 1.078426 GGCATGGAACTGCGGTACT 60.078 57.895 0.00 0.00 43.23 2.73
5494 6354 3.567397 ACTAGTACGAATGATGAGGCCT 58.433 45.455 3.86 3.86 0.00 5.19
5514 6375 1.144936 GGGAAGGAGACATGGCTCG 59.855 63.158 22.33 0.00 35.74 5.03
5622 6483 0.469892 ATCATTGCCCCGGGAATTCC 60.470 55.000 26.32 16.74 33.94 3.01
5640 6509 2.563427 GCGCACTGCTTTCCCTTC 59.437 61.111 0.30 0.00 41.73 3.46
5641 6510 2.982744 GCGCACTGCTTTCCCTTCC 61.983 63.158 0.30 0.00 41.73 3.46
5642 6511 2.335712 CGCACTGCTTTCCCTTCCC 61.336 63.158 0.00 0.00 0.00 3.97
5643 6512 1.075659 GCACTGCTTTCCCTTCCCT 59.924 57.895 0.00 0.00 0.00 4.20
5644 6513 0.540597 GCACTGCTTTCCCTTCCCTT 60.541 55.000 0.00 0.00 0.00 3.95
5645 6514 1.251251 CACTGCTTTCCCTTCCCTTG 58.749 55.000 0.00 0.00 0.00 3.61
5646 6515 0.540597 ACTGCTTTCCCTTCCCTTGC 60.541 55.000 0.00 0.00 0.00 4.01
5647 6516 0.251519 CTGCTTTCCCTTCCCTTGCT 60.252 55.000 0.00 0.00 0.00 3.91
5648 6517 0.188342 TGCTTTCCCTTCCCTTGCTT 59.812 50.000 0.00 0.00 0.00 3.91
5772 6672 1.324740 CGATACCTGTTCGTGGGGGA 61.325 60.000 0.00 0.00 32.08 4.81
5850 6753 3.873361 CCGACTGCAGTTACAATGATCAT 59.127 43.478 22.65 1.18 0.00 2.45
5851 6754 4.025396 CCGACTGCAGTTACAATGATCATC 60.025 45.833 22.65 1.84 0.00 2.92
5852 6755 4.567959 CGACTGCAGTTACAATGATCATCA 59.432 41.667 22.65 0.00 0.00 3.07
5873 6776 1.226974 CTTCATGCATGCTGCCTGC 60.227 57.895 22.25 20.82 44.23 4.85
5948 6854 2.028930 CGAGGGAAGCTGGATATGGTAC 60.029 54.545 0.00 0.00 0.00 3.34
5949 6855 3.243724 GAGGGAAGCTGGATATGGTACT 58.756 50.000 0.00 0.00 0.00 2.73
5950 6856 4.417437 GAGGGAAGCTGGATATGGTACTA 58.583 47.826 0.00 0.00 0.00 1.82
5951 6857 4.827789 AGGGAAGCTGGATATGGTACTAA 58.172 43.478 0.00 0.00 0.00 2.24
5952 6858 4.841246 AGGGAAGCTGGATATGGTACTAAG 59.159 45.833 0.00 0.00 0.00 2.18
5953 6859 4.020128 GGGAAGCTGGATATGGTACTAAGG 60.020 50.000 0.00 0.00 0.00 2.69
5954 6860 4.020128 GGAAGCTGGATATGGTACTAAGGG 60.020 50.000 0.00 0.00 0.00 3.95
5955 6861 2.907042 AGCTGGATATGGTACTAAGGGC 59.093 50.000 0.00 0.00 0.00 5.19
5956 6862 2.637872 GCTGGATATGGTACTAAGGGCA 59.362 50.000 0.00 0.00 0.00 5.36
5957 6863 3.072476 GCTGGATATGGTACTAAGGGCAA 59.928 47.826 0.00 0.00 0.00 4.52
5958 6864 4.642429 CTGGATATGGTACTAAGGGCAAC 58.358 47.826 0.00 0.00 0.00 4.17
5959 6865 4.303794 TGGATATGGTACTAAGGGCAACT 58.696 43.478 0.00 0.00 0.00 3.16
5960 6866 4.347000 TGGATATGGTACTAAGGGCAACTC 59.653 45.833 0.00 0.00 0.00 3.01
5961 6867 4.593634 GGATATGGTACTAAGGGCAACTCT 59.406 45.833 0.00 0.00 0.00 3.24
5962 6868 5.778750 GGATATGGTACTAAGGGCAACTCTA 59.221 44.000 0.00 0.00 0.00 2.43
5963 6869 6.269307 GGATATGGTACTAAGGGCAACTCTAA 59.731 42.308 0.00 0.00 0.00 2.10
5964 6870 4.813750 TGGTACTAAGGGCAACTCTAAC 57.186 45.455 0.00 0.00 0.00 2.34
5965 6871 3.516700 TGGTACTAAGGGCAACTCTAACC 59.483 47.826 0.00 0.00 0.00 2.85
5966 6872 3.118482 GGTACTAAGGGCAACTCTAACCC 60.118 52.174 0.00 0.00 44.62 4.11
5967 6873 2.627933 ACTAAGGGCAACTCTAACCCA 58.372 47.619 0.00 0.00 46.88 4.51
5968 6874 3.190439 ACTAAGGGCAACTCTAACCCAT 58.810 45.455 0.00 0.00 46.88 4.00
5969 6875 2.808906 AAGGGCAACTCTAACCCATC 57.191 50.000 0.00 0.00 46.88 3.51
5970 6876 0.919710 AGGGCAACTCTAACCCATCC 59.080 55.000 0.00 0.00 46.88 3.51
5971 6877 0.919710 GGGCAACTCTAACCCATCCT 59.080 55.000 0.00 0.00 43.64 3.24
5972 6878 1.285078 GGGCAACTCTAACCCATCCTT 59.715 52.381 0.00 0.00 43.64 3.36
5973 6879 2.291605 GGGCAACTCTAACCCATCCTTT 60.292 50.000 0.00 0.00 43.64 3.11
5974 6880 3.053917 GGGCAACTCTAACCCATCCTTTA 60.054 47.826 0.00 0.00 43.64 1.85
5975 6881 4.386424 GGGCAACTCTAACCCATCCTTTAT 60.386 45.833 0.00 0.00 43.64 1.40
5976 6882 5.163131 GGGCAACTCTAACCCATCCTTTATA 60.163 44.000 0.00 0.00 43.64 0.98
5977 6883 6.362248 GGCAACTCTAACCCATCCTTTATAA 58.638 40.000 0.00 0.00 0.00 0.98
5978 6884 6.486993 GGCAACTCTAACCCATCCTTTATAAG 59.513 42.308 0.00 0.00 0.00 1.73
5979 6885 7.054751 GCAACTCTAACCCATCCTTTATAAGT 58.945 38.462 0.00 0.00 0.00 2.24
5980 6886 7.556635 GCAACTCTAACCCATCCTTTATAAGTT 59.443 37.037 0.00 0.00 0.00 2.66
5983 6889 9.503369 ACTCTAACCCATCCTTTATAAGTTAGT 57.497 33.333 13.74 2.09 35.64 2.24
5984 6890 9.765795 CTCTAACCCATCCTTTATAAGTTAGTG 57.234 37.037 13.74 10.05 35.64 2.74
5985 6891 8.711170 TCTAACCCATCCTTTATAAGTTAGTGG 58.289 37.037 13.74 7.98 35.64 4.00
5986 6892 7.519347 AACCCATCCTTTATAAGTTAGTGGA 57.481 36.000 7.26 0.00 0.00 4.02
5987 6893 7.138054 ACCCATCCTTTATAAGTTAGTGGAG 57.862 40.000 7.26 2.64 0.00 3.86
5988 6894 6.677076 ACCCATCCTTTATAAGTTAGTGGAGT 59.323 38.462 7.26 3.05 0.00 3.85
5989 6895 7.847848 ACCCATCCTTTATAAGTTAGTGGAGTA 59.152 37.037 7.26 0.00 0.00 2.59
5990 6896 8.881262 CCCATCCTTTATAAGTTAGTGGAGTAT 58.119 37.037 7.26 0.00 0.00 2.12
6002 6908 8.638629 AGTTAGTGGAGTATATATTCTTCGCT 57.361 34.615 15.61 15.61 34.80 4.93
6003 6909 9.736414 AGTTAGTGGAGTATATATTCTTCGCTA 57.264 33.333 13.98 13.98 32.97 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.368641 TTCATTCAGGATTGGACGCG 58.631 50.000 3.53 3.53 0.00 6.01
68 69 1.813786 ACCAAGTAGTCTCTCTCGTGC 59.186 52.381 0.00 0.00 0.00 5.34
107 111 0.034059 CTGACTGCACGGTTCCTCTT 59.966 55.000 0.00 0.00 0.00 2.85
136 140 0.652592 GAATCAATCAGTGACGGCCG 59.347 55.000 26.86 26.86 39.72 6.13
137 141 0.652592 CGAATCAATCAGTGACGGCC 59.347 55.000 0.00 0.00 39.72 6.13
138 142 1.590238 CTCGAATCAATCAGTGACGGC 59.410 52.381 0.00 0.00 39.72 5.68
139 143 2.881074 ACTCGAATCAATCAGTGACGG 58.119 47.619 0.00 0.00 39.72 4.79
140 144 3.920412 TCAACTCGAATCAATCAGTGACG 59.080 43.478 0.00 0.00 39.72 4.35
200 204 0.537188 TGGCTCGAGAAAGGATGGAC 59.463 55.000 18.75 0.00 0.00 4.02
267 271 3.851845 TTTCGTCGCGTCAGTGGGG 62.852 63.158 5.77 0.00 0.00 4.96
288 292 9.467258 TGCATAAACAGAAAAGAGAAAAGAATG 57.533 29.630 0.00 0.00 0.00 2.67
308 312 3.326006 TGGGCATTGTTTTCCTTGCATAA 59.674 39.130 0.00 0.00 36.82 1.90
343 359 3.367703 CGCTGAAGAAGATGGGCATTTTT 60.368 43.478 0.00 0.00 0.00 1.94
344 360 2.165030 CGCTGAAGAAGATGGGCATTTT 59.835 45.455 0.00 0.00 0.00 1.82
345 361 1.747355 CGCTGAAGAAGATGGGCATTT 59.253 47.619 0.00 0.00 0.00 2.32
346 362 1.065199 TCGCTGAAGAAGATGGGCATT 60.065 47.619 0.00 0.00 0.00 3.56
347 363 0.543277 TCGCTGAAGAAGATGGGCAT 59.457 50.000 0.00 0.00 0.00 4.40
348 364 0.107993 CTCGCTGAAGAAGATGGGCA 60.108 55.000 0.00 0.00 0.00 5.36
349 365 0.813210 CCTCGCTGAAGAAGATGGGC 60.813 60.000 0.00 0.00 0.00 5.36
350 366 0.826715 TCCTCGCTGAAGAAGATGGG 59.173 55.000 0.00 0.00 0.00 4.00
351 367 2.364970 AGATCCTCGCTGAAGAAGATGG 59.635 50.000 0.00 0.00 0.00 3.51
352 368 3.731652 AGATCCTCGCTGAAGAAGATG 57.268 47.619 0.00 0.00 0.00 2.90
353 369 5.335583 CGATAAGATCCTCGCTGAAGAAGAT 60.336 44.000 0.00 0.00 0.00 2.40
354 370 4.023622 CGATAAGATCCTCGCTGAAGAAGA 60.024 45.833 0.00 0.00 0.00 2.87
355 371 4.023622 TCGATAAGATCCTCGCTGAAGAAG 60.024 45.833 5.35 0.00 34.94 2.85
356 372 3.883489 TCGATAAGATCCTCGCTGAAGAA 59.117 43.478 5.35 0.00 34.94 2.52
357 373 3.477530 TCGATAAGATCCTCGCTGAAGA 58.522 45.455 5.35 0.00 34.94 2.87
362 378 4.551388 GTTGATTCGATAAGATCCTCGCT 58.449 43.478 5.35 0.00 34.94 4.93
367 383 8.930760 CAATTAGAGGTTGATTCGATAAGATCC 58.069 37.037 0.00 0.00 0.00 3.36
399 415 6.183360 GGACATTGATTGAGAAAATAGTGGGG 60.183 42.308 0.00 0.00 0.00 4.96
477 498 8.999431 ACTCGTACAAATGACTGAAAATATTGT 58.001 29.630 0.00 0.00 34.31 2.71
478 499 9.825972 AACTCGTACAAATGACTGAAAATATTG 57.174 29.630 0.00 0.00 0.00 1.90
483 504 7.211573 TCCTAACTCGTACAAATGACTGAAAA 58.788 34.615 0.00 0.00 0.00 2.29
484 505 6.751157 TCCTAACTCGTACAAATGACTGAAA 58.249 36.000 0.00 0.00 0.00 2.69
485 506 6.335471 TCCTAACTCGTACAAATGACTGAA 57.665 37.500 0.00 0.00 0.00 3.02
486 507 5.970317 TCCTAACTCGTACAAATGACTGA 57.030 39.130 0.00 0.00 0.00 3.41
487 508 7.596749 AATTCCTAACTCGTACAAATGACTG 57.403 36.000 0.00 0.00 0.00 3.51
492 513 9.998106 AGCATATAATTCCTAACTCGTACAAAT 57.002 29.630 0.00 0.00 0.00 2.32
493 514 9.826574 AAGCATATAATTCCTAACTCGTACAAA 57.173 29.630 0.00 0.00 0.00 2.83
494 515 9.826574 AAAGCATATAATTCCTAACTCGTACAA 57.173 29.630 0.00 0.00 0.00 2.41
495 516 9.826574 AAAAGCATATAATTCCTAACTCGTACA 57.173 29.630 0.00 0.00 0.00 2.90
498 519 8.129211 GCAAAAAGCATATAATTCCTAACTCGT 58.871 33.333 0.00 0.00 44.79 4.18
499 520 7.321271 CGCAAAAAGCATATAATTCCTAACTCG 59.679 37.037 0.00 0.00 46.13 4.18
500 521 8.129211 ACGCAAAAAGCATATAATTCCTAACTC 58.871 33.333 0.00 0.00 46.13 3.01
501 522 7.915397 CACGCAAAAAGCATATAATTCCTAACT 59.085 33.333 0.00 0.00 46.13 2.24
502 523 7.913297 TCACGCAAAAAGCATATAATTCCTAAC 59.087 33.333 0.00 0.00 46.13 2.34
503 524 7.990917 TCACGCAAAAAGCATATAATTCCTAA 58.009 30.769 0.00 0.00 46.13 2.69
504 525 7.497579 TCTCACGCAAAAAGCATATAATTCCTA 59.502 33.333 0.00 0.00 46.13 2.94
505 526 6.318648 TCTCACGCAAAAAGCATATAATTCCT 59.681 34.615 0.00 0.00 46.13 3.36
506 527 6.494842 TCTCACGCAAAAAGCATATAATTCC 58.505 36.000 0.00 0.00 46.13 3.01
507 528 8.566008 AATCTCACGCAAAAAGCATATAATTC 57.434 30.769 0.00 0.00 46.13 2.17
508 529 8.931385 AAATCTCACGCAAAAAGCATATAATT 57.069 26.923 0.00 0.00 46.13 1.40
509 530 8.190122 TGAAATCTCACGCAAAAAGCATATAAT 58.810 29.630 0.00 0.00 46.13 1.28
510 531 7.534282 TGAAATCTCACGCAAAAAGCATATAA 58.466 30.769 0.00 0.00 46.13 0.98
511 532 7.082700 TGAAATCTCACGCAAAAAGCATATA 57.917 32.000 0.00 0.00 46.13 0.86
512 533 5.953183 TGAAATCTCACGCAAAAAGCATAT 58.047 33.333 0.00 0.00 46.13 1.78
513 534 5.369685 TGAAATCTCACGCAAAAAGCATA 57.630 34.783 0.00 0.00 46.13 3.14
514 535 4.232221 CTGAAATCTCACGCAAAAAGCAT 58.768 39.130 0.00 0.00 46.13 3.79
515 536 3.631144 CTGAAATCTCACGCAAAAAGCA 58.369 40.909 0.00 0.00 46.13 3.91
516 537 2.406357 GCTGAAATCTCACGCAAAAAGC 59.594 45.455 0.00 0.00 40.87 3.51
517 538 3.667261 CAGCTGAAATCTCACGCAAAAAG 59.333 43.478 8.42 0.00 31.78 2.27
518 539 3.066621 ACAGCTGAAATCTCACGCAAAAA 59.933 39.130 23.35 0.00 31.78 1.94
519 540 2.618241 ACAGCTGAAATCTCACGCAAAA 59.382 40.909 23.35 0.00 31.78 2.44
520 541 2.221169 ACAGCTGAAATCTCACGCAAA 58.779 42.857 23.35 0.00 31.78 3.68
521 542 1.882912 ACAGCTGAAATCTCACGCAA 58.117 45.000 23.35 0.00 31.78 4.85
522 543 1.800586 GAACAGCTGAAATCTCACGCA 59.199 47.619 23.35 0.00 31.78 5.24
523 544 1.800586 TGAACAGCTGAAATCTCACGC 59.199 47.619 23.35 0.00 0.00 5.34
524 545 4.472691 TTTGAACAGCTGAAATCTCACG 57.527 40.909 23.35 0.00 0.00 4.35
525 546 6.211515 ACATTTTGAACAGCTGAAATCTCAC 58.788 36.000 23.35 2.86 0.00 3.51
526 547 6.395426 ACATTTTGAACAGCTGAAATCTCA 57.605 33.333 23.35 11.38 0.00 3.27
527 548 7.810658 TCTACATTTTGAACAGCTGAAATCTC 58.189 34.615 23.35 8.91 0.00 2.75
528 549 7.750229 TCTACATTTTGAACAGCTGAAATCT 57.250 32.000 23.35 6.19 0.00 2.40
529 550 8.976986 AATCTACATTTTGAACAGCTGAAATC 57.023 30.769 23.35 15.48 0.00 2.17
532 553 9.844790 CATAAATCTACATTTTGAACAGCTGAA 57.155 29.630 23.35 3.60 33.95 3.02
533 554 9.013229 ACATAAATCTACATTTTGAACAGCTGA 57.987 29.630 23.35 0.00 33.95 4.26
534 555 9.630098 AACATAAATCTACATTTTGAACAGCTG 57.370 29.630 13.48 13.48 33.95 4.24
583 604 9.874215 CACGTCTCGATTAAATATGTTCTACTA 57.126 33.333 0.00 0.00 0.00 1.82
584 605 7.378995 GCACGTCTCGATTAAATATGTTCTACT 59.621 37.037 0.00 0.00 0.00 2.57
585 606 7.491683 GCACGTCTCGATTAAATATGTTCTAC 58.508 38.462 0.00 0.00 0.00 2.59
586 607 6.358822 CGCACGTCTCGATTAAATATGTTCTA 59.641 38.462 0.82 0.00 0.00 2.10
587 608 5.173312 CGCACGTCTCGATTAAATATGTTCT 59.827 40.000 0.82 0.00 0.00 3.01
588 609 5.051907 ACGCACGTCTCGATTAAATATGTTC 60.052 40.000 12.91 0.00 0.00 3.18
589 610 4.802039 ACGCACGTCTCGATTAAATATGTT 59.198 37.500 12.91 0.00 0.00 2.71
590 611 4.357142 ACGCACGTCTCGATTAAATATGT 58.643 39.130 12.91 0.00 0.00 2.29
591 612 4.948864 ACGCACGTCTCGATTAAATATG 57.051 40.909 12.91 0.00 0.00 1.78
592 613 5.038683 TCAACGCACGTCTCGATTAAATAT 58.961 37.500 12.91 0.00 0.00 1.28
593 614 4.413969 TCAACGCACGTCTCGATTAAATA 58.586 39.130 12.91 0.00 0.00 1.40
594 615 3.247442 TCAACGCACGTCTCGATTAAAT 58.753 40.909 12.91 0.00 0.00 1.40
595 616 2.663808 TCAACGCACGTCTCGATTAAA 58.336 42.857 12.91 0.00 0.00 1.52
596 617 2.334971 TCAACGCACGTCTCGATTAA 57.665 45.000 12.91 0.00 0.00 1.40
597 618 2.334971 TTCAACGCACGTCTCGATTA 57.665 45.000 12.91 0.00 0.00 1.75
598 619 1.390123 CATTCAACGCACGTCTCGATT 59.610 47.619 12.91 2.36 0.00 3.34
599 620 0.992072 CATTCAACGCACGTCTCGAT 59.008 50.000 12.91 0.00 0.00 3.59
600 621 0.318360 ACATTCAACGCACGTCTCGA 60.318 50.000 12.91 0.00 0.00 4.04
601 622 0.179275 CACATTCAACGCACGTCTCG 60.179 55.000 0.00 5.32 0.00 4.04
602 623 0.451135 GCACATTCAACGCACGTCTC 60.451 55.000 0.00 0.00 0.00 3.36
603 624 1.157257 TGCACATTCAACGCACGTCT 61.157 50.000 0.00 0.00 0.00 4.18
604 625 0.110238 ATGCACATTCAACGCACGTC 60.110 50.000 0.00 0.00 38.73 4.34
605 626 0.385849 CATGCACATTCAACGCACGT 60.386 50.000 0.00 0.00 38.73 4.49
606 627 1.667349 GCATGCACATTCAACGCACG 61.667 55.000 14.21 0.00 38.73 5.34
607 628 0.387622 AGCATGCACATTCAACGCAC 60.388 50.000 21.98 0.00 38.73 5.34
608 629 0.314618 AAGCATGCACATTCAACGCA 59.685 45.000 21.98 0.00 40.50 5.24
609 630 1.913403 GTAAGCATGCACATTCAACGC 59.087 47.619 21.98 0.00 0.00 4.84
610 631 3.476295 AGTAAGCATGCACATTCAACG 57.524 42.857 21.98 0.00 0.00 4.10
611 632 5.551760 ACTAGTAAGCATGCACATTCAAC 57.448 39.130 21.98 6.69 0.00 3.18
613 634 9.639601 GTATATACTAGTAAGCATGCACATTCA 57.360 33.333 21.98 0.00 0.00 2.57
614 635 9.862371 AGTATATACTAGTAAGCATGCACATTC 57.138 33.333 21.98 5.42 34.13 2.67
631 652 8.584157 ACTACGACAGCACTACTAGTATATACT 58.416 37.037 19.07 19.07 40.24 2.12
632 653 8.755696 ACTACGACAGCACTACTAGTATATAC 57.244 38.462 2.33 4.60 0.00 1.47
634 655 7.545265 GCTACTACGACAGCACTACTAGTATAT 59.455 40.741 2.33 0.00 37.73 0.86
635 656 6.865726 GCTACTACGACAGCACTACTAGTATA 59.134 42.308 2.33 0.00 37.73 1.47
636 657 5.695816 GCTACTACGACAGCACTACTAGTAT 59.304 44.000 2.33 0.00 37.73 2.12
637 658 5.046529 GCTACTACGACAGCACTACTAGTA 58.953 45.833 1.89 1.89 37.73 1.82
638 659 3.870419 GCTACTACGACAGCACTACTAGT 59.130 47.826 0.00 0.00 37.73 2.57
639 660 3.060406 CGCTACTACGACAGCACTACTAG 60.060 52.174 0.00 0.00 37.66 2.57
640 661 2.862536 CGCTACTACGACAGCACTACTA 59.137 50.000 0.00 0.00 37.66 1.82
641 662 1.664659 CGCTACTACGACAGCACTACT 59.335 52.381 0.00 0.00 37.66 2.57
642 663 1.267932 CCGCTACTACGACAGCACTAC 60.268 57.143 0.00 0.00 37.66 2.73
643 664 1.012086 CCGCTACTACGACAGCACTA 58.988 55.000 0.00 0.00 37.66 2.74
644 665 1.654954 CCCGCTACTACGACAGCACT 61.655 60.000 0.00 0.00 37.66 4.40
645 666 1.226603 CCCGCTACTACGACAGCAC 60.227 63.158 0.00 0.00 37.66 4.40
646 667 1.374343 CTCCCGCTACTACGACAGCA 61.374 60.000 0.00 0.00 37.66 4.41
647 668 1.355916 CTCCCGCTACTACGACAGC 59.644 63.158 0.00 0.00 34.06 4.40
648 669 1.063764 GAACTCCCGCTACTACGACAG 59.936 57.143 0.00 0.00 34.06 3.51
649 670 1.089920 GAACTCCCGCTACTACGACA 58.910 55.000 0.00 0.00 34.06 4.35
652 673 2.935481 AAAGAACTCCCGCTACTACG 57.065 50.000 0.00 0.00 0.00 3.51
688 709 0.193574 ACTCCCACTTTCCCTCAGGA 59.806 55.000 0.00 0.00 41.88 3.86
689 710 1.003696 GAACTCCCACTTTCCCTCAGG 59.996 57.143 0.00 0.00 0.00 3.86
690 711 1.981495 AGAACTCCCACTTTCCCTCAG 59.019 52.381 0.00 0.00 0.00 3.35
692 713 5.952347 TTATAGAACTCCCACTTTCCCTC 57.048 43.478 0.00 0.00 0.00 4.30
693 714 6.504279 TCTTTTATAGAACTCCCACTTTCCCT 59.496 38.462 0.00 0.00 0.00 4.20
694 715 6.718294 TCTTTTATAGAACTCCCACTTTCCC 58.282 40.000 0.00 0.00 0.00 3.97
707 728 9.677567 GTGCTGACATTTTGTTCTTTTATAGAA 57.322 29.630 0.00 0.00 40.57 2.10
708 729 8.296713 GGTGCTGACATTTTGTTCTTTTATAGA 58.703 33.333 0.00 0.00 0.00 1.98
709 730 7.542130 GGGTGCTGACATTTTGTTCTTTTATAG 59.458 37.037 0.00 0.00 0.00 1.31
886 911 2.725641 GTTGGGTGCGTGGGTTTC 59.274 61.111 0.00 0.00 0.00 2.78
887 912 2.835895 GGTTGGGTGCGTGGGTTT 60.836 61.111 0.00 0.00 0.00 3.27
936 965 4.120331 GATGTGGCAAGTGCGGGC 62.120 66.667 0.00 0.00 43.26 6.13
1521 1575 1.229082 AAGGAGGAGGTGGCGTACA 60.229 57.895 0.00 0.00 0.00 2.90
1522 1576 1.516423 GAAGGAGGAGGTGGCGTAC 59.484 63.158 0.00 0.00 0.00 3.67
1575 1629 6.420455 GAAAAAGTTCGATTTTTCGAGGTG 57.580 37.500 16.85 0.00 44.61 4.00
1589 1647 8.831550 ACAGAAACAGAGACTATGAAAAAGTTC 58.168 33.333 3.62 0.00 0.00 3.01
1634 1692 4.527509 TCAAACCTTGCACTTGTTGAAA 57.472 36.364 0.00 0.00 0.00 2.69
1635 1693 4.681744 GATCAAACCTTGCACTTGTTGAA 58.318 39.130 6.25 0.00 0.00 2.69
1636 1694 3.243035 CGATCAAACCTTGCACTTGTTGA 60.243 43.478 4.96 4.96 0.00 3.18
1637 1695 3.044986 CGATCAAACCTTGCACTTGTTG 58.955 45.455 0.00 0.00 0.00 3.33
1643 1708 3.575965 AAATCCGATCAAACCTTGCAC 57.424 42.857 0.00 0.00 0.00 4.57
1658 1723 6.976349 CCGTTGGTTTTAGCCTAATAAAATCC 59.024 38.462 1.06 3.22 35.69 3.01
1665 1730 4.023726 TCACCGTTGGTTTTAGCCTAAT 57.976 40.909 0.00 0.00 31.02 1.73
1759 1824 0.534412 ACAGATGAAGCCGACTGGAG 59.466 55.000 0.00 0.00 37.49 3.86
1760 1825 0.976641 AACAGATGAAGCCGACTGGA 59.023 50.000 0.00 0.00 37.49 3.86
1761 1826 1.734465 GAAACAGATGAAGCCGACTGG 59.266 52.381 0.00 0.00 35.08 4.00
1762 1827 2.158449 GTGAAACAGATGAAGCCGACTG 59.842 50.000 0.00 0.00 36.32 3.51
1763 1828 2.037772 AGTGAAACAGATGAAGCCGACT 59.962 45.455 0.00 0.00 41.43 4.18
1922 1987 7.673926 TGGCTAGACATGTACTCCATATGAATA 59.326 37.037 3.65 0.00 30.71 1.75
1936 2001 1.200760 TGGGCTGTGGCTAGACATGT 61.201 55.000 0.00 0.00 38.73 3.21
1938 2003 1.200760 TGTGGGCTGTGGCTAGACAT 61.201 55.000 0.00 0.00 38.73 3.06
1949 2014 4.729918 GAGGGGCACTGTGGGCTG 62.730 72.222 10.21 0.00 0.00 4.85
1951 2016 4.052518 ATGAGGGGCACTGTGGGC 62.053 66.667 10.21 2.79 0.00 5.36
1952 2017 2.273449 GATGAGGGGCACTGTGGG 59.727 66.667 10.21 0.00 0.00 4.61
1995 2060 1.660560 GGGCAGCAGCAATCGATGTT 61.661 55.000 2.65 0.00 44.61 2.71
2022 2087 2.580322 TGCCATCTTGGTTAAGGATCCA 59.420 45.455 15.82 0.00 40.46 3.41
2045 2110 2.769209 AGGAAGCTATCTCCATGGTGT 58.231 47.619 12.58 3.07 0.00 4.16
2126 2195 7.958567 GTCGTCGTTTGGATGTTTATTTCATTA 59.041 33.333 0.00 0.00 33.20 1.90
2127 2196 6.799925 GTCGTCGTTTGGATGTTTATTTCATT 59.200 34.615 0.00 0.00 33.20 2.57
2128 2197 6.072948 TGTCGTCGTTTGGATGTTTATTTCAT 60.073 34.615 0.00 0.00 33.20 2.57
2129 2198 5.236695 TGTCGTCGTTTGGATGTTTATTTCA 59.763 36.000 0.00 0.00 33.20 2.69
2146 2215 0.670546 AACAGGGCAAGATGTCGTCG 60.671 55.000 0.00 0.00 0.00 5.12
2147 2216 1.464997 GAAACAGGGCAAGATGTCGTC 59.535 52.381 0.00 0.00 0.00 4.20
2148 2217 1.072331 AGAAACAGGGCAAGATGTCGT 59.928 47.619 0.00 0.00 0.00 4.34
2261 2334 1.222766 GCCGAGAGCATGATCAGCAG 61.223 60.000 14.38 0.00 42.97 4.24
2307 2384 1.265095 GATGATAATGTGGGCGTGCAG 59.735 52.381 0.00 0.00 0.00 4.41
2348 2433 0.586802 GCAAACACTTCCTGACCGAC 59.413 55.000 0.00 0.00 0.00 4.79
2349 2434 0.179234 TGCAAACACTTCCTGACCGA 59.821 50.000 0.00 0.00 0.00 4.69
2350 2435 1.002468 CTTGCAAACACTTCCTGACCG 60.002 52.381 0.00 0.00 0.00 4.79
2351 2436 2.024414 ACTTGCAAACACTTCCTGACC 58.976 47.619 0.00 0.00 0.00 4.02
2489 2579 0.387239 GTCGGCAGGCACAAAATGAC 60.387 55.000 0.00 0.00 36.02 3.06
2628 2726 4.783764 ACTGCACATTTTAGTAAAGGCC 57.216 40.909 0.00 0.00 0.00 5.19
2669 3076 4.056050 CAATCGTAGCCACCAATACTACC 58.944 47.826 0.00 0.00 34.14 3.18
2673 3080 2.544267 GAGCAATCGTAGCCACCAATAC 59.456 50.000 0.00 0.00 0.00 1.89
2718 3125 1.137479 CCGGACTAGCGGGTAAATTGA 59.863 52.381 0.00 0.00 32.60 2.57
2773 3180 3.082548 TGAGTTTGAGGAGGACTCTACG 58.917 50.000 0.00 0.00 46.72 3.51
2785 3192 8.922676 ACGTTACTTATATGTGTTGAGTTTGAG 58.077 33.333 1.63 0.00 0.00 3.02
2790 3197 7.530010 ACGTACGTTACTTATATGTGTTGAGT 58.470 34.615 16.72 0.00 0.00 3.41
2791 3198 7.959718 ACGTACGTTACTTATATGTGTTGAG 57.040 36.000 16.72 0.00 0.00 3.02
2792 3199 8.664798 AGTACGTACGTTACTTATATGTGTTGA 58.335 33.333 27.92 0.00 0.00 3.18
2844 3251 6.432472 AGAAACATGAAAAGAGAGGAACATCC 59.568 38.462 0.00 0.00 36.58 3.51
2930 3340 3.277715 CTTCCTTCTCCCTTTCATCTGC 58.722 50.000 0.00 0.00 0.00 4.26
2950 3360 1.336755 GTTTGTTCCAACATCACGCCT 59.663 47.619 0.00 0.00 38.95 5.52
2951 3361 1.336755 AGTTTGTTCCAACATCACGCC 59.663 47.619 0.00 0.00 38.95 5.68
3000 3410 7.948357 TCTAGTACACAAAGTCTAAGCAAAGA 58.052 34.615 0.00 0.00 0.00 2.52
3001 3411 8.589335 TTCTAGTACACAAAGTCTAAGCAAAG 57.411 34.615 0.00 0.00 0.00 2.77
3002 3412 8.823818 GTTTCTAGTACACAAAGTCTAAGCAAA 58.176 33.333 0.00 0.00 0.00 3.68
3003 3413 7.982919 TGTTTCTAGTACACAAAGTCTAAGCAA 59.017 33.333 0.00 0.00 0.00 3.91
3021 3432 8.758633 TTCTTCTCCTTTTCGTATGTTTCTAG 57.241 34.615 0.00 0.00 0.00 2.43
3023 3434 9.372369 CTATTCTTCTCCTTTTCGTATGTTTCT 57.628 33.333 0.00 0.00 0.00 2.52
3030 3441 6.890814 ACTCTCCTATTCTTCTCCTTTTCGTA 59.109 38.462 0.00 0.00 0.00 3.43
3041 3452 5.055812 CCATGCTTCACTCTCCTATTCTTC 58.944 45.833 0.00 0.00 0.00 2.87
3064 3475 1.643832 GGCCGCTCGTTCATGAATC 59.356 57.895 12.12 4.81 0.00 2.52
3102 3513 2.151202 CCCGCCGAAAGCATATGTTAT 58.849 47.619 4.29 0.00 44.04 1.89
3106 3517 2.639286 GCCCGCCGAAAGCATATG 59.361 61.111 0.00 0.00 44.04 1.78
3132 3544 0.305313 TTTTAACGGAGTGCGTGCAC 59.695 50.000 16.91 16.91 45.00 4.57
3177 3590 1.135315 CGCAAGGCTGTATGTGTGC 59.865 57.895 0.00 0.00 0.00 4.57
3243 3673 3.777478 TCGTACCATAGCAACAACTAGC 58.223 45.455 0.00 0.00 0.00 3.42
3255 3685 2.651455 ACTGCTAGTGCTCGTACCATA 58.349 47.619 0.00 0.00 40.48 2.74
3256 3686 1.475403 ACTGCTAGTGCTCGTACCAT 58.525 50.000 0.00 0.00 40.48 3.55
3258 3688 1.268640 GCTACTGCTAGTGCTCGTACC 60.269 57.143 0.00 0.00 40.48 3.34
3303 3736 2.027561 ACGCCCTTGCATAGAAACTACA 60.028 45.455 0.00 0.00 37.32 2.74
3364 3800 1.681538 TAATGCCACACCACACGTTT 58.318 45.000 0.00 0.00 0.00 3.60
3597 4034 1.615392 AGCTGTGATTCTTGGCAAACC 59.385 47.619 0.00 0.00 0.00 3.27
3598 4035 2.555757 AGAGCTGTGATTCTTGGCAAAC 59.444 45.455 0.00 0.00 0.00 2.93
3651 4108 7.649705 GGTTAATTAGCTTAGTCCTTACGGTAC 59.350 40.741 0.00 0.00 0.00 3.34
3652 4109 7.201911 GGGTTAATTAGCTTAGTCCTTACGGTA 60.202 40.741 0.00 0.00 0.00 4.02
3653 4110 6.407412 GGGTTAATTAGCTTAGTCCTTACGGT 60.407 42.308 0.00 0.00 0.00 4.83
3654 4111 5.987953 GGGTTAATTAGCTTAGTCCTTACGG 59.012 44.000 0.00 0.00 0.00 4.02
3655 4112 5.689068 CGGGTTAATTAGCTTAGTCCTTACG 59.311 44.000 0.00 0.00 0.00 3.18
3663 4139 5.753921 CACTTCCTCGGGTTAATTAGCTTAG 59.246 44.000 0.00 0.00 0.00 2.18
3686 4446 1.881324 CATGTGTGCACTCCATTGACA 59.119 47.619 19.41 12.26 0.00 3.58
3687 4447 2.153645 TCATGTGTGCACTCCATTGAC 58.846 47.619 19.41 6.33 0.00 3.18
3688 4448 2.565046 TCATGTGTGCACTCCATTGA 57.435 45.000 19.41 13.90 0.00 2.57
3690 4450 1.475280 GCATCATGTGTGCACTCCATT 59.525 47.619 19.41 3.70 42.08 3.16
3873 4653 7.445121 ACACATCCACACATATATAGGTGAAG 58.555 38.462 28.93 20.50 40.13 3.02
3885 4665 3.565307 ACCAAAAGACACATCCACACAT 58.435 40.909 0.00 0.00 0.00 3.21
3886 4666 3.011566 ACCAAAAGACACATCCACACA 57.988 42.857 0.00 0.00 0.00 3.72
3955 4745 7.954788 AAGAAAACAGTAGAGAAGCAAGTAG 57.045 36.000 0.00 0.00 0.00 2.57
3956 4746 8.732746 AAAAGAAAACAGTAGAGAAGCAAGTA 57.267 30.769 0.00 0.00 0.00 2.24
3957 4747 7.631717 AAAAGAAAACAGTAGAGAAGCAAGT 57.368 32.000 0.00 0.00 0.00 3.16
3984 4780 2.209273 GGTGCATGTTTGGTGGAAAAC 58.791 47.619 0.00 0.00 39.90 2.43
3985 4781 1.202463 CGGTGCATGTTTGGTGGAAAA 60.202 47.619 0.00 0.00 0.00 2.29
3986 4782 0.387202 CGGTGCATGTTTGGTGGAAA 59.613 50.000 0.00 0.00 0.00 3.13
3987 4783 1.459455 CCGGTGCATGTTTGGTGGAA 61.459 55.000 0.00 0.00 0.00 3.53
3988 4784 1.900981 CCGGTGCATGTTTGGTGGA 60.901 57.895 0.00 0.00 0.00 4.02
4022 4818 3.282831 ACGAAATTTTACAGCCAGCAC 57.717 42.857 0.00 0.00 0.00 4.40
4051 4851 9.851686 AATCTATCAAGTGCAACCAAGATTATA 57.148 29.630 0.00 0.00 37.80 0.98
4052 4852 8.757982 AATCTATCAAGTGCAACCAAGATTAT 57.242 30.769 0.00 0.00 37.80 1.28
4057 4857 8.668510 AGTATAATCTATCAAGTGCAACCAAG 57.331 34.615 0.00 0.00 37.80 3.61
4085 4888 5.109500 TGTCATTCACCATTGCCACTATA 57.891 39.130 0.00 0.00 0.00 1.31
4086 4889 3.966979 TGTCATTCACCATTGCCACTAT 58.033 40.909 0.00 0.00 0.00 2.12
4116 4921 3.188786 CGTAGAACCTGCCGCAGC 61.189 66.667 15.36 1.50 40.48 5.25
4165 4970 0.035317 ACACGATGTCCAGCATGTGT 59.965 50.000 0.00 0.00 40.98 3.72
4351 5156 1.408822 GGGACGATGCAGGAAGGAATT 60.409 52.381 0.00 0.00 0.00 2.17
4354 5159 3.309582 GGGACGATGCAGGAAGGA 58.690 61.111 0.00 0.00 0.00 3.36
4369 5174 3.966026 GAAGCACGAGACCGACGGG 62.966 68.421 20.00 2.20 39.50 5.28
5069 5905 3.740128 CTTCGAGCATGGGTCCCGG 62.740 68.421 2.65 0.00 0.00 5.73
5079 5915 1.211969 GTGGTACGAGCTTCGAGCA 59.788 57.895 11.64 8.42 45.56 4.26
5083 5919 0.736325 CAAGGGTGGTACGAGCTTCG 60.736 60.000 7.03 0.00 46.93 3.79
5229 6077 0.927537 GTATATGCACGCACGCAGAA 59.072 50.000 3.23 0.00 46.99 3.02
5246 6094 7.384660 ACGATAAATTATTATTGGAACGGCGTA 59.615 33.333 15.20 0.00 37.26 4.42
5285 6133 5.934625 ACAGCTACTCCATGTAAAGTCAAAG 59.065 40.000 0.00 0.00 0.00 2.77
5306 6157 7.708051 ACTAGTGCTAACTATGTGTCATACAG 58.292 38.462 0.00 0.00 39.20 2.74
5329 6180 9.848710 TCATAATACAACTCTACTACTGCTACT 57.151 33.333 0.00 0.00 0.00 2.57
5368 6219 2.106166 TGACTAGATAGACCGACCTCCC 59.894 54.545 0.00 0.00 0.00 4.30
5374 6225 1.493446 TGCCCTGACTAGATAGACCGA 59.507 52.381 0.00 0.00 0.00 4.69
5375 6226 1.982660 TGCCCTGACTAGATAGACCG 58.017 55.000 0.00 0.00 0.00 4.79
5376 6227 3.556004 GCAATGCCCTGACTAGATAGACC 60.556 52.174 0.00 0.00 0.00 3.85
5377 6228 3.323403 AGCAATGCCCTGACTAGATAGAC 59.677 47.826 0.00 0.00 0.00 2.59
5378 6229 3.576118 GAGCAATGCCCTGACTAGATAGA 59.424 47.826 0.00 0.00 0.00 1.98
5379 6230 3.577848 AGAGCAATGCCCTGACTAGATAG 59.422 47.826 0.00 0.00 0.00 2.08
5380 6231 3.323115 CAGAGCAATGCCCTGACTAGATA 59.677 47.826 11.49 0.00 0.00 1.98
5381 6232 2.104451 CAGAGCAATGCCCTGACTAGAT 59.896 50.000 11.49 0.00 0.00 1.98
5426 6280 7.915397 ACGCACATCAAATTATTAACCATCTTC 59.085 33.333 0.00 0.00 0.00 2.87
5459 6313 2.961526 ACTAGTACCGCAGTTCCATG 57.038 50.000 0.00 0.00 0.00 3.66
5465 6319 3.273434 TCATTCGTACTAGTACCGCAGT 58.727 45.455 24.06 5.66 32.61 4.40
5470 6324 4.321082 GGCCTCATCATTCGTACTAGTACC 60.321 50.000 24.06 9.34 32.61 3.34
5471 6325 4.519730 AGGCCTCATCATTCGTACTAGTAC 59.480 45.833 21.06 21.06 0.00 2.73
5472 6326 4.519350 CAGGCCTCATCATTCGTACTAGTA 59.481 45.833 0.00 0.00 0.00 1.82
5473 6327 3.319405 CAGGCCTCATCATTCGTACTAGT 59.681 47.826 0.00 0.00 0.00 2.57
5474 6328 3.305676 CCAGGCCTCATCATTCGTACTAG 60.306 52.174 0.00 0.00 0.00 2.57
5475 6329 2.628178 CCAGGCCTCATCATTCGTACTA 59.372 50.000 0.00 0.00 0.00 1.82
5494 6354 1.229951 AGCCATGTCTCCTTCCCCA 60.230 57.895 0.00 0.00 0.00 4.96
5640 6509 3.752339 GCGCAGGGAAAGCAAGGG 61.752 66.667 0.30 0.00 0.00 3.95
5641 6510 4.107051 CGCGCAGGGAAAGCAAGG 62.107 66.667 8.75 0.00 46.37 3.61
5642 6511 4.766088 GCGCGCAGGGAAAGCAAG 62.766 66.667 29.10 0.00 46.37 4.01
5887 6793 2.000447 GTAGGTGGTTTGACTCGCATC 59.000 52.381 0.00 0.00 0.00 3.91
5948 6854 3.433740 GGATGGGTTAGAGTTGCCCTTAG 60.434 52.174 0.00 0.00 42.77 2.18
5949 6855 2.508300 GGATGGGTTAGAGTTGCCCTTA 59.492 50.000 0.00 0.00 42.77 2.69
5950 6856 1.285078 GGATGGGTTAGAGTTGCCCTT 59.715 52.381 0.00 0.00 42.77 3.95
5951 6857 0.919710 GGATGGGTTAGAGTTGCCCT 59.080 55.000 0.00 0.00 42.77 5.19
5952 6858 0.919710 AGGATGGGTTAGAGTTGCCC 59.080 55.000 0.00 0.00 42.64 5.36
5953 6859 2.808906 AAGGATGGGTTAGAGTTGCC 57.191 50.000 0.00 0.00 0.00 4.52
5954 6860 7.054751 ACTTATAAAGGATGGGTTAGAGTTGC 58.945 38.462 0.00 0.00 0.00 4.17
5957 6863 9.503369 ACTAACTTATAAAGGATGGGTTAGAGT 57.497 33.333 18.21 4.42 37.36 3.24
5958 6864 9.765795 CACTAACTTATAAAGGATGGGTTAGAG 57.234 37.037 18.21 10.94 37.36 2.43
5959 6865 8.711170 CCACTAACTTATAAAGGATGGGTTAGA 58.289 37.037 18.21 0.00 37.36 2.10
5960 6866 8.711170 TCCACTAACTTATAAAGGATGGGTTAG 58.289 37.037 13.10 13.10 38.49 2.34
5961 6867 8.626917 TCCACTAACTTATAAAGGATGGGTTA 57.373 34.615 0.00 0.00 0.00 2.85
5962 6868 7.184022 ACTCCACTAACTTATAAAGGATGGGTT 59.816 37.037 0.00 0.00 0.00 4.11
5963 6869 6.677076 ACTCCACTAACTTATAAAGGATGGGT 59.323 38.462 0.00 0.00 0.00 4.51
5964 6870 7.138054 ACTCCACTAACTTATAAAGGATGGG 57.862 40.000 0.00 0.00 0.00 4.00
5976 6882 9.080097 AGCGAAGAATATATACTCCACTAACTT 57.920 33.333 0.00 0.00 0.00 2.66
5977 6883 8.638629 AGCGAAGAATATATACTCCACTAACT 57.361 34.615 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.