Multiple sequence alignment - TraesCS5D01G134900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G134900 chr5D 100.000 2474 0 0 1 2474 215257531 215255058 0.000000e+00 4569.0
1 TraesCS5D01G134900 chr5D 98.788 165 2 0 2135 2299 559625769 559625933 6.690000e-76 294.0
2 TraesCS5D01G134900 chr5D 94.595 185 9 1 2135 2318 460392860 460393044 4.030000e-73 285.0
3 TraesCS5D01G134900 chr5D 84.348 115 12 4 434 544 220683178 220683290 9.360000e-20 108.0
4 TraesCS5D01G134900 chr5B 94.436 1384 60 11 755 2136 230782650 230781282 0.000000e+00 2113.0
5 TraesCS5D01G134900 chr5B 91.841 478 32 6 1 474 230784646 230784172 0.000000e+00 660.0
6 TraesCS5D01G134900 chr5B 83.571 140 11 4 465 594 230783937 230783800 1.200000e-23 121.0
7 TraesCS5D01G134900 chr5B 100.000 29 0 0 730 758 230783546 230783518 1.000000e-03 54.7
8 TraesCS5D01G134900 chr5A 92.804 1348 40 12 756 2085 283111824 283110516 0.000000e+00 1899.0
9 TraesCS5D01G134900 chr5A 89.044 502 39 9 1 486 283115044 283114543 2.100000e-170 608.0
10 TraesCS5D01G134900 chr5A 88.489 278 25 7 486 761 283112127 283111855 1.830000e-86 329.0
11 TraesCS5D01G134900 chr5A 93.333 180 7 2 2298 2473 283110479 283110301 6.790000e-66 261.0
12 TraesCS5D01G134900 chr5A 91.111 45 4 0 2341 2385 362168072 362168028 7.390000e-06 62.1
13 TraesCS5D01G134900 chr5A 89.583 48 3 2 2338 2384 645274842 645274888 2.660000e-05 60.2
14 TraesCS5D01G134900 chr6B 83.663 404 35 15 20 393 590564508 590564106 3.910000e-93 351.0
15 TraesCS5D01G134900 chr3D 83.375 403 38 18 16 393 549058927 549059325 1.820000e-91 346.0
16 TraesCS5D01G134900 chr3D 96.450 169 5 1 2132 2299 550509428 550509596 6.740000e-71 278.0
17 TraesCS5D01G134900 chr6A 85.970 335 30 8 20 337 540607156 540606822 2.360000e-90 342.0
18 TraesCS5D01G134900 chr3B 82.275 378 48 15 20 382 426003914 426004287 2.390000e-80 309.0
19 TraesCS5D01G134900 chr3B 82.972 323 29 18 92 393 169656576 169656893 4.060000e-68 268.0
20 TraesCS5D01G134900 chr3B 83.636 110 14 2 459 565 457574326 457574218 1.570000e-17 100.0
21 TraesCS5D01G134900 chr1D 97.619 168 4 0 2134 2301 84712056 84712223 3.110000e-74 289.0
22 TraesCS5D01G134900 chr1D 98.182 165 3 0 2135 2299 362598056 362597892 3.110000e-74 289.0
23 TraesCS5D01G134900 chr1D 94.286 175 10 0 2128 2302 466603283 466603457 4.060000e-68 268.0
24 TraesCS5D01G134900 chr1D 81.053 95 16 2 1381 1474 218409923 218409830 9.490000e-10 75.0
25 TraesCS5D01G134900 chr1D 91.111 45 4 0 2340 2384 476559197 476559153 7.390000e-06 62.1
26 TraesCS5D01G134900 chr4A 83.186 339 26 19 21 337 724482040 724482369 5.210000e-72 281.0
27 TraesCS5D01G134900 chr4A 79.648 398 52 16 23 393 158597305 158596910 2.440000e-65 259.0
28 TraesCS5D01G134900 chr4A 85.027 187 23 4 522 704 244230005 244230190 4.200000e-43 185.0
29 TraesCS5D01G134900 chr4A 85.027 187 23 4 522 704 292272000 292272185 4.200000e-43 185.0
30 TraesCS5D01G134900 chr4A 93.750 80 3 2 12 91 29496109 29496186 4.320000e-23 119.0
31 TraesCS5D01G134900 chr4A 86.667 90 7 5 459 544 450791646 450791558 7.280000e-16 95.3
32 TraesCS5D01G134900 chr6D 95.930 172 7 0 2128 2299 218407381 218407210 1.870000e-71 279.0
33 TraesCS5D01G134900 chr6D 90.323 155 15 0 553 707 48458124 48457970 1.160000e-48 204.0
34 TraesCS5D01G134900 chr6D 87.640 89 7 4 459 544 392273214 392273127 1.570000e-17 100.0
35 TraesCS5D01G134900 chr4D 94.944 178 9 0 2129 2306 243613266 243613443 1.870000e-71 279.0
36 TraesCS5D01G134900 chr4D 87.425 167 21 0 541 707 471702482 471702648 2.510000e-45 193.0
37 TraesCS5D01G134900 chr4D 87.778 90 6 5 459 544 119822888 119822800 1.570000e-17 100.0
38 TraesCS5D01G134900 chr4D 90.909 44 4 0 2341 2384 34072293 34072336 2.660000e-05 60.2
39 TraesCS5D01G134900 chr2D 95.376 173 8 0 2131 2303 155439833 155440005 2.420000e-70 276.0
40 TraesCS5D01G134900 chr2A 91.275 149 13 0 546 694 504326779 504326631 1.160000e-48 204.0
41 TraesCS5D01G134900 chrUn 88.554 166 18 1 539 704 100087308 100087144 1.500000e-47 200.0
42 TraesCS5D01G134900 chr7B 87.500 168 21 0 540 707 11441307 11441140 6.980000e-46 195.0
43 TraesCS5D01G134900 chr7B 84.158 101 12 2 447 544 153426764 153426863 7.280000e-16 95.3
44 TraesCS5D01G134900 chr7B 91.837 49 2 2 2341 2388 143334856 143334903 1.590000e-07 67.6
45 TraesCS5D01G134900 chr4B 87.952 166 19 1 540 704 664400395 664400230 6.980000e-46 195.0
46 TraesCS5D01G134900 chr3A 84.545 110 13 2 459 565 475281403 475281295 3.360000e-19 106.0
47 TraesCS5D01G134900 chr1A 82.105 95 15 2 1381 1474 280603692 280603599 2.040000e-11 80.5
48 TraesCS5D01G134900 chr2B 95.652 46 2 0 2340 2385 608364752 608364797 9.490000e-10 75.0
49 TraesCS5D01G134900 chr1B 81.053 95 16 2 1381 1474 312249256 312249163 9.490000e-10 75.0
50 TraesCS5D01G134900 chr1B 86.792 53 5 2 2341 2392 359617537 359617588 9.560000e-05 58.4
51 TraesCS5D01G134900 chr7A 93.878 49 1 2 2341 2388 180659575 180659622 3.410000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G134900 chr5D 215255058 215257531 2473 True 4569.000 4569 100.0000 1 2474 1 chr5D.!!$R1 2473
1 TraesCS5D01G134900 chr5B 230781282 230784646 3364 True 737.175 2113 92.4620 1 2136 4 chr5B.!!$R1 2135
2 TraesCS5D01G134900 chr5A 283110301 283115044 4743 True 774.250 1899 90.9175 1 2473 4 chr5A.!!$R2 2472

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
385 398 0.110486 ACACCCGAGAGCCAAATGTT 59.89 50.0 0.0 0.0 0.0 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2281 6045 0.115745 ACTACTCCCTCCGTTCCCAA 59.884 55.0 0.0 0.0 0.0 4.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 139 3.354397 CAACAAACTTGAGCTGTCGTTC 58.646 45.455 0.00 0.00 0.00 3.95
144 156 5.175491 TGTCGTTCCTGTCGTACAAAAATAC 59.825 40.000 0.00 0.00 0.00 1.89
148 160 6.803320 CGTTCCTGTCGTACAAAAATACTCTA 59.197 38.462 0.00 0.00 0.00 2.43
205 217 7.364232 GCCTAGGACATATAGCATGAACAGTAT 60.364 40.741 14.75 0.00 0.00 2.12
274 286 3.040147 AGTCATTTCTCCGCGAAAGAA 57.960 42.857 8.23 13.86 44.29 2.52
309 321 7.409343 GCAACAATAAATCTACTTTGTTCGCAC 60.409 37.037 0.00 0.00 39.55 5.34
385 398 0.110486 ACACCCGAGAGCCAAATGTT 59.890 50.000 0.00 0.00 0.00 2.71
416 430 8.768397 TCCTGTATATACTCACTTTTCCACATT 58.232 33.333 13.89 0.00 0.00 2.71
423 437 4.273480 ACTCACTTTTCCACATTTCTCACG 59.727 41.667 0.00 0.00 0.00 4.35
611 3300 4.394920 GGACTACATTCGGAGCAAAATGAA 59.605 41.667 2.36 0.00 36.57 2.57
633 3322 8.429493 TGAATGAATCTGCACTCTAAACTATG 57.571 34.615 0.00 0.00 0.00 2.23
702 3437 9.628500 AGACTTACATTTAGAAACAAAAGGAGT 57.372 29.630 0.00 0.00 0.00 3.85
770 4501 7.040494 GGGAGTACCACTAGTTCTAAATTCAC 58.960 42.308 0.00 0.00 39.85 3.18
799 4530 6.942976 AGAGGGTTAACGATGTATTCAGAAA 58.057 36.000 0.00 0.00 0.00 2.52
816 4547 3.386402 CAGAAAACAAGTAAGGGCCCAAA 59.614 43.478 27.56 8.59 0.00 3.28
843 4574 3.599037 AGGAAACCAACCTCCTCCT 57.401 52.632 0.00 0.00 37.53 3.69
844 4575 1.363246 AGGAAACCAACCTCCTCCTC 58.637 55.000 0.00 0.00 37.53 3.71
849 4580 1.997874 CCAACCTCCTCCTCCCCTG 60.998 68.421 0.00 0.00 0.00 4.45
914 4645 2.902846 CGTTCACGCCCAACCCAA 60.903 61.111 0.00 0.00 0.00 4.12
968 4699 2.879462 CGCAACGTAGCCGGAGAC 60.879 66.667 5.05 0.00 38.78 3.36
1608 5339 4.107311 TGGGAAGGGGATGAAAAGTAAAGT 59.893 41.667 0.00 0.00 0.00 2.66
1628 5359 1.895798 TGGTGAGGTGAGATGAGTGAC 59.104 52.381 0.00 0.00 0.00 3.67
1633 5364 0.457851 GGTGAGATGAGTGACCGAGG 59.542 60.000 0.00 0.00 0.00 4.63
1638 5369 4.279671 GTGAGATGAGTGACCGAGGATTAT 59.720 45.833 0.00 0.00 0.00 1.28
1737 5468 3.308595 CAGTTCGTCTGCTGTGTTTAACA 59.691 43.478 0.00 0.00 37.36 2.41
1771 5520 3.466836 TCTATGCGAAATTAGTGCCTGG 58.533 45.455 0.00 0.00 0.00 4.45
1849 5598 3.015327 GCTTGATGCAGAGAATCAGGTT 58.985 45.455 0.00 0.00 42.31 3.50
1946 5709 2.680339 GGCTTGTGCTTGGTCTATTCTC 59.320 50.000 0.00 0.00 39.59 2.87
1949 5712 3.232213 TGTGCTTGGTCTATTCTCGTC 57.768 47.619 0.00 0.00 0.00 4.20
1951 5714 3.006430 TGTGCTTGGTCTATTCTCGTCAA 59.994 43.478 0.00 0.00 0.00 3.18
1952 5715 4.184629 GTGCTTGGTCTATTCTCGTCAAT 58.815 43.478 0.00 0.00 0.00 2.57
1953 5716 5.105513 TGTGCTTGGTCTATTCTCGTCAATA 60.106 40.000 0.00 0.00 0.00 1.90
1954 5717 5.810587 GTGCTTGGTCTATTCTCGTCAATAA 59.189 40.000 0.00 0.00 0.00 1.40
1955 5718 5.810587 TGCTTGGTCTATTCTCGTCAATAAC 59.189 40.000 0.00 0.00 0.00 1.89
1956 5719 6.043411 GCTTGGTCTATTCTCGTCAATAACT 58.957 40.000 0.00 0.00 0.00 2.24
1957 5720 6.535508 GCTTGGTCTATTCTCGTCAATAACTT 59.464 38.462 0.00 0.00 0.00 2.66
1958 5721 7.464710 GCTTGGTCTATTCTCGTCAATAACTTG 60.465 40.741 0.00 0.00 0.00 3.16
1959 5722 6.931838 TGGTCTATTCTCGTCAATAACTTGT 58.068 36.000 0.00 0.00 33.87 3.16
1960 5723 7.383687 TGGTCTATTCTCGTCAATAACTTGTT 58.616 34.615 0.00 0.00 33.87 2.83
1961 5724 7.330946 TGGTCTATTCTCGTCAATAACTTGTTG 59.669 37.037 0.00 0.00 33.87 3.33
1962 5725 7.544566 GGTCTATTCTCGTCAATAACTTGTTGA 59.455 37.037 0.00 0.00 33.87 3.18
1963 5726 9.088512 GTCTATTCTCGTCAATAACTTGTTGAT 57.911 33.333 4.47 0.00 37.84 2.57
1988 5751 4.898829 TTTGGATCATAGCATGTTTCCG 57.101 40.909 0.00 0.00 36.84 4.30
2019 5782 2.559698 TGGTGGAGAAAATTCAGCGA 57.440 45.000 0.00 0.00 0.00 4.93
2037 5801 7.529880 TCAGCGATATAATGTTATCAGCATG 57.470 36.000 0.00 0.00 34.00 4.06
2038 5802 6.036408 TCAGCGATATAATGTTATCAGCATGC 59.964 38.462 10.51 10.51 34.00 4.06
2039 5803 6.036844 CAGCGATATAATGTTATCAGCATGCT 59.963 38.462 16.30 16.30 34.00 3.79
2074 5838 5.100259 CGTTGTAGTTCTATGTCGTGGAAT 58.900 41.667 0.00 0.00 29.51 3.01
2084 5848 7.624360 TCTATGTCGTGGAATTTTTATTGCT 57.376 32.000 0.00 0.00 0.00 3.91
2089 5853 6.858993 TGTCGTGGAATTTTTATTGCTGTTAC 59.141 34.615 0.00 0.00 0.00 2.50
2114 5878 4.219725 ACATTTGTGCTGGTTATGGGTTAC 59.780 41.667 0.00 0.00 0.00 2.50
2115 5879 3.510531 TTGTGCTGGTTATGGGTTACA 57.489 42.857 0.00 0.00 0.00 2.41
2119 5883 3.570550 GTGCTGGTTATGGGTTACAACAA 59.429 43.478 0.00 0.00 0.00 2.83
2120 5884 4.038162 GTGCTGGTTATGGGTTACAACAAA 59.962 41.667 0.00 0.00 0.00 2.83
2125 5889 5.011125 TGGTTATGGGTTACAACAAATGGTG 59.989 40.000 0.00 0.00 39.04 4.17
2126 5890 5.474825 GTTATGGGTTACAACAAATGGTGG 58.525 41.667 3.16 0.00 36.97 4.61
2131 5895 6.312529 TGGGTTACAACAAATGGTGGTAATA 58.687 36.000 3.16 0.00 45.33 0.98
2132 5896 6.781014 TGGGTTACAACAAATGGTGGTAATAA 59.219 34.615 3.16 0.00 45.33 1.40
2133 5897 7.455008 TGGGTTACAACAAATGGTGGTAATAAT 59.545 33.333 3.16 0.00 45.33 1.28
2134 5898 8.315482 GGGTTACAACAAATGGTGGTAATAATT 58.685 33.333 3.16 0.00 45.33 1.40
2139 5903 8.745590 ACAACAAATGGTGGTAATAATTACTCC 58.254 33.333 3.16 0.00 36.97 3.85
2140 5904 7.891498 ACAAATGGTGGTAATAATTACTCCC 57.109 36.000 0.00 0.00 36.39 4.30
2141 5905 7.648770 ACAAATGGTGGTAATAATTACTCCCT 58.351 34.615 0.00 0.00 36.39 4.20
2142 5906 7.778382 ACAAATGGTGGTAATAATTACTCCCTC 59.222 37.037 0.00 0.00 36.39 4.30
2143 5907 5.899631 TGGTGGTAATAATTACTCCCTCC 57.100 43.478 8.98 8.98 36.39 4.30
2144 5908 4.345837 TGGTGGTAATAATTACTCCCTCCG 59.654 45.833 10.36 0.00 36.39 4.63
2145 5909 4.346127 GGTGGTAATAATTACTCCCTCCGT 59.654 45.833 0.00 0.00 36.39 4.69
2146 5910 5.163269 GGTGGTAATAATTACTCCCTCCGTT 60.163 44.000 0.00 0.00 36.39 4.44
2147 5911 5.987953 GTGGTAATAATTACTCCCTCCGTTC 59.012 44.000 0.00 0.00 36.39 3.95
2148 5912 5.070847 TGGTAATAATTACTCCCTCCGTTCC 59.929 44.000 0.00 0.00 36.39 3.62
2149 5913 5.306419 GGTAATAATTACTCCCTCCGTTCCT 59.694 44.000 0.00 0.00 36.39 3.36
2150 5914 6.494835 GGTAATAATTACTCCCTCCGTTCCTA 59.505 42.308 0.00 0.00 36.39 2.94
2151 5915 7.015584 GGTAATAATTACTCCCTCCGTTCCTAA 59.984 40.741 0.00 0.00 36.39 2.69
2152 5916 7.441903 AATAATTACTCCCTCCGTTCCTAAA 57.558 36.000 0.00 0.00 0.00 1.85
2153 5917 5.970501 AATTACTCCCTCCGTTCCTAAAT 57.029 39.130 0.00 0.00 0.00 1.40
2154 5918 8.731591 ATAATTACTCCCTCCGTTCCTAAATA 57.268 34.615 0.00 0.00 0.00 1.40
2155 5919 7.628501 AATTACTCCCTCCGTTCCTAAATAT 57.371 36.000 0.00 0.00 0.00 1.28
2156 5920 8.731591 AATTACTCCCTCCGTTCCTAAATATA 57.268 34.615 0.00 0.00 0.00 0.86
2157 5921 8.731591 ATTACTCCCTCCGTTCCTAAATATAA 57.268 34.615 0.00 0.00 0.00 0.98
2158 5922 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2159 5923 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2160 5924 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2161 5925 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2162 5926 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2163 5927 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2164 5928 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
2165 5929 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
2180 5944 9.893305 ATAAGTCTTTTTAGACATTTCAAACGG 57.107 29.630 7.92 0.00 41.02 4.44
2181 5945 7.562454 AGTCTTTTTAGACATTTCAAACGGA 57.438 32.000 7.92 0.00 41.02 4.69
2182 5946 7.415229 AGTCTTTTTAGACATTTCAAACGGAC 58.585 34.615 7.92 0.00 41.02 4.79
2183 5947 7.282450 AGTCTTTTTAGACATTTCAAACGGACT 59.718 33.333 7.92 0.00 41.02 3.85
2184 5948 8.553696 GTCTTTTTAGACATTTCAAACGGACTA 58.446 33.333 0.00 0.00 38.59 2.59
2185 5949 8.553696 TCTTTTTAGACATTTCAAACGGACTAC 58.446 33.333 0.00 0.00 0.00 2.73
2186 5950 7.789273 TTTTAGACATTTCAAACGGACTACA 57.211 32.000 0.00 0.00 0.00 2.74
2187 5951 7.789273 TTTAGACATTTCAAACGGACTACAA 57.211 32.000 0.00 0.00 0.00 2.41
2188 5952 5.668558 AGACATTTCAAACGGACTACAAC 57.331 39.130 0.00 0.00 0.00 3.32
2189 5953 5.120399 AGACATTTCAAACGGACTACAACA 58.880 37.500 0.00 0.00 0.00 3.33
2190 5954 5.763204 AGACATTTCAAACGGACTACAACAT 59.237 36.000 0.00 0.00 0.00 2.71
2191 5955 6.932400 AGACATTTCAAACGGACTACAACATA 59.068 34.615 0.00 0.00 0.00 2.29
2192 5956 6.894828 ACATTTCAAACGGACTACAACATAC 58.105 36.000 0.00 0.00 0.00 2.39
2193 5957 5.579384 TTTCAAACGGACTACAACATACG 57.421 39.130 0.00 0.00 0.00 3.06
2194 5958 3.577667 TCAAACGGACTACAACATACGG 58.422 45.455 0.00 0.00 0.00 4.02
2195 5959 3.255395 TCAAACGGACTACAACATACGGA 59.745 43.478 0.00 0.00 0.00 4.69
2196 5960 4.082081 TCAAACGGACTACAACATACGGAT 60.082 41.667 0.00 0.00 0.00 4.18
2197 5961 3.431922 ACGGACTACAACATACGGATG 57.568 47.619 5.94 5.94 39.16 3.51
2199 5963 3.947196 ACGGACTACAACATACGGATGTA 59.053 43.478 15.10 0.00 45.93 2.29
2200 5964 4.581824 ACGGACTACAACATACGGATGTAT 59.418 41.667 15.10 8.21 45.93 2.29
2222 5986 9.750125 TGTATGTAGACATATTTTAGAGTGCAG 57.250 33.333 5.69 0.00 40.53 4.41
2223 5987 9.967346 GTATGTAGACATATTTTAGAGTGCAGA 57.033 33.333 5.69 0.00 40.53 4.26
2226 5990 9.534565 TGTAGACATATTTTAGAGTGCAGATTC 57.465 33.333 0.00 0.00 0.00 2.52
2227 5991 9.534565 GTAGACATATTTTAGAGTGCAGATTCA 57.465 33.333 0.00 0.00 0.00 2.57
2228 5992 8.430801 AGACATATTTTAGAGTGCAGATTCAC 57.569 34.615 0.00 0.00 37.24 3.18
2237 6001 4.170292 AGTGCAGATTCACTCATTTTGC 57.830 40.909 0.00 0.00 43.28 3.68
2238 6002 3.825014 AGTGCAGATTCACTCATTTTGCT 59.175 39.130 0.00 0.00 43.28 3.91
2239 6003 4.082895 AGTGCAGATTCACTCATTTTGCTC 60.083 41.667 0.00 0.00 43.28 4.26
2240 6004 3.192001 TGCAGATTCACTCATTTTGCTCC 59.808 43.478 0.00 0.00 0.00 4.70
2241 6005 3.730061 GCAGATTCACTCATTTTGCTCCG 60.730 47.826 0.00 0.00 0.00 4.63
2242 6006 3.438087 CAGATTCACTCATTTTGCTCCGT 59.562 43.478 0.00 0.00 0.00 4.69
2243 6007 4.631377 CAGATTCACTCATTTTGCTCCGTA 59.369 41.667 0.00 0.00 0.00 4.02
2244 6008 5.295292 CAGATTCACTCATTTTGCTCCGTAT 59.705 40.000 0.00 0.00 0.00 3.06
2245 6009 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
2246 6010 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2247 6011 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2248 6012 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
2249 6013 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
2250 6014 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
2251 6015 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
2252 6016 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
2253 6017 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
2254 6018 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
2255 6019 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
2256 6020 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
2257 6021 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
2258 6022 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
2259 6023 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
2260 6024 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
2261 6025 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
2262 6026 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
2263 6027 7.604549 TCCGTATGTAGTCACTTGTTGAAATA 58.395 34.615 0.00 0.00 35.39 1.40
2264 6028 8.255206 TCCGTATGTAGTCACTTGTTGAAATAT 58.745 33.333 0.00 0.00 35.39 1.28
2265 6029 8.540492 CCGTATGTAGTCACTTGTTGAAATATC 58.460 37.037 0.00 0.00 35.39 1.63
2266 6030 9.302345 CGTATGTAGTCACTTGTTGAAATATCT 57.698 33.333 0.00 0.00 35.39 1.98
2290 6054 9.169592 TCTAAAAAGACTTATATTTGGGAACGG 57.830 33.333 0.00 0.00 0.00 4.44
2291 6055 9.169592 CTAAAAAGACTTATATTTGGGAACGGA 57.830 33.333 0.00 0.00 0.00 4.69
2292 6056 7.625828 AAAAGACTTATATTTGGGAACGGAG 57.374 36.000 0.00 0.00 0.00 4.63
2293 6057 5.291905 AGACTTATATTTGGGAACGGAGG 57.708 43.478 0.00 0.00 0.00 4.30
2294 6058 4.102681 AGACTTATATTTGGGAACGGAGGG 59.897 45.833 0.00 0.00 0.00 4.30
2295 6059 4.042174 ACTTATATTTGGGAACGGAGGGA 58.958 43.478 0.00 0.00 0.00 4.20
2296 6060 4.102681 ACTTATATTTGGGAACGGAGGGAG 59.897 45.833 0.00 0.00 0.00 4.30
2317 6081 1.264295 AGTTGGTACTTCCTCCGTCC 58.736 55.000 0.00 0.00 37.07 4.79
2346 6114 4.569943 ACTTGTCGCTCAAAGTGATACAT 58.430 39.130 0.00 0.00 37.06 2.29
2357 6125 2.540515 AGTGATACATCCGTTTGAGCG 58.459 47.619 0.00 0.00 0.00 5.03
2401 6169 9.232473 GAGGGAGTATTTTGTTTCTGTTTCTAT 57.768 33.333 0.00 0.00 0.00 1.98
2435 6203 4.608948 AATTCACTCTCACGGAGAAACT 57.391 40.909 5.33 0.00 44.45 2.66
2473 6241 6.720012 AGTGTTGTTTTTCAAACAATGGTC 57.280 33.333 15.80 5.97 41.51 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 5.432645 TGGGAAAAGGTTTTGGAACATTTC 58.567 37.500 2.94 6.76 45.76 2.17
92 93 4.584874 AGTTTGTTGGGAAAAGGTTTTGG 58.415 39.130 0.00 0.00 0.00 3.28
127 139 9.577110 TGTTATAGAGTATTTTTGTACGACAGG 57.423 33.333 0.00 0.00 0.00 4.00
356 369 4.080807 TGGCTCTCGGGTGTAATTAAATCA 60.081 41.667 0.00 0.00 0.00 2.57
358 371 4.497291 TGGCTCTCGGGTGTAATTAAAT 57.503 40.909 0.00 0.00 0.00 1.40
385 398 4.719026 AGTGAGTATATACAGGACGGGA 57.281 45.455 15.18 0.00 0.00 5.14
494 3173 8.181487 TGTTCGCTAATTTCAGTCTTGTATAC 57.819 34.615 0.00 0.00 0.00 1.47
500 3179 6.183360 TGTGTTTGTTCGCTAATTTCAGTCTT 60.183 34.615 0.00 0.00 0.00 3.01
581 3270 3.997021 GCTCCGAATGTAGTCCATATTGG 59.003 47.826 0.00 0.00 39.43 3.16
594 3283 6.198403 CAGATTCATTCATTTTGCTCCGAATG 59.802 38.462 0.00 0.00 43.87 2.67
598 3287 3.795101 GCAGATTCATTCATTTTGCTCCG 59.205 43.478 0.00 0.00 0.00 4.63
599 3288 4.565564 GTGCAGATTCATTCATTTTGCTCC 59.434 41.667 0.00 0.00 0.00 4.70
600 3289 5.408356 AGTGCAGATTCATTCATTTTGCTC 58.592 37.500 0.00 0.00 0.00 4.26
611 3300 7.790027 AGACATAGTTTAGAGTGCAGATTCAT 58.210 34.615 0.00 0.00 0.00 2.57
683 3418 8.244113 GGGATGTACTCCTTTTGTTTCTAAATG 58.756 37.037 10.11 0.00 44.28 2.32
695 3430 7.348274 TCTGATCTAAATGGGATGTACTCCTTT 59.652 37.037 10.11 7.25 44.28 3.11
702 3437 8.267620 AGATGTTCTGATCTAAATGGGATGTA 57.732 34.615 0.00 0.00 30.50 2.29
770 4501 1.749634 ACATCGTTAACCCTCTCTCCG 59.250 52.381 0.00 0.00 0.00 4.63
799 4530 1.623311 GCATTTGGGCCCTTACTTGTT 59.377 47.619 25.70 0.00 0.00 2.83
816 4547 1.339929 GGTTGGTTTCCTCGTTTGCAT 59.660 47.619 0.00 0.00 0.00 3.96
843 4574 1.675219 GCGGAGTTGTTACAGGGGA 59.325 57.895 0.00 0.00 0.00 4.81
844 4575 1.376812 GGCGGAGTTGTTACAGGGG 60.377 63.158 0.00 0.00 0.00 4.79
849 4580 4.143363 GCGCGGCGGAGTTGTTAC 62.143 66.667 25.03 0.00 0.00 2.50
914 4645 3.668142 CGGGGAAATGGGGTGGGT 61.668 66.667 0.00 0.00 0.00 4.51
968 4699 2.106332 GATCACCAGTACGGCGGG 59.894 66.667 13.24 4.90 39.03 6.13
1533 5264 2.617021 GCAACGGATGGAACTAAAGGGA 60.617 50.000 0.00 0.00 0.00 4.20
1608 5339 1.895798 GTCACTCATCTCACCTCACCA 59.104 52.381 0.00 0.00 0.00 4.17
1628 5359 6.698329 TGTTATTGTCGTGTTATAATCCTCGG 59.302 38.462 0.00 0.00 0.00 4.63
1633 5364 7.846107 CAGCACTGTTATTGTCGTGTTATAATC 59.154 37.037 0.00 0.00 0.00 1.75
1638 5369 4.373527 ACAGCACTGTTATTGTCGTGTTA 58.626 39.130 0.00 0.00 41.83 2.41
1754 5485 0.322456 AGCCAGGCACTAATTTCGCA 60.322 50.000 15.80 0.00 36.02 5.10
1771 5520 3.357897 GAACAGCATTTCGCATAGAAGC 58.642 45.455 0.00 0.00 46.13 3.86
1849 5598 7.716123 ACCAAAGAATTTCATTTTGCATCTTCA 59.284 29.630 0.00 0.00 35.03 3.02
1936 5685 7.544566 TCAACAAGTTATTGACGAGAATAGACC 59.455 37.037 0.00 0.00 38.83 3.85
1946 5709 9.619316 TCCAAATTTATCAACAAGTTATTGACG 57.381 29.630 0.00 0.00 38.84 4.35
1953 5716 9.807649 GCTATGATCCAAATTTATCAACAAGTT 57.192 29.630 7.54 0.00 35.82 2.66
1954 5717 8.970020 TGCTATGATCCAAATTTATCAACAAGT 58.030 29.630 7.54 0.00 35.82 3.16
1955 5718 9.976511 ATGCTATGATCCAAATTTATCAACAAG 57.023 29.630 7.54 7.11 35.82 3.16
1956 5719 9.752961 CATGCTATGATCCAAATTTATCAACAA 57.247 29.630 7.54 0.00 35.82 2.83
1957 5720 8.916062 ACATGCTATGATCCAAATTTATCAACA 58.084 29.630 7.54 7.19 35.82 3.33
1958 5721 9.754382 AACATGCTATGATCCAAATTTATCAAC 57.246 29.630 7.54 2.83 35.82 3.18
1960 5723 9.970395 GAAACATGCTATGATCCAAATTTATCA 57.030 29.630 6.18 6.18 36.60 2.15
1961 5724 9.415544 GGAAACATGCTATGATCCAAATTTATC 57.584 33.333 0.00 0.00 38.64 1.75
1962 5725 8.084073 CGGAAACATGCTATGATCCAAATTTAT 58.916 33.333 16.91 0.00 38.68 1.40
1963 5726 7.068103 ACGGAAACATGCTATGATCCAAATTTA 59.932 33.333 16.91 0.00 38.68 1.40
1964 5727 6.127366 ACGGAAACATGCTATGATCCAAATTT 60.127 34.615 16.91 0.00 38.68 1.82
1965 5728 5.360714 ACGGAAACATGCTATGATCCAAATT 59.639 36.000 16.91 0.00 38.68 1.82
1988 5751 7.631717 ATTTTCTCCACCATTAGCTAGAAAC 57.368 36.000 4.02 0.00 33.88 2.78
2037 5801 5.302357 ACTACAACGTAACCAGTACTAGC 57.698 43.478 0.00 0.00 0.00 3.42
2038 5802 7.138692 AGAACTACAACGTAACCAGTACTAG 57.861 40.000 0.00 0.00 0.00 2.57
2039 5803 8.668353 CATAGAACTACAACGTAACCAGTACTA 58.332 37.037 0.00 0.00 0.00 1.82
2074 5838 8.119226 GCACAAATGTTGTAACAGCAATAAAAA 58.881 29.630 3.66 0.00 43.23 1.94
2084 5848 4.727507 AACCAGCACAAATGTTGTAACA 57.272 36.364 0.00 0.00 43.23 2.41
2089 5853 3.006752 ACCCATAACCAGCACAAATGTTG 59.993 43.478 0.00 0.00 36.83 3.33
2114 5878 8.194769 GGGAGTAATTATTACCACCATTTGTTG 58.805 37.037 21.15 0.00 36.81 3.33
2115 5879 8.119891 AGGGAGTAATTATTACCACCATTTGTT 58.880 33.333 20.28 3.99 36.81 2.83
2119 5883 6.465321 CGGAGGGAGTAATTATTACCACCATT 60.465 42.308 20.82 12.76 36.81 3.16
2120 5884 5.012768 CGGAGGGAGTAATTATTACCACCAT 59.987 44.000 20.82 16.75 36.81 3.55
2125 5889 5.306419 AGGAACGGAGGGAGTAATTATTACC 59.694 44.000 11.07 0.82 36.81 2.85
2126 5890 6.416631 AGGAACGGAGGGAGTAATTATTAC 57.583 41.667 6.99 6.99 36.38 1.89
2131 5895 5.970501 ATTTAGGAACGGAGGGAGTAATT 57.029 39.130 0.00 0.00 0.00 1.40
2132 5896 8.731591 TTATATTTAGGAACGGAGGGAGTAAT 57.268 34.615 0.00 0.00 0.00 1.89
2133 5897 7.786464 ACTTATATTTAGGAACGGAGGGAGTAA 59.214 37.037 0.00 0.00 0.00 2.24
2134 5898 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
2135 5899 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
2136 5900 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
2137 5901 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2138 5902 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2139 5903 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
2154 5918 9.893305 CCGTTTGAAATGTCTAAAAAGACTTAT 57.107 29.630 7.04 0.00 39.41 1.73
2155 5919 9.111613 TCCGTTTGAAATGTCTAAAAAGACTTA 57.888 29.630 7.04 0.00 39.41 2.24
2156 5920 7.913821 GTCCGTTTGAAATGTCTAAAAAGACTT 59.086 33.333 7.04 0.00 39.41 3.01
2157 5921 7.282450 AGTCCGTTTGAAATGTCTAAAAAGACT 59.718 33.333 7.04 0.00 39.41 3.24
2158 5922 7.415229 AGTCCGTTTGAAATGTCTAAAAAGAC 58.585 34.615 0.00 0.00 39.15 3.01
2159 5923 7.562454 AGTCCGTTTGAAATGTCTAAAAAGA 57.438 32.000 0.00 0.00 0.00 2.52
2160 5924 8.339714 TGTAGTCCGTTTGAAATGTCTAAAAAG 58.660 33.333 0.00 0.00 0.00 2.27
2161 5925 8.211116 TGTAGTCCGTTTGAAATGTCTAAAAA 57.789 30.769 0.00 0.00 0.00 1.94
2162 5926 7.789273 TGTAGTCCGTTTGAAATGTCTAAAA 57.211 32.000 0.00 0.00 0.00 1.52
2163 5927 7.280428 TGTTGTAGTCCGTTTGAAATGTCTAAA 59.720 33.333 0.00 0.00 0.00 1.85
2164 5928 6.762187 TGTTGTAGTCCGTTTGAAATGTCTAA 59.238 34.615 0.00 0.00 0.00 2.10
2165 5929 6.282167 TGTTGTAGTCCGTTTGAAATGTCTA 58.718 36.000 0.00 0.00 0.00 2.59
2166 5930 5.120399 TGTTGTAGTCCGTTTGAAATGTCT 58.880 37.500 0.00 0.00 0.00 3.41
2167 5931 5.412526 TGTTGTAGTCCGTTTGAAATGTC 57.587 39.130 0.00 0.00 0.00 3.06
2168 5932 6.347079 CGTATGTTGTAGTCCGTTTGAAATGT 60.347 38.462 0.00 0.00 0.00 2.71
2169 5933 6.013085 CGTATGTTGTAGTCCGTTTGAAATG 58.987 40.000 0.00 0.00 0.00 2.32
2170 5934 5.121142 CCGTATGTTGTAGTCCGTTTGAAAT 59.879 40.000 0.00 0.00 0.00 2.17
2171 5935 4.448395 CCGTATGTTGTAGTCCGTTTGAAA 59.552 41.667 0.00 0.00 0.00 2.69
2172 5936 3.989167 CCGTATGTTGTAGTCCGTTTGAA 59.011 43.478 0.00 0.00 0.00 2.69
2173 5937 3.255395 TCCGTATGTTGTAGTCCGTTTGA 59.745 43.478 0.00 0.00 0.00 2.69
2174 5938 3.577667 TCCGTATGTTGTAGTCCGTTTG 58.422 45.455 0.00 0.00 0.00 2.93
2175 5939 3.940209 TCCGTATGTTGTAGTCCGTTT 57.060 42.857 0.00 0.00 0.00 3.60
2176 5940 3.194116 ACATCCGTATGTTGTAGTCCGTT 59.806 43.478 0.00 0.00 44.07 4.44
2177 5941 2.756760 ACATCCGTATGTTGTAGTCCGT 59.243 45.455 0.00 0.00 44.07 4.69
2178 5942 3.431922 ACATCCGTATGTTGTAGTCCG 57.568 47.619 0.00 0.00 44.07 4.79
2196 5960 9.750125 CTGCACTCTAAAATATGTCTACATACA 57.250 33.333 4.98 0.00 41.15 2.29
2197 5961 9.967346 TCTGCACTCTAAAATATGTCTACATAC 57.033 33.333 4.98 0.00 41.15 2.39
2200 5964 9.534565 GAATCTGCACTCTAAAATATGTCTACA 57.465 33.333 0.00 0.00 0.00 2.74
2201 5965 9.534565 TGAATCTGCACTCTAAAATATGTCTAC 57.465 33.333 0.00 0.00 0.00 2.59
2202 5966 9.534565 GTGAATCTGCACTCTAAAATATGTCTA 57.465 33.333 0.00 0.00 35.91 2.59
2203 5967 8.263640 AGTGAATCTGCACTCTAAAATATGTCT 58.736 33.333 0.00 0.00 45.54 3.41
2204 5968 8.430801 AGTGAATCTGCACTCTAAAATATGTC 57.569 34.615 0.00 0.00 45.54 3.06
2217 5981 4.164294 GAGCAAAATGAGTGAATCTGCAC 58.836 43.478 0.00 0.00 39.05 4.57
2218 5982 3.192001 GGAGCAAAATGAGTGAATCTGCA 59.808 43.478 0.00 0.00 0.00 4.41
2219 5983 3.730061 CGGAGCAAAATGAGTGAATCTGC 60.730 47.826 0.00 0.00 0.00 4.26
2220 5984 3.438087 ACGGAGCAAAATGAGTGAATCTG 59.562 43.478 0.00 0.00 0.00 2.90
2221 5985 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
2222 5986 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
2223 5987 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
2224 5988 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
2225 5989 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
2226 5990 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
2227 5991 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
2228 5992 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
2229 5993 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
2230 5994 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
2231 5995 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
2232 5996 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
2233 5997 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
2234 5998 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
2235 5999 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
2236 6000 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
2237 6001 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
2238 6002 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
2239 6003 6.721571 ATTTCAACAAGTGACTACATACGG 57.278 37.500 0.00 0.00 35.39 4.02
2240 6004 9.302345 AGATATTTCAACAAGTGACTACATACG 57.698 33.333 0.00 0.00 35.39 3.06
2264 6028 9.169592 CCGTTCCCAAATATAAGTCTTTTTAGA 57.830 33.333 0.00 0.00 0.00 2.10
2265 6029 9.169592 TCCGTTCCCAAATATAAGTCTTTTTAG 57.830 33.333 0.00 0.00 0.00 1.85
2266 6030 9.169592 CTCCGTTCCCAAATATAAGTCTTTTTA 57.830 33.333 0.00 0.00 0.00 1.52
2267 6031 7.122204 CCTCCGTTCCCAAATATAAGTCTTTTT 59.878 37.037 0.00 0.00 0.00 1.94
2268 6032 6.602009 CCTCCGTTCCCAAATATAAGTCTTTT 59.398 38.462 0.00 0.00 0.00 2.27
2269 6033 6.120220 CCTCCGTTCCCAAATATAAGTCTTT 58.880 40.000 0.00 0.00 0.00 2.52
2270 6034 5.397559 CCCTCCGTTCCCAAATATAAGTCTT 60.398 44.000 0.00 0.00 0.00 3.01
2271 6035 4.102681 CCCTCCGTTCCCAAATATAAGTCT 59.897 45.833 0.00 0.00 0.00 3.24
2272 6036 4.102054 TCCCTCCGTTCCCAAATATAAGTC 59.898 45.833 0.00 0.00 0.00 3.01
2273 6037 4.042174 TCCCTCCGTTCCCAAATATAAGT 58.958 43.478 0.00 0.00 0.00 2.24
2274 6038 4.102681 ACTCCCTCCGTTCCCAAATATAAG 59.897 45.833 0.00 0.00 0.00 1.73
2275 6039 4.042174 ACTCCCTCCGTTCCCAAATATAA 58.958 43.478 0.00 0.00 0.00 0.98
2276 6040 3.660959 ACTCCCTCCGTTCCCAAATATA 58.339 45.455 0.00 0.00 0.00 0.86
2277 6041 2.488836 ACTCCCTCCGTTCCCAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
2278 6042 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2279 6043 1.838077 CTACTCCCTCCGTTCCCAAAT 59.162 52.381 0.00 0.00 0.00 2.32
2280 6044 1.272807 CTACTCCCTCCGTTCCCAAA 58.727 55.000 0.00 0.00 0.00 3.28
2281 6045 0.115745 ACTACTCCCTCCGTTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
2282 6046 0.115745 AACTACTCCCTCCGTTCCCA 59.884 55.000 0.00 0.00 0.00 4.37
2283 6047 0.535797 CAACTACTCCCTCCGTTCCC 59.464 60.000 0.00 0.00 0.00 3.97
2284 6048 0.535797 CCAACTACTCCCTCCGTTCC 59.464 60.000 0.00 0.00 0.00 3.62
2285 6049 1.264295 ACCAACTACTCCCTCCGTTC 58.736 55.000 0.00 0.00 0.00 3.95
2286 6050 2.174360 GTACCAACTACTCCCTCCGTT 58.826 52.381 0.00 0.00 0.00 4.44
2287 6051 1.357079 AGTACCAACTACTCCCTCCGT 59.643 52.381 0.00 0.00 32.84 4.69
2288 6052 2.140839 AGTACCAACTACTCCCTCCG 57.859 55.000 0.00 0.00 32.84 4.63
2289 6053 2.765135 GGAAGTACCAACTACTCCCTCC 59.235 54.545 0.00 0.00 34.26 4.30
2290 6054 3.700539 GAGGAAGTACCAACTACTCCCTC 59.299 52.174 0.00 0.00 42.04 4.30
2291 6055 3.566111 GGAGGAAGTACCAACTACTCCCT 60.566 52.174 13.94 0.00 45.49 4.20
2292 6056 2.765135 GGAGGAAGTACCAACTACTCCC 59.235 54.545 13.94 0.00 45.49 4.30
2293 6057 2.426381 CGGAGGAAGTACCAACTACTCC 59.574 54.545 14.52 14.52 46.54 3.85
2294 6058 3.087781 ACGGAGGAAGTACCAACTACTC 58.912 50.000 0.00 0.00 42.04 2.59
2295 6059 3.087781 GACGGAGGAAGTACCAACTACT 58.912 50.000 0.00 0.00 42.04 2.57
2296 6060 2.165234 GGACGGAGGAAGTACCAACTAC 59.835 54.545 0.00 0.00 42.04 2.73
2317 6081 2.060326 TTGAGCGACAAGTAACTCCG 57.940 50.000 0.00 0.00 34.20 4.63
2321 6085 4.992381 ATCACTTTGAGCGACAAGTAAC 57.008 40.909 0.00 0.00 39.77 2.50
2325 6089 4.033358 GGATGTATCACTTTGAGCGACAAG 59.967 45.833 0.00 0.00 39.77 3.16
2346 6114 2.512485 TTAGTTGTCGCTCAAACGGA 57.488 45.000 0.00 0.00 37.81 4.69
2357 6125 4.164221 TCCCTCCATCTGGAATTAGTTGTC 59.836 45.833 0.00 0.00 44.91 3.18
2420 6188 3.057174 AGTGCTAAGTTTCTCCGTGAGAG 60.057 47.826 4.21 0.00 39.98 3.20
2435 6203 4.460263 ACAACACTTGATTCCAGTGCTAA 58.540 39.130 15.74 0.00 37.08 3.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.