Multiple sequence alignment - TraesCS5D01G134600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G134600 chr5D 100.000 5889 0 0 1 5889 214909598 214915486 0.000000e+00 10876.0
1 TraesCS5D01G134600 chr5D 90.588 1700 97 18 1887 3558 371790896 371789232 0.000000e+00 2194.0
2 TraesCS5D01G134600 chr5D 89.430 1703 128 20 1887 3555 387110648 387112332 0.000000e+00 2100.0
3 TraesCS5D01G134600 chr5D 91.954 1305 69 10 1889 3158 323023029 323024332 0.000000e+00 1796.0
4 TraesCS5D01G134600 chr5A 97.536 2273 38 6 3625 5887 282581623 282583887 0.000000e+00 3871.0
5 TraesCS5D01G134600 chr5A 97.508 1244 26 3 74 1313 282580386 282581628 0.000000e+00 2121.0
6 TraesCS5D01G134600 chr5A 92.881 899 53 3 1888 2776 36251475 36250578 0.000000e+00 1295.0
7 TraesCS5D01G134600 chr5B 97.093 2270 48 7 3625 5887 230241784 230244042 0.000000e+00 3810.0
8 TraesCS5D01G134600 chr5B 97.646 1317 22 5 1 1313 230240478 230241789 0.000000e+00 2252.0
9 TraesCS5D01G134600 chr2A 93.129 2285 126 20 3625 5887 707002750 707000475 0.000000e+00 3321.0
10 TraesCS5D01G134600 chr2A 89.947 756 59 12 1 744 707004015 707003265 0.000000e+00 959.0
11 TraesCS5D01G134600 chr2A 94.275 524 26 2 790 1313 707003264 707002745 0.000000e+00 798.0
12 TraesCS5D01G134600 chr2D 95.325 1818 75 5 3625 5437 567486814 567485002 0.000000e+00 2878.0
13 TraesCS5D01G134600 chr2D 91.886 1750 88 19 1887 3590 421782327 421780586 0.000000e+00 2396.0
14 TraesCS5D01G134600 chr2D 88.065 1793 130 40 1888 3626 349730034 349731796 0.000000e+00 2049.0
15 TraesCS5D01G134600 chr2D 96.558 581 20 0 1313 1893 209031886 209031306 0.000000e+00 963.0
16 TraesCS5D01G134600 chr2D 96.564 582 17 1 1312 1893 392699958 392699380 0.000000e+00 961.0
17 TraesCS5D01G134600 chr2D 95.517 580 26 0 1314 1893 293681627 293681048 0.000000e+00 928.0
18 TraesCS5D01G134600 chr2D 88.274 759 70 8 1 744 567488083 567487329 0.000000e+00 891.0
19 TraesCS5D01G134600 chr2D 95.229 524 21 2 790 1313 567487328 567486809 0.000000e+00 826.0
20 TraesCS5D01G134600 chr2D 93.366 407 27 0 3220 3626 392697797 392697391 2.350000e-168 603.0
21 TraesCS5D01G134600 chr2D 87.129 404 36 5 5485 5887 567485001 567484613 1.510000e-120 444.0
22 TraesCS5D01G134600 chr2B 95.047 1817 81 4 3626 5437 680203588 680201776 0.000000e+00 2848.0
23 TraesCS5D01G134600 chr2B 89.557 699 58 8 56 744 680204797 680204104 0.000000e+00 872.0
24 TraesCS5D01G134600 chr2B 94.656 524 24 2 790 1313 680204103 680203584 0.000000e+00 809.0
25 TraesCS5D01G134600 chr2B 86.207 406 39 6 5485 5887 680201775 680201384 1.960000e-114 424.0
26 TraesCS5D01G134600 chr2B 100.000 35 0 0 1 35 680204836 680204802 1.370000e-06 65.8
27 TraesCS5D01G134600 chr4D 89.304 1795 110 30 1887 3626 455185835 455184068 0.000000e+00 2176.0
28 TraesCS5D01G134600 chr4D 96.041 581 19 2 1314 1893 455186464 455185887 0.000000e+00 942.0
29 TraesCS5D01G134600 chr4D 91.866 418 33 1 3209 3626 432422362 432421946 3.060000e-162 582.0
30 TraesCS5D01G134600 chr4D 73.047 512 108 23 4664 5161 95785977 95785482 2.840000e-33 154.0
31 TraesCS5D01G134600 chr7D 89.013 1793 122 21 1887 3625 90626647 90628418 0.000000e+00 2150.0
32 TraesCS5D01G134600 chr7D 88.242 1701 146 27 1887 3555 350141026 350139348 0.000000e+00 1984.0
33 TraesCS5D01G134600 chr7D 93.106 1233 58 6 1885 3090 496157360 496156128 0.000000e+00 1781.0
34 TraesCS5D01G134600 chr7D 96.404 584 21 0 1310 1893 310992894 310993477 0.000000e+00 963.0
35 TraesCS5D01G134600 chr7D 95.862 580 23 1 1314 1893 431880976 431881554 0.000000e+00 937.0
36 TraesCS5D01G134600 chr7D 95.690 580 25 0 1314 1893 451194356 451194935 0.000000e+00 933.0
37 TraesCS5D01G134600 chr7D 95.009 581 28 1 1314 1893 572551018 572551598 0.000000e+00 911.0
38 TraesCS5D01G134600 chr7D 87.293 543 54 8 3015 3556 545394661 545394133 1.810000e-169 606.0
39 TraesCS5D01G134600 chr7D 93.367 392 26 0 3235 3626 45825982 45826373 1.100000e-161 580.0
40 TraesCS5D01G134600 chr7D 90.602 415 35 2 3211 3625 431883205 431883615 1.120000e-151 547.0
41 TraesCS5D01G134600 chr7A 88.825 1727 107 29 1888 3555 269961822 269963521 0.000000e+00 2041.0
42 TraesCS5D01G134600 chr7A 93.372 1222 53 2 1887 3080 519097172 519095951 0.000000e+00 1783.0
43 TraesCS5D01G134600 chr7A 89.818 275 27 1 5408 5681 39248646 39248372 9.390000e-93 351.0
44 TraesCS5D01G134600 chrUn 87.886 1717 135 41 1887 3555 26909508 26911199 0.000000e+00 1951.0
45 TraesCS5D01G134600 chr3D 92.659 1226 56 4 1887 3084 424340299 424341518 0.000000e+00 1735.0
46 TraesCS5D01G134600 chr3D 85.535 878 90 19 2763 3625 352799888 352800743 0.000000e+00 883.0
47 TraesCS5D01G134600 chr3D 88.565 481 42 7 5408 5887 491638859 491638391 6.620000e-159 571.0
48 TraesCS5D01G134600 chr3D 87.470 423 38 8 5466 5887 542917256 542916848 1.920000e-129 473.0
49 TraesCS5D01G134600 chr3B 88.543 1318 119 17 1401 2704 322292174 322290875 0.000000e+00 1568.0
50 TraesCS5D01G134600 chr3B 81.887 1314 189 32 1975 3263 322296251 322297540 0.000000e+00 1062.0
51 TraesCS5D01G134600 chr3B 83.183 553 74 14 3015 3555 225354840 225354295 6.860000e-134 488.0
52 TraesCS5D01G134600 chr3B 80.702 285 35 14 2988 3257 322290658 322290379 2.780000e-48 204.0
53 TraesCS5D01G134600 chr6A 94.007 901 41 4 1888 2776 366033360 366034259 0.000000e+00 1352.0
54 TraesCS5D01G134600 chr6A 90.887 406 37 0 3220 3625 520839485 520839080 4.010000e-151 545.0
55 TraesCS5D01G134600 chr6A 90.220 409 37 2 3220 3628 100316350 100315945 1.120000e-146 531.0
56 TraesCS5D01G134600 chr1D 95.869 581 24 0 1313 1893 108260748 108260168 0.000000e+00 941.0
57 TraesCS5D01G134600 chr1D 87.137 482 48 8 5408 5887 165651669 165651200 8.690000e-148 534.0
58 TraesCS5D01G134600 chr1D 91.160 362 31 1 5408 5768 182899842 182900203 1.910000e-134 490.0
59 TraesCS5D01G134600 chr6D 94.643 392 21 0 3235 3626 178000847 178000456 5.050000e-170 608.0
60 TraesCS5D01G134600 chr7B 90.625 288 26 1 5408 5694 26234676 26234389 1.200000e-101 381.0
61 TraesCS5D01G134600 chr1B 80.677 502 66 8 3073 3555 134455303 134455792 1.560000e-95 361.0
62 TraesCS5D01G134600 chr1B 87.135 171 14 4 3075 3243 116525926 116525762 2.800000e-43 187.0
63 TraesCS5D01G134600 chr4B 76.227 387 72 17 4782 5161 135216168 135215795 2.800000e-43 187.0
64 TraesCS5D01G134600 chr4A 75.711 387 77 15 4781 5161 483946684 483947059 1.690000e-40 178.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G134600 chr5D 214909598 214915486 5888 False 10876.000000 10876 100.000000 1 5889 1 chr5D.!!$F1 5888
1 TraesCS5D01G134600 chr5D 371789232 371790896 1664 True 2194.000000 2194 90.588000 1887 3558 1 chr5D.!!$R1 1671
2 TraesCS5D01G134600 chr5D 387110648 387112332 1684 False 2100.000000 2100 89.430000 1887 3555 1 chr5D.!!$F3 1668
3 TraesCS5D01G134600 chr5D 323023029 323024332 1303 False 1796.000000 1796 91.954000 1889 3158 1 chr5D.!!$F2 1269
4 TraesCS5D01G134600 chr5A 282580386 282583887 3501 False 2996.000000 3871 97.522000 74 5887 2 chr5A.!!$F1 5813
5 TraesCS5D01G134600 chr5A 36250578 36251475 897 True 1295.000000 1295 92.881000 1888 2776 1 chr5A.!!$R1 888
6 TraesCS5D01G134600 chr5B 230240478 230244042 3564 False 3031.000000 3810 97.369500 1 5887 2 chr5B.!!$F1 5886
7 TraesCS5D01G134600 chr2A 707000475 707004015 3540 True 1692.666667 3321 92.450333 1 5887 3 chr2A.!!$R1 5886
8 TraesCS5D01G134600 chr2D 421780586 421782327 1741 True 2396.000000 2396 91.886000 1887 3590 1 chr2D.!!$R3 1703
9 TraesCS5D01G134600 chr2D 349730034 349731796 1762 False 2049.000000 2049 88.065000 1888 3626 1 chr2D.!!$F1 1738
10 TraesCS5D01G134600 chr2D 567484613 567488083 3470 True 1259.750000 2878 91.489250 1 5887 4 chr2D.!!$R5 5886
11 TraesCS5D01G134600 chr2D 209031306 209031886 580 True 963.000000 963 96.558000 1313 1893 1 chr2D.!!$R1 580
12 TraesCS5D01G134600 chr2D 293681048 293681627 579 True 928.000000 928 95.517000 1314 1893 1 chr2D.!!$R2 579
13 TraesCS5D01G134600 chr2D 392697391 392699958 2567 True 782.000000 961 94.965000 1312 3626 2 chr2D.!!$R4 2314
14 TraesCS5D01G134600 chr2B 680201384 680204836 3452 True 1003.760000 2848 93.093400 1 5887 5 chr2B.!!$R1 5886
15 TraesCS5D01G134600 chr4D 455184068 455186464 2396 True 1559.000000 2176 92.672500 1314 3626 2 chr4D.!!$R3 2312
16 TraesCS5D01G134600 chr7D 90626647 90628418 1771 False 2150.000000 2150 89.013000 1887 3625 1 chr7D.!!$F2 1738
17 TraesCS5D01G134600 chr7D 350139348 350141026 1678 True 1984.000000 1984 88.242000 1887 3555 1 chr7D.!!$R1 1668
18 TraesCS5D01G134600 chr7D 496156128 496157360 1232 True 1781.000000 1781 93.106000 1885 3090 1 chr7D.!!$R2 1205
19 TraesCS5D01G134600 chr7D 310992894 310993477 583 False 963.000000 963 96.404000 1310 1893 1 chr7D.!!$F3 583
20 TraesCS5D01G134600 chr7D 451194356 451194935 579 False 933.000000 933 95.690000 1314 1893 1 chr7D.!!$F4 579
21 TraesCS5D01G134600 chr7D 572551018 572551598 580 False 911.000000 911 95.009000 1314 1893 1 chr7D.!!$F5 579
22 TraesCS5D01G134600 chr7D 431880976 431883615 2639 False 742.000000 937 93.232000 1314 3625 2 chr7D.!!$F6 2311
23 TraesCS5D01G134600 chr7D 545394133 545394661 528 True 606.000000 606 87.293000 3015 3556 1 chr7D.!!$R3 541
24 TraesCS5D01G134600 chr7A 269961822 269963521 1699 False 2041.000000 2041 88.825000 1888 3555 1 chr7A.!!$F1 1667
25 TraesCS5D01G134600 chr7A 519095951 519097172 1221 True 1783.000000 1783 93.372000 1887 3080 1 chr7A.!!$R2 1193
26 TraesCS5D01G134600 chrUn 26909508 26911199 1691 False 1951.000000 1951 87.886000 1887 3555 1 chrUn.!!$F1 1668
27 TraesCS5D01G134600 chr3D 424340299 424341518 1219 False 1735.000000 1735 92.659000 1887 3084 1 chr3D.!!$F2 1197
28 TraesCS5D01G134600 chr3D 352799888 352800743 855 False 883.000000 883 85.535000 2763 3625 1 chr3D.!!$F1 862
29 TraesCS5D01G134600 chr3B 322296251 322297540 1289 False 1062.000000 1062 81.887000 1975 3263 1 chr3B.!!$F1 1288
30 TraesCS5D01G134600 chr3B 322290379 322292174 1795 True 886.000000 1568 84.622500 1401 3257 2 chr3B.!!$R2 1856
31 TraesCS5D01G134600 chr3B 225354295 225354840 545 True 488.000000 488 83.183000 3015 3555 1 chr3B.!!$R1 540
32 TraesCS5D01G134600 chr6A 366033360 366034259 899 False 1352.000000 1352 94.007000 1888 2776 1 chr6A.!!$F1 888
33 TraesCS5D01G134600 chr1D 108260168 108260748 580 True 941.000000 941 95.869000 1313 1893 1 chr1D.!!$R1 580

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
208 213 0.981943 GGCCAGTACTGTACCACCTT 59.018 55.000 21.18 0.0 0.00 3.50 F
1139 1163 1.153349 GGATGCACCGAGAAGGGAC 60.153 63.158 0.00 0.0 46.96 4.46 F
2457 2557 0.389948 GTGGCGAAGTCGATCTTGGT 60.390 55.000 4.59 0.0 43.02 3.67 F
3626 6790 1.021968 GCTAAACCGGCCATAACAGG 58.978 55.000 0.00 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1715 1754 0.456221 GATCGCCTCGAGGAGTTTCA 59.544 55.0 35.69 16.16 39.91 2.69 R
3043 6144 0.950555 GAACAGATGACCAGCACGCA 60.951 55.0 0.00 0.00 0.00 5.24 R
3628 6792 0.106268 TCTCAAAAACCCAGCAGGCA 60.106 50.0 0.00 0.00 40.58 4.75 R
5100 8269 2.507407 TAACCAAGGACTTGCATCCC 57.493 50.0 6.54 0.00 39.91 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
208 213 0.981943 GGCCAGTACTGTACCACCTT 59.018 55.000 21.18 0.00 0.00 3.50
262 267 1.476891 CTCACTTGGCGCTAGTTCCTA 59.523 52.381 7.64 0.00 0.00 2.94
362 371 2.780714 TGCCCTTGCCATGAAAATTTG 58.219 42.857 0.00 0.00 36.33 2.32
515 529 8.529476 TGTAAAGGTGGACTAATTAGAGAAGTC 58.471 37.037 19.38 8.05 39.12 3.01
671 693 4.824537 TCTGGATGTATCAGTAGCTGTCTC 59.175 45.833 0.00 0.00 34.15 3.36
710 732 4.095334 CCGTTTAACTACCCTGCCATAAAC 59.905 45.833 0.00 0.00 32.61 2.01
1038 1062 2.743664 GTTTTTGATGGAATGCTTGCCC 59.256 45.455 0.00 0.00 0.00 5.36
1139 1163 1.153349 GGATGCACCGAGAAGGGAC 60.153 63.158 0.00 0.00 46.96 4.46
1334 1358 2.590611 TGGTAGAACCAGGGATCCTACT 59.409 50.000 12.58 0.00 44.79 2.57
1434 1461 1.457831 GTAGGAGGAGGATGGCGGT 60.458 63.158 0.00 0.00 0.00 5.68
1715 1754 1.774894 TAAGGTGGGGAAGCGCTTGT 61.775 55.000 30.47 3.56 0.00 3.16
1741 1780 1.513158 CTCGAGGCGATCAACCAGT 59.487 57.895 3.91 0.00 34.61 4.00
1764 1803 2.626266 TCAAACACCTTCTCGACAGCTA 59.374 45.455 0.00 0.00 0.00 3.32
1804 1843 1.153706 CGGCGTCCTCCGTAATGTT 60.154 57.895 0.00 0.00 44.18 2.71
1868 1907 2.494918 GTGTAGGGCTCGTCGCAT 59.505 61.111 2.27 0.00 41.67 4.73
2058 2158 3.787001 GGGTCCCCGAAGCTCCAG 61.787 72.222 0.00 0.00 0.00 3.86
2457 2557 0.389948 GTGGCGAAGTCGATCTTGGT 60.390 55.000 4.59 0.00 43.02 3.67
3100 6212 4.008933 GCGGTGGTGACTGGAGCT 62.009 66.667 0.00 0.00 0.00 4.09
3101 6213 2.047844 CGGTGGTGACTGGAGCTG 60.048 66.667 0.00 0.00 0.00 4.24
3276 6421 1.683790 GCGAAGACATGACCGAACCG 61.684 60.000 0.00 0.00 0.00 4.44
3455 6616 4.785453 CTCTGGGAGCCGGGCAAC 62.785 72.222 23.09 14.38 0.00 4.17
3496 6657 9.903682 TCTTATTGCTTGATTTCAAAAAGAGAG 57.096 29.630 0.00 0.00 35.15 3.20
3503 6666 8.345565 GCTTGATTTCAAAAAGAGAGTTACAGA 58.654 33.333 0.00 0.00 35.15 3.41
3598 6762 1.271856 TGTGGACTAAGATTGCCCGA 58.728 50.000 0.00 0.00 0.00 5.14
3626 6790 1.021968 GCTAAACCGGCCATAACAGG 58.978 55.000 0.00 0.00 0.00 4.00
3627 6791 1.407712 GCTAAACCGGCCATAACAGGA 60.408 52.381 0.00 0.00 0.00 3.86
3628 6792 2.748465 GCTAAACCGGCCATAACAGGAT 60.748 50.000 0.00 0.00 0.00 3.24
3629 6793 1.762708 AAACCGGCCATAACAGGATG 58.237 50.000 0.00 0.00 46.00 3.51
3671 6835 8.734386 AGAAGATGCCTGATAAAACTTTAGTTG 58.266 33.333 0.00 0.00 38.44 3.16
3990 7157 5.011227 TGGTCATATGGAATGCAATGATTGG 59.989 40.000 7.35 0.00 31.49 3.16
4241 7408 1.198713 GAAGACTGATGAGGCCTGGA 58.801 55.000 12.00 0.00 0.00 3.86
5100 8269 6.994496 TCTATCTGTGCATAAGAAATGGAAGG 59.006 38.462 6.20 0.00 0.00 3.46
5464 8642 1.395826 CGGTCTCCTTCCCCTAGCAG 61.396 65.000 0.00 0.00 0.00 4.24
5631 8812 8.633075 ATTCATATTTGTTTCAATTCGCGATT 57.367 26.923 10.88 2.82 0.00 3.34
5835 9027 7.310361 CCAACACACTGGTTCCCATTTTATTAT 60.310 37.037 0.00 0.00 30.82 1.28
5888 9080 6.204882 GCACTAGATAAAACTTGTTGTCTGGT 59.795 38.462 0.00 0.00 39.78 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
362 371 6.775594 AAATCCAGGCAGGTTAAAGAATAC 57.224 37.500 0.00 0.00 39.02 1.89
515 529 3.592814 CTGCAGGATGGCATGGCG 61.593 66.667 15.27 0.44 43.97 5.69
710 732 3.490348 ACTTGGACATTTCCTGTTCTGG 58.510 45.455 0.00 0.00 43.31 3.86
1038 1062 5.931146 GGTATTCCATGAGACTATGCTTCTG 59.069 44.000 0.00 0.00 0.00 3.02
1139 1163 8.783093 TGGATAAAGTAAATTCAGTCAGTTGTG 58.217 33.333 0.00 0.00 0.00 3.33
1346 1370 5.097234 CTCCATCCTTCCCCTACAATCTAT 58.903 45.833 0.00 0.00 0.00 1.98
1350 1374 3.438131 TCTCCATCCTTCCCCTACAAT 57.562 47.619 0.00 0.00 0.00 2.71
1434 1461 1.760875 CCTCTAACCCTAGCCGCCA 60.761 63.158 0.00 0.00 0.00 5.69
1715 1754 0.456221 GATCGCCTCGAGGAGTTTCA 59.544 55.000 35.69 16.16 39.91 2.69
1741 1780 2.821546 CTGTCGAGAAGGTGTTTGACA 58.178 47.619 0.00 0.00 35.31 3.58
1868 1907 0.463620 GCCAAGGGTTGTGCTTCAAA 59.536 50.000 0.00 0.00 37.81 2.69
2457 2557 4.595538 AGACAACGCCGCGGTTCA 62.596 61.111 28.70 0.00 0.00 3.18
2469 2569 2.915659 ACGCTCCGACCCAGACAA 60.916 61.111 0.00 0.00 0.00 3.18
3043 6144 0.950555 GAACAGATGACCAGCACGCA 60.951 55.000 0.00 0.00 0.00 5.24
3184 6319 3.006677 CCCCCGATGACCACCAAT 58.993 61.111 0.00 0.00 0.00 3.16
3257 6402 1.683790 CGGTTCGGTCATGTCTTCGC 61.684 60.000 0.00 0.00 0.00 4.70
3276 6421 4.455606 CCAATTTGGTATCCAGAGACTCC 58.544 47.826 7.31 0.00 33.81 3.85
3598 6762 1.837090 CCGGTTTAGCTAGGCCCAT 59.163 57.895 0.00 0.00 0.00 4.00
3626 6790 0.968405 TCAAAAACCCAGCAGGCATC 59.032 50.000 0.00 0.00 40.58 3.91
3627 6791 0.971386 CTCAAAAACCCAGCAGGCAT 59.029 50.000 0.00 0.00 40.58 4.40
3628 6792 0.106268 TCTCAAAAACCCAGCAGGCA 60.106 50.000 0.00 0.00 40.58 4.75
3629 6793 1.000171 CTTCTCAAAAACCCAGCAGGC 60.000 52.381 0.00 0.00 40.58 4.85
3671 6835 1.199789 TGCGAACAATGAACTCCATGC 59.800 47.619 0.00 0.00 35.24 4.06
3990 7157 0.388520 GGCATGCCTCGAAAAACCAC 60.389 55.000 29.98 0.00 0.00 4.16
4084 7251 2.156917 CTGCACAGTGACAACATGGAT 58.843 47.619 4.15 0.00 0.00 3.41
4241 7408 6.039493 TCAAATGGCATTTTGTGAAGCAATTT 59.961 30.769 22.26 0.00 40.29 1.82
5100 8269 2.507407 TAACCAAGGACTTGCATCCC 57.493 50.000 6.54 0.00 39.91 3.85
5464 8642 7.987458 TCCAGAAATTGAATATGTCAGGAGTAC 59.013 37.037 0.00 0.00 37.61 2.73
5835 9027 6.486657 CACAGAAGAAACCTCAGGTTATTTGA 59.513 38.462 10.32 0.00 46.20 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.