Multiple sequence alignment - TraesCS5D01G134500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G134500 chr5D 100.000 4434 0 0 1906 6339 214715625 214720058 0.000000e+00 8189
1 TraesCS5D01G134500 chr5D 100.000 1622 0 0 1 1622 214713720 214715341 0.000000e+00 2996
2 TraesCS5D01G134500 chr5D 100.000 185 0 0 6637 6821 214720356 214720540 6.550000e-90 342
3 TraesCS5D01G134500 chr5B 96.164 4171 112 23 1912 6045 229639052 229643211 0.000000e+00 6772
4 TraesCS5D01G134500 chr5B 93.389 1074 41 14 564 1622 229637927 229638985 0.000000e+00 1563
5 TraesCS5D01G134500 chr5B 90.811 185 15 1 6637 6821 229643771 229643953 5.280000e-61 246
6 TraesCS5D01G134500 chr5B 96.403 139 5 0 1 139 229637797 229637935 5.320000e-56 230
7 TraesCS5D01G134500 chr5A 95.392 4080 114 28 1912 5942 281062218 281066272 0.000000e+00 6425
8 TraesCS5D01G134500 chr5A 93.340 1066 46 9 564 1622 281061102 281062149 0.000000e+00 1552
9 TraesCS5D01G134500 chr5A 92.432 185 12 1 6637 6821 281066485 281066667 5.250000e-66 263
10 TraesCS5D01G134500 chr5A 96.377 138 5 0 1 138 281060972 281061109 1.910000e-55 228
11 TraesCS5D01G134500 chr2B 88.679 583 53 5 5770 6339 707961153 707961735 0.000000e+00 699
12 TraesCS5D01G134500 chr2B 88.316 582 54 6 5771 6339 449123833 449123253 0.000000e+00 686
13 TraesCS5D01G134500 chr2B 89.785 186 16 2 6637 6821 707961843 707962026 1.140000e-57 235
14 TraesCS5D01G134500 chr2B 77.515 338 58 13 1160 1488 582314051 582313723 3.250000e-43 187
15 TraesCS5D01G134500 chr1B 88.136 590 57 6 5763 6339 46375138 46375727 0.000000e+00 689
16 TraesCS5D01G134500 chr1B 88.676 574 54 5 5773 6339 156846947 156846378 0.000000e+00 689
17 TraesCS5D01G134500 chr3A 88.336 583 54 6 5769 6337 562895459 562894877 0.000000e+00 688
18 TraesCS5D01G134500 chr3A 89.785 186 16 2 6637 6821 562894767 562894584 1.140000e-57 235
19 TraesCS5D01G134500 chr6A 88.124 581 56 6 5772 6339 78033824 78033244 0.000000e+00 678
20 TraesCS5D01G134500 chr6A 88.083 579 56 6 5772 6337 77899550 77898972 0.000000e+00 675
21 TraesCS5D01G134500 chr6A 93.427 426 26 2 139 564 602356932 602356509 1.250000e-176 630
22 TraesCS5D01G134500 chrUn 87.780 581 59 4 5771 6339 67352397 67351817 0.000000e+00 669
23 TraesCS5D01G134500 chrUn 90.860 186 14 2 6637 6821 95231022 95231205 5.280000e-61 246
24 TraesCS5D01G134500 chr7D 87.414 580 61 6 5772 6339 596065278 596065857 0.000000e+00 656
25 TraesCS5D01G134500 chr6D 94.033 419 23 2 147 565 3319623 3319207 9.650000e-178 634
26 TraesCS5D01G134500 chr4D 93.868 424 21 4 141 564 423881848 423882266 9.650000e-178 634
27 TraesCS5D01G134500 chr2D 93.647 425 25 2 140 564 448507637 448507215 9.650000e-178 634
28 TraesCS5D01G134500 chr1A 93.647 425 25 2 141 565 37619239 37618817 9.650000e-178 634
29 TraesCS5D01G134500 chr1A 93.632 424 24 2 141 564 147684662 147685082 1.250000e-176 630
30 TraesCS5D01G134500 chr7A 93.256 430 26 3 141 569 439630046 439630473 1.250000e-176 630
31 TraesCS5D01G134500 chr4A 93.412 425 26 2 141 565 737302110 737301688 4.490000e-176 628
32 TraesCS5D01G134500 chr2A 93.224 428 27 2 137 564 688238853 688238428 4.490000e-176 628
33 TraesCS5D01G134500 chr2A 78.571 224 44 4 4292 4513 639057055 639057276 1.980000e-30 145
34 TraesCS5D01G134500 chr1D 90.860 186 14 2 6637 6821 136949046 136948863 5.280000e-61 246
35 TraesCS5D01G134500 chr1D 89.247 186 17 2 6637 6821 406666877 406667060 5.320000e-56 230
36 TraesCS5D01G134500 chr7B 90.323 186 15 2 6637 6821 484274484 484274301 2.460000e-59 241
37 TraesCS5D01G134500 chr6B 90.323 186 15 2 6637 6821 10690848 10691031 2.460000e-59 241


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G134500 chr5D 214713720 214720540 6820 False 3842.333333 8189 100.00000 1 6821 3 chr5D.!!$F1 6820
1 TraesCS5D01G134500 chr5B 229637797 229643953 6156 False 2202.750000 6772 94.19175 1 6821 4 chr5B.!!$F1 6820
2 TraesCS5D01G134500 chr5A 281060972 281066667 5695 False 2117.000000 6425 94.38525 1 6821 4 chr5A.!!$F1 6820
3 TraesCS5D01G134500 chr2B 449123253 449123833 580 True 686.000000 686 88.31600 5771 6339 1 chr2B.!!$R1 568
4 TraesCS5D01G134500 chr2B 707961153 707962026 873 False 467.000000 699 89.23200 5770 6821 2 chr2B.!!$F1 1051
5 TraesCS5D01G134500 chr1B 46375138 46375727 589 False 689.000000 689 88.13600 5763 6339 1 chr1B.!!$F1 576
6 TraesCS5D01G134500 chr1B 156846378 156846947 569 True 689.000000 689 88.67600 5773 6339 1 chr1B.!!$R1 566
7 TraesCS5D01G134500 chr3A 562894584 562895459 875 True 461.500000 688 89.06050 5769 6821 2 chr3A.!!$R1 1052
8 TraesCS5D01G134500 chr6A 78033244 78033824 580 True 678.000000 678 88.12400 5772 6339 1 chr6A.!!$R2 567
9 TraesCS5D01G134500 chr6A 77898972 77899550 578 True 675.000000 675 88.08300 5772 6337 1 chr6A.!!$R1 565
10 TraesCS5D01G134500 chrUn 67351817 67352397 580 True 669.000000 669 87.78000 5771 6339 1 chrUn.!!$R1 568
11 TraesCS5D01G134500 chr7D 596065278 596065857 579 False 656.000000 656 87.41400 5772 6339 1 chr7D.!!$F1 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
900 920 0.460284 ATGCTACTCCGCGTCCAAAG 60.460 55.000 4.92 0.00 0.00 2.77 F
2239 2272 0.242555 TATGCACGTCTCGCTGTCAA 59.757 50.000 0.00 0.00 0.00 3.18 F
3195 3247 0.523519 GCTTTTCTCCGGAGCAAAGG 59.476 55.000 39.48 30.69 36.45 3.11 F
4524 4592 1.302832 CAACGCCTCTGCCTTCCTT 60.303 57.895 0.00 0.00 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1910 1932 5.289675 CGAATAGTTAAGGATGGATGCGATC 59.710 44.0 0.00 0.0 0.00 3.69 R
3704 3757 0.548031 GGAGGAGCATGGACATGGAA 59.452 55.0 13.63 0.0 39.16 3.53 R
4723 4803 0.953471 TGTCCATGGAAACGGCTTCG 60.953 55.0 18.20 0.0 34.56 3.79 R
5882 5975 0.899717 GGTAGGGTGGTGTGTCGGTA 60.900 60.0 0.00 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
132 133 9.141400 GTCACCAACTCACTTTTAATAGTAGAG 57.859 37.037 16.35 16.35 33.43 2.43
133 134 9.085645 TCACCAACTCACTTTTAATAGTAGAGA 57.914 33.333 20.88 7.83 32.49 3.10
134 135 9.877178 CACCAACTCACTTTTAATAGTAGAGAT 57.123 33.333 20.88 12.88 32.49 2.75
146 147 8.783999 TTAATAGTAGAGATTTTTCGAGAGCG 57.216 34.615 0.00 0.00 39.35 5.03
147 148 4.035278 AGTAGAGATTTTTCGAGAGCGG 57.965 45.455 0.00 0.00 38.28 5.52
148 149 3.695060 AGTAGAGATTTTTCGAGAGCGGA 59.305 43.478 0.00 0.00 38.28 5.54
149 150 2.882324 AGAGATTTTTCGAGAGCGGAC 58.118 47.619 0.00 0.00 38.28 4.79
150 151 2.231478 AGAGATTTTTCGAGAGCGGACA 59.769 45.455 0.00 0.00 38.28 4.02
151 152 3.118956 AGAGATTTTTCGAGAGCGGACAT 60.119 43.478 0.00 0.00 38.28 3.06
152 153 3.600388 AGATTTTTCGAGAGCGGACATT 58.400 40.909 0.00 0.00 38.28 2.71
153 154 4.003648 AGATTTTTCGAGAGCGGACATTT 58.996 39.130 0.00 0.00 38.28 2.32
154 155 3.536158 TTTTTCGAGAGCGGACATTTG 57.464 42.857 0.00 0.00 38.28 2.32
155 156 1.438651 TTTCGAGAGCGGACATTTGG 58.561 50.000 0.00 0.00 38.28 3.28
156 157 1.019278 TTCGAGAGCGGACATTTGGC 61.019 55.000 0.00 0.00 38.28 4.52
157 158 1.448540 CGAGAGCGGACATTTGGCT 60.449 57.895 0.00 0.00 40.29 4.75
159 160 3.502572 GAGCGGACATTTGGCTCC 58.497 61.111 0.95 0.00 45.67 4.70
160 161 2.044946 AGCGGACATTTGGCTCCC 60.045 61.111 0.00 0.00 29.31 4.30
161 162 3.508840 GCGGACATTTGGCTCCCG 61.509 66.667 0.00 0.00 42.74 5.14
162 163 2.824041 CGGACATTTGGCTCCCGG 60.824 66.667 0.00 0.00 36.81 5.73
163 164 2.440247 GGACATTTGGCTCCCGGG 60.440 66.667 16.85 16.85 0.00 5.73
164 165 2.674754 GACATTTGGCTCCCGGGA 59.325 61.111 25.06 25.06 0.00 5.14
165 166 1.452108 GACATTTGGCTCCCGGGAG 60.452 63.158 41.29 41.29 44.56 4.30
173 174 3.554342 CTCCCGGGAGCCATGGAG 61.554 72.222 36.90 12.91 36.38 3.86
185 186 2.220653 CCATGGAGGCCTTTTCTTGA 57.779 50.000 6.77 0.00 0.00 3.02
186 187 2.528564 CCATGGAGGCCTTTTCTTGAA 58.471 47.619 6.77 0.00 0.00 2.69
187 188 2.899256 CCATGGAGGCCTTTTCTTGAAA 59.101 45.455 6.77 0.00 0.00 2.69
188 189 3.324556 CCATGGAGGCCTTTTCTTGAAAA 59.675 43.478 6.77 8.07 0.00 2.29
189 190 4.309933 CATGGAGGCCTTTTCTTGAAAAC 58.690 43.478 6.77 0.00 0.00 2.43
190 191 3.370104 TGGAGGCCTTTTCTTGAAAACA 58.630 40.909 6.77 0.00 0.00 2.83
191 192 3.772025 TGGAGGCCTTTTCTTGAAAACAA 59.228 39.130 6.77 0.00 0.00 2.83
192 193 4.223923 TGGAGGCCTTTTCTTGAAAACAAA 59.776 37.500 6.77 0.00 0.00 2.83
193 194 5.104569 TGGAGGCCTTTTCTTGAAAACAAAT 60.105 36.000 6.77 0.00 0.00 2.32
194 195 5.466728 GGAGGCCTTTTCTTGAAAACAAATC 59.533 40.000 6.77 0.00 0.00 2.17
195 196 5.988287 AGGCCTTTTCTTGAAAACAAATCA 58.012 33.333 0.00 0.00 0.00 2.57
196 197 6.413892 AGGCCTTTTCTTGAAAACAAATCAA 58.586 32.000 0.00 0.00 35.60 2.57
197 198 6.883756 AGGCCTTTTCTTGAAAACAAATCAAA 59.116 30.769 0.00 0.00 36.43 2.69
198 199 7.392953 AGGCCTTTTCTTGAAAACAAATCAAAA 59.607 29.630 0.00 0.00 36.43 2.44
199 200 8.190122 GGCCTTTTCTTGAAAACAAATCAAAAT 58.810 29.630 0.00 0.00 36.43 1.82
200 201 9.571810 GCCTTTTCTTGAAAACAAATCAAAATT 57.428 25.926 4.61 0.00 36.43 1.82
212 213 9.553418 AAACAAATCAAAATTCAAACTTTTCGG 57.447 25.926 0.00 0.00 0.00 4.30
213 214 8.262715 ACAAATCAAAATTCAAACTTTTCGGT 57.737 26.923 0.00 0.00 0.00 4.69
214 215 8.726068 ACAAATCAAAATTCAAACTTTTCGGTT 58.274 25.926 0.00 0.00 0.00 4.44
215 216 9.553418 CAAATCAAAATTCAAACTTTTCGGTTT 57.447 25.926 0.00 0.00 39.62 3.27
216 217 9.767684 AAATCAAAATTCAAACTTTTCGGTTTC 57.232 25.926 0.00 0.00 37.32 2.78
217 218 7.891183 TCAAAATTCAAACTTTTCGGTTTCA 57.109 28.000 0.00 0.00 37.32 2.69
218 219 8.311650 TCAAAATTCAAACTTTTCGGTTTCAA 57.688 26.923 0.00 0.00 37.32 2.69
219 220 8.774586 TCAAAATTCAAACTTTTCGGTTTCAAA 58.225 25.926 0.00 0.00 37.32 2.69
220 221 9.387123 CAAAATTCAAACTTTTCGGTTTCAAAA 57.613 25.926 0.00 0.00 37.32 2.44
221 222 9.952188 AAAATTCAAACTTTTCGGTTTCAAAAA 57.048 22.222 0.00 0.00 37.32 1.94
256 257 8.940768 AAAATTGTGCAAGTAAACAAGTATGT 57.059 26.923 0.00 0.00 43.14 2.29
302 303 7.448588 TCAGAATGAAAAACGTTGAAATGTG 57.551 32.000 0.00 0.00 45.97 3.21
303 304 7.254137 TCAGAATGAAAAACGTTGAAATGTGA 58.746 30.769 0.00 0.00 45.97 3.58
304 305 7.219917 TCAGAATGAAAAACGTTGAAATGTGAC 59.780 33.333 0.00 0.00 45.97 3.67
305 306 7.009083 CAGAATGAAAAACGTTGAAATGTGACA 59.991 33.333 0.00 0.00 39.69 3.58
306 307 7.706179 AGAATGAAAAACGTTGAAATGTGACAT 59.294 29.630 0.00 0.00 0.00 3.06
307 308 6.566310 TGAAAAACGTTGAAATGTGACATG 57.434 33.333 0.00 0.00 0.00 3.21
308 309 6.096036 TGAAAAACGTTGAAATGTGACATGT 58.904 32.000 0.00 0.00 0.00 3.21
309 310 7.251281 TGAAAAACGTTGAAATGTGACATGTA 58.749 30.769 0.00 0.00 0.00 2.29
310 311 7.219154 TGAAAAACGTTGAAATGTGACATGTAC 59.781 33.333 0.00 0.00 0.00 2.90
311 312 4.742438 ACGTTGAAATGTGACATGTACC 57.258 40.909 0.00 0.00 0.00 3.34
312 313 4.130857 ACGTTGAAATGTGACATGTACCA 58.869 39.130 0.00 0.00 0.00 3.25
313 314 4.576873 ACGTTGAAATGTGACATGTACCAA 59.423 37.500 0.00 0.00 0.00 3.67
314 315 5.066634 ACGTTGAAATGTGACATGTACCAAA 59.933 36.000 0.00 0.00 0.00 3.28
315 316 5.974158 CGTTGAAATGTGACATGTACCAAAA 59.026 36.000 0.00 0.00 0.00 2.44
316 317 6.142161 CGTTGAAATGTGACATGTACCAAAAG 59.858 38.462 0.00 0.00 0.00 2.27
317 318 6.083098 TGAAATGTGACATGTACCAAAAGG 57.917 37.500 0.00 0.00 0.00 3.11
318 319 5.830457 TGAAATGTGACATGTACCAAAAGGA 59.170 36.000 0.00 0.00 0.00 3.36
319 320 5.705609 AATGTGACATGTACCAAAAGGAC 57.294 39.130 0.00 0.00 0.00 3.85
320 321 4.157849 TGTGACATGTACCAAAAGGACA 57.842 40.909 0.00 0.00 0.00 4.02
321 322 4.527944 TGTGACATGTACCAAAAGGACAA 58.472 39.130 0.00 0.00 0.00 3.18
322 323 4.950475 TGTGACATGTACCAAAAGGACAAA 59.050 37.500 0.00 0.00 0.00 2.83
323 324 5.596361 TGTGACATGTACCAAAAGGACAAAT 59.404 36.000 0.00 0.00 0.00 2.32
324 325 6.097554 TGTGACATGTACCAAAAGGACAAATT 59.902 34.615 0.00 0.00 0.00 1.82
325 326 6.640907 GTGACATGTACCAAAAGGACAAATTC 59.359 38.462 0.00 0.00 0.00 2.17
326 327 6.322456 TGACATGTACCAAAAGGACAAATTCA 59.678 34.615 0.00 0.00 0.00 2.57
327 328 7.015098 TGACATGTACCAAAAGGACAAATTCAT 59.985 33.333 0.00 0.00 0.00 2.57
328 329 7.153985 ACATGTACCAAAAGGACAAATTCATG 58.846 34.615 0.00 0.00 35.45 3.07
329 330 6.095432 TGTACCAAAAGGACAAATTCATGG 57.905 37.500 0.00 0.00 0.00 3.66
330 331 5.600484 TGTACCAAAAGGACAAATTCATGGT 59.400 36.000 0.00 0.00 42.27 3.55
331 332 5.213891 ACCAAAAGGACAAATTCATGGTC 57.786 39.130 0.00 0.00 35.04 4.02
332 333 4.901250 ACCAAAAGGACAAATTCATGGTCT 59.099 37.500 0.00 0.00 35.04 3.85
333 334 6.074648 ACCAAAAGGACAAATTCATGGTCTA 58.925 36.000 0.00 0.00 35.04 2.59
334 335 6.209391 ACCAAAAGGACAAATTCATGGTCTAG 59.791 38.462 0.00 0.00 35.04 2.43
335 336 6.350445 CCAAAAGGACAAATTCATGGTCTAGG 60.350 42.308 0.00 0.00 0.00 3.02
336 337 5.779241 AAGGACAAATTCATGGTCTAGGA 57.221 39.130 0.00 0.00 0.00 2.94
337 338 5.365021 AGGACAAATTCATGGTCTAGGAG 57.635 43.478 0.00 0.00 0.00 3.69
338 339 4.164988 AGGACAAATTCATGGTCTAGGAGG 59.835 45.833 0.00 0.00 0.00 4.30
339 340 4.164221 GGACAAATTCATGGTCTAGGAGGA 59.836 45.833 0.00 0.00 0.00 3.71
340 341 5.163152 GGACAAATTCATGGTCTAGGAGGAT 60.163 44.000 0.00 0.00 0.00 3.24
341 342 5.688807 ACAAATTCATGGTCTAGGAGGATG 58.311 41.667 0.00 0.00 0.00 3.51
342 343 5.429762 ACAAATTCATGGTCTAGGAGGATGA 59.570 40.000 0.00 0.00 0.00 2.92
343 344 6.069440 ACAAATTCATGGTCTAGGAGGATGAA 60.069 38.462 0.00 0.00 37.42 2.57
344 345 6.776887 AATTCATGGTCTAGGAGGATGAAT 57.223 37.500 0.00 0.00 42.72 2.57
345 346 7.878621 AATTCATGGTCTAGGAGGATGAATA 57.121 36.000 14.90 0.00 40.97 1.75
346 347 6.924913 TTCATGGTCTAGGAGGATGAATAG 57.075 41.667 0.00 0.00 30.05 1.73
347 348 5.970289 TCATGGTCTAGGAGGATGAATAGT 58.030 41.667 0.00 0.00 0.00 2.12
348 349 7.103745 TCATGGTCTAGGAGGATGAATAGTA 57.896 40.000 0.00 0.00 0.00 1.82
349 350 7.713518 TCATGGTCTAGGAGGATGAATAGTAT 58.286 38.462 0.00 0.00 0.00 2.12
350 351 7.836685 TCATGGTCTAGGAGGATGAATAGTATC 59.163 40.741 0.00 0.00 0.00 2.24
351 352 7.103745 TGGTCTAGGAGGATGAATAGTATCA 57.896 40.000 0.00 0.00 0.00 2.15
352 353 7.713518 TGGTCTAGGAGGATGAATAGTATCAT 58.286 38.462 0.00 0.00 42.62 2.45
353 354 7.617329 TGGTCTAGGAGGATGAATAGTATCATG 59.383 40.741 0.00 0.00 40.08 3.07
354 355 7.617723 GGTCTAGGAGGATGAATAGTATCATGT 59.382 40.741 0.00 0.00 40.08 3.21
355 356 8.465999 GTCTAGGAGGATGAATAGTATCATGTG 58.534 40.741 0.00 0.00 40.08 3.21
356 357 8.173412 TCTAGGAGGATGAATAGTATCATGTGT 58.827 37.037 0.00 0.00 40.08 3.72
357 358 7.623999 AGGAGGATGAATAGTATCATGTGTT 57.376 36.000 0.00 0.00 40.08 3.32
358 359 8.727100 AGGAGGATGAATAGTATCATGTGTTA 57.273 34.615 0.00 0.00 40.08 2.41
359 360 9.159254 AGGAGGATGAATAGTATCATGTGTTAA 57.841 33.333 0.00 0.00 40.08 2.01
360 361 9.778741 GGAGGATGAATAGTATCATGTGTTAAA 57.221 33.333 0.00 0.00 40.08 1.52
366 367 8.682710 TGAATAGTATCATGTGTTAAAAAGCCC 58.317 33.333 0.00 0.00 0.00 5.19
367 368 5.914898 AGTATCATGTGTTAAAAAGCCCC 57.085 39.130 0.00 0.00 0.00 5.80
368 369 5.329399 AGTATCATGTGTTAAAAAGCCCCA 58.671 37.500 0.00 0.00 0.00 4.96
369 370 4.806640 ATCATGTGTTAAAAAGCCCCAG 57.193 40.909 0.00 0.00 0.00 4.45
370 371 3.838565 TCATGTGTTAAAAAGCCCCAGA 58.161 40.909 0.00 0.00 0.00 3.86
371 372 4.415596 TCATGTGTTAAAAAGCCCCAGAT 58.584 39.130 0.00 0.00 0.00 2.90
372 373 4.837860 TCATGTGTTAAAAAGCCCCAGATT 59.162 37.500 0.00 0.00 0.00 2.40
373 374 5.306678 TCATGTGTTAAAAAGCCCCAGATTT 59.693 36.000 0.00 0.00 31.52 2.17
374 375 4.954875 TGTGTTAAAAAGCCCCAGATTTG 58.045 39.130 0.00 0.00 30.45 2.32
375 376 4.407296 TGTGTTAAAAAGCCCCAGATTTGT 59.593 37.500 0.00 0.00 30.45 2.83
376 377 4.988540 GTGTTAAAAAGCCCCAGATTTGTC 59.011 41.667 0.00 0.00 30.45 3.18
377 378 4.898861 TGTTAAAAAGCCCCAGATTTGTCT 59.101 37.500 0.00 0.00 30.45 3.41
378 379 5.365314 TGTTAAAAAGCCCCAGATTTGTCTT 59.635 36.000 0.00 0.00 30.45 3.01
379 380 6.126911 TGTTAAAAAGCCCCAGATTTGTCTTT 60.127 34.615 0.00 0.00 30.45 2.52
380 381 5.372343 AAAAAGCCCCAGATTTGTCTTTT 57.628 34.783 0.00 0.00 35.89 2.27
381 382 5.372343 AAAAGCCCCAGATTTGTCTTTTT 57.628 34.783 0.00 0.00 31.97 1.94
398 399 2.818130 TTTTGCACAGCCCTCATTTC 57.182 45.000 0.00 0.00 0.00 2.17
399 400 1.702182 TTTGCACAGCCCTCATTTCA 58.298 45.000 0.00 0.00 0.00 2.69
400 401 1.702182 TTGCACAGCCCTCATTTCAA 58.298 45.000 0.00 0.00 0.00 2.69
401 402 0.961019 TGCACAGCCCTCATTTCAAC 59.039 50.000 0.00 0.00 0.00 3.18
402 403 0.961019 GCACAGCCCTCATTTCAACA 59.039 50.000 0.00 0.00 0.00 3.33
403 404 1.547372 GCACAGCCCTCATTTCAACAT 59.453 47.619 0.00 0.00 0.00 2.71
404 405 2.754552 GCACAGCCCTCATTTCAACATA 59.245 45.455 0.00 0.00 0.00 2.29
405 406 3.382546 GCACAGCCCTCATTTCAACATAT 59.617 43.478 0.00 0.00 0.00 1.78
406 407 4.142093 GCACAGCCCTCATTTCAACATATT 60.142 41.667 0.00 0.00 0.00 1.28
407 408 5.625197 GCACAGCCCTCATTTCAACATATTT 60.625 40.000 0.00 0.00 0.00 1.40
408 409 6.400568 CACAGCCCTCATTTCAACATATTTT 58.599 36.000 0.00 0.00 0.00 1.82
409 410 6.311935 CACAGCCCTCATTTCAACATATTTTG 59.688 38.462 0.00 0.00 0.00 2.44
410 411 5.292589 CAGCCCTCATTTCAACATATTTTGC 59.707 40.000 0.00 0.00 0.00 3.68
411 412 4.571984 GCCCTCATTTCAACATATTTTGCC 59.428 41.667 0.00 0.00 0.00 4.52
412 413 5.118286 CCCTCATTTCAACATATTTTGCCC 58.882 41.667 0.00 0.00 0.00 5.36
413 414 5.104817 CCCTCATTTCAACATATTTTGCCCT 60.105 40.000 0.00 0.00 0.00 5.19
414 415 5.813672 CCTCATTTCAACATATTTTGCCCTG 59.186 40.000 0.00 0.00 0.00 4.45
415 416 6.351202 CCTCATTTCAACATATTTTGCCCTGA 60.351 38.462 0.00 0.00 0.00 3.86
416 417 7.002250 TCATTTCAACATATTTTGCCCTGAA 57.998 32.000 0.00 0.00 0.00 3.02
417 418 7.448420 TCATTTCAACATATTTTGCCCTGAAA 58.552 30.769 0.00 0.00 36.73 2.69
418 419 7.935755 TCATTTCAACATATTTTGCCCTGAAAA 59.064 29.630 0.00 0.00 36.30 2.29
419 420 8.732531 CATTTCAACATATTTTGCCCTGAAAAT 58.267 29.630 0.00 0.00 36.30 1.82
420 421 7.670009 TTCAACATATTTTGCCCTGAAAATG 57.330 32.000 0.00 0.00 36.44 2.32
421 422 6.767456 TCAACATATTTTGCCCTGAAAATGT 58.233 32.000 0.00 0.00 36.44 2.71
422 423 7.901029 TCAACATATTTTGCCCTGAAAATGTA 58.099 30.769 0.00 0.00 36.44 2.29
423 424 7.816995 TCAACATATTTTGCCCTGAAAATGTAC 59.183 33.333 0.00 0.00 36.44 2.90
424 425 7.238486 ACATATTTTGCCCTGAAAATGTACA 57.762 32.000 0.00 0.00 36.44 2.90
425 426 7.096551 ACATATTTTGCCCTGAAAATGTACAC 58.903 34.615 0.00 0.00 36.44 2.90
426 427 5.543507 ATTTTGCCCTGAAAATGTACACA 57.456 34.783 0.00 0.00 34.84 3.72
427 428 4.314740 TTTGCCCTGAAAATGTACACAC 57.685 40.909 0.00 0.00 0.00 3.82
428 429 2.937519 TGCCCTGAAAATGTACACACA 58.062 42.857 0.00 0.00 39.52 3.72
430 431 3.255395 TGCCCTGAAAATGTACACACATG 59.745 43.478 0.00 0.00 44.83 3.21
431 432 3.255642 GCCCTGAAAATGTACACACATGT 59.744 43.478 0.00 0.00 44.83 3.21
432 433 4.797471 CCCTGAAAATGTACACACATGTG 58.203 43.478 24.25 24.25 44.83 3.21
446 447 4.707030 CACATGTGTGTTATGCCTTCAT 57.293 40.909 18.03 0.00 40.96 2.57
447 448 4.417506 CACATGTGTGTTATGCCTTCATG 58.582 43.478 18.03 0.00 40.96 3.07
448 449 4.081406 ACATGTGTGTTATGCCTTCATGT 58.919 39.130 0.00 0.00 39.25 3.21
449 450 4.082625 ACATGTGTGTTATGCCTTCATGTG 60.083 41.667 0.00 0.00 41.39 3.21
450 451 3.485394 TGTGTGTTATGCCTTCATGTGT 58.515 40.909 0.00 0.00 34.22 3.72
451 452 4.646572 TGTGTGTTATGCCTTCATGTGTA 58.353 39.130 0.00 0.00 34.22 2.90
452 453 5.252547 TGTGTGTTATGCCTTCATGTGTAT 58.747 37.500 0.00 0.00 34.22 2.29
453 454 5.123661 TGTGTGTTATGCCTTCATGTGTATG 59.876 40.000 0.00 0.00 34.22 2.39
454 455 5.123820 GTGTGTTATGCCTTCATGTGTATGT 59.876 40.000 0.00 0.00 35.73 2.29
455 456 5.123661 TGTGTTATGCCTTCATGTGTATGTG 59.876 40.000 0.00 0.00 35.73 3.21
456 457 5.123820 GTGTTATGCCTTCATGTGTATGTGT 59.876 40.000 0.00 0.00 35.73 3.72
457 458 5.123661 TGTTATGCCTTCATGTGTATGTGTG 59.876 40.000 0.00 0.00 35.73 3.82
458 459 1.811965 TGCCTTCATGTGTATGTGTGC 59.188 47.619 0.00 0.00 35.73 4.57
459 460 2.086869 GCCTTCATGTGTATGTGTGCT 58.913 47.619 0.00 0.00 35.73 4.40
460 461 2.489329 GCCTTCATGTGTATGTGTGCTT 59.511 45.455 0.00 0.00 35.73 3.91
461 462 3.057315 GCCTTCATGTGTATGTGTGCTTT 60.057 43.478 0.00 0.00 35.73 3.51
462 463 4.726416 CCTTCATGTGTATGTGTGCTTTC 58.274 43.478 0.00 0.00 35.73 2.62
463 464 4.456911 CCTTCATGTGTATGTGTGCTTTCT 59.543 41.667 0.00 0.00 35.73 2.52
464 465 5.048504 CCTTCATGTGTATGTGTGCTTTCTT 60.049 40.000 0.00 0.00 35.73 2.52
465 466 6.389830 TTCATGTGTATGTGTGCTTTCTTT 57.610 33.333 0.00 0.00 35.73 2.52
466 467 6.389830 TCATGTGTATGTGTGCTTTCTTTT 57.610 33.333 0.00 0.00 35.73 2.27
467 468 6.804677 TCATGTGTATGTGTGCTTTCTTTTT 58.195 32.000 0.00 0.00 35.73 1.94
468 469 6.917477 TCATGTGTATGTGTGCTTTCTTTTTC 59.083 34.615 0.00 0.00 35.73 2.29
469 470 6.201226 TGTGTATGTGTGCTTTCTTTTTCA 57.799 33.333 0.00 0.00 0.00 2.69
470 471 6.264832 TGTGTATGTGTGCTTTCTTTTTCAG 58.735 36.000 0.00 0.00 0.00 3.02
471 472 6.094742 TGTGTATGTGTGCTTTCTTTTTCAGA 59.905 34.615 0.00 0.00 0.00 3.27
472 473 6.972328 GTGTATGTGTGCTTTCTTTTTCAGAA 59.028 34.615 0.00 0.00 39.99 3.02
473 474 7.649306 GTGTATGTGTGCTTTCTTTTTCAGAAT 59.351 33.333 0.00 0.00 41.42 2.40
474 475 8.196771 TGTATGTGTGCTTTCTTTTTCAGAATT 58.803 29.630 0.00 0.00 41.42 2.17
475 476 9.034544 GTATGTGTGCTTTCTTTTTCAGAATTT 57.965 29.630 0.00 0.00 41.42 1.82
476 477 7.903995 TGTGTGCTTTCTTTTTCAGAATTTT 57.096 28.000 0.00 0.00 41.42 1.82
477 478 8.321650 TGTGTGCTTTCTTTTTCAGAATTTTT 57.678 26.923 0.00 0.00 41.42 1.94
534 535 9.612066 ATTCAAAATTTTTAAAACAGAGCTCCA 57.388 25.926 10.93 0.00 0.00 3.86
535 536 9.612066 TTCAAAATTTTTAAAACAGAGCTCCAT 57.388 25.926 10.93 0.00 0.00 3.41
536 537 9.044150 TCAAAATTTTTAAAACAGAGCTCCATG 57.956 29.630 10.93 5.69 0.00 3.66
537 538 7.967890 AAATTTTTAAAACAGAGCTCCATGG 57.032 32.000 10.93 4.97 0.00 3.66
538 539 6.916360 ATTTTTAAAACAGAGCTCCATGGA 57.084 33.333 15.27 15.27 0.00 3.41
539 540 5.964958 TTTTAAAACAGAGCTCCATGGAG 57.035 39.130 33.73 33.73 44.56 3.86
547 548 3.160047 CTCCATGGAGCTCGGCCT 61.160 66.667 28.45 0.00 35.31 5.19
548 549 3.157252 TCCATGGAGCTCGGCCTC 61.157 66.667 11.44 0.00 0.00 4.70
554 555 2.982130 GAGCTCGGCCTCCAAAGA 59.018 61.111 0.00 0.00 0.00 2.52
555 556 1.448717 GAGCTCGGCCTCCAAAGAC 60.449 63.158 0.00 0.00 0.00 3.01
556 557 2.172483 GAGCTCGGCCTCCAAAGACA 62.172 60.000 0.00 0.00 0.00 3.41
557 558 1.302511 GCTCGGCCTCCAAAGACAA 60.303 57.895 0.00 0.00 0.00 3.18
558 559 0.678048 GCTCGGCCTCCAAAGACAAT 60.678 55.000 0.00 0.00 0.00 2.71
559 560 1.406887 GCTCGGCCTCCAAAGACAATA 60.407 52.381 0.00 0.00 0.00 1.90
560 561 2.746472 GCTCGGCCTCCAAAGACAATAT 60.746 50.000 0.00 0.00 0.00 1.28
561 562 3.134458 CTCGGCCTCCAAAGACAATATC 58.866 50.000 0.00 0.00 0.00 1.63
562 563 2.158813 TCGGCCTCCAAAGACAATATCC 60.159 50.000 0.00 0.00 0.00 2.59
574 575 8.462016 CCAAAGACAATATCCGAGATTTTTCTT 58.538 33.333 4.52 4.52 0.00 2.52
587 588 7.814587 CCGAGATTTTTCTTGCTTTTCCTATTT 59.185 33.333 0.00 0.00 0.00 1.40
588 589 9.840427 CGAGATTTTTCTTGCTTTTCCTATTTA 57.160 29.630 0.00 0.00 0.00 1.40
639 640 3.830178 TCGGTTCACAAATACTCTCTCCA 59.170 43.478 0.00 0.00 0.00 3.86
650 651 7.928706 ACAAATACTCTCTCCATTCGGAAATAG 59.071 37.037 0.00 0.00 42.21 1.73
668 669 9.612620 CGGAAATAGCTATCATGGTTTTATTTC 57.387 33.333 6.72 14.77 36.24 2.17
719 720 6.990341 TTTGTGAATCAGATGTATGTGGAG 57.010 37.500 0.00 0.00 0.00 3.86
722 723 5.187576 TGTGAATCAGATGTATGTGGAGACA 59.812 40.000 0.00 0.00 36.22 3.41
740 742 6.422701 TGGAGACATTTTAGTGTGTTAGTTCG 59.577 38.462 0.00 0.00 33.40 3.95
900 920 0.460284 ATGCTACTCCGCGTCCAAAG 60.460 55.000 4.92 0.00 0.00 2.77
2239 2272 0.242555 TATGCACGTCTCGCTGTCAA 59.757 50.000 0.00 0.00 0.00 3.18
2308 2341 3.850122 ACGGGAGCAATTAAAGAAAGC 57.150 42.857 0.00 0.00 0.00 3.51
2466 2501 1.684450 GGGCCTAGCTAACTCTCTCAC 59.316 57.143 0.84 0.00 0.00 3.51
2467 2502 2.379972 GGCCTAGCTAACTCTCTCACA 58.620 52.381 0.00 0.00 0.00 3.58
2490 2528 8.034215 CACATCTCAGAGTAAAAGATCTTCACT 58.966 37.037 18.02 18.02 0.00 3.41
2910 2960 4.881273 TGTTTTGCATGACTGTTGACTACT 59.119 37.500 0.00 0.00 0.00 2.57
3167 3218 1.594862 CGAATGTCTTCCGAGGCAATC 59.405 52.381 0.00 0.00 41.61 2.67
3186 3237 1.864711 TCGTGAACAAGCTTTTCTCCG 59.135 47.619 16.84 17.04 0.00 4.63
3195 3247 0.523519 GCTTTTCTCCGGAGCAAAGG 59.476 55.000 39.48 30.69 36.45 3.11
3205 3257 1.929836 CGGAGCAAAGGAAGAATCTCG 59.070 52.381 0.00 0.00 0.00 4.04
3210 3262 2.730402 GCAAAGGAAGAATCTCGCAAGC 60.730 50.000 0.00 0.00 37.18 4.01
3290 3342 4.196193 TGTGAAGTTCAAACAAGTCCGAT 58.804 39.130 7.25 0.00 0.00 4.18
3653 3706 4.221422 CGCGACATCCCCATCGGT 62.221 66.667 0.00 0.00 38.78 4.69
3819 3872 4.250116 GATGATGCTCGTTACTCATCCT 57.750 45.455 0.00 0.00 38.58 3.24
3856 3909 2.125961 CGCCCGCCTACTAGAAGGT 61.126 63.158 0.00 0.00 39.02 3.50
3870 3923 6.335781 ACTAGAAGGTAAGAGATCTCACCT 57.664 41.667 23.03 23.03 43.28 4.00
3871 3924 7.454553 ACTAGAAGGTAAGAGATCTCACCTA 57.545 40.000 26.84 15.36 40.54 3.08
3872 3925 7.514721 ACTAGAAGGTAAGAGATCTCACCTAG 58.485 42.308 26.84 22.87 40.54 3.02
4031 4094 6.144078 TGTTGCTTTTCCTTTCTACCTTTC 57.856 37.500 0.00 0.00 0.00 2.62
4302 4370 2.869801 GTGGTGTTTTCAGATCGACACA 59.130 45.455 15.72 7.62 43.06 3.72
4524 4592 1.302832 CAACGCCTCTGCCTTCCTT 60.303 57.895 0.00 0.00 0.00 3.36
4674 4743 2.111043 CCATCATAACGGCGGGCT 59.889 61.111 13.24 0.00 0.00 5.19
4717 4797 2.959030 GCCTTTCTTTGTGGACTTTCCT 59.041 45.455 0.00 0.00 37.46 3.36
4719 4799 4.207165 CCTTTCTTTGTGGACTTTCCTGA 58.793 43.478 0.00 0.00 37.46 3.86
4723 4803 1.967319 TTGTGGACTTTCCTGACTGC 58.033 50.000 0.00 0.00 37.46 4.40
4745 4825 0.110486 AGCCGTTTCCATGGACAACT 59.890 50.000 24.65 13.80 0.00 3.16
4797 4880 0.106708 AGACGCGGGTATCATGCAAT 59.893 50.000 12.47 0.00 0.00 3.56
4804 4887 2.291465 CGGGTATCATGCAATGGAAGTG 59.709 50.000 0.00 0.00 46.73 3.16
4829 4912 8.698210 TGTTAACCTGATTATTAGTACCACGAT 58.302 33.333 2.48 0.00 0.00 3.73
4974 5058 0.976641 TCCTCAACCTCGTCTGCATT 59.023 50.000 0.00 0.00 0.00 3.56
5010 5094 0.682292 TCTACATGGTGTCCAACGCA 59.318 50.000 0.00 0.00 36.95 5.24
5328 5412 0.318441 TCCTCAACGTCTTCCTGCTG 59.682 55.000 0.00 0.00 0.00 4.41
5337 5421 1.690633 CTTCCTGCTGGGCTCCCTA 60.691 63.158 10.07 0.00 36.94 3.53
5660 5744 1.384643 AGAGGATCGGGGGAAAGGG 60.385 63.158 0.00 0.00 42.67 3.95
5853 5946 3.711842 CGGACAACGCGCACACAT 61.712 61.111 5.73 0.00 34.82 3.21
5877 5970 3.382546 CCCAAGGCAAGATACAAAGATGG 59.617 47.826 0.00 0.00 0.00 3.51
5882 5975 3.019564 GCAAGATACAAAGATGGCAGGT 58.980 45.455 0.00 0.00 0.00 4.00
5898 5991 2.212110 GGTACCGACACACCACCCT 61.212 63.158 0.00 0.00 34.77 4.34
5945 6038 2.594303 CCACAACGAAGCCAGGCA 60.594 61.111 15.80 0.00 0.00 4.75
5970 6063 2.045926 CGGTGCCTCCAAGAAGGG 60.046 66.667 0.00 0.00 36.88 3.95
5978 6071 0.172803 CTCCAAGAAGGGTACGACCG 59.827 60.000 0.00 0.00 39.83 4.79
5992 6085 3.792053 GACCGTGGATAGCCGCCAG 62.792 68.421 4.71 0.00 41.79 4.85
6080 6326 3.927555 CTTCAGAAAGGGTACGGCA 57.072 52.632 0.00 0.00 0.00 5.69
6168 6426 3.064931 GGTGAACCTTAACTCCGTCAAG 58.935 50.000 0.00 0.00 0.00 3.02
6230 6488 3.295273 ACCTGAGACGCACGCTCA 61.295 61.111 13.66 13.66 39.90 4.26
6671 6930 1.760613 GACCACATCGAGGAACCCATA 59.239 52.381 3.06 0.00 0.00 2.74
6672 6931 2.368875 GACCACATCGAGGAACCCATAT 59.631 50.000 3.06 0.00 0.00 1.78
6679 6938 0.977395 GAGGAACCCATATCCCTCCG 59.023 60.000 0.00 0.00 39.33 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
132 133 4.091424 CAAATGTCCGCTCTCGAAAAATC 58.909 43.478 0.00 0.00 38.10 2.17
133 134 3.119849 CCAAATGTCCGCTCTCGAAAAAT 60.120 43.478 0.00 0.00 38.10 1.82
134 135 2.225491 CCAAATGTCCGCTCTCGAAAAA 59.775 45.455 0.00 0.00 38.10 1.94
135 136 1.804151 CCAAATGTCCGCTCTCGAAAA 59.196 47.619 0.00 0.00 38.10 2.29
136 137 1.438651 CCAAATGTCCGCTCTCGAAA 58.561 50.000 0.00 0.00 38.10 3.46
137 138 1.019278 GCCAAATGTCCGCTCTCGAA 61.019 55.000 0.00 0.00 38.10 3.71
138 139 1.447838 GCCAAATGTCCGCTCTCGA 60.448 57.895 0.00 0.00 38.10 4.04
139 140 1.424493 GAGCCAAATGTCCGCTCTCG 61.424 60.000 1.14 0.00 44.52 4.04
140 141 1.092345 GGAGCCAAATGTCCGCTCTC 61.092 60.000 8.08 0.00 46.60 3.20
141 142 1.078143 GGAGCCAAATGTCCGCTCT 60.078 57.895 8.08 0.00 46.60 4.09
142 143 2.115291 GGGAGCCAAATGTCCGCTC 61.115 63.158 0.00 0.00 46.67 5.03
143 144 2.044946 GGGAGCCAAATGTCCGCT 60.045 61.111 0.00 0.00 33.13 5.52
144 145 3.508840 CGGGAGCCAAATGTCCGC 61.509 66.667 0.00 0.00 34.17 5.54
145 146 2.824041 CCGGGAGCCAAATGTCCG 60.824 66.667 0.00 0.00 40.32 4.79
146 147 2.440247 CCCGGGAGCCAAATGTCC 60.440 66.667 18.48 0.00 0.00 4.02
147 148 1.452108 CTCCCGGGAGCCAAATGTC 60.452 63.158 36.90 0.00 35.31 3.06
148 149 2.677228 CTCCCGGGAGCCAAATGT 59.323 61.111 36.90 0.00 35.31 2.71
156 157 3.554342 CTCCATGGCTCCCGGGAG 61.554 72.222 41.29 41.29 44.56 4.30
165 166 6.315534 TTTTCAAGAAAAGGCCTCCATGGC 62.316 45.833 5.23 0.00 46.23 4.40
166 167 2.220653 TCAAGAAAAGGCCTCCATGG 57.779 50.000 5.23 4.97 39.35 3.66
167 168 4.202243 TGTTTTCAAGAAAAGGCCTCCATG 60.202 41.667 5.23 1.95 40.53 3.66
168 169 3.966665 TGTTTTCAAGAAAAGGCCTCCAT 59.033 39.130 5.23 0.00 40.53 3.41
169 170 3.370104 TGTTTTCAAGAAAAGGCCTCCA 58.630 40.909 5.23 0.14 40.53 3.86
170 171 4.400529 TTGTTTTCAAGAAAAGGCCTCC 57.599 40.909 5.23 0.00 40.53 4.30
171 172 6.048509 TGATTTGTTTTCAAGAAAAGGCCTC 58.951 36.000 5.23 0.00 40.53 4.70
172 173 5.988287 TGATTTGTTTTCAAGAAAAGGCCT 58.012 33.333 0.00 0.00 40.53 5.19
173 174 6.676237 TTGATTTGTTTTCAAGAAAAGGCC 57.324 33.333 8.14 0.00 40.53 5.19
174 175 9.571810 AATTTTGATTTGTTTTCAAGAAAAGGC 57.428 25.926 8.14 0.00 40.53 4.35
186 187 9.553418 CCGAAAAGTTTGAATTTTGATTTGTTT 57.447 25.926 0.00 0.00 30.22 2.83
187 188 8.726068 ACCGAAAAGTTTGAATTTTGATTTGTT 58.274 25.926 0.00 0.00 30.22 2.83
188 189 8.262715 ACCGAAAAGTTTGAATTTTGATTTGT 57.737 26.923 0.00 0.00 30.22 2.83
189 190 9.553418 AAACCGAAAAGTTTGAATTTTGATTTG 57.447 25.926 0.00 0.00 38.51 2.32
190 191 9.767684 GAAACCGAAAAGTTTGAATTTTGATTT 57.232 25.926 0.00 0.00 40.01 2.17
191 192 8.940952 TGAAACCGAAAAGTTTGAATTTTGATT 58.059 25.926 0.00 0.00 40.01 2.57
192 193 8.485976 TGAAACCGAAAAGTTTGAATTTTGAT 57.514 26.923 0.00 0.00 40.01 2.57
193 194 7.891183 TGAAACCGAAAAGTTTGAATTTTGA 57.109 28.000 0.00 0.00 40.01 2.69
194 195 8.941127 TTTGAAACCGAAAAGTTTGAATTTTG 57.059 26.923 0.00 0.00 40.01 2.44
195 196 9.952188 TTTTTGAAACCGAAAAGTTTGAATTTT 57.048 22.222 0.00 0.00 40.01 1.82
230 231 9.377312 ACATACTTGTTTACTTGCACAATTTTT 57.623 25.926 0.00 0.00 32.50 1.94
231 232 8.940768 ACATACTTGTTTACTTGCACAATTTT 57.059 26.923 0.00 0.00 32.50 1.82
232 233 8.940768 AACATACTTGTTTACTTGCACAATTT 57.059 26.923 0.00 0.00 43.57 1.82
234 235 9.624697 CATAACATACTTGTTTACTTGCACAAT 57.375 29.630 0.00 0.00 43.57 2.71
235 236 8.625651 ACATAACATACTTGTTTACTTGCACAA 58.374 29.630 0.00 0.00 43.57 3.33
236 237 8.160521 ACATAACATACTTGTTTACTTGCACA 57.839 30.769 0.00 0.00 43.57 4.57
237 238 8.504005 AGACATAACATACTTGTTTACTTGCAC 58.496 33.333 0.00 0.00 43.57 4.57
238 239 8.615878 AGACATAACATACTTGTTTACTTGCA 57.384 30.769 0.00 0.00 43.57 4.08
245 246 9.502091 ACACACATAGACATAACATACTTGTTT 57.498 29.630 0.00 0.00 43.57 2.83
266 267 9.618410 CGTTTTTCATTCTGAAATTTTACACAC 57.382 29.630 3.36 0.00 44.75 3.82
267 268 9.360093 ACGTTTTTCATTCTGAAATTTTACACA 57.640 25.926 3.36 0.00 44.75 3.72
274 275 9.919348 CATTTCAACGTTTTTCATTCTGAAATT 57.081 25.926 13.54 1.71 44.75 1.82
275 276 9.097257 ACATTTCAACGTTTTTCATTCTGAAAT 57.903 25.926 11.37 11.37 44.75 2.17
276 277 8.379161 CACATTTCAACGTTTTTCATTCTGAAA 58.621 29.630 0.00 3.25 43.84 2.69
277 278 7.757173 TCACATTTCAACGTTTTTCATTCTGAA 59.243 29.630 0.00 0.00 34.03 3.02
278 279 7.219917 GTCACATTTCAACGTTTTTCATTCTGA 59.780 33.333 0.00 0.00 0.00 3.27
279 280 7.009083 TGTCACATTTCAACGTTTTTCATTCTG 59.991 33.333 0.00 0.00 0.00 3.02
280 281 7.032580 TGTCACATTTCAACGTTTTTCATTCT 58.967 30.769 0.00 0.00 0.00 2.40
281 282 7.215696 TGTCACATTTCAACGTTTTTCATTC 57.784 32.000 0.00 0.00 0.00 2.67
282 283 7.277539 ACATGTCACATTTCAACGTTTTTCATT 59.722 29.630 0.00 0.00 0.00 2.57
283 284 6.756074 ACATGTCACATTTCAACGTTTTTCAT 59.244 30.769 0.00 0.00 0.00 2.57
284 285 6.096036 ACATGTCACATTTCAACGTTTTTCA 58.904 32.000 0.00 0.00 0.00 2.69
285 286 6.567769 ACATGTCACATTTCAACGTTTTTC 57.432 33.333 0.00 0.00 0.00 2.29
286 287 6.474102 GGTACATGTCACATTTCAACGTTTTT 59.526 34.615 0.00 0.00 0.00 1.94
287 288 5.974751 GGTACATGTCACATTTCAACGTTTT 59.025 36.000 0.00 0.00 0.00 2.43
288 289 5.066634 TGGTACATGTCACATTTCAACGTTT 59.933 36.000 0.00 0.00 0.00 3.60
289 290 4.576873 TGGTACATGTCACATTTCAACGTT 59.423 37.500 0.00 0.00 0.00 3.99
290 291 4.130857 TGGTACATGTCACATTTCAACGT 58.869 39.130 0.00 0.00 0.00 3.99
291 292 4.740741 TGGTACATGTCACATTTCAACG 57.259 40.909 0.00 0.00 0.00 4.10
292 293 6.420604 CCTTTTGGTACATGTCACATTTCAAC 59.579 38.462 0.00 0.00 39.30 3.18
293 294 6.322456 TCCTTTTGGTACATGTCACATTTCAA 59.678 34.615 0.00 0.00 39.30 2.69
294 295 5.830457 TCCTTTTGGTACATGTCACATTTCA 59.170 36.000 0.00 0.00 39.30 2.69
295 296 6.149633 GTCCTTTTGGTACATGTCACATTTC 58.850 40.000 0.00 0.00 39.30 2.17
296 297 5.596361 TGTCCTTTTGGTACATGTCACATTT 59.404 36.000 0.00 0.00 39.30 2.32
297 298 5.136828 TGTCCTTTTGGTACATGTCACATT 58.863 37.500 0.00 0.00 39.30 2.71
298 299 4.724399 TGTCCTTTTGGTACATGTCACAT 58.276 39.130 0.00 0.00 39.30 3.21
299 300 4.157849 TGTCCTTTTGGTACATGTCACA 57.842 40.909 0.00 0.00 39.30 3.58
300 301 5.508200 TTTGTCCTTTTGGTACATGTCAC 57.492 39.130 0.00 0.00 39.30 3.67
301 302 6.322456 TGAATTTGTCCTTTTGGTACATGTCA 59.678 34.615 0.00 0.00 39.30 3.58
302 303 6.744112 TGAATTTGTCCTTTTGGTACATGTC 58.256 36.000 0.00 0.00 39.30 3.06
303 304 6.723298 TGAATTTGTCCTTTTGGTACATGT 57.277 33.333 2.69 2.69 39.30 3.21
304 305 6.591062 CCATGAATTTGTCCTTTTGGTACATG 59.409 38.462 0.00 0.00 39.30 3.21
305 306 6.269769 ACCATGAATTTGTCCTTTTGGTACAT 59.730 34.615 0.00 0.00 39.30 2.29
306 307 5.600484 ACCATGAATTTGTCCTTTTGGTACA 59.400 36.000 0.00 0.00 41.38 2.90
307 308 6.015434 AGACCATGAATTTGTCCTTTTGGTAC 60.015 38.462 0.00 0.00 41.38 3.34
308 309 6.074648 AGACCATGAATTTGTCCTTTTGGTA 58.925 36.000 0.00 0.00 41.38 3.25
309 310 4.901250 AGACCATGAATTTGTCCTTTTGGT 59.099 37.500 0.00 0.00 41.38 3.67
310 311 5.473066 AGACCATGAATTTGTCCTTTTGG 57.527 39.130 0.00 0.00 42.21 3.28
311 312 6.434028 TCCTAGACCATGAATTTGTCCTTTTG 59.566 38.462 0.00 0.00 0.00 2.44
312 313 6.552008 TCCTAGACCATGAATTTGTCCTTTT 58.448 36.000 0.00 0.00 0.00 2.27
313 314 6.139679 TCCTAGACCATGAATTTGTCCTTT 57.860 37.500 0.00 0.00 0.00 3.11
314 315 5.339530 CCTCCTAGACCATGAATTTGTCCTT 60.340 44.000 0.00 0.00 0.00 3.36
315 316 4.164988 CCTCCTAGACCATGAATTTGTCCT 59.835 45.833 0.00 0.00 0.00 3.85
316 317 4.164221 TCCTCCTAGACCATGAATTTGTCC 59.836 45.833 0.00 0.00 0.00 4.02
317 318 5.359194 TCCTCCTAGACCATGAATTTGTC 57.641 43.478 0.00 0.00 0.00 3.18
318 319 5.429762 TCATCCTCCTAGACCATGAATTTGT 59.570 40.000 0.00 0.00 0.00 2.83
319 320 5.933617 TCATCCTCCTAGACCATGAATTTG 58.066 41.667 0.00 0.00 0.00 2.32
320 321 6.581388 TTCATCCTCCTAGACCATGAATTT 57.419 37.500 0.00 0.00 30.30 1.82
321 322 6.776887 ATTCATCCTCCTAGACCATGAATT 57.223 37.500 0.00 0.00 39.92 2.17
322 323 7.021873 ACTATTCATCCTCCTAGACCATGAAT 58.978 38.462 16.63 16.63 43.42 2.57
323 324 6.385443 ACTATTCATCCTCCTAGACCATGAA 58.615 40.000 0.00 0.33 37.75 2.57
324 325 5.970289 ACTATTCATCCTCCTAGACCATGA 58.030 41.667 0.00 0.00 0.00 3.07
325 326 7.617329 TGATACTATTCATCCTCCTAGACCATG 59.383 40.741 0.00 0.00 0.00 3.66
326 327 7.713518 TGATACTATTCATCCTCCTAGACCAT 58.286 38.462 0.00 0.00 0.00 3.55
327 328 7.103745 TGATACTATTCATCCTCCTAGACCA 57.896 40.000 0.00 0.00 0.00 4.02
328 329 7.617723 ACATGATACTATTCATCCTCCTAGACC 59.382 40.741 0.00 0.00 34.09 3.85
329 330 8.465999 CACATGATACTATTCATCCTCCTAGAC 58.534 40.741 0.00 0.00 34.09 2.59
330 331 8.173412 ACACATGATACTATTCATCCTCCTAGA 58.827 37.037 0.00 0.00 34.09 2.43
331 332 8.359875 ACACATGATACTATTCATCCTCCTAG 57.640 38.462 0.00 0.00 34.09 3.02
332 333 8.727100 AACACATGATACTATTCATCCTCCTA 57.273 34.615 0.00 0.00 34.09 2.94
333 334 7.623999 AACACATGATACTATTCATCCTCCT 57.376 36.000 0.00 0.00 34.09 3.69
334 335 9.778741 TTTAACACATGATACTATTCATCCTCC 57.221 33.333 0.00 0.00 34.09 4.30
340 341 8.682710 GGGCTTTTTAACACATGATACTATTCA 58.317 33.333 0.00 0.00 0.00 2.57
341 342 8.135529 GGGGCTTTTTAACACATGATACTATTC 58.864 37.037 0.00 0.00 0.00 1.75
342 343 7.617723 TGGGGCTTTTTAACACATGATACTATT 59.382 33.333 0.00 0.00 0.00 1.73
343 344 7.122715 TGGGGCTTTTTAACACATGATACTAT 58.877 34.615 0.00 0.00 0.00 2.12
344 345 6.486056 TGGGGCTTTTTAACACATGATACTA 58.514 36.000 0.00 0.00 0.00 1.82
345 346 5.329399 TGGGGCTTTTTAACACATGATACT 58.671 37.500 0.00 0.00 0.00 2.12
346 347 5.417580 TCTGGGGCTTTTTAACACATGATAC 59.582 40.000 0.00 0.00 0.00 2.24
347 348 5.575157 TCTGGGGCTTTTTAACACATGATA 58.425 37.500 0.00 0.00 0.00 2.15
348 349 4.415596 TCTGGGGCTTTTTAACACATGAT 58.584 39.130 0.00 0.00 0.00 2.45
349 350 3.838565 TCTGGGGCTTTTTAACACATGA 58.161 40.909 0.00 0.00 0.00 3.07
350 351 4.806640 ATCTGGGGCTTTTTAACACATG 57.193 40.909 0.00 0.00 0.00 3.21
351 352 5.071653 ACAAATCTGGGGCTTTTTAACACAT 59.928 36.000 0.00 0.00 0.00 3.21
352 353 4.407296 ACAAATCTGGGGCTTTTTAACACA 59.593 37.500 0.00 0.00 0.00 3.72
353 354 4.956085 ACAAATCTGGGGCTTTTTAACAC 58.044 39.130 0.00 0.00 0.00 3.32
354 355 4.898861 AGACAAATCTGGGGCTTTTTAACA 59.101 37.500 0.00 0.00 32.29 2.41
355 356 5.468540 AGACAAATCTGGGGCTTTTTAAC 57.531 39.130 0.00 0.00 32.29 2.01
356 357 6.493189 AAAGACAAATCTGGGGCTTTTTAA 57.507 33.333 0.00 0.00 34.48 1.52
357 358 6.493189 AAAAGACAAATCTGGGGCTTTTTA 57.507 33.333 0.00 0.00 34.48 1.52
358 359 5.372343 AAAAGACAAATCTGGGGCTTTTT 57.628 34.783 0.00 0.00 34.48 1.94
359 360 5.372343 AAAAAGACAAATCTGGGGCTTTT 57.628 34.783 0.00 0.00 35.69 2.27
378 379 2.433604 TGAAATGAGGGCTGTGCAAAAA 59.566 40.909 0.00 0.00 0.00 1.94
379 380 2.037901 TGAAATGAGGGCTGTGCAAAA 58.962 42.857 0.00 0.00 0.00 2.44
380 381 1.702182 TGAAATGAGGGCTGTGCAAA 58.298 45.000 0.00 0.00 0.00 3.68
381 382 1.340889 GTTGAAATGAGGGCTGTGCAA 59.659 47.619 0.00 0.00 0.00 4.08
382 383 0.961019 GTTGAAATGAGGGCTGTGCA 59.039 50.000 0.00 0.00 0.00 4.57
383 384 0.961019 TGTTGAAATGAGGGCTGTGC 59.039 50.000 0.00 0.00 0.00 4.57
384 385 5.587388 AATATGTTGAAATGAGGGCTGTG 57.413 39.130 0.00 0.00 0.00 3.66
385 386 6.400568 CAAAATATGTTGAAATGAGGGCTGT 58.599 36.000 0.00 0.00 0.00 4.40
386 387 5.292589 GCAAAATATGTTGAAATGAGGGCTG 59.707 40.000 9.96 0.00 0.00 4.85
387 388 5.422145 GCAAAATATGTTGAAATGAGGGCT 58.578 37.500 9.96 0.00 0.00 5.19
388 389 4.571984 GGCAAAATATGTTGAAATGAGGGC 59.428 41.667 9.96 0.00 0.00 5.19
389 390 5.104817 AGGGCAAAATATGTTGAAATGAGGG 60.105 40.000 9.96 0.00 0.00 4.30
390 391 5.813672 CAGGGCAAAATATGTTGAAATGAGG 59.186 40.000 9.96 0.00 0.00 3.86
391 392 6.632909 TCAGGGCAAAATATGTTGAAATGAG 58.367 36.000 9.96 0.00 0.00 2.90
392 393 6.602410 TCAGGGCAAAATATGTTGAAATGA 57.398 33.333 9.96 6.43 0.00 2.57
393 394 7.670009 TTTCAGGGCAAAATATGTTGAAATG 57.330 32.000 9.96 4.30 34.32 2.32
394 395 8.732531 CATTTTCAGGGCAAAATATGTTGAAAT 58.267 29.630 9.96 2.92 36.65 2.17
395 396 7.718753 ACATTTTCAGGGCAAAATATGTTGAAA 59.281 29.630 9.96 0.67 34.77 2.69
396 397 7.222872 ACATTTTCAGGGCAAAATATGTTGAA 58.777 30.769 9.96 0.00 34.77 2.69
397 398 6.767456 ACATTTTCAGGGCAAAATATGTTGA 58.233 32.000 9.96 0.00 34.77 3.18
398 399 7.601886 TGTACATTTTCAGGGCAAAATATGTTG 59.398 33.333 0.81 0.81 34.77 3.33
399 400 7.602265 GTGTACATTTTCAGGGCAAAATATGTT 59.398 33.333 0.00 0.00 34.77 2.71
400 401 7.096551 GTGTACATTTTCAGGGCAAAATATGT 58.903 34.615 0.00 0.00 34.77 2.29
401 402 7.063308 GTGTGTACATTTTCAGGGCAAAATATG 59.937 37.037 0.00 0.00 34.77 1.78
402 403 7.096551 GTGTGTACATTTTCAGGGCAAAATAT 58.903 34.615 0.00 0.00 34.77 1.28
403 404 6.040955 TGTGTGTACATTTTCAGGGCAAAATA 59.959 34.615 0.00 0.00 34.77 1.40
404 405 5.163364 TGTGTGTACATTTTCAGGGCAAAAT 60.163 36.000 0.00 0.00 36.57 1.82
405 406 4.160439 TGTGTGTACATTTTCAGGGCAAAA 59.840 37.500 0.00 0.00 0.00 2.44
406 407 3.701542 TGTGTGTACATTTTCAGGGCAAA 59.298 39.130 0.00 0.00 0.00 3.68
407 408 3.291584 TGTGTGTACATTTTCAGGGCAA 58.708 40.909 0.00 0.00 0.00 4.52
408 409 2.937519 TGTGTGTACATTTTCAGGGCA 58.062 42.857 0.00 0.00 0.00 5.36
409 410 3.255642 ACATGTGTGTACATTTTCAGGGC 59.744 43.478 0.00 0.00 45.01 5.19
410 411 4.797471 CACATGTGTGTACATTTTCAGGG 58.203 43.478 18.03 0.00 45.01 4.45
423 424 6.126914 CATGAAGGCATAACACACATGTGTG 61.127 44.000 43.01 43.01 44.88 3.82
424 425 4.082625 CATGAAGGCATAACACACATGTGT 60.083 41.667 25.76 25.76 46.35 3.72
425 426 4.082625 ACATGAAGGCATAACACACATGTG 60.083 41.667 24.25 24.25 42.90 3.21
426 427 4.081406 ACATGAAGGCATAACACACATGT 58.919 39.130 0.00 0.00 40.84 3.21
427 428 4.082625 ACACATGAAGGCATAACACACATG 60.083 41.667 0.00 0.00 39.27 3.21
428 429 4.081406 ACACATGAAGGCATAACACACAT 58.919 39.130 0.00 0.00 32.27 3.21
429 430 3.485394 ACACATGAAGGCATAACACACA 58.515 40.909 0.00 0.00 32.27 3.72
430 431 5.123820 ACATACACATGAAGGCATAACACAC 59.876 40.000 0.00 0.00 35.96 3.82
431 432 5.123661 CACATACACATGAAGGCATAACACA 59.876 40.000 0.00 0.00 35.96 3.72
432 433 5.123820 ACACATACACATGAAGGCATAACAC 59.876 40.000 0.00 0.00 35.96 3.32
433 434 5.123661 CACACATACACATGAAGGCATAACA 59.876 40.000 0.00 0.00 35.96 2.41
434 435 5.572211 CACACATACACATGAAGGCATAAC 58.428 41.667 0.00 0.00 35.96 1.89
435 436 4.096231 GCACACATACACATGAAGGCATAA 59.904 41.667 0.00 0.00 35.96 1.90
436 437 3.627123 GCACACATACACATGAAGGCATA 59.373 43.478 0.00 0.00 35.96 3.14
437 438 2.424601 GCACACATACACATGAAGGCAT 59.575 45.455 0.00 0.00 35.96 4.40
438 439 1.811965 GCACACATACACATGAAGGCA 59.188 47.619 0.00 0.00 35.96 4.75
439 440 2.086869 AGCACACATACACATGAAGGC 58.913 47.619 0.00 0.00 35.96 4.35
440 441 4.456911 AGAAAGCACACATACACATGAAGG 59.543 41.667 0.00 0.00 35.96 3.46
441 442 5.618056 AGAAAGCACACATACACATGAAG 57.382 39.130 0.00 0.00 35.96 3.02
442 443 6.389830 AAAGAAAGCACACATACACATGAA 57.610 33.333 0.00 0.00 35.96 2.57
443 444 6.389830 AAAAGAAAGCACACATACACATGA 57.610 33.333 0.00 0.00 35.96 3.07
444 445 6.696583 TGAAAAAGAAAGCACACATACACATG 59.303 34.615 0.00 0.00 38.21 3.21
445 446 6.804677 TGAAAAAGAAAGCACACATACACAT 58.195 32.000 0.00 0.00 0.00 3.21
446 447 6.094742 TCTGAAAAAGAAAGCACACATACACA 59.905 34.615 0.00 0.00 29.54 3.72
447 448 6.494842 TCTGAAAAAGAAAGCACACATACAC 58.505 36.000 0.00 0.00 29.54 2.90
448 449 6.691754 TCTGAAAAAGAAAGCACACATACA 57.308 33.333 0.00 0.00 29.54 2.29
508 509 9.612066 TGGAGCTCTGTTTTAAAAATTTTGAAT 57.388 25.926 14.64 0.00 0.00 2.57
509 510 9.612066 ATGGAGCTCTGTTTTAAAAATTTTGAA 57.388 25.926 14.64 0.00 0.00 2.69
510 511 9.044150 CATGGAGCTCTGTTTTAAAAATTTTGA 57.956 29.630 14.64 0.00 0.00 2.69
511 512 8.284693 CCATGGAGCTCTGTTTTAAAAATTTTG 58.715 33.333 14.64 0.00 0.00 2.44
512 513 8.210265 TCCATGGAGCTCTGTTTTAAAAATTTT 58.790 29.630 11.44 0.00 0.00 1.82
513 514 7.734942 TCCATGGAGCTCTGTTTTAAAAATTT 58.265 30.769 11.44 0.00 0.00 1.82
514 515 7.301868 TCCATGGAGCTCTGTTTTAAAAATT 57.698 32.000 11.44 0.00 0.00 1.82
515 516 6.916360 TCCATGGAGCTCTGTTTTAAAAAT 57.084 33.333 11.44 0.00 0.00 1.82
516 517 6.331369 CTCCATGGAGCTCTGTTTTAAAAA 57.669 37.500 28.45 0.00 35.31 1.94
517 518 5.964958 CTCCATGGAGCTCTGTTTTAAAA 57.035 39.130 28.45 0.00 35.31 1.52
530 531 3.160047 AGGCCGAGCTCCATGGAG 61.160 66.667 33.73 33.73 44.56 3.86
531 532 3.157252 GAGGCCGAGCTCCATGGA 61.157 66.667 15.27 15.27 0.00 3.41
532 533 4.247380 GGAGGCCGAGCTCCATGG 62.247 72.222 4.97 4.97 39.45 3.66
533 534 3.473647 TGGAGGCCGAGCTCCATG 61.474 66.667 8.47 0.00 44.02 3.66
535 536 2.927856 TTTGGAGGCCGAGCTCCA 60.928 61.111 8.47 7.35 46.84 3.86
536 537 2.124942 CTTTGGAGGCCGAGCTCC 60.125 66.667 8.47 0.00 40.05 4.70
537 538 1.448717 GTCTTTGGAGGCCGAGCTC 60.449 63.158 2.73 2.73 0.00 4.09
538 539 1.768684 TTGTCTTTGGAGGCCGAGCT 61.769 55.000 0.00 0.00 0.00 4.09
539 540 0.678048 ATTGTCTTTGGAGGCCGAGC 60.678 55.000 0.00 0.00 0.00 5.03
540 541 2.691409 TATTGTCTTTGGAGGCCGAG 57.309 50.000 0.00 0.00 0.00 4.63
541 542 2.158813 GGATATTGTCTTTGGAGGCCGA 60.159 50.000 0.00 0.00 0.00 5.54
542 543 2.222027 GGATATTGTCTTTGGAGGCCG 58.778 52.381 0.00 0.00 0.00 6.13
543 544 2.158813 TCGGATATTGTCTTTGGAGGCC 60.159 50.000 0.00 0.00 0.00 5.19
544 545 3.134458 CTCGGATATTGTCTTTGGAGGC 58.866 50.000 0.00 0.00 0.00 4.70
545 546 4.672587 TCTCGGATATTGTCTTTGGAGG 57.327 45.455 0.00 0.00 0.00 4.30
546 547 7.559590 AAAATCTCGGATATTGTCTTTGGAG 57.440 36.000 0.00 0.00 0.00 3.86
547 548 7.829211 AGAAAAATCTCGGATATTGTCTTTGGA 59.171 33.333 0.00 0.00 0.00 3.53
548 549 7.989826 AGAAAAATCTCGGATATTGTCTTTGG 58.010 34.615 0.00 0.00 0.00 3.28
549 550 9.282247 CAAGAAAAATCTCGGATATTGTCTTTG 57.718 33.333 10.25 2.71 0.00 2.77
550 551 7.970614 GCAAGAAAAATCTCGGATATTGTCTTT 59.029 33.333 10.25 0.82 0.00 2.52
551 552 7.337942 AGCAAGAAAAATCTCGGATATTGTCTT 59.662 33.333 8.38 8.38 0.00 3.01
552 553 6.825721 AGCAAGAAAAATCTCGGATATTGTCT 59.174 34.615 0.00 0.00 0.00 3.41
553 554 7.020914 AGCAAGAAAAATCTCGGATATTGTC 57.979 36.000 0.00 0.00 0.00 3.18
554 555 7.396540 AAGCAAGAAAAATCTCGGATATTGT 57.603 32.000 0.00 0.00 0.00 2.71
555 556 8.693542 AAAAGCAAGAAAAATCTCGGATATTG 57.306 30.769 0.00 0.00 0.00 1.90
556 557 7.976175 GGAAAAGCAAGAAAAATCTCGGATATT 59.024 33.333 0.00 0.00 0.00 1.28
557 558 7.340487 AGGAAAAGCAAGAAAAATCTCGGATAT 59.660 33.333 0.00 0.00 0.00 1.63
558 559 6.659242 AGGAAAAGCAAGAAAAATCTCGGATA 59.341 34.615 0.00 0.00 0.00 2.59
559 560 5.478332 AGGAAAAGCAAGAAAAATCTCGGAT 59.522 36.000 0.00 0.00 0.00 4.18
560 561 4.827284 AGGAAAAGCAAGAAAAATCTCGGA 59.173 37.500 0.00 0.00 0.00 4.55
561 562 5.126396 AGGAAAAGCAAGAAAAATCTCGG 57.874 39.130 0.00 0.00 0.00 4.63
562 563 8.748380 AAATAGGAAAAGCAAGAAAAATCTCG 57.252 30.769 0.00 0.00 0.00 4.04
639 640 7.823745 AAAACCATGATAGCTATTTCCGAAT 57.176 32.000 7.87 0.00 0.00 3.34
693 694 8.352137 TCCACATACATCTGATTCACAAAAAT 57.648 30.769 0.00 0.00 0.00 1.82
719 720 6.073980 TGAGCGAACTAACACACTAAAATGTC 60.074 38.462 0.00 0.00 0.00 3.06
722 723 7.435068 AATGAGCGAACTAACACACTAAAAT 57.565 32.000 0.00 0.00 0.00 1.82
783 791 6.855061 ACCCCTCCCTTCACATATATAAGAAA 59.145 38.462 0.00 0.00 0.00 2.52
793 801 2.897823 AGATACCCCTCCCTTCACAT 57.102 50.000 0.00 0.00 0.00 3.21
827 835 7.333921 AGAGAAGTCTGCTGATGAAAAATACTG 59.666 37.037 0.00 0.00 0.00 2.74
865 880 7.475840 GGAGTAGCATTTTCCACTTTCTTATG 58.524 38.462 0.00 0.00 0.00 1.90
874 894 0.373716 CGCGGAGTAGCATTTTCCAC 59.626 55.000 0.00 0.00 36.85 4.02
875 895 0.036765 ACGCGGAGTAGCATTTTCCA 60.037 50.000 12.47 0.00 36.85 3.53
876 896 0.651031 GACGCGGAGTAGCATTTTCC 59.349 55.000 12.47 0.00 36.85 3.13
877 897 0.651031 GGACGCGGAGTAGCATTTTC 59.349 55.000 12.47 0.00 36.85 2.29
878 898 0.036765 TGGACGCGGAGTAGCATTTT 60.037 50.000 12.47 0.00 36.85 1.82
879 899 0.036765 TTGGACGCGGAGTAGCATTT 60.037 50.000 12.47 0.00 36.85 2.32
880 900 0.036765 TTTGGACGCGGAGTAGCATT 60.037 50.000 12.47 0.00 36.85 3.56
900 920 4.754667 GCGGGAGGGTTGACGGTC 62.755 72.222 0.00 0.00 0.00 4.79
1524 1545 0.947660 CGGGTCATGATCTCGGCATG 60.948 60.000 5.82 0.00 43.39 4.06
1910 1932 5.289675 CGAATAGTTAAGGATGGATGCGATC 59.710 44.000 0.00 0.00 0.00 3.69
1963 1988 6.599356 GGAAACCCAAACCACAAAGTATAT 57.401 37.500 0.00 0.00 0.00 0.86
2239 2272 7.613022 TCTGCTAAATCTCAATCCAAATTCAGT 59.387 33.333 0.00 0.00 0.00 3.41
2466 2501 7.010367 GCAGTGAAGATCTTTTACTCTGAGATG 59.990 40.741 20.42 12.17 30.64 2.90
2467 2502 7.041107 GCAGTGAAGATCTTTTACTCTGAGAT 58.959 38.462 20.42 0.00 33.05 2.75
2910 2960 1.603456 ACGGTCATGCAAATCACACA 58.397 45.000 0.00 0.00 0.00 3.72
3167 3218 1.069906 CCGGAGAAAAGCTTGTTCACG 60.070 52.381 17.74 18.54 0.00 4.35
3186 3237 1.668237 GCGAGATTCTTCCTTTGCTCC 59.332 52.381 0.00 0.00 0.00 4.70
3195 3247 1.061276 GGTTCGCTTGCGAGATTCTTC 59.939 52.381 17.06 4.55 0.00 2.87
3205 3257 0.668535 AAAAGGAGTGGTTCGCTTGC 59.331 50.000 0.00 0.00 0.00 4.01
3210 3262 4.319177 AGAGAATCAAAAGGAGTGGTTCG 58.681 43.478 0.00 0.00 40.39 3.95
3704 3757 0.548031 GGAGGAGCATGGACATGGAA 59.452 55.000 13.63 0.00 39.16 3.53
3819 3872 3.056322 GGCGAGACCCAAAAGTAGACTAA 60.056 47.826 0.00 0.00 0.00 2.24
3871 3924 9.716531 CACCTACACAATCATATCATTCATACT 57.283 33.333 0.00 0.00 0.00 2.12
3872 3925 9.710900 TCACCTACACAATCATATCATTCATAC 57.289 33.333 0.00 0.00 0.00 2.39
4515 4583 1.135527 CGATACGTACCAAGGAAGGCA 59.864 52.381 0.00 0.00 0.00 4.75
4524 4592 2.717485 GGCGAGCGATACGTACCA 59.283 61.111 0.00 0.00 0.00 3.25
4674 4743 3.184541 GAGGTTGTCGCTAATCGCTTTA 58.815 45.455 0.00 0.00 38.27 1.85
4717 4797 1.959226 GGAAACGGCTTCGCAGTCA 60.959 57.895 0.00 0.00 35.69 3.41
4719 4799 1.302511 ATGGAAACGGCTTCGCAGT 60.303 52.632 0.00 0.00 38.82 4.40
4723 4803 0.953471 TGTCCATGGAAACGGCTTCG 60.953 55.000 18.20 0.00 34.56 3.79
4745 4825 4.997905 AATACTACTATTAGCGTCGCGA 57.002 40.909 12.30 3.71 0.00 5.87
4782 4865 1.267806 CTTCCATTGCATGATACCCGC 59.732 52.381 0.00 0.00 0.00 6.13
4797 4880 9.880157 GTACTAATAATCAGGTTAACACTTCCA 57.120 33.333 8.10 0.00 0.00 3.53
5660 5744 6.507023 CATATGCAAGTTCCAGGTAAAATCC 58.493 40.000 0.00 0.00 0.00 3.01
5816 5904 3.502920 CGGTATCTCGGATGTATTCAGC 58.497 50.000 0.00 0.00 0.00 4.26
5838 5926 1.131826 GGTATGTGTGCGCGTTGTC 59.868 57.895 8.43 0.00 0.00 3.18
5853 5946 4.919774 TCTTTGTATCTTGCCTTGGGTA 57.080 40.909 0.00 0.00 0.00 3.69
5877 5970 1.666872 GTGGTGTGTCGGTACCTGC 60.667 63.158 10.90 2.90 37.84 4.85
5882 5975 0.899717 GGTAGGGTGGTGTGTCGGTA 60.900 60.000 0.00 0.00 0.00 4.02
5898 5991 7.118680 GGTTCATTTCTCTATTGTTTGTCGGTA 59.881 37.037 0.00 0.00 0.00 4.02
5945 6038 1.841302 TTGGAGGCACCGCTTCTGAT 61.841 55.000 0.00 0.00 42.61 2.90
5970 6063 1.009222 CGGCTATCCACGGTCGTAC 60.009 63.158 0.00 0.00 0.00 3.67
6002 6095 1.468914 GGTGAAAACCTGATCTTCGCC 59.531 52.381 8.08 8.08 41.20 5.54
6267 6525 1.827789 GTTGTCTGGTTGCAGGGCA 60.828 57.895 0.00 0.00 36.47 5.36
6655 6913 1.978580 GGGATATGGGTTCCTCGATGT 59.021 52.381 0.00 0.00 33.53 3.06
6664 6923 0.030501 TGGTCGGAGGGATATGGGTT 60.031 55.000 0.00 0.00 0.00 4.11
6671 6930 2.066999 GGAGCTTGGTCGGAGGGAT 61.067 63.158 0.00 0.00 0.00 3.85
6672 6931 2.683933 GGAGCTTGGTCGGAGGGA 60.684 66.667 0.00 0.00 0.00 4.20
6696 6955 0.903454 TCTCCCCCTTTCCTCGTGTC 60.903 60.000 0.00 0.00 0.00 3.67
6754 7013 1.441729 CGGTCATGCCACCTATCGT 59.558 57.895 2.39 0.00 36.97 3.73
6767 7026 4.451150 GTGGCCTCGATGCGGTCA 62.451 66.667 3.32 0.00 32.85 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.