Multiple sequence alignment - TraesCS5D01G134000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G134000 chr5D 100.000 7661 0 0 396 8056 214081469 214089129 0.000000e+00 14148.0
1 TraesCS5D01G134000 chr5D 95.448 703 25 1 7354 8056 195565244 195565939 0.000000e+00 1114.0
2 TraesCS5D01G134000 chr5D 95.306 703 27 1 7354 8056 174995678 174994982 0.000000e+00 1110.0
3 TraesCS5D01G134000 chr5D 92.677 437 28 2 4010 4446 503805354 503805786 1.910000e-175 627.0
4 TraesCS5D01G134000 chr5D 90.074 272 19 3 4485 4754 503805782 503806047 5.980000e-91 346.0
5 TraesCS5D01G134000 chr5D 94.915 177 9 0 3751 3927 25040152 25039976 2.210000e-70 278.0
6 TraesCS5D01G134000 chr5D 100.000 117 0 0 1 117 214081074 214081190 4.900000e-52 217.0
7 TraesCS5D01G134000 chr5D 89.720 107 7 3 2835 2939 310705352 310705248 5.070000e-27 134.0
8 TraesCS5D01G134000 chr5D 100.000 28 0 0 5765 5792 214086579 214086552 1.500000e-02 52.8
9 TraesCS5D01G134000 chr5D 100.000 28 0 0 5479 5506 214086865 214086838 1.500000e-02 52.8
10 TraesCS5D01G134000 chr5B 95.455 1672 48 15 3961 5607 673737826 673739494 0.000000e+00 2641.0
11 TraesCS5D01G134000 chr5B 92.897 1788 66 22 5614 7355 228761210 228762982 0.000000e+00 2542.0
12 TraesCS5D01G134000 chr5B 93.189 1013 64 3 870 1879 228756077 228757087 0.000000e+00 1483.0
13 TraesCS5D01G134000 chr5B 79.689 1541 289 20 3956 5478 166597507 166595973 0.000000e+00 1090.0
14 TraesCS5D01G134000 chr5B 93.128 713 42 3 3065 3770 228760430 228761142 0.000000e+00 1038.0
15 TraesCS5D01G134000 chr5B 95.938 640 23 2 2232 2871 228757527 228758163 0.000000e+00 1035.0
16 TraesCS5D01G134000 chr5B 79.064 1538 293 26 3961 5478 548113158 548111630 0.000000e+00 1029.0
17 TraesCS5D01G134000 chr5B 94.133 375 18 4 1876 2246 228757123 228757497 1.170000e-157 568.0
18 TraesCS5D01G134000 chr5B 97.576 165 4 0 2907 3071 228758158 228758322 4.760000e-72 283.0
19 TraesCS5D01G134000 chr5B 95.480 177 5 3 3758 3934 123428082 123427909 6.160000e-71 279.0
20 TraesCS5D01G134000 chr5B 95.783 166 6 1 3759 3924 662913929 662914093 4.790000e-67 267.0
21 TraesCS5D01G134000 chr5B 90.580 138 9 4 724 861 228754679 228754812 6.420000e-41 180.0
22 TraesCS5D01G134000 chr5B 100.000 28 0 0 5479 5506 228761389 228761362 1.500000e-02 52.8
23 TraesCS5D01G134000 chr5A 96.090 1381 37 8 5607 6983 279562347 279563714 0.000000e+00 2235.0
24 TraesCS5D01G134000 chr5A 91.535 1394 84 22 500 1879 279559029 279560402 0.000000e+00 1890.0
25 TraesCS5D01G134000 chr5A 95.882 850 30 3 2916 3761 279561451 279562299 0.000000e+00 1371.0
26 TraesCS5D01G134000 chr5A 94.003 667 30 3 2180 2838 279560790 279561454 0.000000e+00 1002.0
27 TraesCS5D01G134000 chr5A 93.548 403 21 5 1876 2275 279560438 279560838 5.380000e-166 595.0
28 TraesCS5D01G134000 chr5A 87.540 313 21 9 7061 7355 279566573 279566885 5.980000e-91 346.0
29 TraesCS5D01G134000 chr5A 100.000 32 0 0 3922 3953 279562297 279562328 8.730000e-05 60.2
30 TraesCS5D01G134000 chr3A 85.825 1679 200 21 3961 5610 55525314 55523645 0.000000e+00 1748.0
31 TraesCS5D01G134000 chr3A 95.429 175 8 0 3759 3933 585605638 585605812 6.160000e-71 279.0
32 TraesCS5D01G134000 chr7D 96.307 704 20 1 7353 8056 322037948 322038645 0.000000e+00 1151.0
33 TraesCS5D01G134000 chr7D 95.531 179 8 0 3748 3926 459391913 459392091 3.680000e-73 287.0
34 TraesCS5D01G134000 chr2D 95.474 707 24 2 7351 8056 270314149 270314848 0.000000e+00 1122.0
35 TraesCS5D01G134000 chr2D 95.028 704 28 2 7354 8056 269653106 269653803 0.000000e+00 1099.0
36 TraesCS5D01G134000 chr2D 94.744 704 29 5 7354 8056 272073824 272073128 0.000000e+00 1088.0
37 TraesCS5D01G134000 chr2D 96.629 89 0 2 2832 2918 300888274 300888187 2.340000e-30 145.0
38 TraesCS5D01G134000 chr2D 94.624 93 2 2 2836 2925 534925550 534925458 3.030000e-29 141.0
39 TraesCS5D01G134000 chr6D 95.164 703 28 1 7354 8056 216303142 216303838 0.000000e+00 1105.0
40 TraesCS5D01G134000 chr6D 95.506 89 2 1 2835 2921 427344941 427344853 3.030000e-29 141.0
41 TraesCS5D01G134000 chr1D 95.170 704 23 4 7354 8056 124914488 124915181 0.000000e+00 1101.0
42 TraesCS5D01G134000 chr1D 96.491 171 6 0 3759 3929 178466306 178466476 4.760000e-72 283.0
43 TraesCS5D01G134000 chr3D 94.879 703 30 1 7354 8056 237622743 237623439 0.000000e+00 1094.0
44 TraesCS5D01G134000 chr3D 94.505 182 9 1 3751 3932 361805870 361805690 6.160000e-71 279.0
45 TraesCS5D01G134000 chr6B 78.740 1698 312 33 3956 5610 690208932 690207241 0.000000e+00 1090.0
46 TraesCS5D01G134000 chr6B 96.552 87 1 1 2835 2919 13827612 13827526 8.430000e-30 143.0
47 TraesCS5D01G134000 chr6B 87.302 126 11 5 2836 2957 472612060 472612184 1.090000e-28 139.0
48 TraesCS5D01G134000 chr2A 95.506 178 8 0 3748 3925 746757165 746756988 1.320000e-72 285.0
49 TraesCS5D01G134000 chr2A 95.556 90 1 2 2832 2919 377135049 377134961 3.030000e-29 141.0
50 TraesCS5D01G134000 chr4A 96.450 169 6 0 3759 3927 362068075 362067907 6.160000e-71 279.0
51 TraesCS5D01G134000 chr4D 92.000 100 6 1 2835 2932 324227847 324227748 1.090000e-28 139.0
52 TraesCS5D01G134000 chr7B 92.708 96 5 1 2833 2926 639796287 639796192 3.920000e-28 137.0
53 TraesCS5D01G134000 chr7A 95.294 85 4 0 3963 4047 598908824 598908740 1.410000e-27 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G134000 chr5D 214081074 214089129 8055 False 7182.500000 14148 100.000000 1 8056 2 chr5D.!!$F2 8055
1 TraesCS5D01G134000 chr5D 195565244 195565939 695 False 1114.000000 1114 95.448000 7354 8056 1 chr5D.!!$F1 702
2 TraesCS5D01G134000 chr5D 174994982 174995678 696 True 1110.000000 1110 95.306000 7354 8056 1 chr5D.!!$R2 702
3 TraesCS5D01G134000 chr5D 503805354 503806047 693 False 486.500000 627 91.375500 4010 4754 2 chr5D.!!$F3 744
4 TraesCS5D01G134000 chr5B 673737826 673739494 1668 False 2641.000000 2641 95.455000 3961 5607 1 chr5B.!!$F2 1646
5 TraesCS5D01G134000 chr5B 166595973 166597507 1534 True 1090.000000 1090 79.689000 3956 5478 1 chr5B.!!$R2 1522
6 TraesCS5D01G134000 chr5B 548111630 548113158 1528 True 1029.000000 1029 79.064000 3961 5478 1 chr5B.!!$R4 1517
7 TraesCS5D01G134000 chr5B 228754679 228762982 8303 False 1018.428571 2542 93.920143 724 7355 7 chr5B.!!$F3 6631
8 TraesCS5D01G134000 chr5A 279559029 279566885 7856 False 1071.314286 2235 94.085429 500 7355 7 chr5A.!!$F1 6855
9 TraesCS5D01G134000 chr3A 55523645 55525314 1669 True 1748.000000 1748 85.825000 3961 5610 1 chr3A.!!$R1 1649
10 TraesCS5D01G134000 chr7D 322037948 322038645 697 False 1151.000000 1151 96.307000 7353 8056 1 chr7D.!!$F1 703
11 TraesCS5D01G134000 chr2D 270314149 270314848 699 False 1122.000000 1122 95.474000 7351 8056 1 chr2D.!!$F2 705
12 TraesCS5D01G134000 chr2D 269653106 269653803 697 False 1099.000000 1099 95.028000 7354 8056 1 chr2D.!!$F1 702
13 TraesCS5D01G134000 chr2D 272073128 272073824 696 True 1088.000000 1088 94.744000 7354 8056 1 chr2D.!!$R1 702
14 TraesCS5D01G134000 chr6D 216303142 216303838 696 False 1105.000000 1105 95.164000 7354 8056 1 chr6D.!!$F1 702
15 TraesCS5D01G134000 chr1D 124914488 124915181 693 False 1101.000000 1101 95.170000 7354 8056 1 chr1D.!!$F1 702
16 TraesCS5D01G134000 chr3D 237622743 237623439 696 False 1094.000000 1094 94.879000 7354 8056 1 chr3D.!!$F1 702
17 TraesCS5D01G134000 chr6B 690207241 690208932 1691 True 1090.000000 1090 78.740000 3956 5610 1 chr6B.!!$R2 1654

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
430 431 0.036164 AGGTGTGTGTGTGTGTGTGT 59.964 50.000 0.00 0.0 0.00 3.72 F
460 461 0.107897 GGGTGTGTGTGTGTGTGAGA 60.108 55.000 0.00 0.0 0.00 3.27 F
595 596 0.178958 AAAAACCGGCACCACCCATA 60.179 50.000 0.00 0.0 33.26 2.74 F
597 598 0.395173 AAACCGGCACCACCCATATC 60.395 55.000 0.00 0.0 33.26 1.63 F
613 614 0.528017 TATCTGATCCCTCGCATCGC 59.472 55.000 0.00 0.0 0.00 4.58 F
667 668 0.741221 GTGCCTCCAAAGCTAGACCG 60.741 60.000 0.00 0.0 0.00 4.79 F
1558 2821 1.065418 GGAAGTCGTGGTGGATTGGAT 60.065 52.381 0.00 0.0 0.00 3.41 F
1912 3223 1.453633 AGGGAATGCCATATGCCTCT 58.546 50.000 0.00 0.0 40.16 3.69 F
3773 7265 1.302907 TACCTACTCCCTCCGTTCCT 58.697 55.000 0.00 0.0 0.00 3.36 F
5097 8602 0.107703 TGGAGTAAGGCCAAGATGCG 60.108 55.000 5.01 0.0 31.13 4.73 F
5969 9511 1.139058 TCAAGGCTCGATTCTTAGGCC 59.861 52.381 0.00 0.0 42.74 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1505 2768 1.144969 CGAACTGAAGCAAGCGGTAA 58.855 50.000 0.00 0.00 0.00 2.85 R
2443 3804 1.283321 GAGACCCCTTCAGCATCCTTT 59.717 52.381 0.00 0.00 0.00 3.11 R
2697 4066 7.547019 CCAGTTGTACTGCTCATATGTATATGG 59.453 40.741 10.96 4.69 44.63 2.74 R
2711 4080 1.602377 AGAAAACGCCAGTTGTACTGC 59.398 47.619 1.31 0.00 44.63 4.40 R
2733 4102 2.567615 GAGAGCCAGGAGGAACAGTTTA 59.432 50.000 0.00 0.00 36.89 2.01 R
2774 4143 0.463654 TTCACTTGCCTGTTGAGCGT 60.464 50.000 0.00 0.00 0.00 5.07 R
3537 7022 1.214673 AGGTCATCTGCAGCCATTGAT 59.785 47.619 9.47 0.00 0.00 2.57 R
3908 7400 1.192428 ACATGTACTCCCTCCGTTCC 58.808 55.000 0.00 0.00 0.00 3.62 R
5494 9000 0.103208 CTTTCGGGACATCTCCTCCG 59.897 60.000 0.00 0.00 43.42 4.63 R
6545 10092 0.322366 AGCCTGCAGAGAGGAAAAGC 60.322 55.000 17.39 6.49 34.69 3.51 R
7182 13516 0.530870 GCCGCCACAGGAGAGATTAC 60.531 60.000 0.00 0.00 0.00 1.89 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.358322 TGGGTCCCAAAGTCAAAGTC 57.642 50.000 8.65 0.00 0.00 3.01
21 22 1.850345 TGGGTCCCAAAGTCAAAGTCT 59.150 47.619 8.65 0.00 0.00 3.24
22 23 3.050089 TGGGTCCCAAAGTCAAAGTCTA 58.950 45.455 8.65 0.00 0.00 2.59
23 24 3.460340 TGGGTCCCAAAGTCAAAGTCTAA 59.540 43.478 8.65 0.00 0.00 2.10
24 25 3.819337 GGGTCCCAAAGTCAAAGTCTAAC 59.181 47.826 1.78 0.00 0.00 2.34
25 26 3.819337 GGTCCCAAAGTCAAAGTCTAACC 59.181 47.826 0.00 0.00 0.00 2.85
26 27 4.445879 GGTCCCAAAGTCAAAGTCTAACCT 60.446 45.833 0.00 0.00 0.00 3.50
27 28 5.131067 GTCCCAAAGTCAAAGTCTAACCTT 58.869 41.667 0.00 0.00 0.00 3.50
28 29 5.008712 GTCCCAAAGTCAAAGTCTAACCTTG 59.991 44.000 0.00 0.00 0.00 3.61
29 30 5.104277 TCCCAAAGTCAAAGTCTAACCTTGA 60.104 40.000 0.00 0.00 0.00 3.02
30 31 5.592688 CCCAAAGTCAAAGTCTAACCTTGAA 59.407 40.000 0.00 0.00 0.00 2.69
31 32 6.265422 CCCAAAGTCAAAGTCTAACCTTGAAT 59.735 38.462 0.00 0.00 0.00 2.57
32 33 7.363431 CCAAAGTCAAAGTCTAACCTTGAATC 58.637 38.462 0.00 0.00 0.00 2.52
33 34 6.787085 AAGTCAAAGTCTAACCTTGAATCG 57.213 37.500 0.00 0.00 0.00 3.34
34 35 6.097915 AGTCAAAGTCTAACCTTGAATCGA 57.902 37.500 0.00 0.00 0.00 3.59
35 36 6.522054 AGTCAAAGTCTAACCTTGAATCGAA 58.478 36.000 0.00 0.00 0.00 3.71
36 37 7.162082 AGTCAAAGTCTAACCTTGAATCGAAT 58.838 34.615 0.00 0.00 0.00 3.34
37 38 7.118390 AGTCAAAGTCTAACCTTGAATCGAATG 59.882 37.037 0.00 0.00 0.00 2.67
38 39 5.803020 AAGTCTAACCTTGAATCGAATGC 57.197 39.130 0.00 0.00 0.00 3.56
39 40 3.865745 AGTCTAACCTTGAATCGAATGCG 59.134 43.478 0.00 0.00 39.35 4.73
40 41 3.617263 GTCTAACCTTGAATCGAATGCGT 59.383 43.478 0.00 0.00 38.98 5.24
41 42 2.900122 AACCTTGAATCGAATGCGTG 57.100 45.000 0.00 0.00 38.98 5.34
42 43 1.808411 ACCTTGAATCGAATGCGTGT 58.192 45.000 0.00 0.00 38.98 4.49
43 44 2.967362 ACCTTGAATCGAATGCGTGTA 58.033 42.857 0.00 0.00 38.98 2.90
44 45 3.331150 ACCTTGAATCGAATGCGTGTAA 58.669 40.909 0.00 0.00 38.98 2.41
45 46 3.938963 ACCTTGAATCGAATGCGTGTAAT 59.061 39.130 0.00 0.00 38.98 1.89
46 47 4.201812 ACCTTGAATCGAATGCGTGTAATG 60.202 41.667 0.00 0.00 38.98 1.90
47 48 4.201812 CCTTGAATCGAATGCGTGTAATGT 60.202 41.667 0.00 0.00 38.98 2.71
48 49 5.006261 CCTTGAATCGAATGCGTGTAATGTA 59.994 40.000 0.00 0.00 38.98 2.29
49 50 5.383984 TGAATCGAATGCGTGTAATGTAC 57.616 39.130 0.00 0.00 38.98 2.90
50 51 4.865365 TGAATCGAATGCGTGTAATGTACA 59.135 37.500 0.00 0.00 38.98 2.90
51 52 5.348997 TGAATCGAATGCGTGTAATGTACAA 59.651 36.000 0.00 0.00 40.93 2.41
52 53 5.788055 ATCGAATGCGTGTAATGTACAAA 57.212 34.783 0.00 0.00 40.93 2.83
53 54 4.948588 TCGAATGCGTGTAATGTACAAAC 58.051 39.130 0.00 1.92 40.93 2.93
54 55 4.448060 TCGAATGCGTGTAATGTACAAACA 59.552 37.500 0.00 4.89 40.93 2.83
55 56 5.050295 TCGAATGCGTGTAATGTACAAACAA 60.050 36.000 14.07 2.55 40.93 2.83
56 57 5.792962 CGAATGCGTGTAATGTACAAACAAT 59.207 36.000 14.07 4.45 40.93 2.71
57 58 6.236915 CGAATGCGTGTAATGTACAAACAATG 60.237 38.462 14.07 11.36 40.93 2.82
58 59 5.674933 TGCGTGTAATGTACAAACAATGA 57.325 34.783 14.07 1.53 40.93 2.57
59 60 6.247727 TGCGTGTAATGTACAAACAATGAT 57.752 33.333 14.07 0.00 40.93 2.45
60 61 7.365840 TGCGTGTAATGTACAAACAATGATA 57.634 32.000 14.07 3.67 40.93 2.15
61 62 7.807680 TGCGTGTAATGTACAAACAATGATAA 58.192 30.769 14.07 0.00 40.93 1.75
62 63 8.290325 TGCGTGTAATGTACAAACAATGATAAA 58.710 29.630 14.07 0.00 40.93 1.40
63 64 9.284594 GCGTGTAATGTACAAACAATGATAAAT 57.715 29.630 14.07 0.00 40.93 1.40
69 70 8.820628 ATGTACAAACAATGATAAATCGAACG 57.179 30.769 0.00 0.00 39.58 3.95
70 71 6.739100 TGTACAAACAATGATAAATCGAACGC 59.261 34.615 0.00 0.00 30.91 4.84
71 72 4.786068 ACAAACAATGATAAATCGAACGCG 59.214 37.500 3.53 3.53 39.35 6.01
72 73 3.585748 ACAATGATAAATCGAACGCGG 57.414 42.857 12.47 0.00 38.28 6.46
73 74 2.286184 ACAATGATAAATCGAACGCGGC 60.286 45.455 12.47 0.04 38.28 6.53
74 75 0.865769 ATGATAAATCGAACGCGGCC 59.134 50.000 12.47 0.00 38.28 6.13
75 76 1.200839 GATAAATCGAACGCGGCCG 59.799 57.895 24.05 24.05 38.28 6.13
76 77 2.743871 GATAAATCGAACGCGGCCGC 62.744 60.000 39.82 39.82 38.22 6.53
87 88 3.876198 CGGCCGCGGGAAATTGAG 61.876 66.667 29.38 0.00 0.00 3.02
88 89 3.518068 GGCCGCGGGAAATTGAGG 61.518 66.667 29.38 0.00 0.00 3.86
89 90 4.193334 GCCGCGGGAAATTGAGGC 62.193 66.667 29.38 3.75 43.69 4.70
90 91 2.438434 CCGCGGGAAATTGAGGCT 60.438 61.111 20.10 0.00 0.00 4.58
91 92 1.153249 CCGCGGGAAATTGAGGCTA 60.153 57.895 20.10 0.00 0.00 3.93
92 93 1.436983 CCGCGGGAAATTGAGGCTAC 61.437 60.000 20.10 0.00 0.00 3.58
93 94 0.742990 CGCGGGAAATTGAGGCTACA 60.743 55.000 0.00 0.00 0.00 2.74
94 95 1.017387 GCGGGAAATTGAGGCTACAG 58.983 55.000 0.00 0.00 0.00 2.74
95 96 1.406887 GCGGGAAATTGAGGCTACAGA 60.407 52.381 0.00 0.00 0.00 3.41
96 97 2.555199 CGGGAAATTGAGGCTACAGAG 58.445 52.381 0.00 0.00 0.00 3.35
97 98 2.168521 CGGGAAATTGAGGCTACAGAGA 59.831 50.000 0.00 0.00 0.00 3.10
98 99 3.739519 CGGGAAATTGAGGCTACAGAGAG 60.740 52.174 0.00 0.00 0.00 3.20
99 100 3.432890 GGGAAATTGAGGCTACAGAGAGG 60.433 52.174 0.00 0.00 0.00 3.69
100 101 3.452627 GGAAATTGAGGCTACAGAGAGGA 59.547 47.826 0.00 0.00 0.00 3.71
101 102 4.438148 GAAATTGAGGCTACAGAGAGGAC 58.562 47.826 0.00 0.00 0.00 3.85
102 103 2.604912 TTGAGGCTACAGAGAGGACA 57.395 50.000 0.00 0.00 0.00 4.02
103 104 2.836636 TGAGGCTACAGAGAGGACAT 57.163 50.000 0.00 0.00 0.00 3.06
104 105 3.953542 TGAGGCTACAGAGAGGACATA 57.046 47.619 0.00 0.00 0.00 2.29
105 106 3.826524 TGAGGCTACAGAGAGGACATAG 58.173 50.000 0.00 0.00 0.00 2.23
106 107 3.153919 GAGGCTACAGAGAGGACATAGG 58.846 54.545 0.00 0.00 0.00 2.57
107 108 2.158385 AGGCTACAGAGAGGACATAGGG 60.158 54.545 0.00 0.00 0.00 3.53
108 109 1.616374 GCTACAGAGAGGACATAGGGC 59.384 57.143 0.00 0.00 0.00 5.19
109 110 2.950781 CTACAGAGAGGACATAGGGCA 58.049 52.381 0.00 0.00 0.00 5.36
110 111 2.485966 ACAGAGAGGACATAGGGCAT 57.514 50.000 0.00 0.00 0.00 4.40
111 112 2.769209 ACAGAGAGGACATAGGGCATT 58.231 47.619 0.00 0.00 0.00 3.56
112 113 3.928754 ACAGAGAGGACATAGGGCATTA 58.071 45.455 0.00 0.00 0.00 1.90
113 114 3.643792 ACAGAGAGGACATAGGGCATTAC 59.356 47.826 0.00 0.00 0.00 1.89
114 115 3.007398 CAGAGAGGACATAGGGCATTACC 59.993 52.174 0.00 0.00 37.93 2.85
115 116 1.971357 AGAGGACATAGGGCATTACCG 59.029 52.381 0.00 0.00 40.62 4.02
116 117 1.692519 GAGGACATAGGGCATTACCGT 59.307 52.381 0.00 0.00 40.62 4.83
412 413 2.434884 ATCTTGTGGTCGCCGCAG 60.435 61.111 11.09 7.16 45.18 5.18
425 426 2.708865 CGCAGGTGTGTGTGTGTG 59.291 61.111 0.00 0.00 0.00 3.82
426 427 2.106074 CGCAGGTGTGTGTGTGTGT 61.106 57.895 0.00 0.00 0.00 3.72
427 428 1.429021 GCAGGTGTGTGTGTGTGTG 59.571 57.895 0.00 0.00 0.00 3.82
428 429 1.305219 GCAGGTGTGTGTGTGTGTGT 61.305 55.000 0.00 0.00 0.00 3.72
429 430 0.447406 CAGGTGTGTGTGTGTGTGTG 59.553 55.000 0.00 0.00 0.00 3.82
430 431 0.036164 AGGTGTGTGTGTGTGTGTGT 59.964 50.000 0.00 0.00 0.00 3.72
431 432 0.167908 GGTGTGTGTGTGTGTGTGTG 59.832 55.000 0.00 0.00 0.00 3.82
432 433 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
433 434 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
434 435 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
435 436 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
436 437 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
437 438 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
438 439 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
439 440 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
440 441 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
441 442 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
442 443 0.167908 GTGTGTGTGTGTGTGTGTGG 59.832 55.000 0.00 0.00 0.00 4.17
443 444 0.957888 TGTGTGTGTGTGTGTGTGGG 60.958 55.000 0.00 0.00 0.00 4.61
444 445 0.958382 GTGTGTGTGTGTGTGTGGGT 60.958 55.000 0.00 0.00 0.00 4.51
445 446 0.957888 TGTGTGTGTGTGTGTGGGTG 60.958 55.000 0.00 0.00 0.00 4.61
446 447 0.958382 GTGTGTGTGTGTGTGGGTGT 60.958 55.000 0.00 0.00 0.00 4.16
447 448 0.957888 TGTGTGTGTGTGTGGGTGTG 60.958 55.000 0.00 0.00 0.00 3.82
448 449 0.958382 GTGTGTGTGTGTGGGTGTGT 60.958 55.000 0.00 0.00 0.00 3.72
449 450 0.957888 TGTGTGTGTGTGGGTGTGTG 60.958 55.000 0.00 0.00 0.00 3.82
450 451 0.958382 GTGTGTGTGTGGGTGTGTGT 60.958 55.000 0.00 0.00 0.00 3.72
451 452 0.957888 TGTGTGTGTGGGTGTGTGTG 60.958 55.000 0.00 0.00 0.00 3.82
452 453 0.958382 GTGTGTGTGGGTGTGTGTGT 60.958 55.000 0.00 0.00 0.00 3.72
453 454 0.957888 TGTGTGTGGGTGTGTGTGTG 60.958 55.000 0.00 0.00 0.00 3.82
454 455 0.958382 GTGTGTGGGTGTGTGTGTGT 60.958 55.000 0.00 0.00 0.00 3.72
455 456 0.957888 TGTGTGGGTGTGTGTGTGTG 60.958 55.000 0.00 0.00 0.00 3.82
456 457 0.958382 GTGTGGGTGTGTGTGTGTGT 60.958 55.000 0.00 0.00 0.00 3.72
457 458 0.957888 TGTGGGTGTGTGTGTGTGTG 60.958 55.000 0.00 0.00 0.00 3.82
458 459 0.675208 GTGGGTGTGTGTGTGTGTGA 60.675 55.000 0.00 0.00 0.00 3.58
459 460 0.392327 TGGGTGTGTGTGTGTGTGAG 60.392 55.000 0.00 0.00 0.00 3.51
460 461 0.107897 GGGTGTGTGTGTGTGTGAGA 60.108 55.000 0.00 0.00 0.00 3.27
461 462 1.290203 GGTGTGTGTGTGTGTGAGAG 58.710 55.000 0.00 0.00 0.00 3.20
462 463 1.134818 GGTGTGTGTGTGTGTGAGAGA 60.135 52.381 0.00 0.00 0.00 3.10
463 464 2.196749 GTGTGTGTGTGTGTGAGAGAG 58.803 52.381 0.00 0.00 0.00 3.20
464 465 2.099405 TGTGTGTGTGTGTGAGAGAGA 58.901 47.619 0.00 0.00 0.00 3.10
465 466 2.099756 TGTGTGTGTGTGTGAGAGAGAG 59.900 50.000 0.00 0.00 0.00 3.20
466 467 2.359214 GTGTGTGTGTGTGAGAGAGAGA 59.641 50.000 0.00 0.00 0.00 3.10
467 468 2.620585 TGTGTGTGTGTGAGAGAGAGAG 59.379 50.000 0.00 0.00 0.00 3.20
468 469 2.881513 GTGTGTGTGTGAGAGAGAGAGA 59.118 50.000 0.00 0.00 0.00 3.10
469 470 3.058293 GTGTGTGTGTGAGAGAGAGAGAG 60.058 52.174 0.00 0.00 0.00 3.20
470 471 3.181450 TGTGTGTGTGAGAGAGAGAGAGA 60.181 47.826 0.00 0.00 0.00 3.10
471 472 3.436704 GTGTGTGTGAGAGAGAGAGAGAG 59.563 52.174 0.00 0.00 0.00 3.20
472 473 3.326297 TGTGTGTGAGAGAGAGAGAGAGA 59.674 47.826 0.00 0.00 0.00 3.10
473 474 3.935203 GTGTGTGAGAGAGAGAGAGAGAG 59.065 52.174 0.00 0.00 0.00 3.20
474 475 3.837731 TGTGTGAGAGAGAGAGAGAGAGA 59.162 47.826 0.00 0.00 0.00 3.10
475 476 4.081476 TGTGTGAGAGAGAGAGAGAGAGAG 60.081 50.000 0.00 0.00 0.00 3.20
476 477 4.160439 GTGTGAGAGAGAGAGAGAGAGAGA 59.840 50.000 0.00 0.00 0.00 3.10
477 478 4.403752 TGTGAGAGAGAGAGAGAGAGAGAG 59.596 50.000 0.00 0.00 0.00 3.20
478 479 4.646945 GTGAGAGAGAGAGAGAGAGAGAGA 59.353 50.000 0.00 0.00 0.00 3.10
479 480 4.892345 TGAGAGAGAGAGAGAGAGAGAGAG 59.108 50.000 0.00 0.00 0.00 3.20
480 481 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
481 482 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
482 483 4.222336 AGAGAGAGAGAGAGAGAGAGAGG 58.778 52.174 0.00 0.00 0.00 3.69
483 484 3.964031 GAGAGAGAGAGAGAGAGAGAGGT 59.036 52.174 0.00 0.00 0.00 3.85
484 485 3.708631 AGAGAGAGAGAGAGAGAGAGGTG 59.291 52.174 0.00 0.00 0.00 4.00
485 486 3.706594 GAGAGAGAGAGAGAGAGAGGTGA 59.293 52.174 0.00 0.00 0.00 4.02
486 487 4.104086 AGAGAGAGAGAGAGAGAGGTGAA 58.896 47.826 0.00 0.00 0.00 3.18
487 488 4.536090 AGAGAGAGAGAGAGAGAGGTGAAA 59.464 45.833 0.00 0.00 0.00 2.69
488 489 5.014123 AGAGAGAGAGAGAGAGAGGTGAAAA 59.986 44.000 0.00 0.00 0.00 2.29
489 490 5.640147 AGAGAGAGAGAGAGAGGTGAAAAA 58.360 41.667 0.00 0.00 0.00 1.94
490 491 5.711976 AGAGAGAGAGAGAGAGGTGAAAAAG 59.288 44.000 0.00 0.00 0.00 2.27
491 492 4.772100 AGAGAGAGAGAGAGGTGAAAAAGG 59.228 45.833 0.00 0.00 0.00 3.11
492 493 3.837731 AGAGAGAGAGAGGTGAAAAAGGG 59.162 47.826 0.00 0.00 0.00 3.95
493 494 2.909662 AGAGAGAGAGGTGAAAAAGGGG 59.090 50.000 0.00 0.00 0.00 4.79
494 495 2.640332 GAGAGAGAGGTGAAAAAGGGGT 59.360 50.000 0.00 0.00 0.00 4.95
495 496 3.838903 GAGAGAGAGGTGAAAAAGGGGTA 59.161 47.826 0.00 0.00 0.00 3.69
496 497 4.240323 AGAGAGAGGTGAAAAAGGGGTAA 58.760 43.478 0.00 0.00 0.00 2.85
497 498 4.287326 AGAGAGAGGTGAAAAAGGGGTAAG 59.713 45.833 0.00 0.00 0.00 2.34
498 499 4.240323 AGAGAGGTGAAAAAGGGGTAAGA 58.760 43.478 0.00 0.00 0.00 2.10
501 502 3.329814 GAGGTGAAAAAGGGGTAAGAGGA 59.670 47.826 0.00 0.00 0.00 3.71
519 520 1.359459 GAGTTAAGGCGCCACTTCGG 61.359 60.000 31.54 0.00 38.11 4.30
520 521 2.046700 TTAAGGCGCCACTTCGGG 60.047 61.111 31.54 0.00 34.06 5.14
551 552 4.980805 TCTCCCCGCACGTGCAAC 62.981 66.667 37.03 11.41 42.21 4.17
557 558 3.414700 CGCACGTGCAACCTCCTC 61.415 66.667 37.03 7.62 42.21 3.71
565 566 1.379044 GCAACCTCCTCCACCCATG 60.379 63.158 0.00 0.00 0.00 3.66
566 567 2.078452 CAACCTCCTCCACCCATGT 58.922 57.895 0.00 0.00 0.00 3.21
575 576 5.124036 TCCTCCACCCATGTATTTTTAGG 57.876 43.478 0.00 0.00 0.00 2.69
579 580 6.439058 CCTCCACCCATGTATTTTTAGGAAAA 59.561 38.462 0.00 0.00 38.96 2.29
584 585 6.103330 CCCATGTATTTTTAGGAAAAACCGG 58.897 40.000 0.00 0.00 42.57 5.28
590 591 1.320507 TTAGGAAAAACCGGCACCAC 58.679 50.000 0.00 0.00 44.74 4.16
591 592 0.537828 TAGGAAAAACCGGCACCACC 60.538 55.000 0.00 0.00 44.74 4.61
592 593 2.732016 GAAAAACCGGCACCACCC 59.268 61.111 0.00 0.00 33.26 4.61
594 595 1.458588 AAAAACCGGCACCACCCAT 60.459 52.632 0.00 0.00 33.26 4.00
595 596 0.178958 AAAAACCGGCACCACCCATA 60.179 50.000 0.00 0.00 33.26 2.74
597 598 0.395173 AAACCGGCACCACCCATATC 60.395 55.000 0.00 0.00 33.26 1.63
599 600 1.227943 CCGGCACCACCCATATCTG 60.228 63.158 0.00 0.00 33.26 2.90
603 604 1.271597 GGCACCACCCATATCTGATCC 60.272 57.143 0.00 0.00 0.00 3.36
605 606 2.342659 CACCACCCATATCTGATCCCT 58.657 52.381 0.00 0.00 0.00 4.20
606 607 2.304180 CACCACCCATATCTGATCCCTC 59.696 54.545 0.00 0.00 0.00 4.30
608 609 1.066573 CACCCATATCTGATCCCTCGC 60.067 57.143 0.00 0.00 0.00 5.03
609 610 1.269958 CCCATATCTGATCCCTCGCA 58.730 55.000 0.00 0.00 0.00 5.10
612 613 2.480932 CCATATCTGATCCCTCGCATCG 60.481 54.545 0.00 0.00 0.00 3.84
613 614 0.528017 TATCTGATCCCTCGCATCGC 59.472 55.000 0.00 0.00 0.00 4.58
614 615 2.164865 ATCTGATCCCTCGCATCGCC 62.165 60.000 0.00 0.00 0.00 5.54
615 616 4.284860 TGATCCCTCGCATCGCCG 62.285 66.667 0.00 0.00 0.00 6.46
625 626 4.899239 CATCGCCGGGCCTGACTC 62.899 72.222 15.09 0.30 0.00 3.36
654 655 2.520904 GCTGATTCGAGCGTGCCTC 61.521 63.158 0.00 0.00 37.22 4.70
659 660 1.021390 ATTCGAGCGTGCCTCCAAAG 61.021 55.000 0.00 0.00 37.27 2.77
660 661 3.793144 CGAGCGTGCCTCCAAAGC 61.793 66.667 0.00 0.00 37.27 3.51
661 662 2.359230 GAGCGTGCCTCCAAAGCT 60.359 61.111 0.00 0.00 39.10 3.74
663 664 1.078848 AGCGTGCCTCCAAAGCTAG 60.079 57.895 0.00 0.00 36.06 3.42
667 668 0.741221 GTGCCTCCAAAGCTAGACCG 60.741 60.000 0.00 0.00 0.00 4.79
668 669 1.153349 GCCTCCAAAGCTAGACCGG 60.153 63.158 0.00 0.00 0.00 5.28
669 670 1.614241 GCCTCCAAAGCTAGACCGGA 61.614 60.000 9.46 0.00 0.00 5.14
711 712 5.104374 GTCATGCAGACCCAACAATATTTG 58.896 41.667 0.00 0.00 41.56 2.32
713 714 2.896044 TGCAGACCCAACAATATTTGCA 59.104 40.909 3.64 3.64 37.91 4.08
717 718 3.894427 AGACCCAACAATATTTGCACACA 59.106 39.130 0.00 0.00 0.00 3.72
737 738 1.981256 ATCAAACGTGCCTCCAAAGT 58.019 45.000 0.00 0.00 0.00 2.66
745 746 2.031870 GTGCCTCCAAAGTCAAACCTT 58.968 47.619 0.00 0.00 0.00 3.50
746 747 2.034685 GTGCCTCCAAAGTCAAACCTTC 59.965 50.000 0.00 0.00 0.00 3.46
868 2131 2.599659 GAAGGAAAAGAAATGCCGCTG 58.400 47.619 0.00 0.00 0.00 5.18
1093 2356 1.429463 CAGGTACCACAGCTTCGAAC 58.571 55.000 15.94 0.00 30.72 3.95
1097 2360 2.775032 TACCACAGCTTCGAACCGCC 62.775 60.000 5.82 0.00 0.00 6.13
1139 2402 1.532794 TTCACCCCCGCAGCAATTT 60.533 52.632 0.00 0.00 0.00 1.82
1152 2415 1.917273 GCAATTTGCGAGCATCATGT 58.083 45.000 5.49 0.00 31.71 3.21
1241 2504 2.881389 CACTTCTCCTCGCTCGCT 59.119 61.111 0.00 0.00 0.00 4.93
1305 2568 4.299547 TTGTGAGCTCGCAGCCGT 62.300 61.111 27.47 0.00 43.77 5.68
1367 2630 1.812571 CCGTTTTCTGATGGGAAGTGG 59.187 52.381 0.00 0.00 0.00 4.00
1370 2633 3.756117 GTTTTCTGATGGGAAGTGGTCT 58.244 45.455 0.00 0.00 0.00 3.85
1377 2640 6.385443 TCTGATGGGAAGTGGTCTATCTTAT 58.615 40.000 0.00 0.00 0.00 1.73
1558 2821 1.065418 GGAAGTCGTGGTGGATTGGAT 60.065 52.381 0.00 0.00 0.00 3.41
1568 2831 6.659668 TCGTGGTGGATTGGATAAATTTGTTA 59.340 34.615 0.00 0.00 0.00 2.41
1620 2890 8.129496 ACAAGTTAAAAGAAAAGGGAGAAACA 57.871 30.769 0.00 0.00 0.00 2.83
1704 2976 4.992381 AAGTTGCTATCTTGTCGTTGTC 57.008 40.909 0.00 0.00 0.00 3.18
1706 2978 2.717580 TGCTATCTTGTCGTTGTCGT 57.282 45.000 0.00 0.00 38.33 4.34
1718 2990 4.206088 GTCGTTGTCGTTGGTGTTTTATC 58.794 43.478 0.00 0.00 38.33 1.75
1728 3000 5.788531 CGTTGGTGTTTTATCGAAACTGATC 59.211 40.000 0.00 0.00 46.25 2.92
1729 3001 6.565060 CGTTGGTGTTTTATCGAAACTGATCA 60.565 38.462 0.00 0.00 46.25 2.92
1738 3010 8.786826 TTTATCGAAACTGATCACTATTGGTT 57.213 30.769 0.00 0.00 0.00 3.67
1816 3088 7.117812 CGCATAAACCTTAAGTCTTCAGAAAGA 59.882 37.037 0.97 0.00 39.22 2.52
1817 3089 8.784043 GCATAAACCTTAAGTCTTCAGAAAGAA 58.216 33.333 0.97 0.00 43.04 2.52
1908 3219 2.205022 TGCTAGGGAATGCCATATGC 57.795 50.000 0.00 0.00 41.77 3.14
1911 3222 2.943199 GCTAGGGAATGCCATATGCCTC 60.943 54.545 0.00 0.00 38.46 4.70
1912 3223 1.453633 AGGGAATGCCATATGCCTCT 58.546 50.000 0.00 0.00 40.16 3.69
1913 3224 2.636005 AGGGAATGCCATATGCCTCTA 58.364 47.619 0.00 0.00 40.16 2.43
1914 3225 2.575279 AGGGAATGCCATATGCCTCTAG 59.425 50.000 0.00 0.00 40.16 2.43
1915 3226 2.356535 GGGAATGCCATATGCCTCTAGG 60.357 54.545 0.00 0.00 40.16 3.02
2120 3434 4.211374 GTCGGTATGTCAGTTGCCAATATC 59.789 45.833 0.00 0.00 0.00 1.63
2184 3498 5.482006 AGCTGCCACTTCCAAATATTTTTC 58.518 37.500 0.00 0.00 0.00 2.29
2185 3499 5.011943 AGCTGCCACTTCCAAATATTTTTCA 59.988 36.000 0.00 0.00 0.00 2.69
2186 3500 5.120674 GCTGCCACTTCCAAATATTTTTCAC 59.879 40.000 0.00 0.00 0.00 3.18
2197 3512 9.513906 TCCAAATATTTTTCACAGTATCTGTCA 57.486 29.630 0.00 0.00 43.43 3.58
2267 3627 7.056635 CCTTGGATATTTGTATTCAGGACTGT 58.943 38.462 0.00 0.00 0.00 3.55
2300 3660 2.991866 GACAAACCACTTACTCCTACGC 59.008 50.000 0.00 0.00 0.00 4.42
2424 3785 7.275888 ACAAGAGTACATTTGAAGCATTTCA 57.724 32.000 14.09 0.00 41.44 2.69
2443 3804 3.734463 TCACAACTCTGCGGTATTTTCA 58.266 40.909 0.00 0.00 0.00 2.69
2551 3912 4.479158 TCCTTGGAAGTTTGTTAATGCCT 58.521 39.130 0.00 0.00 0.00 4.75
2646 4007 5.724328 TGACAGAAGTGTGCTCCTATTTAG 58.276 41.667 0.00 0.00 36.88 1.85
2697 4066 7.551035 AGTCAAATATGATCTTGCTTGAGTC 57.449 36.000 0.00 0.00 38.01 3.36
2711 4080 8.309656 TCTTGCTTGAGTCCATATACATATGAG 58.690 37.037 10.38 1.29 42.05 2.90
2733 4102 3.488553 GCAGTACAACTGGCGTTTTCTTT 60.489 43.478 8.99 0.00 46.01 2.52
2774 4143 6.032956 TCTCTAATTCGCCTTTTACTGACA 57.967 37.500 0.00 0.00 0.00 3.58
2776 4145 3.806316 AATTCGCCTTTTACTGACACG 57.194 42.857 0.00 0.00 0.00 4.49
3114 6597 9.365906 TCTCAGCTCTCTATCTTTCTCAAATAT 57.634 33.333 0.00 0.00 0.00 1.28
3140 6625 2.236893 TGGTGCTGATCATACTTGAGCA 59.763 45.455 0.00 0.00 45.55 4.26
3141 6626 3.273434 GGTGCTGATCATACTTGAGCAA 58.727 45.455 5.25 0.00 46.83 3.91
3164 6649 5.786264 ACGTACACTAGGCTTATATTGCT 57.214 39.130 0.00 0.00 0.00 3.91
3421 6906 4.099266 ACTGCAACACATTGTTAACATGGT 59.901 37.500 9.56 7.93 38.77 3.55
3440 6925 3.134458 GGTAACCAGCATATCAGACAGC 58.866 50.000 0.00 0.00 0.00 4.40
3534 7019 3.374764 TGGCTACTCTGCTGGAATAAGA 58.625 45.455 0.00 0.00 0.00 2.10
3537 7022 4.039730 GGCTACTCTGCTGGAATAAGATGA 59.960 45.833 0.00 0.00 0.00 2.92
3615 7100 2.037251 GACCTGTCAGCCTGTACAAGAA 59.963 50.000 0.00 0.00 0.00 2.52
3697 7184 3.201290 AGCGAGCCTAGAAACATCATTG 58.799 45.455 0.00 0.00 0.00 2.82
3716 7205 3.943671 TGTTATCCCACCCCATTAGTG 57.056 47.619 0.00 0.00 34.91 2.74
3727 7216 4.103153 CACCCCATTAGTGATCTACCACAT 59.897 45.833 0.00 0.00 39.42 3.21
3770 7262 3.463048 TTCTTACCTACTCCCTCCGTT 57.537 47.619 0.00 0.00 0.00 4.44
3771 7263 3.010200 TCTTACCTACTCCCTCCGTTC 57.990 52.381 0.00 0.00 0.00 3.95
3773 7265 1.302907 TACCTACTCCCTCCGTTCCT 58.697 55.000 0.00 0.00 0.00 3.36
3774 7266 1.302907 ACCTACTCCCTCCGTTCCTA 58.697 55.000 0.00 0.00 0.00 2.94
3780 7272 5.543020 CCTACTCCCTCCGTTCCTAAATATT 59.457 44.000 0.00 0.00 0.00 1.28
3781 7273 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
3783 7275 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
3785 7277 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
3788 7280 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
3790 7282 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
3792 7284 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
3805 7297 9.573166 TTTGTCTTTCTAGAGATTTCAAATGGA 57.427 29.630 0.00 0.00 0.00 3.41
3806 7298 8.553459 TGTCTTTCTAGAGATTTCAAATGGAC 57.447 34.615 0.00 0.00 0.00 4.02
3807 7299 8.378565 TGTCTTTCTAGAGATTTCAAATGGACT 58.621 33.333 0.00 0.00 0.00 3.85
3808 7300 9.877178 GTCTTTCTAGAGATTTCAAATGGACTA 57.123 33.333 0.00 0.00 0.00 2.59
3809 7301 9.877178 TCTTTCTAGAGATTTCAAATGGACTAC 57.123 33.333 0.00 0.00 0.00 2.73
3810 7302 9.103861 CTTTCTAGAGATTTCAAATGGACTACC 57.896 37.037 0.00 0.00 0.00 3.18
3823 7315 3.900971 TGGACTACCACATACGGATGTA 58.099 45.455 14.23 0.00 44.82 2.29
3824 7316 4.476297 TGGACTACCACATACGGATGTAT 58.524 43.478 14.23 7.46 44.82 2.29
3825 7317 5.633117 TGGACTACCACATACGGATGTATA 58.367 41.667 14.23 8.27 44.82 1.47
3826 7318 6.250711 TGGACTACCACATACGGATGTATAT 58.749 40.000 14.23 4.37 44.82 0.86
3827 7319 7.404481 TGGACTACCACATACGGATGTATATA 58.596 38.462 14.23 5.36 44.82 0.86
3828 7320 7.555195 TGGACTACCACATACGGATGTATATAG 59.445 40.741 14.23 16.35 44.82 1.31
3829 7321 7.772292 GGACTACCACATACGGATGTATATAGA 59.228 40.741 22.62 5.04 44.82 1.98
3830 7322 8.503458 ACTACCACATACGGATGTATATAGAC 57.497 38.462 22.62 0.00 44.82 2.59
3831 7323 8.105197 ACTACCACATACGGATGTATATAGACA 58.895 37.037 22.62 2.07 44.82 3.41
3832 7324 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
3834 7326 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
3861 7353 6.170675 AGAGTGTAGATTCATTCGTTTTGC 57.829 37.500 0.00 0.00 0.00 3.68
3862 7354 5.934625 AGAGTGTAGATTCATTCGTTTTGCT 59.065 36.000 0.00 0.00 0.00 3.91
3863 7355 6.091441 AGAGTGTAGATTCATTCGTTTTGCTC 59.909 38.462 0.00 0.00 0.00 4.26
3864 7356 5.122396 AGTGTAGATTCATTCGTTTTGCTCC 59.878 40.000 0.00 0.00 0.00 4.70
3865 7357 5.000591 TGTAGATTCATTCGTTTTGCTCCA 58.999 37.500 0.00 0.00 0.00 3.86
3866 7358 5.647658 TGTAGATTCATTCGTTTTGCTCCAT 59.352 36.000 0.00 0.00 0.00 3.41
3867 7359 6.821160 TGTAGATTCATTCGTTTTGCTCCATA 59.179 34.615 0.00 0.00 0.00 2.74
3868 7360 6.949352 AGATTCATTCGTTTTGCTCCATAT 57.051 33.333 0.00 0.00 0.00 1.78
3869 7361 6.732154 AGATTCATTCGTTTTGCTCCATATG 58.268 36.000 0.00 0.00 0.00 1.78
3870 7362 5.895636 TTCATTCGTTTTGCTCCATATGT 57.104 34.783 1.24 0.00 0.00 2.29
3871 7363 6.993786 TTCATTCGTTTTGCTCCATATGTA 57.006 33.333 1.24 0.00 0.00 2.29
3872 7364 6.603237 TCATTCGTTTTGCTCCATATGTAG 57.397 37.500 1.24 0.00 0.00 2.74
3873 7365 6.112734 TCATTCGTTTTGCTCCATATGTAGT 58.887 36.000 1.24 0.00 0.00 2.73
3874 7366 6.257849 TCATTCGTTTTGCTCCATATGTAGTC 59.742 38.462 1.24 0.00 0.00 2.59
3875 7367 5.079689 TCGTTTTGCTCCATATGTAGTCA 57.920 39.130 1.24 0.00 0.00 3.41
3876 7368 4.868171 TCGTTTTGCTCCATATGTAGTCAC 59.132 41.667 1.24 0.00 0.00 3.67
3877 7369 4.870426 CGTTTTGCTCCATATGTAGTCACT 59.130 41.667 1.24 0.00 0.00 3.41
3878 7370 5.351465 CGTTTTGCTCCATATGTAGTCACTT 59.649 40.000 1.24 0.00 0.00 3.16
3879 7371 6.533723 CGTTTTGCTCCATATGTAGTCACTTA 59.466 38.462 1.24 0.00 0.00 2.24
3880 7372 7.224753 CGTTTTGCTCCATATGTAGTCACTTAT 59.775 37.037 1.24 0.00 0.00 1.73
3881 7373 8.893727 GTTTTGCTCCATATGTAGTCACTTATT 58.106 33.333 1.24 0.00 0.00 1.40
3882 7374 8.437360 TTTGCTCCATATGTAGTCACTTATTG 57.563 34.615 1.24 0.00 0.00 1.90
3883 7375 7.360113 TGCTCCATATGTAGTCACTTATTGA 57.640 36.000 1.24 0.00 0.00 2.57
3884 7376 7.791029 TGCTCCATATGTAGTCACTTATTGAA 58.209 34.615 1.24 0.00 35.39 2.69
3885 7377 8.264347 TGCTCCATATGTAGTCACTTATTGAAA 58.736 33.333 1.24 0.00 35.39 2.69
3886 7378 9.277783 GCTCCATATGTAGTCACTTATTGAAAT 57.722 33.333 1.24 0.00 35.39 2.17
3914 7406 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
3915 7407 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
3916 7408 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
3917 7409 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
3918 7410 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
3919 7411 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
3920 7412 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
4190 7690 2.357050 CCTGGACAATGGCACCAATAGA 60.357 50.000 0.00 0.00 33.14 1.98
4641 8146 4.654915 TGTTCTCCCATATATGCCACATG 58.345 43.478 7.24 0.00 0.00 3.21
5097 8602 0.107703 TGGAGTAAGGCCAAGATGCG 60.108 55.000 5.01 0.00 31.13 4.73
5165 8670 4.658063 TCTGCTATTTCTTCCGGGAAAAA 58.342 39.130 11.24 13.52 38.46 1.94
5240 8746 5.977821 TGACTCTTCTATCCTCTAGACCA 57.022 43.478 0.00 0.00 0.00 4.02
5266 8772 4.454504 CGAGTAGGTTGTTAAAATGGCAGT 59.545 41.667 0.00 0.00 0.00 4.40
5436 8942 7.519355 TCCAGAAGTCCCCATTTGGATAATATA 59.481 37.037 0.00 0.00 36.63 0.86
5478 8984 3.961408 ACATAATGACTTAGGCTCGGTCT 59.039 43.478 16.79 4.77 0.00 3.85
5479 8985 4.406003 ACATAATGACTTAGGCTCGGTCTT 59.594 41.667 16.79 10.32 0.00 3.01
5483 8989 4.451629 TGACTTAGGCTCGGTCTTTAAG 57.548 45.455 16.79 4.97 0.00 1.85
5484 8990 4.084287 TGACTTAGGCTCGGTCTTTAAGA 58.916 43.478 16.79 0.00 0.00 2.10
5485 8991 4.158025 TGACTTAGGCTCGGTCTTTAAGAG 59.842 45.833 16.79 0.00 35.28 2.85
5486 8992 4.087907 ACTTAGGCTCGGTCTTTAAGAGT 58.912 43.478 0.00 0.00 34.69 3.24
5487 8993 5.259632 ACTTAGGCTCGGTCTTTAAGAGTA 58.740 41.667 0.00 0.00 34.69 2.59
5488 8994 5.357596 ACTTAGGCTCGGTCTTTAAGAGTAG 59.642 44.000 0.00 0.00 34.69 2.57
5489 8995 2.427812 AGGCTCGGTCTTTAAGAGTAGC 59.572 50.000 12.12 12.12 34.69 3.58
5490 8996 2.165845 GGCTCGGTCTTTAAGAGTAGCA 59.834 50.000 18.49 0.00 34.69 3.49
5492 8998 3.613299 GCTCGGTCTTTAAGAGTAGCAAC 59.387 47.826 14.40 0.00 34.69 4.17
5753 9286 3.119065 GCTTCCAGGTACCTCTACTTCAC 60.119 52.174 12.84 0.00 0.00 3.18
5969 9511 1.139058 TCAAGGCTCGATTCTTAGGCC 59.861 52.381 0.00 0.00 42.74 5.19
6013 9555 2.093447 CGACTTAGGGGCAGAAATGAGT 60.093 50.000 0.00 0.00 0.00 3.41
6150 9697 9.118236 GACTTTTATGTGTAGATTTTTCACTGC 57.882 33.333 0.00 0.00 33.82 4.40
6153 9700 5.689383 ATGTGTAGATTTTTCACTGCGTT 57.311 34.783 0.00 0.00 33.82 4.84
6234 9781 7.767198 TGGTTATTAAAGATACAGAAGGTTCCG 59.233 37.037 0.00 0.00 0.00 4.30
6324 9871 7.619964 TTCCTTTTCAAGTTATATCCCGAAC 57.380 36.000 0.00 0.00 0.00 3.95
6386 9933 2.679082 TGGGTAGGCCTATCTTGTCTC 58.321 52.381 22.45 5.87 34.45 3.36
6387 9934 1.972075 GGGTAGGCCTATCTTGTCTCC 59.028 57.143 22.45 12.58 34.45 3.71
6545 10092 0.890683 GGAAGCCACATCACTTTGGG 59.109 55.000 0.00 0.00 33.01 4.12
6560 10107 0.478072 TTGGGCTTTTCCTCTCTGCA 59.522 50.000 0.00 0.00 34.39 4.41
6624 10171 1.303317 CCTCCCCTTTCCAACACGG 60.303 63.158 0.00 0.00 0.00 4.94
6814 10363 4.264253 TCACAATAGCAGACATTTGGAGG 58.736 43.478 0.00 0.00 0.00 4.30
6815 10364 4.012374 CACAATAGCAGACATTTGGAGGT 58.988 43.478 0.00 0.00 0.00 3.85
6893 10446 5.287513 CGCTACTCTTGAGTTTTAGCTCTTC 59.712 44.000 16.88 0.00 36.51 2.87
6951 10504 0.038892 GCTGCATGGAGTTGTTGGTG 60.039 55.000 16.22 0.00 0.00 4.17
6987 10540 0.323957 AGGACGTACTTTTCTGCCCC 59.676 55.000 0.00 0.00 0.00 5.80
7048 10617 2.012673 GGCTGCTGAGTAAAGGATGTG 58.987 52.381 0.00 0.00 0.00 3.21
7156 13490 1.934589 CAGTGACACTTGTCCGTTGA 58.065 50.000 5.04 0.00 44.15 3.18
7180 13514 3.570125 TGATGCGGGTTCATTTTTGTACA 59.430 39.130 0.00 0.00 0.00 2.90
7182 13516 3.971150 TGCGGGTTCATTTTTGTACAAG 58.029 40.909 8.56 0.00 0.00 3.16
7193 13527 9.793259 TTCATTTTTGTACAAGTAATCTCTCCT 57.207 29.630 8.56 0.00 0.00 3.69
7242 13576 2.925706 TACACAGCCCCCGCTTCA 60.926 61.111 0.00 0.00 45.55 3.02
7244 13578 4.335647 CACAGCCCCCGCTTCAGT 62.336 66.667 0.00 0.00 45.55 3.41
7279 13631 9.077885 GAATAGATTTACATTGAAATGCCCCTA 57.922 33.333 2.92 0.10 40.04 3.53
7293 13645 4.178956 TGCCCCTATCTTTGTAAATCCC 57.821 45.455 0.00 0.00 0.00 3.85
7325 13677 2.487086 CCCGCACCATCATATTCTCCAA 60.487 50.000 0.00 0.00 0.00 3.53
7405 13757 3.132289 GGACCTACCATCGTCTCATCAAA 59.868 47.826 0.00 0.00 38.79 2.69
7431 13783 1.064314 AGAGGACCTATGACACGAGCT 60.064 52.381 0.00 0.00 0.00 4.09
7432 13784 2.172930 AGAGGACCTATGACACGAGCTA 59.827 50.000 0.00 0.00 0.00 3.32
7634 13986 1.407618 GAAACGGGCAAGTTCACCTTT 59.592 47.619 0.00 0.00 32.43 3.11
7864 14218 0.909610 ACATCCGGCCTCTCCTGAAA 60.910 55.000 0.00 0.00 31.60 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.850345 AGACTTTGACTTTGGGACCCA 59.150 47.619 9.95 9.95 0.00 4.51
2 3 2.658807 AGACTTTGACTTTGGGACCC 57.341 50.000 2.45 2.45 0.00 4.46
3 4 3.819337 GGTTAGACTTTGACTTTGGGACC 59.181 47.826 0.00 0.00 0.00 4.46
4 5 4.715713 AGGTTAGACTTTGACTTTGGGAC 58.284 43.478 0.00 0.00 0.00 4.46
5 6 5.104277 TCAAGGTTAGACTTTGACTTTGGGA 60.104 40.000 2.04 0.00 38.94 4.37
6 7 5.130350 TCAAGGTTAGACTTTGACTTTGGG 58.870 41.667 2.04 0.00 38.94 4.12
7 8 6.693315 TTCAAGGTTAGACTTTGACTTTGG 57.307 37.500 5.29 0.00 42.67 3.28
8 9 7.042051 TCGATTCAAGGTTAGACTTTGACTTTG 60.042 37.037 5.29 2.13 42.67 2.77
9 10 6.990349 TCGATTCAAGGTTAGACTTTGACTTT 59.010 34.615 5.29 0.00 42.67 2.66
10 11 6.522054 TCGATTCAAGGTTAGACTTTGACTT 58.478 36.000 5.29 0.00 42.67 3.01
11 12 6.097915 TCGATTCAAGGTTAGACTTTGACT 57.902 37.500 5.29 1.15 42.67 3.41
12 13 6.780706 TTCGATTCAAGGTTAGACTTTGAC 57.219 37.500 5.29 0.00 42.67 3.18
13 14 6.128282 GCATTCGATTCAAGGTTAGACTTTGA 60.128 38.462 2.04 2.04 41.53 2.69
14 15 6.024049 GCATTCGATTCAAGGTTAGACTTTG 58.976 40.000 0.00 0.00 36.63 2.77
15 16 5.163854 CGCATTCGATTCAAGGTTAGACTTT 60.164 40.000 0.00 0.00 38.10 2.66
16 17 4.330074 CGCATTCGATTCAAGGTTAGACTT 59.670 41.667 0.00 0.00 38.10 3.01
17 18 3.865745 CGCATTCGATTCAAGGTTAGACT 59.134 43.478 0.00 0.00 38.10 3.24
18 19 3.617263 ACGCATTCGATTCAAGGTTAGAC 59.383 43.478 0.00 0.00 39.41 2.59
19 20 3.616821 CACGCATTCGATTCAAGGTTAGA 59.383 43.478 0.00 0.00 39.41 2.10
20 21 3.370978 ACACGCATTCGATTCAAGGTTAG 59.629 43.478 0.00 0.00 39.41 2.34
21 22 3.331150 ACACGCATTCGATTCAAGGTTA 58.669 40.909 0.00 0.00 39.41 2.85
22 23 2.151202 ACACGCATTCGATTCAAGGTT 58.849 42.857 0.00 0.00 39.41 3.50
23 24 1.808411 ACACGCATTCGATTCAAGGT 58.192 45.000 0.00 0.00 39.41 3.50
24 25 4.201812 ACATTACACGCATTCGATTCAAGG 60.202 41.667 0.00 0.00 39.41 3.61
25 26 4.897224 ACATTACACGCATTCGATTCAAG 58.103 39.130 0.00 0.00 39.41 3.02
26 27 4.937696 ACATTACACGCATTCGATTCAA 57.062 36.364 0.00 0.00 39.41 2.69
27 28 4.865365 TGTACATTACACGCATTCGATTCA 59.135 37.500 0.00 0.00 39.41 2.57
28 29 5.383984 TGTACATTACACGCATTCGATTC 57.616 39.130 0.00 0.00 39.41 2.52
29 30 5.788055 TTGTACATTACACGCATTCGATT 57.212 34.783 0.00 0.00 38.63 3.34
30 31 5.120986 TGTTTGTACATTACACGCATTCGAT 59.879 36.000 0.00 0.00 38.63 3.59
31 32 4.448060 TGTTTGTACATTACACGCATTCGA 59.552 37.500 0.00 0.00 38.63 3.71
32 33 4.703424 TGTTTGTACATTACACGCATTCG 58.297 39.130 0.00 0.00 38.63 3.34
33 34 6.799441 TCATTGTTTGTACATTACACGCATTC 59.201 34.615 10.00 0.00 38.63 2.67
34 35 6.673106 TCATTGTTTGTACATTACACGCATT 58.327 32.000 10.00 0.00 38.63 3.56
35 36 6.247727 TCATTGTTTGTACATTACACGCAT 57.752 33.333 10.00 1.31 38.63 4.73
36 37 5.674933 TCATTGTTTGTACATTACACGCA 57.325 34.783 10.00 0.00 38.63 5.24
37 38 8.662369 TTTATCATTGTTTGTACATTACACGC 57.338 30.769 10.00 0.00 38.63 5.34
43 44 9.272901 CGTTCGATTTATCATTGTTTGTACATT 57.727 29.630 0.00 0.00 33.44 2.71
44 45 7.428183 GCGTTCGATTTATCATTGTTTGTACAT 59.572 33.333 0.00 0.00 33.44 2.29
45 46 6.739100 GCGTTCGATTTATCATTGTTTGTACA 59.261 34.615 0.00 0.00 0.00 2.90
46 47 6.076812 CGCGTTCGATTTATCATTGTTTGTAC 60.077 38.462 0.00 0.00 38.10 2.90
47 48 5.954922 CGCGTTCGATTTATCATTGTTTGTA 59.045 36.000 0.00 0.00 38.10 2.41
48 49 4.786068 CGCGTTCGATTTATCATTGTTTGT 59.214 37.500 0.00 0.00 38.10 2.83
49 50 4.202158 CCGCGTTCGATTTATCATTGTTTG 59.798 41.667 4.92 0.00 38.10 2.93
50 51 4.339429 CCGCGTTCGATTTATCATTGTTT 58.661 39.130 4.92 0.00 38.10 2.83
51 52 3.787476 GCCGCGTTCGATTTATCATTGTT 60.787 43.478 4.92 0.00 38.10 2.83
52 53 2.286184 GCCGCGTTCGATTTATCATTGT 60.286 45.455 4.92 0.00 38.10 2.71
53 54 2.298300 GCCGCGTTCGATTTATCATTG 58.702 47.619 4.92 0.00 38.10 2.82
54 55 1.263217 GGCCGCGTTCGATTTATCATT 59.737 47.619 4.92 0.00 38.10 2.57
55 56 0.865769 GGCCGCGTTCGATTTATCAT 59.134 50.000 4.92 0.00 38.10 2.45
56 57 1.484227 CGGCCGCGTTCGATTTATCA 61.484 55.000 14.67 0.00 38.10 2.15
57 58 1.200839 CGGCCGCGTTCGATTTATC 59.799 57.895 14.67 0.00 38.10 1.75
58 59 2.877974 GCGGCCGCGTTCGATTTAT 61.878 57.895 37.24 0.00 38.10 1.40
59 60 3.556549 GCGGCCGCGTTCGATTTA 61.557 61.111 37.24 0.00 38.10 1.40
70 71 3.876198 CTCAATTTCCCGCGGCCG 61.876 66.667 24.05 24.05 0.00 6.13
71 72 3.518068 CCTCAATTTCCCGCGGCC 61.518 66.667 22.85 0.00 0.00 6.13
72 73 4.193334 GCCTCAATTTCCCGCGGC 62.193 66.667 22.85 0.00 0.00 6.53
73 74 1.153249 TAGCCTCAATTTCCCGCGG 60.153 57.895 21.04 21.04 0.00 6.46
74 75 0.742990 TGTAGCCTCAATTTCCCGCG 60.743 55.000 0.00 0.00 0.00 6.46
75 76 1.017387 CTGTAGCCTCAATTTCCCGC 58.983 55.000 0.00 0.00 0.00 6.13
76 77 2.168521 TCTCTGTAGCCTCAATTTCCCG 59.831 50.000 0.00 0.00 0.00 5.14
77 78 3.432890 CCTCTCTGTAGCCTCAATTTCCC 60.433 52.174 0.00 0.00 0.00 3.97
78 79 3.452627 TCCTCTCTGTAGCCTCAATTTCC 59.547 47.826 0.00 0.00 0.00 3.13
79 80 4.081420 TGTCCTCTCTGTAGCCTCAATTTC 60.081 45.833 0.00 0.00 0.00 2.17
80 81 3.840666 TGTCCTCTCTGTAGCCTCAATTT 59.159 43.478 0.00 0.00 0.00 1.82
81 82 3.445008 TGTCCTCTCTGTAGCCTCAATT 58.555 45.455 0.00 0.00 0.00 2.32
82 83 3.107402 TGTCCTCTCTGTAGCCTCAAT 57.893 47.619 0.00 0.00 0.00 2.57
83 84 2.604912 TGTCCTCTCTGTAGCCTCAA 57.395 50.000 0.00 0.00 0.00 3.02
84 85 2.836636 ATGTCCTCTCTGTAGCCTCA 57.163 50.000 0.00 0.00 0.00 3.86
85 86 3.153919 CCTATGTCCTCTCTGTAGCCTC 58.846 54.545 0.00 0.00 0.00 4.70
86 87 2.158385 CCCTATGTCCTCTCTGTAGCCT 60.158 54.545 0.00 0.00 0.00 4.58
87 88 2.243810 CCCTATGTCCTCTCTGTAGCC 58.756 57.143 0.00 0.00 0.00 3.93
88 89 1.616374 GCCCTATGTCCTCTCTGTAGC 59.384 57.143 0.00 0.00 0.00 3.58
89 90 2.950781 TGCCCTATGTCCTCTCTGTAG 58.049 52.381 0.00 0.00 0.00 2.74
90 91 3.619900 ATGCCCTATGTCCTCTCTGTA 57.380 47.619 0.00 0.00 0.00 2.74
91 92 2.485966 ATGCCCTATGTCCTCTCTGT 57.514 50.000 0.00 0.00 0.00 3.41
92 93 3.007398 GGTAATGCCCTATGTCCTCTCTG 59.993 52.174 0.00 0.00 0.00 3.35
93 94 3.243724 GGTAATGCCCTATGTCCTCTCT 58.756 50.000 0.00 0.00 0.00 3.10
94 95 2.028930 CGGTAATGCCCTATGTCCTCTC 60.029 54.545 0.00 0.00 0.00 3.20
95 96 1.971357 CGGTAATGCCCTATGTCCTCT 59.029 52.381 0.00 0.00 0.00 3.69
96 97 1.692519 ACGGTAATGCCCTATGTCCTC 59.307 52.381 0.00 0.00 0.00 3.71
97 98 1.802553 ACGGTAATGCCCTATGTCCT 58.197 50.000 0.00 0.00 0.00 3.85
395 396 2.434884 CTGCGGCGACCACAAGAT 60.435 61.111 12.98 0.00 0.00 2.40
396 397 4.680237 CCTGCGGCGACCACAAGA 62.680 66.667 12.98 0.00 0.00 3.02
397 398 4.988598 ACCTGCGGCGACCACAAG 62.989 66.667 12.98 0.00 0.00 3.16
406 407 3.952675 CACACACACACCTGCGGC 61.953 66.667 0.00 0.00 0.00 6.53
407 408 2.513666 ACACACACACACCTGCGG 60.514 61.111 0.00 0.00 0.00 5.69
408 409 2.106074 ACACACACACACACCTGCG 61.106 57.895 0.00 0.00 0.00 5.18
409 410 1.305219 ACACACACACACACACCTGC 61.305 55.000 0.00 0.00 0.00 4.85
410 411 0.447406 CACACACACACACACACCTG 59.553 55.000 0.00 0.00 0.00 4.00
411 412 0.036164 ACACACACACACACACACCT 59.964 50.000 0.00 0.00 0.00 4.00
412 413 0.167908 CACACACACACACACACACC 59.832 55.000 0.00 0.00 0.00 4.16
413 414 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
414 415 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
415 416 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
416 417 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
417 418 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
418 419 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
419 420 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
420 421 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
421 422 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
422 423 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
423 424 0.167908 CCACACACACACACACACAC 59.832 55.000 0.00 0.00 0.00 3.82
424 425 0.957888 CCCACACACACACACACACA 60.958 55.000 0.00 0.00 0.00 3.72
425 426 0.958382 ACCCACACACACACACACAC 60.958 55.000 0.00 0.00 0.00 3.82
426 427 0.957888 CACCCACACACACACACACA 60.958 55.000 0.00 0.00 0.00 3.72
427 428 0.958382 ACACCCACACACACACACAC 60.958 55.000 0.00 0.00 0.00 3.82
428 429 0.957888 CACACCCACACACACACACA 60.958 55.000 0.00 0.00 0.00 3.72
429 430 0.958382 ACACACCCACACACACACAC 60.958 55.000 0.00 0.00 0.00 3.82
430 431 0.957888 CACACACCCACACACACACA 60.958 55.000 0.00 0.00 0.00 3.72
431 432 0.958382 ACACACACCCACACACACAC 60.958 55.000 0.00 0.00 0.00 3.82
432 433 0.957888 CACACACACCCACACACACA 60.958 55.000 0.00 0.00 0.00 3.72
433 434 0.958382 ACACACACACCCACACACAC 60.958 55.000 0.00 0.00 0.00 3.82
434 435 0.957888 CACACACACACCCACACACA 60.958 55.000 0.00 0.00 0.00 3.72
435 436 0.958382 ACACACACACACCCACACAC 60.958 55.000 0.00 0.00 0.00 3.82
436 437 0.957888 CACACACACACACCCACACA 60.958 55.000 0.00 0.00 0.00 3.72
437 438 0.958382 ACACACACACACACCCACAC 60.958 55.000 0.00 0.00 0.00 3.82
438 439 0.957888 CACACACACACACACCCACA 60.958 55.000 0.00 0.00 0.00 4.17
439 440 0.675208 TCACACACACACACACCCAC 60.675 55.000 0.00 0.00 0.00 4.61
440 441 0.392327 CTCACACACACACACACCCA 60.392 55.000 0.00 0.00 0.00 4.51
441 442 0.107897 TCTCACACACACACACACCC 60.108 55.000 0.00 0.00 0.00 4.61
442 443 1.134818 TCTCTCACACACACACACACC 60.135 52.381 0.00 0.00 0.00 4.16
443 444 2.159240 TCTCTCTCACACACACACACAC 60.159 50.000 0.00 0.00 0.00 3.82
444 445 2.099405 TCTCTCTCACACACACACACA 58.901 47.619 0.00 0.00 0.00 3.72
445 446 2.359214 TCTCTCTCTCACACACACACAC 59.641 50.000 0.00 0.00 0.00 3.82
446 447 2.620585 CTCTCTCTCTCACACACACACA 59.379 50.000 0.00 0.00 0.00 3.72
447 448 2.881513 TCTCTCTCTCTCACACACACAC 59.118 50.000 0.00 0.00 0.00 3.82
448 449 3.145286 CTCTCTCTCTCTCACACACACA 58.855 50.000 0.00 0.00 0.00 3.72
449 450 3.407698 TCTCTCTCTCTCTCACACACAC 58.592 50.000 0.00 0.00 0.00 3.82
450 451 3.326297 TCTCTCTCTCTCTCTCACACACA 59.674 47.826 0.00 0.00 0.00 3.72
451 452 3.935203 CTCTCTCTCTCTCTCTCACACAC 59.065 52.174 0.00 0.00 0.00 3.82
452 453 3.837731 TCTCTCTCTCTCTCTCTCACACA 59.162 47.826 0.00 0.00 0.00 3.72
453 454 4.160439 TCTCTCTCTCTCTCTCTCTCACAC 59.840 50.000 0.00 0.00 0.00 3.82
454 455 4.352893 TCTCTCTCTCTCTCTCTCTCACA 58.647 47.826 0.00 0.00 0.00 3.58
455 456 4.646945 TCTCTCTCTCTCTCTCTCTCTCAC 59.353 50.000 0.00 0.00 0.00 3.51
456 457 4.871822 TCTCTCTCTCTCTCTCTCTCTCA 58.128 47.826 0.00 0.00 0.00 3.27
457 458 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
458 459 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
459 460 4.280677 CCTCTCTCTCTCTCTCTCTCTCTC 59.719 54.167 0.00 0.00 0.00 3.20
460 461 4.222336 CCTCTCTCTCTCTCTCTCTCTCT 58.778 52.174 0.00 0.00 0.00 3.10
461 462 3.964031 ACCTCTCTCTCTCTCTCTCTCTC 59.036 52.174 0.00 0.00 0.00 3.20
462 463 3.708631 CACCTCTCTCTCTCTCTCTCTCT 59.291 52.174 0.00 0.00 0.00 3.10
463 464 3.706594 TCACCTCTCTCTCTCTCTCTCTC 59.293 52.174 0.00 0.00 0.00 3.20
464 465 3.724478 TCACCTCTCTCTCTCTCTCTCT 58.276 50.000 0.00 0.00 0.00 3.10
465 466 4.487714 TTCACCTCTCTCTCTCTCTCTC 57.512 50.000 0.00 0.00 0.00 3.20
466 467 4.927267 TTTCACCTCTCTCTCTCTCTCT 57.073 45.455 0.00 0.00 0.00 3.10
467 468 5.105756 CCTTTTTCACCTCTCTCTCTCTCTC 60.106 48.000 0.00 0.00 0.00 3.20
468 469 4.772100 CCTTTTTCACCTCTCTCTCTCTCT 59.228 45.833 0.00 0.00 0.00 3.10
469 470 4.081697 CCCTTTTTCACCTCTCTCTCTCTC 60.082 50.000 0.00 0.00 0.00 3.20
470 471 3.837731 CCCTTTTTCACCTCTCTCTCTCT 59.162 47.826 0.00 0.00 0.00 3.10
471 472 3.055458 CCCCTTTTTCACCTCTCTCTCTC 60.055 52.174 0.00 0.00 0.00 3.20
472 473 2.909662 CCCCTTTTTCACCTCTCTCTCT 59.090 50.000 0.00 0.00 0.00 3.10
473 474 2.640332 ACCCCTTTTTCACCTCTCTCTC 59.360 50.000 0.00 0.00 0.00 3.20
474 475 2.707554 ACCCCTTTTTCACCTCTCTCT 58.292 47.619 0.00 0.00 0.00 3.10
475 476 4.286291 TCTTACCCCTTTTTCACCTCTCTC 59.714 45.833 0.00 0.00 0.00 3.20
476 477 4.240323 TCTTACCCCTTTTTCACCTCTCT 58.760 43.478 0.00 0.00 0.00 3.10
477 478 4.565861 CCTCTTACCCCTTTTTCACCTCTC 60.566 50.000 0.00 0.00 0.00 3.20
478 479 3.330998 CCTCTTACCCCTTTTTCACCTCT 59.669 47.826 0.00 0.00 0.00 3.69
479 480 3.329814 TCCTCTTACCCCTTTTTCACCTC 59.670 47.826 0.00 0.00 0.00 3.85
480 481 3.330998 CTCCTCTTACCCCTTTTTCACCT 59.669 47.826 0.00 0.00 0.00 4.00
481 482 3.074094 ACTCCTCTTACCCCTTTTTCACC 59.926 47.826 0.00 0.00 0.00 4.02
482 483 4.368565 ACTCCTCTTACCCCTTTTTCAC 57.631 45.455 0.00 0.00 0.00 3.18
483 484 6.466759 CCTTAACTCCTCTTACCCCTTTTTCA 60.467 42.308 0.00 0.00 0.00 2.69
484 485 5.944599 CCTTAACTCCTCTTACCCCTTTTTC 59.055 44.000 0.00 0.00 0.00 2.29
485 486 5.751128 GCCTTAACTCCTCTTACCCCTTTTT 60.751 44.000 0.00 0.00 0.00 1.94
486 487 4.263816 GCCTTAACTCCTCTTACCCCTTTT 60.264 45.833 0.00 0.00 0.00 2.27
487 488 3.266254 GCCTTAACTCCTCTTACCCCTTT 59.734 47.826 0.00 0.00 0.00 3.11
488 489 2.844966 GCCTTAACTCCTCTTACCCCTT 59.155 50.000 0.00 0.00 0.00 3.95
489 490 2.479340 GCCTTAACTCCTCTTACCCCT 58.521 52.381 0.00 0.00 0.00 4.79
490 491 1.138464 CGCCTTAACTCCTCTTACCCC 59.862 57.143 0.00 0.00 0.00 4.95
491 492 1.472904 GCGCCTTAACTCCTCTTACCC 60.473 57.143 0.00 0.00 0.00 3.69
492 493 1.472904 GGCGCCTTAACTCCTCTTACC 60.473 57.143 22.15 0.00 0.00 2.85
493 494 1.206371 TGGCGCCTTAACTCCTCTTAC 59.794 52.381 29.70 0.00 0.00 2.34
494 495 1.206371 GTGGCGCCTTAACTCCTCTTA 59.794 52.381 29.70 0.00 0.00 2.10
495 496 0.036294 GTGGCGCCTTAACTCCTCTT 60.036 55.000 29.70 0.00 0.00 2.85
496 497 0.905337 AGTGGCGCCTTAACTCCTCT 60.905 55.000 29.70 8.66 0.00 3.69
497 498 0.036294 AAGTGGCGCCTTAACTCCTC 60.036 55.000 29.70 6.53 0.00 3.71
498 499 0.036294 GAAGTGGCGCCTTAACTCCT 60.036 55.000 29.70 8.71 0.00 3.69
501 502 1.375523 CCGAAGTGGCGCCTTAACT 60.376 57.895 29.70 20.31 0.00 2.24
519 520 1.302271 GAGACCCCGTGTTGGTTCC 60.302 63.158 0.00 0.00 35.85 3.62
520 521 1.302271 GGAGACCCCGTGTTGGTTC 60.302 63.158 0.00 0.00 35.85 3.62
540 541 3.414700 GAGGAGGTTGCACGTGCG 61.415 66.667 33.22 1.65 45.83 5.34
551 552 3.669939 AAAATACATGGGTGGAGGAGG 57.330 47.619 0.00 0.00 0.00 4.30
557 558 6.876789 GGTTTTTCCTAAAAATACATGGGTGG 59.123 38.462 0.00 0.00 41.85 4.61
565 566 4.925054 GGTGCCGGTTTTTCCTAAAAATAC 59.075 41.667 1.90 0.00 41.85 1.89
566 567 4.587684 TGGTGCCGGTTTTTCCTAAAAATA 59.412 37.500 1.90 0.00 41.85 1.40
575 576 1.468506 ATGGGTGGTGCCGGTTTTTC 61.469 55.000 1.90 0.00 38.44 2.29
579 580 1.226262 GATATGGGTGGTGCCGGTT 59.774 57.895 1.90 0.00 38.44 4.44
584 585 1.271597 GGGATCAGATATGGGTGGTGC 60.272 57.143 0.00 0.00 0.00 5.01
590 591 1.269958 TGCGAGGGATCAGATATGGG 58.730 55.000 0.00 0.00 0.00 4.00
591 592 2.480932 CGATGCGAGGGATCAGATATGG 60.481 54.545 0.00 0.00 0.00 2.74
592 593 2.807044 CGATGCGAGGGATCAGATATG 58.193 52.381 0.00 0.00 0.00 1.78
594 595 0.528017 GCGATGCGAGGGATCAGATA 59.472 55.000 0.00 0.00 0.00 1.98
595 596 1.291588 GCGATGCGAGGGATCAGAT 59.708 57.895 0.00 0.00 0.00 2.90
597 598 2.356793 GGCGATGCGAGGGATCAG 60.357 66.667 0.00 0.00 0.00 2.90
608 609 4.899239 GAGTCAGGCCCGGCGATG 62.899 72.222 9.30 5.09 0.00 3.84
612 613 2.748058 TTTTCAGAGTCAGGCCCGGC 62.748 60.000 0.00 0.00 0.00 6.13
613 614 0.250727 TTTTTCAGAGTCAGGCCCGG 60.251 55.000 0.00 0.00 0.00 5.73
614 615 3.322514 TTTTTCAGAGTCAGGCCCG 57.677 52.632 0.00 0.00 0.00 6.13
635 636 3.567797 GGCACGCTCGAATCAGCC 61.568 66.667 3.31 3.31 35.84 4.85
636 637 2.510238 AGGCACGCTCGAATCAGC 60.510 61.111 0.00 0.00 35.90 4.26
637 638 1.880340 GGAGGCACGCTCGAATCAG 60.880 63.158 0.00 0.00 0.00 2.90
638 639 2.166130 TTGGAGGCACGCTCGAATCA 62.166 55.000 0.00 0.00 0.00 2.57
644 645 1.079127 TAGCTTTGGAGGCACGCTC 60.079 57.895 0.00 0.00 32.49 5.03
654 655 0.613777 ACCTTCCGGTCTAGCTTTGG 59.386 55.000 0.00 0.00 40.27 3.28
659 660 0.460459 GAAGCACCTTCCGGTCTAGC 60.460 60.000 0.00 0.51 43.24 3.42
660 661 0.895530 TGAAGCACCTTCCGGTCTAG 59.104 55.000 0.00 0.00 43.24 2.43
661 662 1.344065 TTGAAGCACCTTCCGGTCTA 58.656 50.000 0.00 0.00 43.24 2.59
663 664 1.314730 TTTTGAAGCACCTTCCGGTC 58.685 50.000 0.00 0.00 43.24 4.79
696 697 4.250116 TGTGTGCAAATATTGTTGGGTC 57.750 40.909 0.00 0.00 0.00 4.46
700 701 6.786573 CGTTTGATTGTGTGCAAATATTGTTG 59.213 34.615 0.00 0.00 38.21 3.33
703 704 6.290643 CACGTTTGATTGTGTGCAAATATTG 58.709 36.000 0.00 0.00 38.21 1.90
713 714 0.951558 GGAGGCACGTTTGATTGTGT 59.048 50.000 0.00 0.00 38.36 3.72
717 718 2.293399 GACTTTGGAGGCACGTTTGATT 59.707 45.455 0.00 0.00 0.00 2.57
737 738 3.119990 GGATGCGATTTTCGAAGGTTTGA 60.120 43.478 0.00 0.00 43.74 2.69
868 2131 2.193536 ACCAAGGGACGCTTTGTGC 61.194 57.895 8.02 0.00 38.37 4.57
1139 2402 0.107557 ATCACCACATGATGCTCGCA 60.108 50.000 0.00 0.00 46.85 5.10
1152 2415 1.037579 ACGGAGCGATGAGATCACCA 61.038 55.000 0.00 0.00 36.90 4.17
1367 2630 7.278868 CCCGAAATAATCCTGCATAAGATAGAC 59.721 40.741 0.00 0.00 0.00 2.59
1370 2633 6.012858 ACCCCGAAATAATCCTGCATAAGATA 60.013 38.462 0.00 0.00 0.00 1.98
1377 2640 2.484065 CGTACCCCGAAATAATCCTGCA 60.484 50.000 0.00 0.00 39.56 4.41
1504 2767 1.732259 CGAACTGAAGCAAGCGGTAAT 59.268 47.619 0.00 0.00 0.00 1.89
1505 2768 1.144969 CGAACTGAAGCAAGCGGTAA 58.855 50.000 0.00 0.00 0.00 2.85
1568 2831 4.572389 GCAGTACAAATGCAGCACTATACT 59.428 41.667 0.00 0.75 43.31 2.12
1718 2990 6.727824 AAGAACCAATAGTGATCAGTTTCG 57.272 37.500 8.68 0.00 0.00 3.46
1728 3000 7.081349 TCGTGCAATAAAAAGAACCAATAGTG 58.919 34.615 0.00 0.00 0.00 2.74
1729 3001 7.209471 TCGTGCAATAAAAAGAACCAATAGT 57.791 32.000 0.00 0.00 0.00 2.12
1738 3010 6.072175 ACCAAGCTAATCGTGCAATAAAAAGA 60.072 34.615 0.00 0.00 0.00 2.52
2099 3413 4.380531 AGATATTGGCAACTGACATACCG 58.619 43.478 0.00 0.00 30.06 4.02
2157 3471 3.843893 ATTTGGAAGTGGCAGCTTTTT 57.156 38.095 0.00 0.00 0.00 1.94
2158 3472 5.488262 AATATTTGGAAGTGGCAGCTTTT 57.512 34.783 0.00 0.00 0.00 2.27
2206 3521 6.934645 TGAAAAACCTACAGTCCTGAATACAG 59.065 38.462 0.40 0.00 43.12 2.74
2300 3660 5.048224 ACCTGACAATGCATGAAAGAGAAAG 60.048 40.000 0.00 0.00 0.00 2.62
2424 3785 4.023193 CCTTTGAAAATACCGCAGAGTTGT 60.023 41.667 0.00 0.00 0.00 3.32
2443 3804 1.283321 GAGACCCCTTCAGCATCCTTT 59.717 52.381 0.00 0.00 0.00 3.11
2697 4066 7.547019 CCAGTTGTACTGCTCATATGTATATGG 59.453 40.741 10.96 4.69 44.63 2.74
2711 4080 1.602377 AGAAAACGCCAGTTGTACTGC 59.398 47.619 1.31 0.00 44.63 4.40
2733 4102 2.567615 GAGAGCCAGGAGGAACAGTTTA 59.432 50.000 0.00 0.00 36.89 2.01
2774 4143 0.463654 TTCACTTGCCTGTTGAGCGT 60.464 50.000 0.00 0.00 0.00 5.07
2776 4145 1.312815 ACTTCACTTGCCTGTTGAGC 58.687 50.000 0.00 0.00 0.00 4.26
2890 4259 9.819267 CTCCCTCTAAAGAAATATAAGAACGTT 57.181 33.333 0.00 0.00 0.00 3.99
2891 4260 8.979534 ACTCCCTCTAAAGAAATATAAGAACGT 58.020 33.333 0.00 0.00 0.00 3.99
2902 4271 9.716556 ACATAAGAGATACTCCCTCTAAAGAAA 57.283 33.333 0.00 0.00 39.88 2.52
2949 4318 9.891828 CAACAGCAGTAAATATTTGTCAACTAA 57.108 29.630 11.05 0.00 0.00 2.24
3114 6597 6.048732 TCAAGTATGATCAGCACCAAAGTA 57.951 37.500 0.09 0.00 0.00 2.24
3140 6625 6.579865 AGCAATATAAGCCTAGTGTACGTTT 58.420 36.000 0.00 0.00 0.00 3.60
3141 6626 6.158023 AGCAATATAAGCCTAGTGTACGTT 57.842 37.500 0.00 0.00 0.00 3.99
3301 6786 7.391148 AGCACGTTTACTTAATTGGATCATT 57.609 32.000 0.00 0.00 0.00 2.57
3421 6906 2.224042 CCGCTGTCTGATATGCTGGTTA 60.224 50.000 0.00 0.00 0.00 2.85
3534 7019 2.885266 GTCATCTGCAGCCATTGATCAT 59.115 45.455 9.47 0.00 0.00 2.45
3537 7022 1.214673 AGGTCATCTGCAGCCATTGAT 59.785 47.619 9.47 0.00 0.00 2.57
3615 7100 9.082313 TCTCATAAATTTCAAAAAGAGAGGCTT 57.918 29.630 0.00 0.00 38.88 4.35
3648 7135 7.903431 GGAATAAATGAACACGAATACACAGAC 59.097 37.037 0.00 0.00 0.00 3.51
3697 7184 4.351111 AGATCACTAATGGGGTGGGATAAC 59.649 45.833 0.00 0.00 35.61 1.89
3716 7205 3.449018 AGAGTGTGGACATGTGGTAGATC 59.551 47.826 1.15 0.00 0.00 2.75
3780 7272 9.003658 GTCCATTTGAAATCTCTAGAAAGACAA 57.996 33.333 0.00 0.00 0.00 3.18
3781 7273 8.378565 AGTCCATTTGAAATCTCTAGAAAGACA 58.621 33.333 0.00 0.00 0.00 3.41
3783 7275 9.877178 GTAGTCCATTTGAAATCTCTAGAAAGA 57.123 33.333 0.00 0.00 0.00 2.52
3785 7277 8.602424 TGGTAGTCCATTTGAAATCTCTAGAAA 58.398 33.333 0.00 0.00 39.03 2.52
3788 7280 7.331026 TGTGGTAGTCCATTTGAAATCTCTAG 58.669 38.462 0.00 0.00 46.20 2.43
3790 7282 6.126863 TGTGGTAGTCCATTTGAAATCTCT 57.873 37.500 0.00 0.00 46.20 3.10
3792 7284 6.538742 CGTATGTGGTAGTCCATTTGAAATCT 59.461 38.462 0.00 0.00 46.20 2.40
3793 7285 6.238374 CCGTATGTGGTAGTCCATTTGAAATC 60.238 42.308 0.00 0.00 46.20 2.17
3795 7287 4.938832 CCGTATGTGGTAGTCCATTTGAAA 59.061 41.667 0.00 0.00 46.20 2.69
3796 7288 4.223255 TCCGTATGTGGTAGTCCATTTGAA 59.777 41.667 0.00 0.00 46.20 2.69
3798 7290 4.131649 TCCGTATGTGGTAGTCCATTTG 57.868 45.455 0.00 0.00 46.20 2.32
3799 7291 4.163458 ACATCCGTATGTGGTAGTCCATTT 59.837 41.667 0.00 0.00 44.79 2.32
3800 7292 3.709653 ACATCCGTATGTGGTAGTCCATT 59.290 43.478 0.00 0.00 44.79 3.16
3801 7293 3.305720 ACATCCGTATGTGGTAGTCCAT 58.694 45.455 0.00 0.00 44.79 3.41
3802 7294 2.742348 ACATCCGTATGTGGTAGTCCA 58.258 47.619 0.00 0.00 44.79 4.02
3803 7295 6.770746 ATATACATCCGTATGTGGTAGTCC 57.229 41.667 3.56 0.00 45.99 3.85
3804 7296 8.610896 GTCTATATACATCCGTATGTGGTAGTC 58.389 40.741 3.56 0.00 45.99 2.59
3805 7297 8.105197 TGTCTATATACATCCGTATGTGGTAGT 58.895 37.037 3.56 0.00 45.99 2.73
3806 7298 8.502105 TGTCTATATACATCCGTATGTGGTAG 57.498 38.462 3.56 3.93 45.99 3.18
3808 7300 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
3835 7327 8.227791 GCAAAACGAATGAATCTACACTCTAAA 58.772 33.333 0.00 0.00 0.00 1.85
3836 7328 7.602644 AGCAAAACGAATGAATCTACACTCTAA 59.397 33.333 0.00 0.00 0.00 2.10
3837 7329 7.097192 AGCAAAACGAATGAATCTACACTCTA 58.903 34.615 0.00 0.00 0.00 2.43
3838 7330 5.934625 AGCAAAACGAATGAATCTACACTCT 59.065 36.000 0.00 0.00 0.00 3.24
3839 7331 6.170675 AGCAAAACGAATGAATCTACACTC 57.829 37.500 0.00 0.00 0.00 3.51
3840 7332 5.122396 GGAGCAAAACGAATGAATCTACACT 59.878 40.000 0.00 0.00 0.00 3.55
3841 7333 5.106712 TGGAGCAAAACGAATGAATCTACAC 60.107 40.000 0.00 0.00 0.00 2.90
3842 7334 5.000591 TGGAGCAAAACGAATGAATCTACA 58.999 37.500 0.00 0.00 0.00 2.74
3843 7335 5.545658 TGGAGCAAAACGAATGAATCTAC 57.454 39.130 0.00 0.00 0.00 2.59
3844 7336 7.498900 ACATATGGAGCAAAACGAATGAATCTA 59.501 33.333 7.80 0.00 0.00 1.98
3845 7337 6.319658 ACATATGGAGCAAAACGAATGAATCT 59.680 34.615 7.80 0.00 0.00 2.40
3846 7338 6.498304 ACATATGGAGCAAAACGAATGAATC 58.502 36.000 7.80 0.00 0.00 2.52
3847 7339 6.455360 ACATATGGAGCAAAACGAATGAAT 57.545 33.333 7.80 0.00 0.00 2.57
3848 7340 5.895636 ACATATGGAGCAAAACGAATGAA 57.104 34.783 7.80 0.00 0.00 2.57
3849 7341 6.112734 ACTACATATGGAGCAAAACGAATGA 58.887 36.000 15.30 0.00 0.00 2.57
3850 7342 6.037062 TGACTACATATGGAGCAAAACGAATG 59.963 38.462 15.30 0.00 0.00 2.67
3851 7343 6.037172 GTGACTACATATGGAGCAAAACGAAT 59.963 38.462 15.30 0.00 0.00 3.34
3852 7344 5.350365 GTGACTACATATGGAGCAAAACGAA 59.650 40.000 15.30 0.00 0.00 3.85
3853 7345 4.868171 GTGACTACATATGGAGCAAAACGA 59.132 41.667 15.30 0.00 0.00 3.85
3854 7346 4.870426 AGTGACTACATATGGAGCAAAACG 59.130 41.667 15.30 0.00 0.00 3.60
3855 7347 6.743575 AAGTGACTACATATGGAGCAAAAC 57.256 37.500 15.30 8.11 0.00 2.43
3856 7348 8.892723 CAATAAGTGACTACATATGGAGCAAAA 58.107 33.333 15.30 4.06 0.00 2.44
3857 7349 8.264347 TCAATAAGTGACTACATATGGAGCAAA 58.736 33.333 15.30 0.00 0.00 3.68
3858 7350 7.791029 TCAATAAGTGACTACATATGGAGCAA 58.209 34.615 15.30 0.16 0.00 3.91
3859 7351 7.360113 TCAATAAGTGACTACATATGGAGCA 57.640 36.000 15.30 10.95 0.00 4.26
3860 7352 8.662781 TTTCAATAAGTGACTACATATGGAGC 57.337 34.615 15.30 8.47 35.39 4.70
3888 7380 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
3889 7381 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
3890 7382 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
3891 7383 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
3892 7384 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
3893 7385 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
3894 7386 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
3895 7387 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
3896 7388 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
3897 7389 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
3898 7390 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
3899 7391 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
3900 7392 5.901276 TGTACTCCCTCCGTTCCTAAATATT 59.099 40.000 0.00 0.00 0.00 1.28
3901 7393 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
3902 7394 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
3903 7395 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
3904 7396 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
3905 7397 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
3906 7398 2.024655 ACATGTACTCCCTCCGTTCCTA 60.025 50.000 0.00 0.00 0.00 2.94
3907 7399 1.273098 ACATGTACTCCCTCCGTTCCT 60.273 52.381 0.00 0.00 0.00 3.36
3908 7400 1.192428 ACATGTACTCCCTCCGTTCC 58.808 55.000 0.00 0.00 0.00 3.62
3909 7401 3.000727 CAAACATGTACTCCCTCCGTTC 58.999 50.000 0.00 0.00 0.00 3.95
3910 7402 2.370849 ACAAACATGTACTCCCTCCGTT 59.629 45.455 0.00 0.00 0.00 4.44
3911 7403 1.975680 ACAAACATGTACTCCCTCCGT 59.024 47.619 0.00 0.00 0.00 4.69
3912 7404 2.762535 ACAAACATGTACTCCCTCCG 57.237 50.000 0.00 0.00 0.00 4.63
3913 7405 5.046520 AGAGTAACAAACATGTACTCCCTCC 60.047 44.000 18.00 0.00 38.24 4.30
3914 7406 6.038997 AGAGTAACAAACATGTACTCCCTC 57.961 41.667 18.00 11.01 38.24 4.30
3915 7407 6.351117 GCTAGAGTAACAAACATGTACTCCCT 60.351 42.308 18.00 7.19 38.24 4.20
3916 7408 5.811100 GCTAGAGTAACAAACATGTACTCCC 59.189 44.000 18.00 7.22 38.24 4.30
3917 7409 6.395629 TGCTAGAGTAACAAACATGTACTCC 58.604 40.000 18.00 7.46 38.24 3.85
3918 7410 7.545965 ACATGCTAGAGTAACAAACATGTACTC 59.454 37.037 15.09 15.09 43.38 2.59
3919 7411 7.386851 ACATGCTAGAGTAACAAACATGTACT 58.613 34.615 0.00 0.00 43.38 2.73
3920 7412 7.596749 ACATGCTAGAGTAACAAACATGTAC 57.403 36.000 0.00 0.00 43.38 2.90
4031 7531 7.136822 AGCTGGTTTAATGTGTATCCTGATA 57.863 36.000 0.00 0.00 0.00 2.15
4190 7690 2.425102 GGTACAGGCCTAGACAGATCCT 60.425 54.545 3.98 0.00 0.00 3.24
5097 8602 4.275936 AGCACAGTTGGTTGTAATGACTTC 59.724 41.667 0.00 0.00 0.00 3.01
5165 8670 8.328758 TGTGGAATGTAAATCTGATTAGGAACT 58.671 33.333 2.85 0.00 46.37 3.01
5240 8746 4.007659 CCATTTTAACAACCTACTCGCCT 58.992 43.478 0.00 0.00 0.00 5.52
5266 8772 6.895782 GATCATTGGATCCCGGGTATTATAA 58.104 40.000 22.86 10.05 43.44 0.98
5294 8800 3.521560 TGGTAAGCACATCGACATTCTC 58.478 45.455 0.00 0.00 0.00 2.87
5436 8942 2.623416 GTGCACAAGTTCTTAAAGGCCT 59.377 45.455 13.17 0.00 0.00 5.19
5483 8989 1.752683 TCTCCTCCGAGTTGCTACTC 58.247 55.000 17.09 17.09 46.01 2.59
5484 8990 2.028130 CATCTCCTCCGAGTTGCTACT 58.972 52.381 0.00 0.00 37.40 2.57
5485 8991 1.751924 ACATCTCCTCCGAGTTGCTAC 59.248 52.381 0.00 0.00 38.78 3.58
5486 8992 2.025155 GACATCTCCTCCGAGTTGCTA 58.975 52.381 0.00 0.00 38.78 3.49
5487 8993 0.820871 GACATCTCCTCCGAGTTGCT 59.179 55.000 0.00 0.00 38.78 3.91
5488 8994 0.179097 GGACATCTCCTCCGAGTTGC 60.179 60.000 0.00 0.00 38.78 4.17
5489 8995 0.461961 GGGACATCTCCTCCGAGTTG 59.538 60.000 0.00 0.00 40.34 3.16
5490 8996 1.038130 CGGGACATCTCCTCCGAGTT 61.038 60.000 0.00 0.00 44.69 3.01
5492 8998 1.152943 TCGGGACATCTCCTCCGAG 60.153 63.158 0.00 0.00 45.37 4.63
5494 9000 0.103208 CTTTCGGGACATCTCCTCCG 59.897 60.000 0.00 0.00 43.42 4.63
5495 9001 0.179070 GCTTTCGGGACATCTCCTCC 60.179 60.000 0.00 0.00 36.68 4.30
5496 9002 0.179070 GGCTTTCGGGACATCTCCTC 60.179 60.000 0.00 0.00 36.68 3.71
5497 9003 1.627297 GGGCTTTCGGGACATCTCCT 61.627 60.000 0.00 0.00 36.68 3.69
5500 9030 0.625849 AATGGGCTTTCGGGACATCT 59.374 50.000 0.00 0.00 0.00 2.90
5501 9031 1.025041 GAATGGGCTTTCGGGACATC 58.975 55.000 0.00 0.00 0.00 3.06
5698 9231 7.230510 TGCCTACAAAATAGAACAACTCAACAT 59.769 33.333 0.00 0.00 0.00 2.71
5753 9286 4.342378 TCGGAGGAGATGTTTTCTGGATAG 59.658 45.833 0.00 0.00 33.74 2.08
5927 9460 9.695526 CTTGAAAATGACCAGAACATCAAAATA 57.304 29.630 0.00 0.00 0.00 1.40
5928 9461 7.658575 CCTTGAAAATGACCAGAACATCAAAAT 59.341 33.333 0.00 0.00 0.00 1.82
5929 9462 6.985645 CCTTGAAAATGACCAGAACATCAAAA 59.014 34.615 0.00 0.00 0.00 2.44
5930 9463 6.514947 CCTTGAAAATGACCAGAACATCAAA 58.485 36.000 0.00 0.00 0.00 2.69
5969 9511 3.672767 AAATGCTCTTTTGCCCTTCTG 57.327 42.857 0.00 0.00 0.00 3.02
6013 9555 4.589798 TCTGCCCTTAGTTGTAACACACTA 59.410 41.667 0.00 0.00 0.00 2.74
6067 9614 9.571810 CACAGAATCTATATAGAGAACATCAGC 57.428 37.037 17.22 0.70 35.50 4.26
6098 9645 2.016318 CATGGAATAAGCCGTCAAGCA 58.984 47.619 0.00 0.00 34.23 3.91
6150 9697 5.036737 GGAACATGCCAAGAATTATGAACG 58.963 41.667 0.00 0.00 0.00 3.95
6153 9700 8.537728 AATAAGGAACATGCCAAGAATTATGA 57.462 30.769 0.00 0.00 0.00 2.15
6324 9871 1.069513 TGTAGGGCGAAATATGGACGG 59.930 52.381 0.00 0.00 0.00 4.79
6545 10092 0.322366 AGCCTGCAGAGAGGAAAAGC 60.322 55.000 17.39 6.49 34.69 3.51
6560 10107 1.078143 GTGCCCTTGATCGAAGCCT 60.078 57.895 0.00 0.00 0.00 4.58
6624 10171 0.398318 ACTTCTGGTCTGAACCTGCC 59.602 55.000 0.00 0.00 46.60 4.85
6805 10354 3.304659 GCTGTACACAACACCTCCAAATG 60.305 47.826 0.00 0.00 33.45 2.32
6851 10400 5.711036 AGTAGCGACCAGATATAAGTAAGGG 59.289 44.000 0.00 0.00 0.00 3.95
6916 10469 4.286297 TGCAGCTAACCTTGTATCACTT 57.714 40.909 0.00 0.00 0.00 3.16
6951 10504 4.765856 ACGTCCTGGATCCATACAGTATAC 59.234 45.833 16.63 4.18 37.01 1.47
6987 10540 7.482654 TCTTGACAAATGAACAGACAGTTAG 57.517 36.000 0.00 0.00 41.51 2.34
7156 13490 4.270245 ACAAAAATGAACCCGCATCAAT 57.730 36.364 0.00 0.00 0.00 2.57
7180 13514 1.482593 CCGCCACAGGAGAGATTACTT 59.517 52.381 0.00 0.00 0.00 2.24
7182 13516 0.530870 GCCGCCACAGGAGAGATTAC 60.531 60.000 0.00 0.00 0.00 1.89
7267 13618 6.323739 GGATTTACAAAGATAGGGGCATTTCA 59.676 38.462 0.00 0.00 0.00 2.69
7268 13619 6.239317 GGGATTTACAAAGATAGGGGCATTTC 60.239 42.308 0.00 0.00 0.00 2.17
7279 13631 9.719355 GGTTAATGTTTTGGGATTTACAAAGAT 57.281 29.630 0.00 0.00 38.84 2.40
7293 13645 2.802787 TGGTGCGGGTTAATGTTTTG 57.197 45.000 0.00 0.00 0.00 2.44
7325 13677 3.012844 AGATTTGGCTAGGGTTTGGGAAT 59.987 43.478 0.00 0.00 0.00 3.01
7405 13757 2.237392 GTGTCATAGGTCCTCTTGGCTT 59.763 50.000 0.00 0.00 0.00 4.35
7483 13835 2.752121 CCATGTCTCGAGTGGATCATG 58.248 52.381 13.91 17.28 37.00 3.07
7586 13938 4.307432 GTTCTCTTCATCCGTGAACTTGA 58.693 43.478 0.00 0.00 39.36 3.02
7708 14060 2.362503 GGGCCCTGTAGGTTTGGC 60.363 66.667 17.04 0.00 43.26 4.52
7713 14065 3.635869 ATGTCCGGGCCCTGTAGGT 62.636 63.158 22.43 0.00 38.26 3.08
7740 14092 4.447342 ATTTCCGGGCTGGGGCTG 62.447 66.667 13.58 0.00 38.76 4.85
7741 14093 4.129148 GATTTCCGGGCTGGGGCT 62.129 66.667 13.58 0.00 38.76 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.