Multiple sequence alignment - TraesCS5D01G133600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G133600 chr5D 100.000 6319 0 0 1 6319 213319435 213325753 0.000000e+00 11670.0
1 TraesCS5D01G133600 chr5A 94.387 5879 177 36 440 6261 277332387 277338169 0.000000e+00 8887.0
2 TraesCS5D01G133600 chr5A 86.976 453 42 12 1 449 277324137 277324576 1.580000e-135 494.0
3 TraesCS5D01G133600 chr5B 95.792 4016 94 22 1677 5665 227639971 227643938 0.000000e+00 6410.0
4 TraesCS5D01G133600 chr5B 91.183 1395 72 21 302 1681 227638546 227639904 0.000000e+00 1847.0
5 TraesCS5D01G133600 chr5B 92.000 375 22 4 5662 6031 227644194 227644565 2.610000e-143 520.0
6 TraesCS5D01G133600 chr5B 86.689 293 33 3 6028 6319 227645323 227645610 2.840000e-83 320.0
7 TraesCS5D01G133600 chr5B 76.724 232 32 12 4750 4969 580113768 580113989 6.700000e-20 110.0
8 TraesCS5D01G133600 chr2A 83.784 185 26 3 3 186 598643111 598642930 8.420000e-39 172.0
9 TraesCS5D01G133600 chr2A 82.000 200 30 5 7 204 17240377 17240182 1.410000e-36 165.0
10 TraesCS5D01G133600 chr7A 84.659 176 17 5 4553 4724 672454490 672454321 3.920000e-37 167.0
11 TraesCS5D01G133600 chr7B 83.871 186 13 5 4550 4724 146192388 146192567 1.820000e-35 161.0
12 TraesCS5D01G133600 chr3D 85.093 161 21 2 1 160 75083864 75084022 1.820000e-35 161.0
13 TraesCS5D01G133600 chr6D 83.516 182 14 6 4553 4724 385913851 385914026 8.480000e-34 156.0
14 TraesCS5D01G133600 chr6D 83.125 160 14 9 4813 4969 159788565 159788416 3.970000e-27 134.0
15 TraesCS5D01G133600 chr6D 79.894 189 19 10 4548 4724 2737544 2737725 3.090000e-23 121.0
16 TraesCS5D01G133600 chr4B 79.638 221 31 8 4752 4969 46968187 46968396 5.100000e-31 147.0
17 TraesCS5D01G133600 chr4B 82.418 182 15 5 4553 4724 189237372 189237198 6.600000e-30 143.0
18 TraesCS5D01G133600 chr3B 84.507 142 20 1 1 142 120569701 120569840 8.540000e-29 139.0
19 TraesCS5D01G133600 chr2B 82.911 158 16 5 4814 4969 512695557 512695705 1.430000e-26 132.0
20 TraesCS5D01G133600 chr2B 80.645 186 18 8 4550 4724 668844479 668844657 1.850000e-25 128.0
21 TraesCS5D01G133600 chr1A 80.769 182 19 4 4553 4724 547422170 547422345 1.850000e-25 128.0
22 TraesCS5D01G133600 chr6B 80.226 177 17 8 4549 4714 531936707 531936538 4.000000e-22 117.0
23 TraesCS5D01G133600 chrUn 81.013 158 18 7 4814 4969 289210553 289210700 1.440000e-21 115.0
24 TraesCS5D01G133600 chrUn 81.013 158 18 7 4814 4969 289216465 289216612 1.440000e-21 115.0
25 TraesCS5D01G133600 chrUn 81.013 158 18 7 4814 4969 356421901 356421754 1.440000e-21 115.0
26 TraesCS5D01G133600 chr4A 79.503 161 18 8 4813 4969 60093226 60093077 4.030000e-17 100.0
27 TraesCS5D01G133600 chr7D 87.179 78 9 1 4750 4827 1941421 1941345 3.140000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G133600 chr5D 213319435 213325753 6318 False 11670.00 11670 100.000 1 6319 1 chr5D.!!$F1 6318
1 TraesCS5D01G133600 chr5A 277332387 277338169 5782 False 8887.00 8887 94.387 440 6261 1 chr5A.!!$F2 5821
2 TraesCS5D01G133600 chr5B 227638546 227645610 7064 False 2274.25 6410 91.416 302 6319 4 chr5B.!!$F2 6017

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
216 217 0.033920 TGCCGGATGATGATCTTCGG 59.966 55.000 5.05 13.98 36.81 4.30 F
217 218 0.034059 GCCGGATGATGATCTTCGGT 59.966 55.000 5.05 0.00 36.38 4.69 F
254 255 0.102300 CTGATCCGTGTGCGTGGATA 59.898 55.000 0.00 0.00 44.92 2.59 F
258 259 0.102300 TCCGTGTGCGTGGATAGATG 59.898 55.000 0.00 0.00 36.15 2.90 F
1248 1284 0.179092 GCTTATAGGACGCAACCGGT 60.179 55.000 0.00 0.00 39.22 5.28 F
1251 1287 1.027357 TATAGGACGCAACCGGTCTC 58.973 55.000 8.04 0.94 39.22 3.36 F
1637 1678 1.748122 AGCTGCTCTCAATTGGCGG 60.748 57.895 5.42 7.57 35.66 6.13 F
3218 3344 0.183492 AAGCCCTCACACTGCAAGAA 59.817 50.000 0.00 0.00 37.43 2.52 F
4629 4763 0.114954 ACAGTGGGCATGGGTGAAAT 59.885 50.000 0.00 0.00 0.00 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1228 1263 0.179094 CCGGTTGCGTCCTATAAGCA 60.179 55.000 0.00 0.0 41.06 3.91 R
1611 1652 0.250467 TTGAGAGCAGCTGGGAACAC 60.250 55.000 17.12 0.0 35.60 3.32 R
1806 1917 0.740149 CTGCCTGTTTTCACACAGCA 59.260 50.000 0.00 0.0 42.63 4.41 R
1807 1918 1.024271 TCTGCCTGTTTTCACACAGC 58.976 50.000 0.00 0.0 42.63 4.40 R
3185 3311 2.975489 GAGGGCTTCAATATCTCCCTGA 59.025 50.000 2.42 0.0 46.71 3.86 R
3218 3344 6.127140 ACCTTATTTGTCCGTCTAAGCTATGT 60.127 38.462 0.00 0.0 0.00 2.29 R
3494 3620 5.009710 AGCATGGCAAAGACTTGATATCATG 59.990 40.000 15.20 15.2 34.14 3.07 R
4914 5070 0.324275 TTCTGCCCAAAGCCATACCC 60.324 55.000 0.00 0.0 42.71 3.69 R
6268 7453 0.038166 TTCAGCCATGTTCTCCACCC 59.962 55.000 0.00 0.0 0.00 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 7.719483 ACATGATCTGTCAATGAAAAACTTGT 58.281 30.769 0.00 0.00 38.01 3.16
35 36 8.199449 ACATGATCTGTCAATGAAAAACTTGTT 58.801 29.630 0.00 0.00 38.01 2.83
36 37 7.990541 TGATCTGTCAATGAAAAACTTGTTG 57.009 32.000 0.00 0.00 0.00 3.33
37 38 6.979817 TGATCTGTCAATGAAAAACTTGTTGG 59.020 34.615 0.00 0.00 0.00 3.77
38 39 6.522625 TCTGTCAATGAAAAACTTGTTGGA 57.477 33.333 0.00 0.00 0.00 3.53
39 40 6.329496 TCTGTCAATGAAAAACTTGTTGGAC 58.671 36.000 0.00 0.00 0.00 4.02
40 41 6.030548 TGTCAATGAAAAACTTGTTGGACA 57.969 33.333 0.00 0.00 0.00 4.02
41 42 6.638610 TGTCAATGAAAAACTTGTTGGACAT 58.361 32.000 0.00 0.00 0.00 3.06
42 43 6.756074 TGTCAATGAAAAACTTGTTGGACATC 59.244 34.615 0.00 0.00 0.00 3.06
43 44 6.980397 GTCAATGAAAAACTTGTTGGACATCT 59.020 34.615 0.00 0.00 0.00 2.90
44 45 6.979817 TCAATGAAAAACTTGTTGGACATCTG 59.020 34.615 0.00 0.00 0.00 2.90
45 46 5.261209 TGAAAAACTTGTTGGACATCTGG 57.739 39.130 0.00 0.00 0.00 3.86
46 47 4.709397 TGAAAAACTTGTTGGACATCTGGT 59.291 37.500 0.00 0.00 0.00 4.00
47 48 5.186797 TGAAAAACTTGTTGGACATCTGGTT 59.813 36.000 0.00 0.00 0.00 3.67
48 49 5.675684 AAAACTTGTTGGACATCTGGTTT 57.324 34.783 0.00 0.00 0.00 3.27
49 50 6.783708 AAAACTTGTTGGACATCTGGTTTA 57.216 33.333 0.00 0.00 0.00 2.01
50 51 6.976934 AAACTTGTTGGACATCTGGTTTAT 57.023 33.333 0.00 0.00 0.00 1.40
51 52 6.575162 AACTTGTTGGACATCTGGTTTATC 57.425 37.500 0.00 0.00 0.00 1.75
52 53 5.880901 ACTTGTTGGACATCTGGTTTATCT 58.119 37.500 0.00 0.00 0.00 1.98
53 54 6.306987 ACTTGTTGGACATCTGGTTTATCTT 58.693 36.000 0.00 0.00 0.00 2.40
54 55 6.207417 ACTTGTTGGACATCTGGTTTATCTTG 59.793 38.462 0.00 0.00 0.00 3.02
55 56 5.630121 TGTTGGACATCTGGTTTATCTTGT 58.370 37.500 0.00 0.00 0.00 3.16
56 57 5.705441 TGTTGGACATCTGGTTTATCTTGTC 59.295 40.000 0.00 0.00 34.24 3.18
57 58 4.503910 TGGACATCTGGTTTATCTTGTCG 58.496 43.478 0.00 0.00 35.48 4.35
58 59 4.221924 TGGACATCTGGTTTATCTTGTCGA 59.778 41.667 0.00 0.00 35.48 4.20
59 60 5.175859 GGACATCTGGTTTATCTTGTCGAA 58.824 41.667 0.00 0.00 35.48 3.71
60 61 5.817816 GGACATCTGGTTTATCTTGTCGAAT 59.182 40.000 0.00 0.00 35.48 3.34
61 62 6.316390 GGACATCTGGTTTATCTTGTCGAATT 59.684 38.462 0.00 0.00 35.48 2.17
62 63 7.148239 GGACATCTGGTTTATCTTGTCGAATTT 60.148 37.037 0.00 0.00 35.48 1.82
63 64 7.530010 ACATCTGGTTTATCTTGTCGAATTTG 58.470 34.615 0.00 0.00 0.00 2.32
64 65 7.390440 ACATCTGGTTTATCTTGTCGAATTTGA 59.610 33.333 0.00 0.00 0.00 2.69
65 66 7.364522 TCTGGTTTATCTTGTCGAATTTGAG 57.635 36.000 0.00 0.00 0.00 3.02
66 67 7.158697 TCTGGTTTATCTTGTCGAATTTGAGA 58.841 34.615 0.00 0.00 0.00 3.27
67 68 7.117812 TCTGGTTTATCTTGTCGAATTTGAGAC 59.882 37.037 0.00 0.00 37.85 3.36
68 69 6.708502 TGGTTTATCTTGTCGAATTTGAGACA 59.291 34.615 0.00 2.14 44.57 3.41
69 70 7.390440 TGGTTTATCTTGTCGAATTTGAGACAT 59.610 33.333 11.38 2.34 45.40 3.06
70 71 8.237267 GGTTTATCTTGTCGAATTTGAGACATT 58.763 33.333 11.38 5.15 45.40 2.71
71 72 9.055248 GTTTATCTTGTCGAATTTGAGACATTG 57.945 33.333 11.38 8.77 45.40 2.82
72 73 6.808008 ATCTTGTCGAATTTGAGACATTGT 57.192 33.333 11.38 0.00 45.40 2.71
73 74 6.618287 TCTTGTCGAATTTGAGACATTGTT 57.382 33.333 11.38 0.00 45.40 2.83
74 75 6.429624 TCTTGTCGAATTTGAGACATTGTTG 58.570 36.000 11.38 3.73 45.40 3.33
75 76 5.749596 TGTCGAATTTGAGACATTGTTGT 57.250 34.783 0.00 0.00 41.81 3.32
76 77 6.852858 TGTCGAATTTGAGACATTGTTGTA 57.147 33.333 0.00 0.00 41.81 2.41
77 78 6.655062 TGTCGAATTTGAGACATTGTTGTAC 58.345 36.000 0.00 0.00 41.81 2.90
78 79 6.077838 GTCGAATTTGAGACATTGTTGTACC 58.922 40.000 0.00 0.00 35.79 3.34
79 80 5.760743 TCGAATTTGAGACATTGTTGTACCA 59.239 36.000 0.00 0.00 35.79 3.25
80 81 6.429692 TCGAATTTGAGACATTGTTGTACCAT 59.570 34.615 0.00 0.00 35.79 3.55
81 82 7.604545 TCGAATTTGAGACATTGTTGTACCATA 59.395 33.333 0.00 0.00 35.79 2.74
82 83 7.904977 CGAATTTGAGACATTGTTGTACCATAG 59.095 37.037 0.00 0.00 35.79 2.23
83 84 8.862325 AATTTGAGACATTGTTGTACCATAGA 57.138 30.769 0.00 0.00 35.79 1.98
84 85 7.667043 TTTGAGACATTGTTGTACCATAGAC 57.333 36.000 0.00 0.00 35.79 2.59
85 86 6.605471 TGAGACATTGTTGTACCATAGACT 57.395 37.500 0.00 0.00 35.79 3.24
86 87 7.004555 TGAGACATTGTTGTACCATAGACTT 57.995 36.000 0.00 0.00 35.79 3.01
87 88 8.129496 TGAGACATTGTTGTACCATAGACTTA 57.871 34.615 0.00 0.00 35.79 2.24
88 89 8.758829 TGAGACATTGTTGTACCATAGACTTAT 58.241 33.333 0.00 0.00 35.79 1.73
89 90 9.601217 GAGACATTGTTGTACCATAGACTTATT 57.399 33.333 0.00 0.00 35.79 1.40
90 91 9.959721 AGACATTGTTGTACCATAGACTTATTT 57.040 29.630 0.00 0.00 35.79 1.40
91 92 9.988350 GACATTGTTGTACCATAGACTTATTTG 57.012 33.333 0.00 0.00 35.79 2.32
92 93 9.515226 ACATTGTTGTACCATAGACTTATTTGT 57.485 29.630 0.00 0.00 33.16 2.83
114 115 9.941325 TTTGTATTCAATTTATGGATGCTTTGT 57.059 25.926 0.00 0.00 31.29 2.83
115 116 8.929827 TGTATTCAATTTATGGATGCTTTGTG 57.070 30.769 0.00 0.00 31.29 3.33
116 117 6.913873 ATTCAATTTATGGATGCTTTGTGC 57.086 33.333 0.00 0.00 43.25 4.57
117 118 5.664294 TCAATTTATGGATGCTTTGTGCT 57.336 34.783 0.00 0.00 43.37 4.40
118 119 6.772360 TCAATTTATGGATGCTTTGTGCTA 57.228 33.333 0.00 0.00 43.37 3.49
119 120 7.350744 TCAATTTATGGATGCTTTGTGCTAT 57.649 32.000 0.00 0.00 43.37 2.97
120 121 7.784037 TCAATTTATGGATGCTTTGTGCTATT 58.216 30.769 0.00 0.00 43.37 1.73
121 122 8.259411 TCAATTTATGGATGCTTTGTGCTATTT 58.741 29.630 0.00 0.00 43.37 1.40
122 123 8.885722 CAATTTATGGATGCTTTGTGCTATTTT 58.114 29.630 0.00 0.00 43.37 1.82
123 124 9.452287 AATTTATGGATGCTTTGTGCTATTTTT 57.548 25.926 0.00 0.00 43.37 1.94
146 147 8.741101 TTTTATCCGAGTTTTGATGAACATTG 57.259 30.769 0.00 0.00 31.94 2.82
147 148 4.764679 TCCGAGTTTTGATGAACATTGG 57.235 40.909 0.00 0.00 31.94 3.16
148 149 3.057596 TCCGAGTTTTGATGAACATTGGC 60.058 43.478 0.00 0.00 31.94 4.52
149 150 3.244976 CGAGTTTTGATGAACATTGGCC 58.755 45.455 0.00 0.00 31.94 5.36
150 151 3.244976 GAGTTTTGATGAACATTGGCCG 58.755 45.455 0.00 0.00 31.94 6.13
151 152 2.029110 AGTTTTGATGAACATTGGCCGG 60.029 45.455 0.00 0.00 31.94 6.13
152 153 1.626686 TTTGATGAACATTGGCCGGT 58.373 45.000 1.90 0.00 0.00 5.28
153 154 1.173043 TTGATGAACATTGGCCGGTC 58.827 50.000 0.00 0.00 0.00 4.79
154 155 0.327924 TGATGAACATTGGCCGGTCT 59.672 50.000 7.97 0.00 0.00 3.85
155 156 0.734889 GATGAACATTGGCCGGTCTG 59.265 55.000 7.97 0.00 0.00 3.51
156 157 1.315257 ATGAACATTGGCCGGTCTGC 61.315 55.000 7.97 0.00 0.00 4.26
157 158 1.971167 GAACATTGGCCGGTCTGCA 60.971 57.895 7.97 0.00 0.00 4.41
158 159 1.304381 AACATTGGCCGGTCTGCAT 60.304 52.632 7.97 0.00 0.00 3.96
159 160 1.597797 AACATTGGCCGGTCTGCATG 61.598 55.000 7.97 9.72 0.00 4.06
160 161 1.750018 CATTGGCCGGTCTGCATGA 60.750 57.895 7.97 0.00 0.00 3.07
161 162 1.001020 ATTGGCCGGTCTGCATGAA 60.001 52.632 7.97 0.00 0.00 2.57
162 163 0.396139 ATTGGCCGGTCTGCATGAAT 60.396 50.000 7.97 0.00 0.00 2.57
163 164 0.611618 TTGGCCGGTCTGCATGAATT 60.612 50.000 7.97 0.00 0.00 2.17
164 165 0.611618 TGGCCGGTCTGCATGAATTT 60.612 50.000 7.97 0.00 0.00 1.82
165 166 0.101219 GGCCGGTCTGCATGAATTTC 59.899 55.000 1.90 0.00 0.00 2.17
166 167 1.098050 GCCGGTCTGCATGAATTTCT 58.902 50.000 1.90 0.00 0.00 2.52
167 168 1.474077 GCCGGTCTGCATGAATTTCTT 59.526 47.619 1.90 0.00 0.00 2.52
168 169 2.478539 GCCGGTCTGCATGAATTTCTTC 60.479 50.000 1.90 0.00 0.00 2.87
169 170 2.223112 CCGGTCTGCATGAATTTCTTCG 60.223 50.000 0.00 0.00 33.86 3.79
170 171 2.416547 CGGTCTGCATGAATTTCTTCGT 59.583 45.455 0.00 0.00 33.86 3.85
171 172 3.484229 CGGTCTGCATGAATTTCTTCGTC 60.484 47.826 0.00 0.00 33.86 4.20
172 173 3.686726 GGTCTGCATGAATTTCTTCGTCT 59.313 43.478 0.00 0.00 33.86 4.18
173 174 4.870426 GGTCTGCATGAATTTCTTCGTCTA 59.130 41.667 0.00 0.00 33.86 2.59
174 175 5.006165 GGTCTGCATGAATTTCTTCGTCTAG 59.994 44.000 0.00 0.00 33.86 2.43
175 176 5.578727 GTCTGCATGAATTTCTTCGTCTAGT 59.421 40.000 0.00 0.00 33.86 2.57
176 177 6.091441 GTCTGCATGAATTTCTTCGTCTAGTT 59.909 38.462 0.00 0.00 33.86 2.24
177 178 6.650807 TCTGCATGAATTTCTTCGTCTAGTTT 59.349 34.615 0.00 0.00 33.86 2.66
178 179 7.817478 TCTGCATGAATTTCTTCGTCTAGTTTA 59.183 33.333 0.00 0.00 33.86 2.01
179 180 8.317891 TGCATGAATTTCTTCGTCTAGTTTAA 57.682 30.769 0.00 0.00 33.86 1.52
180 181 8.779303 TGCATGAATTTCTTCGTCTAGTTTAAA 58.221 29.630 0.00 0.00 33.86 1.52
181 182 9.774742 GCATGAATTTCTTCGTCTAGTTTAAAT 57.225 29.630 0.00 0.00 33.86 1.40
183 184 9.774742 ATGAATTTCTTCGTCTAGTTTAAATGC 57.225 29.630 0.00 0.00 33.86 3.56
184 185 7.955324 TGAATTTCTTCGTCTAGTTTAAATGCG 59.045 33.333 0.00 0.00 33.86 4.73
185 186 5.773239 TTCTTCGTCTAGTTTAAATGCGG 57.227 39.130 0.00 0.00 0.00 5.69
186 187 3.615496 TCTTCGTCTAGTTTAAATGCGGC 59.385 43.478 0.00 0.00 0.00 6.53
187 188 3.241067 TCGTCTAGTTTAAATGCGGCT 57.759 42.857 0.00 0.00 0.00 5.52
188 189 3.592059 TCGTCTAGTTTAAATGCGGCTT 58.408 40.909 0.00 0.00 0.00 4.35
189 190 3.369756 TCGTCTAGTTTAAATGCGGCTTG 59.630 43.478 0.00 0.00 0.00 4.01
190 191 3.369756 CGTCTAGTTTAAATGCGGCTTGA 59.630 43.478 0.00 0.00 0.00 3.02
191 192 4.142988 CGTCTAGTTTAAATGCGGCTTGAA 60.143 41.667 0.00 0.00 0.00 2.69
192 193 5.615984 CGTCTAGTTTAAATGCGGCTTGAAA 60.616 40.000 0.00 0.00 0.00 2.69
193 194 6.322491 GTCTAGTTTAAATGCGGCTTGAAAT 58.678 36.000 0.00 0.00 0.00 2.17
194 195 7.469260 GTCTAGTTTAAATGCGGCTTGAAATA 58.531 34.615 0.00 0.00 0.00 1.40
195 196 7.428472 GTCTAGTTTAAATGCGGCTTGAAATAC 59.572 37.037 0.00 0.00 0.00 1.89
196 197 6.019779 AGTTTAAATGCGGCTTGAAATACA 57.980 33.333 0.00 0.00 0.00 2.29
197 198 6.630071 AGTTTAAATGCGGCTTGAAATACAT 58.370 32.000 0.00 0.00 0.00 2.29
198 199 6.531240 AGTTTAAATGCGGCTTGAAATACATG 59.469 34.615 0.00 0.00 0.00 3.21
199 200 2.497107 ATGCGGCTTGAAATACATGC 57.503 45.000 0.00 0.00 45.15 4.06
205 206 3.004024 GCTTGAAATACATGCCGGATG 57.996 47.619 5.05 9.09 41.72 3.51
206 207 2.618241 GCTTGAAATACATGCCGGATGA 59.382 45.455 5.05 0.00 41.72 2.92
207 208 3.254166 GCTTGAAATACATGCCGGATGAT 59.746 43.478 5.05 0.00 41.72 2.45
208 209 4.790878 CTTGAAATACATGCCGGATGATG 58.209 43.478 5.05 6.29 35.80 3.07
209 210 4.084011 TGAAATACATGCCGGATGATGA 57.916 40.909 5.05 0.00 35.80 2.92
210 211 4.654915 TGAAATACATGCCGGATGATGAT 58.345 39.130 5.05 0.94 35.80 2.45
211 212 4.696877 TGAAATACATGCCGGATGATGATC 59.303 41.667 5.05 6.60 35.80 2.92
212 213 4.564782 AATACATGCCGGATGATGATCT 57.435 40.909 5.05 0.00 35.80 2.75
213 214 2.945080 ACATGCCGGATGATGATCTT 57.055 45.000 5.05 0.00 35.80 2.40
214 215 2.775890 ACATGCCGGATGATGATCTTC 58.224 47.619 5.05 1.67 35.80 2.87
215 216 1.730612 CATGCCGGATGATGATCTTCG 59.269 52.381 5.05 0.21 33.31 3.79
216 217 0.033920 TGCCGGATGATGATCTTCGG 59.966 55.000 5.05 13.98 36.81 4.30
217 218 0.034059 GCCGGATGATGATCTTCGGT 59.966 55.000 5.05 0.00 36.38 4.69
218 219 1.272490 GCCGGATGATGATCTTCGGTA 59.728 52.381 5.05 0.00 36.38 4.02
219 220 2.093973 GCCGGATGATGATCTTCGGTAT 60.094 50.000 5.05 0.00 36.38 2.73
220 221 3.130516 GCCGGATGATGATCTTCGGTATA 59.869 47.826 5.05 0.00 36.38 1.47
221 222 4.202161 GCCGGATGATGATCTTCGGTATAT 60.202 45.833 5.05 0.00 36.38 0.86
222 223 5.682471 GCCGGATGATGATCTTCGGTATATT 60.682 44.000 5.05 0.00 36.38 1.28
223 224 6.461092 GCCGGATGATGATCTTCGGTATATTA 60.461 42.308 5.05 0.00 36.38 0.98
224 225 7.489160 CCGGATGATGATCTTCGGTATATTAA 58.511 38.462 0.00 0.00 31.97 1.40
225 226 8.144478 CCGGATGATGATCTTCGGTATATTAAT 58.856 37.037 0.00 0.00 31.97 1.40
226 227 8.972349 CGGATGATGATCTTCGGTATATTAATG 58.028 37.037 0.00 0.00 0.00 1.90
227 228 9.823647 GGATGATGATCTTCGGTATATTAATGT 57.176 33.333 0.00 0.00 0.00 2.71
230 231 9.860898 TGATGATCTTCGGTATATTAATGTCTG 57.139 33.333 0.00 0.00 0.00 3.51
231 232 8.709386 ATGATCTTCGGTATATTAATGTCTGC 57.291 34.615 0.00 0.00 0.00 4.26
232 233 7.666623 TGATCTTCGGTATATTAATGTCTGCA 58.333 34.615 0.00 0.00 0.00 4.41
233 234 7.814587 TGATCTTCGGTATATTAATGTCTGCAG 59.185 37.037 7.63 7.63 0.00 4.41
234 235 6.455647 TCTTCGGTATATTAATGTCTGCAGG 58.544 40.000 15.13 0.00 0.00 4.85
235 236 4.566004 TCGGTATATTAATGTCTGCAGGC 58.434 43.478 12.53 12.53 0.00 4.85
236 237 4.283467 TCGGTATATTAATGTCTGCAGGCT 59.717 41.667 20.86 2.03 0.00 4.58
237 238 4.389992 CGGTATATTAATGTCTGCAGGCTG 59.610 45.833 20.86 10.94 0.00 4.85
238 239 5.551233 GGTATATTAATGTCTGCAGGCTGA 58.449 41.667 20.86 0.00 0.00 4.26
239 240 6.176183 GGTATATTAATGTCTGCAGGCTGAT 58.824 40.000 20.86 10.21 0.00 2.90
240 241 6.314896 GGTATATTAATGTCTGCAGGCTGATC 59.685 42.308 20.86 1.25 0.00 2.92
241 242 2.627515 TAATGTCTGCAGGCTGATCC 57.372 50.000 20.86 0.40 0.00 3.36
242 243 0.463295 AATGTCTGCAGGCTGATCCG 60.463 55.000 20.86 2.48 40.77 4.18
243 244 1.620739 ATGTCTGCAGGCTGATCCGT 61.621 55.000 20.86 0.62 40.77 4.69
244 245 1.812922 GTCTGCAGGCTGATCCGTG 60.813 63.158 20.86 0.71 40.77 4.94
245 246 2.267006 CTGCAGGCTGATCCGTGT 59.733 61.111 20.86 0.00 40.77 4.49
246 247 2.046988 TGCAGGCTGATCCGTGTG 60.047 61.111 20.86 0.00 40.77 3.82
247 248 3.503363 GCAGGCTGATCCGTGTGC 61.503 66.667 20.86 0.00 40.77 4.57
248 249 3.190849 CAGGCTGATCCGTGTGCG 61.191 66.667 9.42 0.00 40.77 5.34
249 250 3.695606 AGGCTGATCCGTGTGCGT 61.696 61.111 0.00 0.00 40.77 5.24
250 251 3.490759 GGCTGATCCGTGTGCGTG 61.491 66.667 0.00 0.00 36.15 5.34
251 252 3.490759 GCTGATCCGTGTGCGTGG 61.491 66.667 0.00 0.00 36.15 4.94
252 253 2.261361 CTGATCCGTGTGCGTGGA 59.739 61.111 0.00 0.00 38.95 4.02
254 255 0.102300 CTGATCCGTGTGCGTGGATA 59.898 55.000 0.00 0.00 44.92 2.59
255 256 0.102300 TGATCCGTGTGCGTGGATAG 59.898 55.000 0.00 0.00 44.92 2.08
256 257 0.384309 GATCCGTGTGCGTGGATAGA 59.616 55.000 0.00 0.00 44.92 1.98
257 258 1.000163 GATCCGTGTGCGTGGATAGAT 60.000 52.381 0.00 0.00 44.92 1.98
258 259 0.102300 TCCGTGTGCGTGGATAGATG 59.898 55.000 0.00 0.00 36.15 2.90
259 260 0.875908 CCGTGTGCGTGGATAGATGG 60.876 60.000 0.00 0.00 36.15 3.51
260 261 1.490693 CGTGTGCGTGGATAGATGGC 61.491 60.000 0.00 0.00 0.00 4.40
261 262 1.227234 TGTGCGTGGATAGATGGCG 60.227 57.895 0.00 0.00 0.00 5.69
262 263 1.956170 GTGCGTGGATAGATGGCGG 60.956 63.158 0.00 0.00 0.00 6.13
263 264 2.131067 TGCGTGGATAGATGGCGGA 61.131 57.895 0.00 0.00 0.00 5.54
264 265 1.373497 GCGTGGATAGATGGCGGAG 60.373 63.158 0.00 0.00 0.00 4.63
284 285 3.705043 GCAAATTTGCGATCCTGAGAT 57.295 42.857 26.15 0.00 45.11 2.75
285 286 3.369385 GCAAATTTGCGATCCTGAGATG 58.631 45.455 26.15 0.00 45.11 2.90
286 287 3.369385 CAAATTTGCGATCCTGAGATGC 58.631 45.455 5.01 0.00 30.90 3.91
287 288 1.602311 ATTTGCGATCCTGAGATGCC 58.398 50.000 0.00 0.00 30.90 4.40
288 289 0.464373 TTTGCGATCCTGAGATGCCC 60.464 55.000 0.00 0.00 30.90 5.36
289 290 1.340399 TTGCGATCCTGAGATGCCCT 61.340 55.000 0.00 0.00 30.90 5.19
290 291 0.469892 TGCGATCCTGAGATGCCCTA 60.470 55.000 0.00 0.00 30.90 3.53
291 292 0.681733 GCGATCCTGAGATGCCCTAA 59.318 55.000 0.00 0.00 30.90 2.69
292 293 1.337635 GCGATCCTGAGATGCCCTAAG 60.338 57.143 0.00 0.00 30.90 2.18
293 294 1.337635 CGATCCTGAGATGCCCTAAGC 60.338 57.143 0.00 0.00 44.14 3.09
306 307 3.278574 GCCCTAAGCATGTTACATGTCA 58.721 45.455 23.88 10.37 42.97 3.58
311 312 2.426522 AGCATGTTACATGTCAAGCGT 58.573 42.857 23.88 1.16 34.22 5.07
348 349 3.747976 GCGCCGGCTTGAACCAAT 61.748 61.111 26.68 0.00 35.83 3.16
349 350 2.485122 CGCCGGCTTGAACCAATC 59.515 61.111 26.68 0.00 0.00 2.67
561 566 4.466370 ACGTCTCACTTTTATCTCCCATGA 59.534 41.667 0.00 0.00 0.00 3.07
562 567 4.806247 CGTCTCACTTTTATCTCCCATGAC 59.194 45.833 0.00 0.00 0.00 3.06
563 568 5.624509 CGTCTCACTTTTATCTCCCATGACA 60.625 44.000 0.00 0.00 0.00 3.58
564 569 5.582665 GTCTCACTTTTATCTCCCATGACAC 59.417 44.000 0.00 0.00 0.00 3.67
570 575 6.823689 ACTTTTATCTCCCATGACACATACAC 59.176 38.462 0.00 0.00 0.00 2.90
609 614 5.743398 CACATGACGTGTCAAGAATGTTTTT 59.257 36.000 11.73 0.00 43.58 1.94
661 671 2.998670 CACTCTTGTTCGATGCTCACAT 59.001 45.455 0.00 0.00 39.98 3.21
664 674 4.516698 ACTCTTGTTCGATGCTCACATTTT 59.483 37.500 0.00 0.00 36.35 1.82
681 691 5.009410 CACATTTTTCTCAGTGAAGAAGCCT 59.991 40.000 0.00 0.00 36.66 4.58
682 692 5.595952 ACATTTTTCTCAGTGAAGAAGCCTT 59.404 36.000 0.00 0.00 36.66 4.35
683 693 6.097412 ACATTTTTCTCAGTGAAGAAGCCTTT 59.903 34.615 0.00 0.00 36.66 3.11
1223 1258 2.210116 TCACTGTTTCGGTTCTTCAGC 58.790 47.619 0.00 0.00 0.00 4.26
1228 1263 2.224523 TGTTTCGGTTCTTCAGCTGGAT 60.225 45.455 15.13 0.00 0.00 3.41
1244 1280 2.802816 CTGGATGCTTATAGGACGCAAC 59.197 50.000 0.00 0.00 37.20 4.17
1245 1281 2.143925 GGATGCTTATAGGACGCAACC 58.856 52.381 0.00 0.00 38.99 3.77
1246 1282 1.792949 GATGCTTATAGGACGCAACCG 59.207 52.381 0.00 0.00 37.20 4.44
1247 1283 0.179094 TGCTTATAGGACGCAACCGG 60.179 55.000 0.00 0.00 39.22 5.28
1248 1284 0.179092 GCTTATAGGACGCAACCGGT 60.179 55.000 0.00 0.00 39.22 5.28
1249 1285 1.849097 CTTATAGGACGCAACCGGTC 58.151 55.000 8.04 0.00 39.22 4.79
1250 1286 1.407979 CTTATAGGACGCAACCGGTCT 59.592 52.381 8.04 1.10 39.22 3.85
1251 1287 1.027357 TATAGGACGCAACCGGTCTC 58.973 55.000 8.04 0.94 39.22 3.36
1252 1288 2.001361 ATAGGACGCAACCGGTCTCG 62.001 60.000 21.93 21.93 39.22 4.04
1253 1289 4.353437 GGACGCAACCGGTCTCGT 62.353 66.667 27.06 27.06 39.22 4.18
1296 1332 2.584418 CTCATCTGAGCCACCGCG 60.584 66.667 0.00 0.00 41.18 6.46
1305 1341 4.203076 GCCACCGCGGTAGATCGT 62.203 66.667 33.70 2.52 36.97 3.73
1445 1483 2.555547 GGCGCAGTCCAACAAAGCT 61.556 57.895 10.83 0.00 0.00 3.74
1588 1629 5.420725 ACCTAGTCACACTTTCATATGCA 57.579 39.130 0.00 0.00 0.00 3.96
1611 1652 6.169094 CACCATCCTCCTACAAAGCATATAG 58.831 44.000 0.00 0.00 0.00 1.31
1637 1678 1.748122 AGCTGCTCTCAATTGGCGG 60.748 57.895 5.42 7.57 35.66 6.13
1656 1697 2.677902 CGGCTTACTTCATTCTGCTCCA 60.678 50.000 0.00 0.00 0.00 3.86
1732 1843 4.522789 TGAAAACCCCAAAGCTAAGACATC 59.477 41.667 0.00 0.00 0.00 3.06
1779 1890 6.371548 GGTGCTGACTATGTTATGAGTTTCAA 59.628 38.462 0.00 0.00 0.00 2.69
1780 1891 7.413438 GGTGCTGACTATGTTATGAGTTTCAAG 60.413 40.741 0.00 0.00 0.00 3.02
1788 1899 9.612620 CTATGTTATGAGTTTCAAGTTTCAACC 57.387 33.333 0.00 0.00 0.00 3.77
1789 1900 7.639113 TGTTATGAGTTTCAAGTTTCAACCT 57.361 32.000 0.00 0.00 0.00 3.50
1790 1901 8.062065 TGTTATGAGTTTCAAGTTTCAACCTT 57.938 30.769 0.00 0.00 0.00 3.50
1791 1902 8.188139 TGTTATGAGTTTCAAGTTTCAACCTTC 58.812 33.333 0.00 0.00 0.00 3.46
1792 1903 6.773976 ATGAGTTTCAAGTTTCAACCTTCA 57.226 33.333 0.00 0.00 0.00 3.02
1793 1904 6.582677 TGAGTTTCAAGTTTCAACCTTCAA 57.417 33.333 0.00 0.00 0.00 2.69
1806 1917 5.650283 TCAACCTTCAACTAAATTCCCCAT 58.350 37.500 0.00 0.00 0.00 4.00
1807 1918 5.480073 TCAACCTTCAACTAAATTCCCCATG 59.520 40.000 0.00 0.00 0.00 3.66
2211 2337 5.468592 TCATTAACGCTTTTGATGCAATGT 58.531 33.333 0.00 0.00 0.00 2.71
2290 2416 5.991606 CACAACAGAGAAGACAATGAGGTAA 59.008 40.000 0.00 0.00 0.00 2.85
2464 2590 3.679389 GGTGAGTGATGTGGATTCAGTT 58.321 45.455 0.00 0.00 0.00 3.16
2496 2622 9.246670 TGAATCATATTCATCTTTGACCAAGTT 57.753 29.630 0.00 0.00 33.66 2.66
2498 2624 7.395190 TCATATTCATCTTTGACCAAGTTGG 57.605 36.000 20.76 20.76 45.02 3.77
2509 2635 2.276732 CCAAGTTGGTCATGTCCACT 57.723 50.000 14.21 9.25 37.20 4.00
2510 2636 1.881973 CCAAGTTGGTCATGTCCACTG 59.118 52.381 14.21 9.06 37.20 3.66
2610 2736 3.221771 TGGGACACTCAATTTTGGACTG 58.778 45.455 0.00 0.00 0.00 3.51
2614 2740 4.097892 GGACACTCAATTTTGGACTGTTGT 59.902 41.667 0.00 0.00 0.00 3.32
2782 2908 2.353803 CGCTAGAGGTTGGTAGTTTGCT 60.354 50.000 0.00 0.00 0.00 3.91
2790 2916 5.937111 AGGTTGGTAGTTTGCTTTCTCTTA 58.063 37.500 0.00 0.00 0.00 2.10
3159 3285 6.773638 TCTTTAGTTCCTCAGCTCTCAAAAT 58.226 36.000 0.00 0.00 0.00 1.82
3218 3344 0.183492 AAGCCCTCACACTGCAAGAA 59.817 50.000 0.00 0.00 37.43 2.52
3691 3820 6.878317 TCCTGATGAGGTGAGTATTAACAAG 58.122 40.000 0.00 0.00 40.76 3.16
3714 3843 5.765182 AGATGTTTGTCACCTTTAGGACTTG 59.235 40.000 2.06 0.00 38.94 3.16
4176 4305 8.538409 AGTTCACTTCCATGCAATAAATTTTC 57.462 30.769 0.00 0.00 0.00 2.29
4518 4652 4.689812 CACTTCTATCTGCTATGGATGCAC 59.310 45.833 0.00 0.00 36.37 4.57
4531 4665 5.947228 ATGGATGCACCTTTTATATCACG 57.053 39.130 0.00 0.00 39.86 4.35
4629 4763 0.114954 ACAGTGGGCATGGGTGAAAT 59.885 50.000 0.00 0.00 0.00 2.17
4688 4830 7.582909 AAAATATATGGGTAGAGCATGGGTA 57.417 36.000 0.00 0.00 0.00 3.69
4689 4831 7.771506 AAATATATGGGTAGAGCATGGGTAT 57.228 36.000 0.00 0.00 0.00 2.73
4690 4832 8.869986 AAATATATGGGTAGAGCATGGGTATA 57.130 34.615 0.00 0.00 0.00 1.47
4691 4833 8.869986 AATATATGGGTAGAGCATGGGTATAA 57.130 34.615 0.00 0.00 0.00 0.98
4692 4834 8.869986 ATATATGGGTAGAGCATGGGTATAAA 57.130 34.615 0.00 0.00 0.00 1.40
4693 4835 5.922960 ATGGGTAGAGCATGGGTATAAAA 57.077 39.130 0.00 0.00 0.00 1.52
4694 4836 5.922960 TGGGTAGAGCATGGGTATAAAAT 57.077 39.130 0.00 0.00 0.00 1.82
4695 4837 6.274322 TGGGTAGAGCATGGGTATAAAATT 57.726 37.500 0.00 0.00 0.00 1.82
4758 4902 4.261952 CCAGTGCTAGACTACCATCATCAG 60.262 50.000 0.00 0.00 31.73 2.90
4894 5050 5.908831 TGGGTATTGAAGTGAGTGGGTATAT 59.091 40.000 0.00 0.00 0.00 0.86
4908 5064 7.086685 AGTGGGTATATAAGGTTTATGTGGG 57.913 40.000 0.00 0.00 0.00 4.61
4909 5065 6.852908 AGTGGGTATATAAGGTTTATGTGGGA 59.147 38.462 0.00 0.00 0.00 4.37
4910 5066 7.519706 AGTGGGTATATAAGGTTTATGTGGGAT 59.480 37.037 0.00 0.00 0.00 3.85
4911 5067 8.168058 GTGGGTATATAAGGTTTATGTGGGATT 58.832 37.037 0.00 0.00 0.00 3.01
4912 5068 8.167392 TGGGTATATAAGGTTTATGTGGGATTG 58.833 37.037 0.00 0.00 0.00 2.67
4913 5069 8.168058 GGGTATATAAGGTTTATGTGGGATTGT 58.832 37.037 0.00 0.00 0.00 2.71
4914 5070 9.010029 GGTATATAAGGTTTATGTGGGATTGTG 57.990 37.037 0.00 0.00 0.00 3.33
4915 5071 9.010029 GTATATAAGGTTTATGTGGGATTGTGG 57.990 37.037 0.00 0.00 0.00 4.17
4969 5125 3.987501 ACCCATACCCTACTATTGCCATT 59.012 43.478 0.00 0.00 0.00 3.16
4977 5133 5.133221 CCCTACTATTGCCATTGTTAGCTT 58.867 41.667 0.00 0.00 0.00 3.74
4978 5134 5.594317 CCCTACTATTGCCATTGTTAGCTTT 59.406 40.000 0.00 0.00 0.00 3.51
5300 5456 2.423947 GCCCTCTGAAATGGTGGATCAT 60.424 50.000 0.00 0.00 0.00 2.45
5353 5509 1.904287 TGGTGGCAAGTACCATTCAC 58.096 50.000 0.00 0.00 43.00 3.18
5410 5569 3.619419 TCAATGGCCGATCAATTCAGAA 58.381 40.909 0.00 0.00 0.00 3.02
5411 5570 3.378112 TCAATGGCCGATCAATTCAGAAC 59.622 43.478 0.00 0.00 0.00 3.01
5535 5696 2.359900 AGCCAACGACCTGATCATTTC 58.640 47.619 0.00 0.00 0.00 2.17
5577 5738 7.175990 CCTGGTAATTTTCAGGTTTGTAGCTTA 59.824 37.037 14.93 0.00 44.03 3.09
5579 5740 8.519526 TGGTAATTTTCAGGTTTGTAGCTTATG 58.480 33.333 0.00 0.00 0.00 1.90
5651 5813 1.743252 CAGCAAGCTCCGGGACTTC 60.743 63.158 0.00 0.73 0.00 3.01
5690 6109 6.035542 GCACTGAAAACATAGACTAGAAGCTC 59.964 42.308 0.00 0.00 0.00 4.09
5696 6115 4.942852 ACATAGACTAGAAGCTCATGCAC 58.057 43.478 0.00 0.00 42.74 4.57
5895 6316 2.449137 AATGGCTCATTCCCTTCTGG 57.551 50.000 0.00 0.00 26.27 3.86
5969 6390 1.075482 CCCTCCTTTCTTGCTGCCA 59.925 57.895 0.00 0.00 0.00 4.92
6009 6433 1.271926 TGCCTCCTTAGGTTCCTTTGC 60.272 52.381 0.00 0.00 45.64 3.68
6066 7251 4.659172 ACATGGTGGGGTGCACCG 62.659 66.667 29.08 15.85 45.31 4.94
6096 7281 2.194212 GGCGGTAGATCGAGGCTCA 61.194 63.158 15.95 2.07 0.00 4.26
6104 7289 1.967066 AGATCGAGGCTCAATCGGATT 59.033 47.619 15.95 0.00 40.54 3.01
6118 7303 2.828549 GATTTGGCGGATGGCGGT 60.829 61.111 0.00 0.00 44.92 5.68
6139 7324 2.519780 GTTCGGTGGTTGGGGCAA 60.520 61.111 0.00 0.00 0.00 4.52
6140 7325 2.519780 TTCGGTGGTTGGGGCAAC 60.520 61.111 0.00 0.00 42.89 4.17
6165 7350 2.108514 CCTCGCATGGCATGACGTT 61.109 57.895 30.69 0.00 33.62 3.99
6170 7355 1.634757 GCATGGCATGACGTTGTCGA 61.635 55.000 30.69 0.00 40.62 4.20
6178 7363 2.647529 TGACGTTGTCGAGCATACAT 57.352 45.000 0.00 0.00 40.62 2.29
6195 7380 3.951775 ACATAGATCTCCGATCTTGGC 57.048 47.619 11.21 0.00 0.00 4.52
6198 7383 1.047002 AGATCTCCGATCTTGGCCTG 58.953 55.000 3.32 0.00 0.00 4.85
6203 7388 0.984230 TCCGATCTTGGCCTGTTCTT 59.016 50.000 3.32 0.00 0.00 2.52
6204 7389 2.168521 CTCCGATCTTGGCCTGTTCTTA 59.831 50.000 3.32 0.00 0.00 2.10
6262 7447 1.277273 AGCGGAAGGTTGTTAGTACCC 59.723 52.381 0.00 0.00 40.01 3.69
6265 7450 2.416431 CGGAAGGTTGTTAGTACCCTCG 60.416 54.545 0.00 0.00 36.27 4.63
6266 7451 2.564504 GGAAGGTTGTTAGTACCCTCGT 59.435 50.000 0.00 0.00 36.27 4.18
6267 7452 3.763897 GGAAGGTTGTTAGTACCCTCGTA 59.236 47.826 0.00 0.00 36.27 3.43
6268 7453 4.142293 GGAAGGTTGTTAGTACCCTCGTAG 60.142 50.000 0.00 0.00 36.27 3.51
6284 7470 0.912486 GTAGGGTGGAGAACATGGCT 59.088 55.000 0.00 0.00 0.00 4.75
6292 7478 3.375299 GTGGAGAACATGGCTGAATGTAC 59.625 47.826 0.00 0.00 39.89 2.90
6294 7480 2.609459 GAGAACATGGCTGAATGTACCG 59.391 50.000 0.00 0.00 39.89 4.02
6295 7481 2.236146 AGAACATGGCTGAATGTACCGA 59.764 45.455 0.00 0.00 39.89 4.69
6305 7491 0.611714 AATGTACCGAAACCGAGCCT 59.388 50.000 0.00 0.00 0.00 4.58
6318 7504 2.436646 AGCCTGCGCGCATAGTTT 60.437 55.556 36.48 17.68 41.18 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 8.484799 CAACAAGTTTTTCATTGACAGATCATG 58.515 33.333 0.00 0.00 33.85 3.07
11 12 7.654520 CCAACAAGTTTTTCATTGACAGATCAT 59.345 33.333 0.00 0.00 33.85 2.45
12 13 6.979817 CCAACAAGTTTTTCATTGACAGATCA 59.020 34.615 0.00 0.00 0.00 2.92
13 14 7.168135 GTCCAACAAGTTTTTCATTGACAGATC 59.832 37.037 0.00 0.00 0.00 2.75
14 15 6.980397 GTCCAACAAGTTTTTCATTGACAGAT 59.020 34.615 0.00 0.00 0.00 2.90
15 16 6.071672 TGTCCAACAAGTTTTTCATTGACAGA 60.072 34.615 0.00 0.00 0.00 3.41
16 17 6.098679 TGTCCAACAAGTTTTTCATTGACAG 58.901 36.000 0.00 0.00 0.00 3.51
17 18 6.030548 TGTCCAACAAGTTTTTCATTGACA 57.969 33.333 0.00 0.00 0.00 3.58
18 19 6.980397 AGATGTCCAACAAGTTTTTCATTGAC 59.020 34.615 0.00 0.00 0.00 3.18
19 20 6.979817 CAGATGTCCAACAAGTTTTTCATTGA 59.020 34.615 0.00 0.00 0.00 2.57
20 21 6.201425 CCAGATGTCCAACAAGTTTTTCATTG 59.799 38.462 0.00 0.00 0.00 2.82
21 22 6.127083 ACCAGATGTCCAACAAGTTTTTCATT 60.127 34.615 0.00 0.00 0.00 2.57
22 23 5.363580 ACCAGATGTCCAACAAGTTTTTCAT 59.636 36.000 0.00 0.00 0.00 2.57
23 24 4.709397 ACCAGATGTCCAACAAGTTTTTCA 59.291 37.500 0.00 0.00 0.00 2.69
24 25 5.262588 ACCAGATGTCCAACAAGTTTTTC 57.737 39.130 0.00 0.00 0.00 2.29
25 26 5.675684 AACCAGATGTCCAACAAGTTTTT 57.324 34.783 0.00 0.00 0.00 1.94
26 27 5.675684 AAACCAGATGTCCAACAAGTTTT 57.324 34.783 0.00 0.00 0.00 2.43
27 28 6.777580 AGATAAACCAGATGTCCAACAAGTTT 59.222 34.615 0.00 0.00 31.22 2.66
28 29 6.306987 AGATAAACCAGATGTCCAACAAGTT 58.693 36.000 0.00 0.00 0.00 2.66
29 30 5.880901 AGATAAACCAGATGTCCAACAAGT 58.119 37.500 0.00 0.00 0.00 3.16
30 31 6.207417 ACAAGATAAACCAGATGTCCAACAAG 59.793 38.462 0.00 0.00 0.00 3.16
31 32 6.068010 ACAAGATAAACCAGATGTCCAACAA 58.932 36.000 0.00 0.00 0.00 2.83
32 33 5.630121 ACAAGATAAACCAGATGTCCAACA 58.370 37.500 0.00 0.00 0.00 3.33
33 34 5.163854 CGACAAGATAAACCAGATGTCCAAC 60.164 44.000 0.00 0.00 35.04 3.77
34 35 4.935205 CGACAAGATAAACCAGATGTCCAA 59.065 41.667 0.00 0.00 35.04 3.53
35 36 4.221924 TCGACAAGATAAACCAGATGTCCA 59.778 41.667 0.00 0.00 35.04 4.02
36 37 4.755411 TCGACAAGATAAACCAGATGTCC 58.245 43.478 0.00 0.00 35.04 4.02
37 38 6.910536 ATTCGACAAGATAAACCAGATGTC 57.089 37.500 0.00 0.00 35.13 3.06
38 39 7.390440 TCAAATTCGACAAGATAAACCAGATGT 59.610 33.333 0.00 0.00 0.00 3.06
39 40 7.751732 TCAAATTCGACAAGATAAACCAGATG 58.248 34.615 0.00 0.00 0.00 2.90
40 41 7.824289 TCTCAAATTCGACAAGATAAACCAGAT 59.176 33.333 0.00 0.00 0.00 2.90
41 42 7.117812 GTCTCAAATTCGACAAGATAAACCAGA 59.882 37.037 0.00 0.00 0.00 3.86
42 43 7.095229 TGTCTCAAATTCGACAAGATAAACCAG 60.095 37.037 3.54 0.00 37.23 4.00
43 44 6.708502 TGTCTCAAATTCGACAAGATAAACCA 59.291 34.615 3.54 0.00 37.23 3.67
44 45 7.129109 TGTCTCAAATTCGACAAGATAAACC 57.871 36.000 3.54 0.00 37.23 3.27
45 46 9.055248 CAATGTCTCAAATTCGACAAGATAAAC 57.945 33.333 8.61 0.00 42.73 2.01
46 47 8.783093 ACAATGTCTCAAATTCGACAAGATAAA 58.217 29.630 8.61 0.00 42.73 1.40
47 48 8.322906 ACAATGTCTCAAATTCGACAAGATAA 57.677 30.769 8.61 0.00 42.73 1.75
48 49 7.905604 ACAATGTCTCAAATTCGACAAGATA 57.094 32.000 8.61 0.00 42.73 1.98
49 50 6.808008 ACAATGTCTCAAATTCGACAAGAT 57.192 33.333 8.61 0.00 42.73 2.40
50 51 6.038161 ACAACAATGTCTCAAATTCGACAAGA 59.962 34.615 8.61 0.00 42.73 3.02
51 52 6.201517 ACAACAATGTCTCAAATTCGACAAG 58.798 36.000 8.61 7.53 42.73 3.16
52 53 6.130298 ACAACAATGTCTCAAATTCGACAA 57.870 33.333 8.61 0.00 42.73 3.18
53 54 5.749596 ACAACAATGTCTCAAATTCGACA 57.250 34.783 7.39 7.39 43.51 4.35
54 55 6.077838 GGTACAACAATGTCTCAAATTCGAC 58.922 40.000 0.00 0.00 41.05 4.20
55 56 5.760743 TGGTACAACAATGTCTCAAATTCGA 59.239 36.000 0.00 0.00 41.05 3.71
56 57 5.996219 TGGTACAACAATGTCTCAAATTCG 58.004 37.500 0.00 0.00 41.05 3.34
88 89 9.941325 ACAAAGCATCCATAAATTGAATACAAA 57.059 25.926 0.00 0.00 39.54 2.83
89 90 9.368674 CACAAAGCATCCATAAATTGAATACAA 57.631 29.630 0.00 0.00 40.42 2.41
90 91 7.492020 GCACAAAGCATCCATAAATTGAATACA 59.508 33.333 0.00 0.00 44.79 2.29
91 92 7.844482 GCACAAAGCATCCATAAATTGAATAC 58.156 34.615 0.00 0.00 44.79 1.89
93 94 6.913873 GCACAAAGCATCCATAAATTGAAT 57.086 33.333 0.00 0.00 44.79 2.57
120 121 9.190858 CAATGTTCATCAAAACTCGGATAAAAA 57.809 29.630 0.00 0.00 0.00 1.94
121 122 7.812191 CCAATGTTCATCAAAACTCGGATAAAA 59.188 33.333 0.00 0.00 0.00 1.52
122 123 7.312154 CCAATGTTCATCAAAACTCGGATAAA 58.688 34.615 0.00 0.00 0.00 1.40
123 124 6.624861 GCCAATGTTCATCAAAACTCGGATAA 60.625 38.462 0.00 0.00 0.00 1.75
124 125 5.163663 GCCAATGTTCATCAAAACTCGGATA 60.164 40.000 0.00 0.00 0.00 2.59
125 126 4.380867 GCCAATGTTCATCAAAACTCGGAT 60.381 41.667 0.00 0.00 0.00 4.18
126 127 3.057596 GCCAATGTTCATCAAAACTCGGA 60.058 43.478 0.00 0.00 0.00 4.55
127 128 3.244976 GCCAATGTTCATCAAAACTCGG 58.755 45.455 0.00 0.00 0.00 4.63
128 129 3.244976 GGCCAATGTTCATCAAAACTCG 58.755 45.455 0.00 0.00 0.00 4.18
129 130 3.244976 CGGCCAATGTTCATCAAAACTC 58.755 45.455 2.24 0.00 0.00 3.01
130 131 2.029110 CCGGCCAATGTTCATCAAAACT 60.029 45.455 2.24 0.00 0.00 2.66
131 132 2.288763 ACCGGCCAATGTTCATCAAAAC 60.289 45.455 0.00 0.00 0.00 2.43
132 133 1.967066 ACCGGCCAATGTTCATCAAAA 59.033 42.857 0.00 0.00 0.00 2.44
133 134 1.543802 GACCGGCCAATGTTCATCAAA 59.456 47.619 0.00 0.00 0.00 2.69
134 135 1.173043 GACCGGCCAATGTTCATCAA 58.827 50.000 0.00 0.00 0.00 2.57
135 136 0.327924 AGACCGGCCAATGTTCATCA 59.672 50.000 0.00 0.00 0.00 3.07
136 137 0.734889 CAGACCGGCCAATGTTCATC 59.265 55.000 0.00 0.00 0.00 2.92
137 138 1.315257 GCAGACCGGCCAATGTTCAT 61.315 55.000 0.00 0.00 0.00 2.57
138 139 1.971167 GCAGACCGGCCAATGTTCA 60.971 57.895 0.00 0.00 0.00 3.18
139 140 1.315257 ATGCAGACCGGCCAATGTTC 61.315 55.000 0.00 0.00 0.00 3.18
140 141 1.304381 ATGCAGACCGGCCAATGTT 60.304 52.632 0.00 0.00 0.00 2.71
141 142 2.048023 CATGCAGACCGGCCAATGT 61.048 57.895 0.00 0.00 0.00 2.71
142 143 1.314534 TTCATGCAGACCGGCCAATG 61.315 55.000 0.00 0.00 0.00 2.82
143 144 0.396139 ATTCATGCAGACCGGCCAAT 60.396 50.000 0.00 0.00 0.00 3.16
144 145 0.611618 AATTCATGCAGACCGGCCAA 60.612 50.000 0.00 0.00 0.00 4.52
145 146 0.611618 AAATTCATGCAGACCGGCCA 60.612 50.000 0.00 0.00 0.00 5.36
146 147 0.101219 GAAATTCATGCAGACCGGCC 59.899 55.000 0.00 0.00 0.00 6.13
147 148 1.098050 AGAAATTCATGCAGACCGGC 58.902 50.000 0.00 0.00 0.00 6.13
148 149 2.223112 CGAAGAAATTCATGCAGACCGG 60.223 50.000 0.00 0.00 0.00 5.28
149 150 2.416547 ACGAAGAAATTCATGCAGACCG 59.583 45.455 0.00 0.00 0.00 4.79
150 151 3.686726 AGACGAAGAAATTCATGCAGACC 59.313 43.478 0.00 0.00 0.00 3.85
151 152 4.935885 AGACGAAGAAATTCATGCAGAC 57.064 40.909 0.00 0.00 0.00 3.51
152 153 5.724328 ACTAGACGAAGAAATTCATGCAGA 58.276 37.500 0.00 0.00 0.00 4.26
153 154 6.414408 AACTAGACGAAGAAATTCATGCAG 57.586 37.500 0.00 0.00 0.00 4.41
154 155 6.801539 AAACTAGACGAAGAAATTCATGCA 57.198 33.333 0.00 0.00 0.00 3.96
155 156 9.774742 ATTTAAACTAGACGAAGAAATTCATGC 57.225 29.630 0.00 0.00 0.00 4.06
157 158 9.774742 GCATTTAAACTAGACGAAGAAATTCAT 57.225 29.630 0.00 0.00 0.00 2.57
158 159 7.955324 CGCATTTAAACTAGACGAAGAAATTCA 59.045 33.333 0.00 0.00 0.00 2.57
159 160 7.425595 CCGCATTTAAACTAGACGAAGAAATTC 59.574 37.037 0.00 0.00 0.00 2.17
160 161 7.241376 CCGCATTTAAACTAGACGAAGAAATT 58.759 34.615 0.00 0.00 0.00 1.82
161 162 6.674760 GCCGCATTTAAACTAGACGAAGAAAT 60.675 38.462 0.00 0.00 0.00 2.17
162 163 5.390145 GCCGCATTTAAACTAGACGAAGAAA 60.390 40.000 0.00 0.00 0.00 2.52
163 164 4.092383 GCCGCATTTAAACTAGACGAAGAA 59.908 41.667 0.00 0.00 0.00 2.52
164 165 3.615496 GCCGCATTTAAACTAGACGAAGA 59.385 43.478 0.00 0.00 0.00 2.87
165 166 3.617263 AGCCGCATTTAAACTAGACGAAG 59.383 43.478 0.00 0.00 0.00 3.79
166 167 3.592059 AGCCGCATTTAAACTAGACGAA 58.408 40.909 0.00 0.00 0.00 3.85
167 168 3.241067 AGCCGCATTTAAACTAGACGA 57.759 42.857 0.00 0.00 0.00 4.20
168 169 3.369756 TCAAGCCGCATTTAAACTAGACG 59.630 43.478 0.00 0.00 0.00 4.18
169 170 4.939509 TCAAGCCGCATTTAAACTAGAC 57.060 40.909 0.00 0.00 0.00 2.59
170 171 5.950758 TTTCAAGCCGCATTTAAACTAGA 57.049 34.783 0.00 0.00 0.00 2.43
171 172 7.247728 TGTATTTCAAGCCGCATTTAAACTAG 58.752 34.615 0.00 0.00 0.00 2.57
172 173 7.147143 TGTATTTCAAGCCGCATTTAAACTA 57.853 32.000 0.00 0.00 0.00 2.24
173 174 6.019779 TGTATTTCAAGCCGCATTTAAACT 57.980 33.333 0.00 0.00 0.00 2.66
174 175 6.695245 CATGTATTTCAAGCCGCATTTAAAC 58.305 36.000 0.00 0.00 0.00 2.01
175 176 5.290643 GCATGTATTTCAAGCCGCATTTAAA 59.709 36.000 0.00 0.00 35.09 1.52
176 177 4.803088 GCATGTATTTCAAGCCGCATTTAA 59.197 37.500 0.00 0.00 35.09 1.52
177 178 4.358851 GCATGTATTTCAAGCCGCATTTA 58.641 39.130 0.00 0.00 35.09 1.40
178 179 3.189285 GCATGTATTTCAAGCCGCATTT 58.811 40.909 0.00 0.00 35.09 2.32
179 180 2.813061 GCATGTATTTCAAGCCGCATT 58.187 42.857 0.00 0.00 35.09 3.56
180 181 2.497107 GCATGTATTTCAAGCCGCAT 57.503 45.000 0.00 0.00 35.09 4.73
185 186 2.618241 TCATCCGGCATGTATTTCAAGC 59.382 45.455 0.00 0.00 39.65 4.01
186 187 4.516321 TCATCATCCGGCATGTATTTCAAG 59.484 41.667 0.00 0.00 33.66 3.02
187 188 4.459330 TCATCATCCGGCATGTATTTCAA 58.541 39.130 0.00 0.00 33.66 2.69
188 189 4.084011 TCATCATCCGGCATGTATTTCA 57.916 40.909 0.00 0.00 33.66 2.69
189 190 4.940046 AGATCATCATCCGGCATGTATTTC 59.060 41.667 0.00 0.27 33.66 2.17
190 191 4.914983 AGATCATCATCCGGCATGTATTT 58.085 39.130 0.00 0.00 33.66 1.40
191 192 4.564782 AGATCATCATCCGGCATGTATT 57.435 40.909 0.00 0.00 33.66 1.89
192 193 4.511527 GAAGATCATCATCCGGCATGTAT 58.488 43.478 0.00 0.00 33.66 2.29
193 194 3.614870 CGAAGATCATCATCCGGCATGTA 60.615 47.826 0.00 0.00 33.66 2.29
194 195 2.775890 GAAGATCATCATCCGGCATGT 58.224 47.619 0.00 0.00 33.66 3.21
195 196 1.730612 CGAAGATCATCATCCGGCATG 59.269 52.381 0.00 1.63 0.00 4.06
196 197 1.338484 CCGAAGATCATCATCCGGCAT 60.338 52.381 0.00 0.00 0.00 4.40
197 198 0.033920 CCGAAGATCATCATCCGGCA 59.966 55.000 0.00 0.00 0.00 5.69
198 199 0.034059 ACCGAAGATCATCATCCGGC 59.966 55.000 10.98 0.00 40.48 6.13
199 200 3.876274 ATACCGAAGATCATCATCCGG 57.124 47.619 9.86 9.86 42.30 5.14
200 201 8.972349 CATTAATATACCGAAGATCATCATCCG 58.028 37.037 0.00 0.00 0.00 4.18
201 202 9.823647 ACATTAATATACCGAAGATCATCATCC 57.176 33.333 0.00 0.00 0.00 3.51
204 205 9.860898 CAGACATTAATATACCGAAGATCATCA 57.139 33.333 0.00 0.00 0.00 3.07
205 206 8.812329 GCAGACATTAATATACCGAAGATCATC 58.188 37.037 0.00 0.00 0.00 2.92
206 207 8.314021 TGCAGACATTAATATACCGAAGATCAT 58.686 33.333 0.00 0.00 0.00 2.45
207 208 7.666623 TGCAGACATTAATATACCGAAGATCA 58.333 34.615 0.00 0.00 0.00 2.92
208 209 7.276658 CCTGCAGACATTAATATACCGAAGATC 59.723 40.741 17.39 0.00 0.00 2.75
209 210 7.099764 CCTGCAGACATTAATATACCGAAGAT 58.900 38.462 17.39 0.00 0.00 2.40
210 211 6.455647 CCTGCAGACATTAATATACCGAAGA 58.544 40.000 17.39 0.00 0.00 2.87
211 212 5.120830 GCCTGCAGACATTAATATACCGAAG 59.879 44.000 17.39 0.00 0.00 3.79
212 213 4.994852 GCCTGCAGACATTAATATACCGAA 59.005 41.667 17.39 0.00 0.00 4.30
213 214 4.283467 AGCCTGCAGACATTAATATACCGA 59.717 41.667 17.39 0.00 0.00 4.69
214 215 4.389992 CAGCCTGCAGACATTAATATACCG 59.610 45.833 17.39 0.00 0.00 4.02
215 216 5.551233 TCAGCCTGCAGACATTAATATACC 58.449 41.667 17.39 0.00 0.00 2.73
216 217 6.314896 GGATCAGCCTGCAGACATTAATATAC 59.685 42.308 17.39 0.00 0.00 1.47
217 218 6.409704 GGATCAGCCTGCAGACATTAATATA 58.590 40.000 17.39 0.00 0.00 0.86
218 219 5.251764 GGATCAGCCTGCAGACATTAATAT 58.748 41.667 17.39 0.00 0.00 1.28
219 220 4.645535 GGATCAGCCTGCAGACATTAATA 58.354 43.478 17.39 0.00 0.00 0.98
220 221 3.484407 GGATCAGCCTGCAGACATTAAT 58.516 45.455 17.39 0.44 0.00 1.40
221 222 2.742856 CGGATCAGCCTGCAGACATTAA 60.743 50.000 17.39 0.00 0.00 1.40
222 223 1.202568 CGGATCAGCCTGCAGACATTA 60.203 52.381 17.39 0.00 0.00 1.90
223 224 0.463295 CGGATCAGCCTGCAGACATT 60.463 55.000 17.39 0.00 0.00 2.71
224 225 1.145598 CGGATCAGCCTGCAGACAT 59.854 57.895 17.39 0.44 0.00 3.06
225 226 2.285773 ACGGATCAGCCTGCAGACA 61.286 57.895 17.39 0.00 0.00 3.41
226 227 1.812922 CACGGATCAGCCTGCAGAC 60.813 63.158 17.39 2.52 0.00 3.51
227 228 2.285773 ACACGGATCAGCCTGCAGA 61.286 57.895 17.39 0.00 0.00 4.26
228 229 2.104859 CACACGGATCAGCCTGCAG 61.105 63.158 6.78 6.78 0.00 4.41
229 230 2.046988 CACACGGATCAGCCTGCA 60.047 61.111 0.00 0.00 0.00 4.41
230 231 3.503363 GCACACGGATCAGCCTGC 61.503 66.667 0.00 0.00 0.00 4.85
231 232 3.190849 CGCACACGGATCAGCCTG 61.191 66.667 0.00 0.00 34.97 4.85
232 233 3.695606 ACGCACACGGATCAGCCT 61.696 61.111 0.00 0.00 46.04 4.58
233 234 3.490759 CACGCACACGGATCAGCC 61.491 66.667 0.00 0.00 46.04 4.85
234 235 3.490759 CCACGCACACGGATCAGC 61.491 66.667 0.00 0.00 46.04 4.26
235 236 0.102300 TATCCACGCACACGGATCAG 59.898 55.000 0.00 0.00 46.04 2.90
236 237 0.102300 CTATCCACGCACACGGATCA 59.898 55.000 0.00 0.00 46.04 2.92
237 238 0.384309 TCTATCCACGCACACGGATC 59.616 55.000 0.00 0.00 46.04 3.36
238 239 1.040646 ATCTATCCACGCACACGGAT 58.959 50.000 0.00 0.00 46.04 4.18
239 240 0.102300 CATCTATCCACGCACACGGA 59.898 55.000 0.00 0.00 46.04 4.69
240 241 0.875908 CCATCTATCCACGCACACGG 60.876 60.000 0.00 0.00 46.04 4.94
242 243 1.490693 CGCCATCTATCCACGCACAC 61.491 60.000 0.00 0.00 0.00 3.82
243 244 1.227234 CGCCATCTATCCACGCACA 60.227 57.895 0.00 0.00 0.00 4.57
244 245 1.956170 CCGCCATCTATCCACGCAC 60.956 63.158 0.00 0.00 0.00 5.34
245 246 2.087462 CTCCGCCATCTATCCACGCA 62.087 60.000 0.00 0.00 0.00 5.24
246 247 1.373497 CTCCGCCATCTATCCACGC 60.373 63.158 0.00 0.00 0.00 5.34
247 248 1.373497 GCTCCGCCATCTATCCACG 60.373 63.158 0.00 0.00 0.00 4.94
248 249 0.106708 TTGCTCCGCCATCTATCCAC 59.893 55.000 0.00 0.00 0.00 4.02
249 250 0.836606 TTTGCTCCGCCATCTATCCA 59.163 50.000 0.00 0.00 0.00 3.41
250 251 2.191128 ATTTGCTCCGCCATCTATCC 57.809 50.000 0.00 0.00 0.00 2.59
251 252 3.893720 CAAATTTGCTCCGCCATCTATC 58.106 45.455 5.01 0.00 0.00 2.08
252 253 3.996150 CAAATTTGCTCCGCCATCTAT 57.004 42.857 5.01 0.00 0.00 1.98
265 266 3.369385 GCATCTCAGGATCGCAAATTTG 58.631 45.455 14.03 14.03 0.00 2.32
266 267 2.360165 GGCATCTCAGGATCGCAAATTT 59.640 45.455 0.00 0.00 32.03 1.82
267 268 1.952296 GGCATCTCAGGATCGCAAATT 59.048 47.619 0.00 0.00 32.03 1.82
268 269 1.602311 GGCATCTCAGGATCGCAAAT 58.398 50.000 0.00 0.00 32.03 2.32
269 270 0.464373 GGGCATCTCAGGATCGCAAA 60.464 55.000 0.00 0.00 32.03 3.68
270 271 1.146930 GGGCATCTCAGGATCGCAA 59.853 57.895 0.00 0.00 32.03 4.85
271 272 0.469892 TAGGGCATCTCAGGATCGCA 60.470 55.000 0.00 0.00 32.03 5.10
272 273 0.681733 TTAGGGCATCTCAGGATCGC 59.318 55.000 0.00 0.00 0.00 4.58
273 274 1.337635 GCTTAGGGCATCTCAGGATCG 60.338 57.143 0.00 0.00 41.35 3.69
274 275 2.470983 GCTTAGGGCATCTCAGGATC 57.529 55.000 0.00 0.00 41.35 3.36
285 286 3.278574 TGACATGTAACATGCTTAGGGC 58.721 45.455 0.00 0.00 42.22 5.19
286 287 4.201950 GCTTGACATGTAACATGCTTAGGG 60.202 45.833 14.55 0.00 35.37 3.53
287 288 4.494690 CGCTTGACATGTAACATGCTTAGG 60.495 45.833 17.69 4.68 35.84 2.69
288 289 4.093408 ACGCTTGACATGTAACATGCTTAG 59.907 41.667 17.69 9.13 35.84 2.18
289 290 4.000325 ACGCTTGACATGTAACATGCTTA 59.000 39.130 17.69 0.00 35.84 3.09
290 291 2.813754 ACGCTTGACATGTAACATGCTT 59.186 40.909 17.69 9.81 35.84 3.91
291 292 2.426522 ACGCTTGACATGTAACATGCT 58.573 42.857 17.69 7.31 35.84 3.79
292 293 2.900122 ACGCTTGACATGTAACATGC 57.100 45.000 12.72 12.72 35.06 4.06
293 294 6.105657 TGAATACGCTTGACATGTAACATG 57.894 37.500 0.00 0.00 0.00 3.21
294 295 6.925610 ATGAATACGCTTGACATGTAACAT 57.074 33.333 0.00 0.00 0.00 2.71
295 296 6.735678 AATGAATACGCTTGACATGTAACA 57.264 33.333 0.00 0.00 0.00 2.41
296 297 9.210426 CTTAAATGAATACGCTTGACATGTAAC 57.790 33.333 0.00 0.00 0.00 2.50
297 298 7.908082 GCTTAAATGAATACGCTTGACATGTAA 59.092 33.333 0.00 0.00 0.00 2.41
298 299 7.406553 GCTTAAATGAATACGCTTGACATGTA 58.593 34.615 0.00 0.00 0.00 2.29
299 300 6.258160 GCTTAAATGAATACGCTTGACATGT 58.742 36.000 0.00 0.00 0.00 3.21
300 301 5.682862 GGCTTAAATGAATACGCTTGACATG 59.317 40.000 0.00 0.00 0.00 3.21
306 307 4.097892 CCCAAGGCTTAAATGAATACGCTT 59.902 41.667 0.00 0.00 0.00 4.68
335 336 1.734465 GAGACTGATTGGTTCAAGCCG 59.266 52.381 0.00 0.00 32.78 5.52
341 342 1.696832 GCGCGGAGACTGATTGGTTC 61.697 60.000 8.83 0.00 0.00 3.62
343 344 2.125512 GCGCGGAGACTGATTGGT 60.126 61.111 8.83 0.00 0.00 3.67
345 346 1.298157 TTTGGCGCGGAGACTGATTG 61.298 55.000 8.83 0.00 0.00 2.67
347 348 0.605319 TTTTTGGCGCGGAGACTGAT 60.605 50.000 8.83 0.00 0.00 2.90
348 349 1.227704 TTTTTGGCGCGGAGACTGA 60.228 52.632 8.83 0.00 0.00 3.41
349 350 1.082104 GTTTTTGGCGCGGAGACTG 60.082 57.895 8.83 0.00 0.00 3.51
429 433 1.137459 GCTTTTATTTTCCCGCCGCG 61.137 55.000 5.59 5.59 0.00 6.46
514 518 0.883370 GCAGGGAAAACGTCTCGGTT 60.883 55.000 0.00 0.00 38.92 4.44
516 520 1.004918 AGCAGGGAAAACGTCTCGG 60.005 57.895 0.00 0.00 0.00 4.63
561 566 4.383118 GCCTGGTGATTCTAGTGTATGTGT 60.383 45.833 0.00 0.00 0.00 3.72
562 567 4.122776 GCCTGGTGATTCTAGTGTATGTG 58.877 47.826 0.00 0.00 0.00 3.21
563 568 3.134804 GGCCTGGTGATTCTAGTGTATGT 59.865 47.826 0.00 0.00 0.00 2.29
564 569 3.134623 TGGCCTGGTGATTCTAGTGTATG 59.865 47.826 3.32 0.00 0.00 2.39
570 575 2.171237 TCATGTGGCCTGGTGATTCTAG 59.829 50.000 3.32 0.00 0.00 2.43
609 614 3.455177 TGTACTGGTACAACAGGGAAACA 59.545 43.478 10.66 0.00 42.49 2.83
661 671 5.163519 CCAAAGGCTTCTTCACTGAGAAAAA 60.164 40.000 0.00 0.00 35.38 1.94
664 674 3.480470 CCAAAGGCTTCTTCACTGAGAA 58.520 45.455 0.00 0.00 34.63 2.87
721 731 9.653287 TCTTACGAGTGTTCAATTTATGATCTT 57.347 29.630 0.00 0.00 38.03 2.40
722 732 9.653287 TTCTTACGAGTGTTCAATTTATGATCT 57.347 29.630 0.00 0.00 38.03 2.75
723 733 9.907576 CTTCTTACGAGTGTTCAATTTATGATC 57.092 33.333 0.00 0.00 38.03 2.92
724 734 9.653287 TCTTCTTACGAGTGTTCAATTTATGAT 57.347 29.630 0.00 0.00 38.03 2.45
725 735 9.653287 ATCTTCTTACGAGTGTTCAATTTATGA 57.347 29.630 0.00 0.00 35.85 2.15
726 736 9.694520 CATCTTCTTACGAGTGTTCAATTTATG 57.305 33.333 0.00 0.00 0.00 1.90
727 737 9.436957 ACATCTTCTTACGAGTGTTCAATTTAT 57.563 29.630 0.00 0.00 0.00 1.40
728 738 8.827177 ACATCTTCTTACGAGTGTTCAATTTA 57.173 30.769 0.00 0.00 0.00 1.40
729 739 7.730364 ACATCTTCTTACGAGTGTTCAATTT 57.270 32.000 0.00 0.00 0.00 1.82
730 740 8.827177 TTACATCTTCTTACGAGTGTTCAATT 57.173 30.769 0.00 0.00 0.00 2.32
731 741 8.827177 TTTACATCTTCTTACGAGTGTTCAAT 57.173 30.769 0.00 0.00 0.00 2.57
1089 1124 1.817941 CGGGCCGAAATGGTGGTAG 60.818 63.158 24.41 0.00 41.21 3.18
1223 1258 2.802816 GTTGCGTCCTATAAGCATCCAG 59.197 50.000 0.00 0.00 42.37 3.86
1228 1263 0.179094 CCGGTTGCGTCCTATAAGCA 60.179 55.000 0.00 0.00 41.06 3.91
1233 1268 1.814527 GAGACCGGTTGCGTCCTAT 59.185 57.895 9.42 0.00 0.00 2.57
1291 1327 4.547905 CGCACGATCTACCGCGGT 62.548 66.667 36.01 36.01 43.84 5.68
1296 1332 1.154205 ATTGCTGCGCACGATCTACC 61.154 55.000 5.66 0.00 38.71 3.18
1425 1463 1.732917 CTTTGTTGGACTGCGCCAA 59.267 52.632 4.18 0.00 45.28 4.52
1588 1629 5.846714 ACTATATGCTTTGTAGGAGGATGGT 59.153 40.000 0.00 0.00 0.00 3.55
1611 1652 0.250467 TTGAGAGCAGCTGGGAACAC 60.250 55.000 17.12 0.00 35.60 3.32
1637 1678 3.243002 GCATGGAGCAGAATGAAGTAAGC 60.243 47.826 0.00 0.00 44.79 3.09
1656 1697 3.813443 CTTGAGCCACTATAGGTTGCAT 58.187 45.455 4.43 0.00 38.82 3.96
1759 1870 9.554395 TGAAACTTGAAACTCATAACATAGTCA 57.446 29.630 0.00 0.00 0.00 3.41
1779 1890 6.041637 GGGGAATTTAGTTGAAGGTTGAAACT 59.958 38.462 0.00 0.00 37.82 2.66
1780 1891 6.183360 TGGGGAATTTAGTTGAAGGTTGAAAC 60.183 38.462 0.00 0.00 0.00 2.78
1784 1895 5.723295 CATGGGGAATTTAGTTGAAGGTTG 58.277 41.667 0.00 0.00 0.00 3.77
1786 1897 3.769300 GCATGGGGAATTTAGTTGAAGGT 59.231 43.478 0.00 0.00 0.00 3.50
1787 1898 4.026052 AGCATGGGGAATTTAGTTGAAGG 58.974 43.478 0.00 0.00 0.00 3.46
1788 1899 4.463891 ACAGCATGGGGAATTTAGTTGAAG 59.536 41.667 0.00 0.00 43.62 3.02
1789 1900 4.220382 CACAGCATGGGGAATTTAGTTGAA 59.780 41.667 0.00 0.00 43.62 2.69
1790 1901 3.763360 CACAGCATGGGGAATTTAGTTGA 59.237 43.478 0.00 0.00 43.62 3.18
1791 1902 4.114058 CACAGCATGGGGAATTTAGTTG 57.886 45.455 0.00 0.00 43.62 3.16
1806 1917 0.740149 CTGCCTGTTTTCACACAGCA 59.260 50.000 0.00 0.00 42.63 4.41
1807 1918 1.024271 TCTGCCTGTTTTCACACAGC 58.976 50.000 0.00 0.00 42.63 4.40
1978 2091 5.841957 AGTTTTATAGCCTGGATTTGCAG 57.158 39.130 0.00 0.00 0.00 4.41
2290 2416 7.470147 GCTCATCATCCAATCATTTGATTCAGT 60.470 37.037 2.83 0.00 42.41 3.41
2335 2461 4.142038 GGTGTAGGAATTGGACTGTTTGT 58.858 43.478 0.00 0.00 0.00 2.83
2464 2590 9.006839 GTCAAAGATGAATATGATTCATGGCTA 57.993 33.333 17.21 0.03 39.08 3.93
2496 2622 6.560003 AATAGTATTCAGTGGACATGACCA 57.440 37.500 13.13 13.13 37.63 4.02
2498 2624 7.552687 TGGAAAATAGTATTCAGTGGACATGAC 59.447 37.037 0.00 0.00 0.00 3.06
2505 2631 7.112779 AGAACCTGGAAAATAGTATTCAGTGG 58.887 38.462 0.00 0.00 0.00 4.00
2506 2632 7.281100 GGAGAACCTGGAAAATAGTATTCAGTG 59.719 40.741 0.00 0.00 0.00 3.66
2507 2633 7.339482 GGAGAACCTGGAAAATAGTATTCAGT 58.661 38.462 0.00 0.00 0.00 3.41
2508 2634 6.480320 CGGAGAACCTGGAAAATAGTATTCAG 59.520 42.308 0.00 0.00 0.00 3.02
2509 2635 6.346096 CGGAGAACCTGGAAAATAGTATTCA 58.654 40.000 0.00 0.00 0.00 2.57
2510 2636 5.758784 CCGGAGAACCTGGAAAATAGTATTC 59.241 44.000 0.00 0.00 33.79 1.75
2566 2692 6.549364 CCATCTAACCTAGGGAGCTATCATAG 59.451 46.154 14.81 0.00 0.00 2.23
2790 2916 9.883142 CTAACACTAGAAAGGATCTCTTGAAAT 57.117 33.333 0.00 0.00 39.71 2.17
2882 3008 3.923273 TCTATCAGCCCTATCCCTTCA 57.077 47.619 0.00 0.00 0.00 3.02
3185 3311 2.975489 GAGGGCTTCAATATCTCCCTGA 59.025 50.000 2.42 0.00 46.71 3.86
3218 3344 6.127140 ACCTTATTTGTCCGTCTAAGCTATGT 60.127 38.462 0.00 0.00 0.00 2.29
3494 3620 5.009710 AGCATGGCAAAGACTTGATATCATG 59.990 40.000 15.20 15.20 34.14 3.07
3691 3820 5.048713 CCAAGTCCTAAAGGTGACAAACATC 60.049 44.000 0.00 0.00 36.34 3.06
3930 4059 5.123502 CCACTCATCTCCTCAAATTGACTTG 59.876 44.000 0.00 0.00 0.00 3.16
3974 4103 3.825585 TCCATGCTTATTGTTTGTGCAGA 59.174 39.130 0.00 0.00 37.07 4.26
4518 4652 5.116180 TGAGCTCAACCGTGATATAAAAGG 58.884 41.667 15.67 0.00 31.85 3.11
4531 4665 4.949856 TCCTATTTCCAAATGAGCTCAACC 59.050 41.667 22.50 0.00 0.00 3.77
4591 4725 4.417885 CTGTTTTCAGTTAGGGTACCCGC 61.418 52.174 25.53 18.55 46.70 6.13
4592 4726 3.332034 CTGTTTTCAGTTAGGGTACCCG 58.668 50.000 25.53 10.89 46.70 5.28
4758 4902 7.958025 GGTCGAGAAATGAGTCTAAAATTCAAC 59.042 37.037 0.00 0.00 0.00 3.18
4894 5050 4.044825 ACCCACAATCCCACATAAACCTTA 59.955 41.667 0.00 0.00 0.00 2.69
4908 5064 1.756538 CCCAAAGCCATACCCACAATC 59.243 52.381 0.00 0.00 0.00 2.67
4909 5065 1.864669 CCCAAAGCCATACCCACAAT 58.135 50.000 0.00 0.00 0.00 2.71
4910 5066 0.902516 GCCCAAAGCCATACCCACAA 60.903 55.000 0.00 0.00 34.35 3.33
4911 5067 1.304879 GCCCAAAGCCATACCCACA 60.305 57.895 0.00 0.00 34.35 4.17
4912 5068 1.304879 TGCCCAAAGCCATACCCAC 60.305 57.895 0.00 0.00 42.71 4.61
4913 5069 1.000233 CTGCCCAAAGCCATACCCA 60.000 57.895 0.00 0.00 42.71 4.51
4914 5070 0.324275 TTCTGCCCAAAGCCATACCC 60.324 55.000 0.00 0.00 42.71 3.69
4915 5071 1.106285 CTTCTGCCCAAAGCCATACC 58.894 55.000 0.00 0.00 42.71 2.73
4969 5125 7.093988 TGCTTATGCAGGAAATTAAAGCTAACA 60.094 33.333 0.00 0.00 45.31 2.41
5300 5456 0.901827 TTCAGCTAATGCACGAGGGA 59.098 50.000 0.00 0.00 42.74 4.20
5353 5509 4.630069 AGAAACGAAGAATTCCCACGTATG 59.370 41.667 17.67 0.00 43.81 2.39
5410 5569 0.605589 CTTTGCTCTCGGGTCTCTGT 59.394 55.000 0.00 0.00 0.00 3.41
5411 5570 0.108424 CCTTTGCTCTCGGGTCTCTG 60.108 60.000 0.00 0.00 0.00 3.35
5535 5696 2.834549 ACCAGGTTGTCAGTAGATCTGG 59.165 50.000 5.18 0.00 43.76 3.86
5557 5718 6.868339 GCACATAAGCTACAAACCTGAAAATT 59.132 34.615 0.00 0.00 0.00 1.82
5577 5738 1.741706 GAGCTACAACATGCAGCACAT 59.258 47.619 0.00 0.00 39.19 3.21
5579 5740 1.135859 GTGAGCTACAACATGCAGCAC 60.136 52.381 0.00 0.00 39.19 4.40
5645 5807 7.334421 TCAGTGCTACTTGAAATAATGAAGTCC 59.666 37.037 0.00 0.00 32.27 3.85
5651 5813 9.630098 ATGTTTTCAGTGCTACTTGAAATAATG 57.370 29.630 1.07 0.00 30.96 1.90
5690 6109 3.042189 CGGTTTGTGTTACAAGTGCATG 58.958 45.455 0.00 0.00 39.53 4.06
5696 6115 2.353269 TGCTGACGGTTTGTGTTACAAG 59.647 45.455 0.00 0.00 39.53 3.16
5816 6235 4.591321 ATCTCCAGGCTTTATTGTCCAA 57.409 40.909 0.00 0.00 0.00 3.53
5969 6390 2.937689 ATGCCCACACCCTCTGCT 60.938 61.111 0.00 0.00 0.00 4.24
6046 7231 1.530419 GTGCACCCCACCATGTCAA 60.530 57.895 5.22 0.00 38.55 3.18
6047 7232 2.115052 GTGCACCCCACCATGTCA 59.885 61.111 5.22 0.00 38.55 3.58
6088 7273 0.940126 CCAAATCCGATTGAGCCTCG 59.060 55.000 0.00 0.00 35.92 4.63
6096 7281 1.455383 GCCATCCGCCAAATCCGATT 61.455 55.000 0.00 0.00 0.00 3.34
6118 7303 4.939368 CCCAACCACCGAACCGCA 62.939 66.667 0.00 0.00 0.00 5.69
6123 7308 2.519780 GTTGCCCCAACCACCGAA 60.520 61.111 0.00 0.00 38.30 4.30
6152 7337 0.371301 CTCGACAACGTCATGCCATG 59.629 55.000 0.00 0.00 40.69 3.66
6153 7338 1.361668 GCTCGACAACGTCATGCCAT 61.362 55.000 0.00 0.00 40.69 4.40
6162 7347 4.788690 AGATCTATGTATGCTCGACAACG 58.211 43.478 0.00 0.00 41.26 4.10
6165 7350 3.437049 CGGAGATCTATGTATGCTCGACA 59.563 47.826 0.00 0.00 0.00 4.35
6170 7355 5.126869 CCAAGATCGGAGATCTATGTATGCT 59.873 44.000 12.31 0.00 45.12 3.79
6178 7363 2.242926 CAGGCCAAGATCGGAGATCTA 58.757 52.381 5.01 0.00 45.12 1.98
6195 7380 3.804873 GGCTTCGCTATTCTAAGAACAGG 59.195 47.826 0.00 0.00 0.00 4.00
6198 7383 2.795470 CGGGCTTCGCTATTCTAAGAAC 59.205 50.000 0.00 0.00 0.00 3.01
6203 7388 0.249322 GCACGGGCTTCGCTATTCTA 60.249 55.000 0.00 0.00 43.89 2.10
6204 7389 1.521681 GCACGGGCTTCGCTATTCT 60.522 57.895 0.00 0.00 43.89 2.40
6262 7447 1.137086 CCATGTTCTCCACCCTACGAG 59.863 57.143 0.00 0.00 0.00 4.18
6265 7450 0.912486 AGCCATGTTCTCCACCCTAC 59.088 55.000 0.00 0.00 0.00 3.18
6266 7451 0.911769 CAGCCATGTTCTCCACCCTA 59.088 55.000 0.00 0.00 0.00 3.53
6267 7452 0.842030 TCAGCCATGTTCTCCACCCT 60.842 55.000 0.00 0.00 0.00 4.34
6268 7453 0.038166 TTCAGCCATGTTCTCCACCC 59.962 55.000 0.00 0.00 0.00 4.61
6271 7456 2.885135 ACATTCAGCCATGTTCTCCA 57.115 45.000 0.00 0.00 33.29 3.86
6272 7457 2.945668 GGTACATTCAGCCATGTTCTCC 59.054 50.000 0.00 0.00 38.40 3.71
6274 7459 2.236146 TCGGTACATTCAGCCATGTTCT 59.764 45.455 0.00 0.00 38.40 3.01
6284 7470 1.673626 GGCTCGGTTTCGGTACATTCA 60.674 52.381 0.00 0.00 36.95 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.