Multiple sequence alignment - TraesCS5D01G133400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G133400 chr5D 100.000 2824 0 0 1 2824 213128137 213130960 0.000000e+00 5216.0
1 TraesCS5D01G133400 chr5D 89.053 1014 78 15 860 1870 212627070 212628053 0.000000e+00 1227.0
2 TraesCS5D01G133400 chr5D 87.444 223 19 2 1875 2096 219540290 219540504 6.040000e-62 248.0
3 TraesCS5D01G133400 chr5D 87.264 212 21 3 1875 2085 212633422 212633628 1.310000e-58 237.0
4 TraesCS5D01G133400 chr5D 73.745 518 110 23 1103 1610 528230612 528230111 2.240000e-41 180.0
5 TraesCS5D01G133400 chr5D 96.078 51 1 1 242 291 212626949 212626999 6.480000e-12 82.4
6 TraesCS5D01G133400 chr5A 96.649 2059 37 12 784 2824 276981132 276979088 0.000000e+00 3391.0
7 TraesCS5D01G133400 chr5A 89.737 799 55 11 809 1606 276111550 276112322 0.000000e+00 996.0
8 TraesCS5D01G133400 chr5A 86.909 275 29 5 1598 1869 276113897 276114167 4.570000e-78 302.0
9 TraesCS5D01G133400 chr5A 89.189 222 16 1 1875 2096 276123629 276123842 1.290000e-68 270.0
10 TraesCS5D01G133400 chr5A 83.871 279 36 5 167 445 276981433 276981164 1.000000e-64 257.0
11 TraesCS5D01G133400 chr5A 94.643 56 1 2 237 291 276111451 276111505 5.010000e-13 86.1
12 TraesCS5D01G133400 chr5B 97.568 1069 14 3 805 1869 227120709 227121769 0.000000e+00 1820.0
13 TraesCS5D01G133400 chr5B 96.051 861 16 6 1866 2726 227121818 227122660 0.000000e+00 1386.0
14 TraesCS5D01G133400 chr5B 86.944 1080 96 25 799 1870 226759033 226760075 0.000000e+00 1171.0
15 TraesCS5D01G133400 chr5B 95.652 115 3 2 2711 2824 227122675 227122788 1.730000e-42 183.0
16 TraesCS5D01G133400 chr5B 85.635 181 14 8 243 423 227120483 227120651 2.240000e-41 180.0
17 TraesCS5D01G133400 chr5B 82.174 230 17 7 1 206 227117406 227117635 2.890000e-40 176.0
18 TraesCS5D01G133400 chr5B 97.826 46 0 1 243 287 226758952 226758997 8.390000e-11 78.7
19 TraesCS5D01G133400 chr4A 84.923 650 73 14 1069 1698 487868994 487868350 3.970000e-178 634.0
20 TraesCS5D01G133400 chr4A 81.538 130 20 4 314 441 632755542 632755669 1.380000e-18 104.0
21 TraesCS5D01G133400 chr4D 84.308 650 77 15 1069 1698 93841194 93841838 1.860000e-171 612.0
22 TraesCS5D01G133400 chr4B 84.154 650 78 15 1069 1698 132331565 132332209 8.650000e-170 606.0
23 TraesCS5D01G133400 chr3D 89.881 336 30 3 437 771 578745025 578745357 2.010000e-116 429.0
24 TraesCS5D01G133400 chr2B 89.024 328 36 0 443 770 636877577 636877904 9.420000e-110 407.0
25 TraesCS5D01G133400 chr2B 88.110 328 39 0 443 770 463439204 463439531 9.490000e-105 390.0
26 TraesCS5D01G133400 chr2B 87.240 337 43 0 443 779 680445743 680445407 4.410000e-103 385.0
27 TraesCS5D01G133400 chr1B 89.058 329 34 2 443 770 26425108 26425435 9.420000e-110 407.0
28 TraesCS5D01G133400 chr6A 87.647 340 42 0 440 779 608655989 608656328 2.040000e-106 396.0
29 TraesCS5D01G133400 chr2D 87.537 337 42 0 443 779 606149663 606149999 9.490000e-105 390.0
30 TraesCS5D01G133400 chr2D 87.200 125 14 2 322 445 608484859 608484736 1.050000e-29 141.0
31 TraesCS5D01G133400 chr7B 87.463 335 41 1 444 778 533310580 533310247 4.410000e-103 385.0
32 TraesCS5D01G133400 chr1D 87.768 327 40 0 444 770 272535880 272536206 1.590000e-102 383.0
33 TraesCS5D01G133400 chr6B 82.759 116 17 2 330 442 93996590 93996705 1.790000e-17 100.0
34 TraesCS5D01G133400 chr2A 82.114 123 17 5 327 444 15601502 15601380 1.790000e-17 100.0
35 TraesCS5D01G133400 chr7D 76.923 117 20 4 329 442 43785838 43785950 3.040000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G133400 chr5D 213128137 213130960 2823 False 5216.000000 5216 100.000000 1 2824 1 chr5D.!!$F2 2823
1 TraesCS5D01G133400 chr5D 212626949 212628053 1104 False 654.700000 1227 92.565500 242 1870 2 chr5D.!!$F4 1628
2 TraesCS5D01G133400 chr5A 276979088 276981433 2345 True 1824.000000 3391 90.260000 167 2824 2 chr5A.!!$R1 2657
3 TraesCS5D01G133400 chr5A 276111451 276114167 2716 False 461.366667 996 90.429667 237 1869 3 chr5A.!!$F2 1632
4 TraesCS5D01G133400 chr5B 227117406 227122788 5382 False 749.000000 1820 91.416000 1 2824 5 chr5B.!!$F2 2823
5 TraesCS5D01G133400 chr5B 226758952 226760075 1123 False 624.850000 1171 92.385000 243 1870 2 chr5B.!!$F1 1627
6 TraesCS5D01G133400 chr4A 487868350 487868994 644 True 634.000000 634 84.923000 1069 1698 1 chr4A.!!$R1 629
7 TraesCS5D01G133400 chr4D 93841194 93841838 644 False 612.000000 612 84.308000 1069 1698 1 chr4D.!!$F1 629
8 TraesCS5D01G133400 chr4B 132331565 132332209 644 False 606.000000 606 84.154000 1069 1698 1 chr4B.!!$F1 629

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
985 3860 0.036875 CACCAAACCTCCTCCCACTC 59.963 60.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2019 6558 3.01025 AGTCCCCATTTGTACTTTCTCCC 59.99 47.826 0.0 0.0 0.0 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 68 2.936498 ACTATGGTGCACGCATTTCTAC 59.064 45.455 20.96 2.17 0.00 2.59
67 69 1.094785 ATGGTGCACGCATTTCTACC 58.905 50.000 11.45 0.00 0.00 3.18
69 71 1.017177 GGTGCACGCATTTCTACCGA 61.017 55.000 11.45 0.00 0.00 4.69
73 75 0.725117 CACGCATTTCTACCGAACCC 59.275 55.000 0.00 0.00 0.00 4.11
81 83 0.325296 TCTACCGAACCCTGCCATCT 60.325 55.000 0.00 0.00 0.00 2.90
95 97 4.250464 CTGCCATCTTACGACCTAAAACA 58.750 43.478 0.00 0.00 0.00 2.83
104 106 1.600485 CGACCTAAAACAACGCCTTGT 59.400 47.619 0.00 0.00 42.81 3.16
108 110 2.031157 CCTAAAACAACGCCTTGTCCTG 60.031 50.000 1.42 0.00 39.88 3.86
117 119 1.598701 GCCTTGTCCTGCACAATCCC 61.599 60.000 0.00 0.00 44.32 3.85
128 130 2.238521 GCACAATCCCTTTCCTGTGAA 58.761 47.619 5.28 0.00 41.35 3.18
129 131 2.627699 GCACAATCCCTTTCCTGTGAAA 59.372 45.455 5.28 0.00 41.35 2.69
130 132 3.552890 GCACAATCCCTTTCCTGTGAAAC 60.553 47.826 5.28 0.00 41.35 2.78
132 134 5.070001 CACAATCCCTTTCCTGTGAAACTA 58.930 41.667 0.00 0.00 41.35 2.24
142 166 6.488769 TTCCTGTGAAACTACCTAAGTGAA 57.511 37.500 0.00 0.00 38.88 3.18
339 3196 2.066999 GCTTCGATGAGGGAGGGGT 61.067 63.158 1.89 0.00 0.00 4.95
346 3203 1.350351 GATGAGGGAGGGGTGATGATG 59.650 57.143 0.00 0.00 0.00 3.07
350 3207 2.443394 GGAGGGGTGATGATGGCGA 61.443 63.158 0.00 0.00 0.00 5.54
351 3208 1.227674 GAGGGGTGATGATGGCGAC 60.228 63.158 0.00 0.00 0.00 5.19
385 3242 0.892755 CCCCACTGCTTGTAGTCGTA 59.107 55.000 0.00 0.00 0.00 3.43
387 3244 1.271379 CCCACTGCTTGTAGTCGTACA 59.729 52.381 0.00 0.00 37.38 2.90
405 3262 4.201980 CGTACAAGATGGTCAACGGATCTA 60.202 45.833 0.00 0.00 0.00 1.98
467 3324 5.514274 TTTTTGCGAGAAACTTCCAATCT 57.486 34.783 0.00 0.00 0.00 2.40
468 3325 6.627395 TTTTTGCGAGAAACTTCCAATCTA 57.373 33.333 0.00 0.00 0.00 1.98
475 3332 6.481644 GCGAGAAACTTCCAATCTATTCATCT 59.518 38.462 0.00 0.00 0.00 2.90
476 3333 7.011857 GCGAGAAACTTCCAATCTATTCATCTT 59.988 37.037 0.00 0.00 0.00 2.40
477 3334 8.547069 CGAGAAACTTCCAATCTATTCATCTTC 58.453 37.037 0.00 0.00 0.00 2.87
479 3336 9.745018 AGAAACTTCCAATCTATTCATCTTCAA 57.255 29.630 0.00 0.00 0.00 2.69
482 3339 9.690913 AACTTCCAATCTATTCATCTTCAATCA 57.309 29.630 0.00 0.00 0.00 2.57
483 3340 9.863650 ACTTCCAATCTATTCATCTTCAATCAT 57.136 29.630 0.00 0.00 0.00 2.45
485 3342 8.631480 TCCAATCTATTCATCTTCAATCATGG 57.369 34.615 0.00 0.00 0.00 3.66
486 3343 7.176165 TCCAATCTATTCATCTTCAATCATGGC 59.824 37.037 0.00 0.00 0.00 4.40
487 3344 7.039993 CCAATCTATTCATCTTCAATCATGGCA 60.040 37.037 0.00 0.00 0.00 4.92
488 3345 7.689446 ATCTATTCATCTTCAATCATGGCAG 57.311 36.000 0.00 0.00 0.00 4.85
489 3346 6.598503 TCTATTCATCTTCAATCATGGCAGT 58.401 36.000 0.00 0.00 0.00 4.40
490 3347 7.738847 TCTATTCATCTTCAATCATGGCAGTA 58.261 34.615 0.00 0.00 0.00 2.74
491 3348 6.630444 ATTCATCTTCAATCATGGCAGTAC 57.370 37.500 0.00 0.00 0.00 2.73
492 3349 5.101648 TCATCTTCAATCATGGCAGTACA 57.898 39.130 0.00 0.00 0.00 2.90
493 3350 5.499313 TCATCTTCAATCATGGCAGTACAA 58.501 37.500 0.00 0.00 0.00 2.41
494 3351 5.945191 TCATCTTCAATCATGGCAGTACAAA 59.055 36.000 0.00 0.00 0.00 2.83
495 3352 5.885230 TCTTCAATCATGGCAGTACAAAG 57.115 39.130 0.00 0.00 0.00 2.77
496 3353 5.559770 TCTTCAATCATGGCAGTACAAAGA 58.440 37.500 0.00 0.00 0.00 2.52
497 3354 6.003326 TCTTCAATCATGGCAGTACAAAGAA 58.997 36.000 0.00 0.00 0.00 2.52
498 3355 5.627499 TCAATCATGGCAGTACAAAGAAC 57.373 39.130 0.00 0.00 0.00 3.01
499 3356 5.069318 TCAATCATGGCAGTACAAAGAACA 58.931 37.500 0.00 0.00 0.00 3.18
500 3357 5.534278 TCAATCATGGCAGTACAAAGAACAA 59.466 36.000 0.00 0.00 0.00 2.83
501 3358 4.829064 TCATGGCAGTACAAAGAACAAC 57.171 40.909 0.00 0.00 0.00 3.32
502 3359 4.203226 TCATGGCAGTACAAAGAACAACA 58.797 39.130 0.00 0.00 0.00 3.33
503 3360 4.275689 TCATGGCAGTACAAAGAACAACAG 59.724 41.667 0.00 0.00 0.00 3.16
504 3361 3.879998 TGGCAGTACAAAGAACAACAGA 58.120 40.909 0.00 0.00 0.00 3.41
505 3362 3.876914 TGGCAGTACAAAGAACAACAGAG 59.123 43.478 0.00 0.00 0.00 3.35
506 3363 4.127171 GGCAGTACAAAGAACAACAGAGA 58.873 43.478 0.00 0.00 0.00 3.10
507 3364 4.757149 GGCAGTACAAAGAACAACAGAGAT 59.243 41.667 0.00 0.00 0.00 2.75
508 3365 5.932303 GGCAGTACAAAGAACAACAGAGATA 59.068 40.000 0.00 0.00 0.00 1.98
509 3366 6.426937 GGCAGTACAAAGAACAACAGAGATAA 59.573 38.462 0.00 0.00 0.00 1.75
510 3367 7.119846 GGCAGTACAAAGAACAACAGAGATAAT 59.880 37.037 0.00 0.00 0.00 1.28
511 3368 9.151471 GCAGTACAAAGAACAACAGAGATAATA 57.849 33.333 0.00 0.00 0.00 0.98
536 3393 6.730960 AAATTGCAATCATGTTCATGAACC 57.269 33.333 30.66 16.50 40.46 3.62
537 3394 4.868314 TTGCAATCATGTTCATGAACCA 57.132 36.364 30.66 20.55 40.46 3.67
538 3395 4.177165 TGCAATCATGTTCATGAACCAC 57.823 40.909 30.66 12.13 40.46 4.16
539 3396 3.056678 TGCAATCATGTTCATGAACCACC 60.057 43.478 30.66 10.98 40.46 4.61
540 3397 3.194116 GCAATCATGTTCATGAACCACCT 59.806 43.478 30.66 13.85 40.46 4.00
541 3398 4.398988 GCAATCATGTTCATGAACCACCTA 59.601 41.667 30.66 15.64 40.46 3.08
542 3399 5.449588 GCAATCATGTTCATGAACCACCTAG 60.450 44.000 30.66 19.09 40.46 3.02
543 3400 3.609853 TCATGTTCATGAACCACCTAGC 58.390 45.455 30.66 8.56 40.46 3.42
544 3401 2.093306 TGTTCATGAACCACCTAGCG 57.907 50.000 30.66 0.00 40.46 4.26
545 3402 1.621317 TGTTCATGAACCACCTAGCGA 59.379 47.619 30.66 10.25 40.46 4.93
546 3403 2.000447 GTTCATGAACCACCTAGCGAC 59.000 52.381 25.26 0.00 35.36 5.19
547 3404 0.172578 TCATGAACCACCTAGCGACG 59.827 55.000 0.00 0.00 0.00 5.12
548 3405 0.172578 CATGAACCACCTAGCGACGA 59.827 55.000 0.00 0.00 0.00 4.20
549 3406 0.172803 ATGAACCACCTAGCGACGAC 59.827 55.000 0.00 0.00 0.00 4.34
550 3407 0.892358 TGAACCACCTAGCGACGACT 60.892 55.000 0.00 0.00 0.00 4.18
551 3408 1.089920 GAACCACCTAGCGACGACTA 58.910 55.000 0.00 0.00 0.00 2.59
552 3409 0.807496 AACCACCTAGCGACGACTAC 59.193 55.000 0.00 0.00 0.00 2.73
553 3410 0.321919 ACCACCTAGCGACGACTACA 60.322 55.000 0.00 0.00 0.00 2.74
554 3411 0.806868 CCACCTAGCGACGACTACAA 59.193 55.000 0.00 0.00 0.00 2.41
555 3412 1.200716 CCACCTAGCGACGACTACAAA 59.799 52.381 0.00 0.00 0.00 2.83
556 3413 2.248487 CACCTAGCGACGACTACAAAC 58.752 52.381 0.00 0.00 0.00 2.93
557 3414 1.881973 ACCTAGCGACGACTACAAACA 59.118 47.619 0.00 0.00 0.00 2.83
558 3415 2.248487 CCTAGCGACGACTACAAACAC 58.752 52.381 0.00 0.00 0.00 3.32
559 3416 2.095364 CCTAGCGACGACTACAAACACT 60.095 50.000 0.00 0.00 0.00 3.55
560 3417 1.767289 AGCGACGACTACAAACACTG 58.233 50.000 0.00 0.00 0.00 3.66
561 3418 1.335810 AGCGACGACTACAAACACTGA 59.664 47.619 0.00 0.00 0.00 3.41
562 3419 2.121786 GCGACGACTACAAACACTGAA 58.878 47.619 0.00 0.00 0.00 3.02
563 3420 2.153247 GCGACGACTACAAACACTGAAG 59.847 50.000 0.00 0.00 0.00 3.02
564 3421 2.153247 CGACGACTACAAACACTGAAGC 59.847 50.000 0.00 0.00 0.00 3.86
565 3422 2.124903 ACGACTACAAACACTGAAGCG 58.875 47.619 0.00 0.00 0.00 4.68
566 3423 2.223641 ACGACTACAAACACTGAAGCGA 60.224 45.455 0.00 0.00 0.00 4.93
567 3424 2.405357 CGACTACAAACACTGAAGCGAG 59.595 50.000 0.00 0.00 0.00 5.03
568 3425 2.135933 ACTACAAACACTGAAGCGAGC 58.864 47.619 0.00 0.00 0.00 5.03
569 3426 1.461127 CTACAAACACTGAAGCGAGCC 59.539 52.381 0.00 0.00 0.00 4.70
570 3427 0.463654 ACAAACACTGAAGCGAGCCA 60.464 50.000 0.00 0.00 0.00 4.75
571 3428 0.662619 CAAACACTGAAGCGAGCCAA 59.337 50.000 0.00 0.00 0.00 4.52
572 3429 1.065401 CAAACACTGAAGCGAGCCAAA 59.935 47.619 0.00 0.00 0.00 3.28
573 3430 0.947244 AACACTGAAGCGAGCCAAAG 59.053 50.000 0.00 0.00 0.00 2.77
574 3431 0.886490 ACACTGAAGCGAGCCAAAGG 60.886 55.000 0.00 0.00 0.00 3.11
598 3455 4.451150 GCCGTCATCGCACCTCCA 62.451 66.667 0.00 0.00 35.54 3.86
599 3456 2.501128 CCGTCATCGCACCTCCAT 59.499 61.111 0.00 0.00 35.54 3.41
600 3457 1.592669 CCGTCATCGCACCTCCATC 60.593 63.158 0.00 0.00 35.54 3.51
601 3458 1.141665 CGTCATCGCACCTCCATCA 59.858 57.895 0.00 0.00 0.00 3.07
602 3459 1.148157 CGTCATCGCACCTCCATCAC 61.148 60.000 0.00 0.00 0.00 3.06
603 3460 0.811616 GTCATCGCACCTCCATCACC 60.812 60.000 0.00 0.00 0.00 4.02
604 3461 1.884464 CATCGCACCTCCATCACCG 60.884 63.158 0.00 0.00 0.00 4.94
605 3462 2.058001 ATCGCACCTCCATCACCGA 61.058 57.895 0.00 0.00 0.00 4.69
606 3463 1.613317 ATCGCACCTCCATCACCGAA 61.613 55.000 0.00 0.00 0.00 4.30
607 3464 1.811266 CGCACCTCCATCACCGAAG 60.811 63.158 0.00 0.00 0.00 3.79
608 3465 2.109126 GCACCTCCATCACCGAAGC 61.109 63.158 0.00 0.00 0.00 3.86
609 3466 1.296392 CACCTCCATCACCGAAGCA 59.704 57.895 0.00 0.00 0.00 3.91
610 3467 0.742281 CACCTCCATCACCGAAGCAG 60.742 60.000 0.00 0.00 0.00 4.24
611 3468 1.153289 CCTCCATCACCGAAGCAGG 60.153 63.158 0.00 0.00 37.30 4.85
612 3469 1.153289 CTCCATCACCGAAGCAGGG 60.153 63.158 0.00 0.00 35.02 4.45
613 3470 2.825836 CCATCACCGAAGCAGGGC 60.826 66.667 0.00 0.00 35.02 5.19
614 3471 2.046023 CATCACCGAAGCAGGGCA 60.046 61.111 0.00 0.00 35.02 5.36
615 3472 1.675310 CATCACCGAAGCAGGGCAA 60.675 57.895 0.00 0.00 35.02 4.52
616 3473 1.074775 ATCACCGAAGCAGGGCAAA 59.925 52.632 0.00 0.00 35.02 3.68
617 3474 1.244019 ATCACCGAAGCAGGGCAAAC 61.244 55.000 0.00 0.00 35.02 2.93
618 3475 2.597510 ACCGAAGCAGGGCAAACC 60.598 61.111 0.00 0.00 40.67 3.27
629 3486 2.194201 GGGCAAACCTTGTAGTAGCA 57.806 50.000 0.00 0.00 35.85 3.49
630 3487 2.084546 GGGCAAACCTTGTAGTAGCAG 58.915 52.381 0.00 0.00 35.85 4.24
631 3488 2.552373 GGGCAAACCTTGTAGTAGCAGT 60.552 50.000 0.00 0.00 35.85 4.40
632 3489 2.742589 GGCAAACCTTGTAGTAGCAGTC 59.257 50.000 0.00 0.00 0.00 3.51
633 3490 3.399330 GCAAACCTTGTAGTAGCAGTCA 58.601 45.455 0.00 0.00 0.00 3.41
634 3491 3.433615 GCAAACCTTGTAGTAGCAGTCAG 59.566 47.826 0.00 0.00 0.00 3.51
635 3492 4.632153 CAAACCTTGTAGTAGCAGTCAGT 58.368 43.478 0.00 0.00 0.00 3.41
636 3493 4.522722 AACCTTGTAGTAGCAGTCAGTC 57.477 45.455 0.00 0.00 0.00 3.51
637 3494 2.488545 ACCTTGTAGTAGCAGTCAGTCG 59.511 50.000 0.00 0.00 0.00 4.18
638 3495 2.159366 CCTTGTAGTAGCAGTCAGTCGG 60.159 54.545 0.00 0.00 0.00 4.79
639 3496 1.460504 TGTAGTAGCAGTCAGTCGGG 58.539 55.000 0.00 0.00 0.00 5.14
640 3497 1.003928 TGTAGTAGCAGTCAGTCGGGA 59.996 52.381 0.00 0.00 0.00 5.14
641 3498 2.089980 GTAGTAGCAGTCAGTCGGGAA 58.910 52.381 0.00 0.00 0.00 3.97
642 3499 1.178276 AGTAGCAGTCAGTCGGGAAG 58.822 55.000 0.00 0.00 0.00 3.46
643 3500 0.889306 GTAGCAGTCAGTCGGGAAGT 59.111 55.000 0.00 0.00 0.00 3.01
644 3501 1.135344 GTAGCAGTCAGTCGGGAAGTC 60.135 57.143 0.00 0.00 0.00 3.01
645 3502 1.444553 GCAGTCAGTCGGGAAGTCG 60.445 63.158 0.00 0.00 0.00 4.18
646 3503 1.957562 CAGTCAGTCGGGAAGTCGT 59.042 57.895 0.00 0.00 0.00 4.34
647 3504 0.109689 CAGTCAGTCGGGAAGTCGTC 60.110 60.000 0.00 0.00 0.00 4.20
648 3505 1.154263 GTCAGTCGGGAAGTCGTCG 60.154 63.158 0.00 0.00 0.00 5.12
649 3506 1.598962 TCAGTCGGGAAGTCGTCGT 60.599 57.895 0.00 0.00 0.00 4.34
650 3507 1.442184 CAGTCGGGAAGTCGTCGTG 60.442 63.158 0.00 0.00 0.00 4.35
651 3508 2.804090 GTCGGGAAGTCGTCGTGC 60.804 66.667 0.00 0.00 0.00 5.34
652 3509 2.981909 TCGGGAAGTCGTCGTGCT 60.982 61.111 0.00 0.00 0.00 4.40
653 3510 1.672030 TCGGGAAGTCGTCGTGCTA 60.672 57.895 0.00 0.00 0.00 3.49
654 3511 1.210931 CGGGAAGTCGTCGTGCTAA 59.789 57.895 0.00 0.00 0.00 3.09
655 3512 0.797249 CGGGAAGTCGTCGTGCTAAG 60.797 60.000 0.00 0.00 0.00 2.18
656 3513 0.458025 GGGAAGTCGTCGTGCTAAGG 60.458 60.000 0.00 0.00 0.00 2.69
657 3514 1.077089 GGAAGTCGTCGTGCTAAGGC 61.077 60.000 0.00 0.00 39.26 4.35
658 3515 1.077089 GAAGTCGTCGTGCTAAGGCC 61.077 60.000 0.00 0.00 37.74 5.19
659 3516 2.502692 AAGTCGTCGTGCTAAGGCCC 62.503 60.000 0.00 0.00 37.74 5.80
660 3517 3.766691 TCGTCGTGCTAAGGCCCC 61.767 66.667 0.00 0.00 37.74 5.80
661 3518 4.832608 CGTCGTGCTAAGGCCCCC 62.833 72.222 0.00 0.00 37.74 5.40
662 3519 3.400054 GTCGTGCTAAGGCCCCCT 61.400 66.667 0.00 0.00 37.74 4.79
663 3520 2.062177 GTCGTGCTAAGGCCCCCTA 61.062 63.158 0.00 0.00 37.74 3.53
664 3521 1.760875 TCGTGCTAAGGCCCCCTAG 60.761 63.158 0.00 0.00 37.74 3.02
665 3522 2.808206 CGTGCTAAGGCCCCCTAGG 61.808 68.421 0.06 0.06 37.74 3.02
666 3523 1.384082 GTGCTAAGGCCCCCTAGGA 60.384 63.158 11.48 0.00 38.24 2.94
672 3529 2.918276 GGCCCCCTAGGACTAGCG 60.918 72.222 11.48 0.00 42.61 4.26
673 3530 3.617735 GCCCCCTAGGACTAGCGC 61.618 72.222 11.48 0.00 38.24 5.92
674 3531 2.123425 CCCCCTAGGACTAGCGCA 60.123 66.667 11.48 0.00 38.24 6.09
675 3532 2.499827 CCCCCTAGGACTAGCGCAC 61.500 68.421 11.48 0.00 38.24 5.34
676 3533 1.455959 CCCCTAGGACTAGCGCACT 60.456 63.158 11.48 1.70 33.47 4.40
677 3534 0.178998 CCCCTAGGACTAGCGCACTA 60.179 60.000 11.48 2.91 33.47 2.74
688 3545 2.500509 AGCGCACTAGAGTAGCAATC 57.499 50.000 11.47 0.00 34.66 2.67
689 3546 1.751351 AGCGCACTAGAGTAGCAATCA 59.249 47.619 11.47 0.00 34.66 2.57
690 3547 2.363680 AGCGCACTAGAGTAGCAATCAT 59.636 45.455 11.47 0.00 34.66 2.45
691 3548 2.728839 GCGCACTAGAGTAGCAATCATC 59.271 50.000 0.30 0.00 33.18 2.92
692 3549 2.976509 CGCACTAGAGTAGCAATCATCG 59.023 50.000 0.00 0.00 0.00 3.84
693 3550 2.728839 GCACTAGAGTAGCAATCATCGC 59.271 50.000 0.00 0.00 0.00 4.58
694 3551 3.312828 CACTAGAGTAGCAATCATCGCC 58.687 50.000 0.00 0.00 0.00 5.54
695 3552 2.959030 ACTAGAGTAGCAATCATCGCCA 59.041 45.455 0.00 0.00 0.00 5.69
696 3553 2.988010 AGAGTAGCAATCATCGCCAA 57.012 45.000 0.00 0.00 0.00 4.52
697 3554 3.482156 AGAGTAGCAATCATCGCCAAT 57.518 42.857 0.00 0.00 0.00 3.16
698 3555 3.136763 AGAGTAGCAATCATCGCCAATG 58.863 45.455 0.00 0.00 36.65 2.82
706 3563 2.408271 TCATCGCCAATGAAGAAGCT 57.592 45.000 0.00 0.00 41.49 3.74
707 3564 2.283298 TCATCGCCAATGAAGAAGCTC 58.717 47.619 0.00 0.00 41.49 4.09
708 3565 1.004185 CATCGCCAATGAAGAAGCTCG 60.004 52.381 0.00 0.00 37.59 5.03
709 3566 0.037326 TCGCCAATGAAGAAGCTCGT 60.037 50.000 0.00 0.00 0.00 4.18
710 3567 1.203758 TCGCCAATGAAGAAGCTCGTA 59.796 47.619 0.00 0.00 0.00 3.43
711 3568 1.590238 CGCCAATGAAGAAGCTCGTAG 59.410 52.381 0.00 0.00 0.00 3.51
712 3569 2.735444 CGCCAATGAAGAAGCTCGTAGA 60.735 50.000 0.00 0.00 0.00 2.59
713 3570 3.462021 GCCAATGAAGAAGCTCGTAGAT 58.538 45.455 0.00 0.00 33.89 1.98
714 3571 3.492756 GCCAATGAAGAAGCTCGTAGATC 59.507 47.826 0.00 0.00 33.89 2.75
715 3572 4.686972 CCAATGAAGAAGCTCGTAGATCA 58.313 43.478 0.00 0.00 33.89 2.92
716 3573 4.744137 CCAATGAAGAAGCTCGTAGATCAG 59.256 45.833 0.00 0.00 33.89 2.90
717 3574 5.451103 CCAATGAAGAAGCTCGTAGATCAGA 60.451 44.000 0.00 0.00 33.89 3.27
718 3575 5.843673 ATGAAGAAGCTCGTAGATCAGAA 57.156 39.130 0.00 0.00 33.89 3.02
719 3576 5.242069 TGAAGAAGCTCGTAGATCAGAAG 57.758 43.478 0.00 0.00 33.89 2.85
720 3577 4.097135 TGAAGAAGCTCGTAGATCAGAAGG 59.903 45.833 0.00 0.00 33.89 3.46
721 3578 2.955660 AGAAGCTCGTAGATCAGAAGGG 59.044 50.000 0.00 0.00 33.89 3.95
722 3579 2.445682 AGCTCGTAGATCAGAAGGGT 57.554 50.000 0.00 0.00 33.89 4.34
723 3580 2.303175 AGCTCGTAGATCAGAAGGGTC 58.697 52.381 0.00 0.00 33.89 4.46
724 3581 2.025155 GCTCGTAGATCAGAAGGGTCA 58.975 52.381 0.00 0.00 33.89 4.02
725 3582 2.427453 GCTCGTAGATCAGAAGGGTCAA 59.573 50.000 0.00 0.00 33.89 3.18
726 3583 3.119101 GCTCGTAGATCAGAAGGGTCAAA 60.119 47.826 0.00 0.00 33.89 2.69
727 3584 4.425520 CTCGTAGATCAGAAGGGTCAAAC 58.574 47.826 0.00 0.00 33.89 2.93
728 3585 3.194968 TCGTAGATCAGAAGGGTCAAACC 59.805 47.826 0.00 0.00 37.60 3.27
729 3586 3.195825 CGTAGATCAGAAGGGTCAAACCT 59.804 47.826 0.00 0.00 44.56 3.50
730 3587 3.710209 AGATCAGAAGGGTCAAACCTG 57.290 47.619 0.00 0.00 40.87 4.00
731 3588 2.982488 AGATCAGAAGGGTCAAACCTGT 59.018 45.455 0.00 0.00 40.87 4.00
732 3589 4.168101 AGATCAGAAGGGTCAAACCTGTA 58.832 43.478 0.00 0.00 40.87 2.74
733 3590 4.597507 AGATCAGAAGGGTCAAACCTGTAA 59.402 41.667 0.00 0.00 40.87 2.41
734 3591 4.781775 TCAGAAGGGTCAAACCTGTAAA 57.218 40.909 0.00 0.00 40.87 2.01
735 3592 4.457466 TCAGAAGGGTCAAACCTGTAAAC 58.543 43.478 0.00 0.00 40.87 2.01
736 3593 4.080243 TCAGAAGGGTCAAACCTGTAAACA 60.080 41.667 0.00 0.00 40.87 2.83
737 3594 4.036380 CAGAAGGGTCAAACCTGTAAACAC 59.964 45.833 0.00 0.00 40.87 3.32
738 3595 2.940158 AGGGTCAAACCTGTAAACACC 58.060 47.619 0.00 0.00 40.04 4.16
739 3596 1.958579 GGGTCAAACCTGTAAACACCC 59.041 52.381 0.00 0.00 38.64 4.61
740 3597 2.657143 GGTCAAACCTGTAAACACCCA 58.343 47.619 0.00 0.00 34.73 4.51
741 3598 3.025262 GGTCAAACCTGTAAACACCCAA 58.975 45.455 0.00 0.00 34.73 4.12
742 3599 3.447944 GGTCAAACCTGTAAACACCCAAA 59.552 43.478 0.00 0.00 34.73 3.28
743 3600 4.426416 GTCAAACCTGTAAACACCCAAAC 58.574 43.478 0.00 0.00 0.00 2.93
744 3601 4.082136 GTCAAACCTGTAAACACCCAAACA 60.082 41.667 0.00 0.00 0.00 2.83
745 3602 4.527038 TCAAACCTGTAAACACCCAAACAA 59.473 37.500 0.00 0.00 0.00 2.83
746 3603 5.011738 TCAAACCTGTAAACACCCAAACAAA 59.988 36.000 0.00 0.00 0.00 2.83
747 3604 4.729227 ACCTGTAAACACCCAAACAAAG 57.271 40.909 0.00 0.00 0.00 2.77
748 3605 4.345854 ACCTGTAAACACCCAAACAAAGA 58.654 39.130 0.00 0.00 0.00 2.52
749 3606 4.158949 ACCTGTAAACACCCAAACAAAGAC 59.841 41.667 0.00 0.00 0.00 3.01
750 3607 4.347813 CTGTAAACACCCAAACAAAGACG 58.652 43.478 0.00 0.00 0.00 4.18
751 3608 4.008330 TGTAAACACCCAAACAAAGACGA 58.992 39.130 0.00 0.00 0.00 4.20
752 3609 4.458295 TGTAAACACCCAAACAAAGACGAA 59.542 37.500 0.00 0.00 0.00 3.85
753 3610 3.497297 AACACCCAAACAAAGACGAAC 57.503 42.857 0.00 0.00 0.00 3.95
754 3611 1.399089 ACACCCAAACAAAGACGAACG 59.601 47.619 0.00 0.00 0.00 3.95
755 3612 1.666700 CACCCAAACAAAGACGAACGA 59.333 47.619 0.14 0.00 0.00 3.85
756 3613 2.096174 CACCCAAACAAAGACGAACGAA 59.904 45.455 0.14 0.00 0.00 3.85
757 3614 2.353579 ACCCAAACAAAGACGAACGAAG 59.646 45.455 0.14 0.00 0.00 3.79
758 3615 2.610374 CCCAAACAAAGACGAACGAAGA 59.390 45.455 0.14 0.00 0.00 2.87
759 3616 3.545426 CCCAAACAAAGACGAACGAAGAC 60.545 47.826 0.14 0.00 0.00 3.01
760 3617 3.545426 CCAAACAAAGACGAACGAAGACC 60.545 47.826 0.14 0.00 0.00 3.85
761 3618 1.484356 ACAAAGACGAACGAAGACCG 58.516 50.000 0.14 0.00 45.44 4.79
762 3619 1.066002 ACAAAGACGAACGAAGACCGA 59.934 47.619 0.14 0.00 41.76 4.69
763 3620 2.121786 CAAAGACGAACGAAGACCGAA 58.878 47.619 0.14 0.00 41.76 4.30
764 3621 2.719426 AAGACGAACGAAGACCGAAT 57.281 45.000 0.14 0.00 41.76 3.34
765 3622 2.259505 AGACGAACGAAGACCGAATC 57.740 50.000 0.14 0.00 41.76 2.52
766 3623 1.135460 AGACGAACGAAGACCGAATCC 60.135 52.381 0.14 0.00 41.76 3.01
767 3624 0.599558 ACGAACGAAGACCGAATCCA 59.400 50.000 0.14 0.00 41.76 3.41
768 3625 1.000060 ACGAACGAAGACCGAATCCAA 60.000 47.619 0.14 0.00 41.76 3.53
769 3626 2.063266 CGAACGAAGACCGAATCCAAA 58.937 47.619 0.00 0.00 41.76 3.28
770 3627 2.159881 CGAACGAAGACCGAATCCAAAC 60.160 50.000 0.00 0.00 41.76 2.93
771 3628 1.804601 ACGAAGACCGAATCCAAACC 58.195 50.000 0.00 0.00 41.76 3.27
772 3629 0.719465 CGAAGACCGAATCCAAACCG 59.281 55.000 0.00 0.00 41.76 4.44
773 3630 1.670674 CGAAGACCGAATCCAAACCGA 60.671 52.381 0.00 0.00 41.76 4.69
774 3631 2.629051 GAAGACCGAATCCAAACCGAT 58.371 47.619 0.00 0.00 0.00 4.18
775 3632 2.024176 AGACCGAATCCAAACCGATG 57.976 50.000 0.00 0.00 0.00 3.84
776 3633 0.377203 GACCGAATCCAAACCGATGC 59.623 55.000 0.00 0.00 0.00 3.91
777 3634 0.322098 ACCGAATCCAAACCGATGCA 60.322 50.000 0.00 0.00 0.00 3.96
778 3635 0.098728 CCGAATCCAAACCGATGCAC 59.901 55.000 0.00 0.00 0.00 4.57
779 3636 0.247655 CGAATCCAAACCGATGCACG 60.248 55.000 0.00 0.00 42.18 5.34
780 3637 0.802494 GAATCCAAACCGATGCACGT 59.198 50.000 0.00 0.00 40.78 4.49
781 3638 0.802494 AATCCAAACCGATGCACGTC 59.198 50.000 0.00 0.00 40.78 4.34
782 3639 1.024579 ATCCAAACCGATGCACGTCC 61.025 55.000 0.00 0.00 40.78 4.79
783 3640 1.963855 CCAAACCGATGCACGTCCA 60.964 57.895 0.00 0.00 40.78 4.02
784 3641 1.497278 CAAACCGATGCACGTCCAG 59.503 57.895 0.00 0.00 40.78 3.86
787 3644 0.250124 AACCGATGCACGTCCAGAAA 60.250 50.000 0.00 0.00 40.78 2.52
960 3821 0.754957 TGCTTCCCAAACACCACAGG 60.755 55.000 0.00 0.00 0.00 4.00
985 3860 0.036875 CACCAAACCTCCTCCCACTC 59.963 60.000 0.00 0.00 0.00 3.51
1016 3891 4.464069 ACCACTCAGAATAAGAGCTCAC 57.536 45.455 17.77 1.80 36.58 3.51
1284 4174 2.039624 GCCTCCTCTCCACCTCCA 59.960 66.667 0.00 0.00 0.00 3.86
1445 4335 1.068055 GTCGACGTATGGTCACCAGTT 60.068 52.381 1.19 0.00 46.42 3.16
1607 6080 2.583441 CCTCTTCGTCACCTGCCCA 61.583 63.158 0.00 0.00 0.00 5.36
1748 6221 1.669999 GCCGGCGAGAGGTAGGTTTA 61.670 60.000 12.58 0.00 0.00 2.01
1758 6231 5.627040 CGAGAGGTAGGTTTATTCTTGGCTT 60.627 44.000 0.00 0.00 0.00 4.35
1759 6232 5.501156 AGAGGTAGGTTTATTCTTGGCTTG 58.499 41.667 0.00 0.00 0.00 4.01
1760 6233 5.014228 AGAGGTAGGTTTATTCTTGGCTTGT 59.986 40.000 0.00 0.00 0.00 3.16
1761 6234 6.214819 AGAGGTAGGTTTATTCTTGGCTTGTA 59.785 38.462 0.00 0.00 0.00 2.41
1762 6235 6.178324 AGGTAGGTTTATTCTTGGCTTGTAC 58.822 40.000 0.00 0.00 0.00 2.90
1763 6236 6.012771 AGGTAGGTTTATTCTTGGCTTGTACT 60.013 38.462 0.00 0.00 0.00 2.73
1764 6237 7.181485 AGGTAGGTTTATTCTTGGCTTGTACTA 59.819 37.037 0.00 0.00 0.00 1.82
1765 6238 7.279536 GGTAGGTTTATTCTTGGCTTGTACTAC 59.720 40.741 0.00 0.00 0.00 2.73
2019 6558 3.190118 GGTCTGAGATTTGGTGAAGCTTG 59.810 47.826 2.10 0.00 33.28 4.01
2120 6659 7.981102 CTCACATGGAGTTTGATCATATGAT 57.019 36.000 18.21 18.21 38.90 2.45
2185 6724 7.502226 TGTTTCTTTAATCCCTATATGTGCCAG 59.498 37.037 0.00 0.00 0.00 4.85
2302 6841 7.603651 AGTCATCAGTAGTTTAACAGTCGAAT 58.396 34.615 0.00 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 5.014544 TGGTCTCTGAATGAAAGGAAGGAAT 59.985 40.000 0.00 0.00 0.00 3.01
22 24 6.654161 AGTGAGATTTTCTTGGTCTCTGAATG 59.346 38.462 0.00 0.00 39.24 2.67
66 68 0.810031 CGTAAGATGGCAGGGTTCGG 60.810 60.000 0.00 0.00 43.02 4.30
67 69 0.174845 TCGTAAGATGGCAGGGTTCG 59.825 55.000 0.00 0.00 45.01 3.95
81 83 3.110447 AGGCGTTGTTTTAGGTCGTAA 57.890 42.857 0.00 0.00 0.00 3.18
95 97 1.453015 TTGTGCAGGACAAGGCGTT 60.453 52.632 2.84 0.00 39.78 4.84
104 106 1.075601 AGGAAAGGGATTGTGCAGGA 58.924 50.000 0.00 0.00 0.00 3.86
108 110 1.909700 TCACAGGAAAGGGATTGTGC 58.090 50.000 0.00 0.00 0.00 4.57
117 119 6.522054 TCACTTAGGTAGTTTCACAGGAAAG 58.478 40.000 0.00 0.00 43.35 2.62
128 130 3.497262 GCAGCGTTTTCACTTAGGTAGTT 59.503 43.478 0.00 0.00 33.85 2.24
129 131 3.064931 GCAGCGTTTTCACTTAGGTAGT 58.935 45.455 0.00 0.00 37.68 2.73
130 132 2.415512 GGCAGCGTTTTCACTTAGGTAG 59.584 50.000 0.00 0.00 0.00 3.18
132 134 1.202770 AGGCAGCGTTTTCACTTAGGT 60.203 47.619 0.00 0.00 0.00 3.08
171 196 2.107950 TAGTTGCTTTAGCGTGCCAT 57.892 45.000 0.00 0.00 45.83 4.40
204 229 9.915629 ATCTAGTCGGTTTCATAGCTAAATAAG 57.084 33.333 0.00 0.00 0.00 1.73
209 234 7.813148 GCATAATCTAGTCGGTTTCATAGCTAA 59.187 37.037 0.00 0.00 0.00 3.09
211 236 6.015010 AGCATAATCTAGTCGGTTTCATAGCT 60.015 38.462 0.00 0.00 0.00 3.32
214 239 8.635328 TGTTAGCATAATCTAGTCGGTTTCATA 58.365 33.333 0.00 0.00 0.00 2.15
215 240 7.438459 GTGTTAGCATAATCTAGTCGGTTTCAT 59.562 37.037 0.00 0.00 0.00 2.57
221 257 5.196341 TGGTGTTAGCATAATCTAGTCGG 57.804 43.478 0.00 0.00 0.00 4.79
365 3222 1.119574 ACGACTACAAGCAGTGGGGT 61.120 55.000 0.00 0.00 32.12 4.95
385 3242 4.023980 TCTAGATCCGTTGACCATCTTGT 58.976 43.478 0.00 0.00 0.00 3.16
387 3244 4.651503 ACATCTAGATCCGTTGACCATCTT 59.348 41.667 1.03 0.00 0.00 2.40
390 3247 6.672266 ATTACATCTAGATCCGTTGACCAT 57.328 37.500 1.03 0.00 0.00 3.55
445 3302 5.514274 AGATTGGAAGTTTCTCGCAAAAA 57.486 34.783 0.00 0.00 0.00 1.94
446 3303 6.817765 ATAGATTGGAAGTTTCTCGCAAAA 57.182 33.333 0.00 0.00 0.00 2.44
447 3304 6.429692 TGAATAGATTGGAAGTTTCTCGCAAA 59.570 34.615 0.00 0.00 0.00 3.68
448 3305 5.937540 TGAATAGATTGGAAGTTTCTCGCAA 59.062 36.000 0.00 0.00 0.00 4.85
449 3306 5.487433 TGAATAGATTGGAAGTTTCTCGCA 58.513 37.500 0.00 0.00 0.00 5.10
450 3307 6.481644 AGATGAATAGATTGGAAGTTTCTCGC 59.518 38.462 0.00 0.00 0.00 5.03
451 3308 8.430801 AAGATGAATAGATTGGAAGTTTCTCG 57.569 34.615 0.00 0.00 0.00 4.04
456 3313 9.690913 TGATTGAAGATGAATAGATTGGAAGTT 57.309 29.630 0.00 0.00 0.00 2.66
459 3316 9.074576 CCATGATTGAAGATGAATAGATTGGAA 57.925 33.333 0.00 0.00 0.00 3.53
460 3317 7.176165 GCCATGATTGAAGATGAATAGATTGGA 59.824 37.037 0.00 0.00 0.00 3.53
461 3318 7.039993 TGCCATGATTGAAGATGAATAGATTGG 60.040 37.037 0.00 0.00 0.00 3.16
462 3319 7.882179 TGCCATGATTGAAGATGAATAGATTG 58.118 34.615 0.00 0.00 0.00 2.67
464 3321 7.232188 ACTGCCATGATTGAAGATGAATAGAT 58.768 34.615 0.00 0.00 0.00 1.98
465 3322 6.598503 ACTGCCATGATTGAAGATGAATAGA 58.401 36.000 0.00 0.00 0.00 1.98
466 3323 6.879276 ACTGCCATGATTGAAGATGAATAG 57.121 37.500 0.00 0.00 0.00 1.73
467 3324 7.281841 TGTACTGCCATGATTGAAGATGAATA 58.718 34.615 0.00 0.00 0.00 1.75
468 3325 6.124340 TGTACTGCCATGATTGAAGATGAAT 58.876 36.000 0.00 0.00 0.00 2.57
475 3332 5.534278 TGTTCTTTGTACTGCCATGATTGAA 59.466 36.000 0.00 0.00 0.00 2.69
476 3333 5.069318 TGTTCTTTGTACTGCCATGATTGA 58.931 37.500 0.00 0.00 0.00 2.57
477 3334 5.375417 TGTTCTTTGTACTGCCATGATTG 57.625 39.130 0.00 0.00 0.00 2.67
479 3336 4.826733 TGTTGTTCTTTGTACTGCCATGAT 59.173 37.500 0.00 0.00 0.00 2.45
480 3337 4.203226 TGTTGTTCTTTGTACTGCCATGA 58.797 39.130 0.00 0.00 0.00 3.07
481 3338 4.275689 TCTGTTGTTCTTTGTACTGCCATG 59.724 41.667 0.00 0.00 0.00 3.66
482 3339 4.460263 TCTGTTGTTCTTTGTACTGCCAT 58.540 39.130 0.00 0.00 0.00 4.40
483 3340 3.876914 CTCTGTTGTTCTTTGTACTGCCA 59.123 43.478 0.00 0.00 0.00 4.92
484 3341 4.127171 TCTCTGTTGTTCTTTGTACTGCC 58.873 43.478 0.00 0.00 0.00 4.85
485 3342 5.931441 ATCTCTGTTGTTCTTTGTACTGC 57.069 39.130 0.00 0.00 0.00 4.40
510 3367 8.719648 GGTTCATGAACATGATTGCAATTTTTA 58.280 29.630 33.42 1.37 46.12 1.52
511 3368 7.228906 TGGTTCATGAACATGATTGCAATTTTT 59.771 29.630 33.42 4.55 46.12 1.94
512 3369 6.711194 TGGTTCATGAACATGATTGCAATTTT 59.289 30.769 33.42 4.91 46.12 1.82
513 3370 6.148150 GTGGTTCATGAACATGATTGCAATTT 59.852 34.615 33.42 3.36 46.12 1.82
514 3371 5.640357 GTGGTTCATGAACATGATTGCAATT 59.360 36.000 33.42 0.00 46.12 2.32
515 3372 5.172934 GTGGTTCATGAACATGATTGCAAT 58.827 37.500 33.42 12.83 46.12 3.56
516 3373 4.558178 GTGGTTCATGAACATGATTGCAA 58.442 39.130 33.42 0.00 46.12 4.08
517 3374 3.056678 GGTGGTTCATGAACATGATTGCA 60.057 43.478 33.42 20.23 46.12 4.08
518 3375 3.194116 AGGTGGTTCATGAACATGATTGC 59.806 43.478 33.42 18.17 46.12 3.56
519 3376 5.449588 GCTAGGTGGTTCATGAACATGATTG 60.450 44.000 33.42 21.22 46.12 2.67
520 3377 4.641989 GCTAGGTGGTTCATGAACATGATT 59.358 41.667 33.42 19.30 46.12 2.57
521 3378 4.202441 GCTAGGTGGTTCATGAACATGAT 58.798 43.478 33.42 20.85 46.12 2.45
522 3379 3.609853 GCTAGGTGGTTCATGAACATGA 58.390 45.455 33.42 17.76 45.30 3.07
523 3380 2.352651 CGCTAGGTGGTTCATGAACATG 59.647 50.000 33.42 18.95 42.85 3.21
524 3381 2.236146 TCGCTAGGTGGTTCATGAACAT 59.764 45.455 33.42 20.55 42.85 2.71
525 3382 1.621317 TCGCTAGGTGGTTCATGAACA 59.379 47.619 33.42 19.93 42.85 3.18
526 3383 2.000447 GTCGCTAGGTGGTTCATGAAC 59.000 52.381 27.16 27.16 40.45 3.18
527 3384 1.403647 CGTCGCTAGGTGGTTCATGAA 60.404 52.381 3.38 3.38 0.00 2.57
528 3385 0.172578 CGTCGCTAGGTGGTTCATGA 59.827 55.000 0.00 0.00 0.00 3.07
529 3386 0.172578 TCGTCGCTAGGTGGTTCATG 59.827 55.000 0.00 0.00 0.00 3.07
530 3387 0.172803 GTCGTCGCTAGGTGGTTCAT 59.827 55.000 0.00 0.00 0.00 2.57
531 3388 0.892358 AGTCGTCGCTAGGTGGTTCA 60.892 55.000 0.00 0.00 0.00 3.18
532 3389 1.089920 TAGTCGTCGCTAGGTGGTTC 58.910 55.000 0.00 0.00 0.00 3.62
533 3390 0.807496 GTAGTCGTCGCTAGGTGGTT 59.193 55.000 0.00 0.00 0.00 3.67
534 3391 0.321919 TGTAGTCGTCGCTAGGTGGT 60.322 55.000 0.00 0.00 0.00 4.16
535 3392 0.806868 TTGTAGTCGTCGCTAGGTGG 59.193 55.000 0.00 0.00 0.00 4.61
536 3393 2.248487 GTTTGTAGTCGTCGCTAGGTG 58.752 52.381 0.00 0.00 0.00 4.00
537 3394 1.881973 TGTTTGTAGTCGTCGCTAGGT 59.118 47.619 0.00 0.00 0.00 3.08
538 3395 2.095364 AGTGTTTGTAGTCGTCGCTAGG 60.095 50.000 0.00 0.00 0.00 3.02
539 3396 2.909244 CAGTGTTTGTAGTCGTCGCTAG 59.091 50.000 0.00 0.00 0.00 3.42
540 3397 2.549329 TCAGTGTTTGTAGTCGTCGCTA 59.451 45.455 0.00 0.00 0.00 4.26
541 3398 1.335810 TCAGTGTTTGTAGTCGTCGCT 59.664 47.619 0.00 0.00 0.00 4.93
542 3399 1.762419 TCAGTGTTTGTAGTCGTCGC 58.238 50.000 0.00 0.00 0.00 5.19
543 3400 2.153247 GCTTCAGTGTTTGTAGTCGTCG 59.847 50.000 0.00 0.00 0.00 5.12
544 3401 2.153247 CGCTTCAGTGTTTGTAGTCGTC 59.847 50.000 0.00 0.00 0.00 4.20
545 3402 2.124903 CGCTTCAGTGTTTGTAGTCGT 58.875 47.619 0.00 0.00 0.00 4.34
546 3403 2.390938 TCGCTTCAGTGTTTGTAGTCG 58.609 47.619 0.00 0.00 0.00 4.18
547 3404 2.155924 GCTCGCTTCAGTGTTTGTAGTC 59.844 50.000 0.00 0.00 0.00 2.59
548 3405 2.135933 GCTCGCTTCAGTGTTTGTAGT 58.864 47.619 0.00 0.00 0.00 2.73
549 3406 1.461127 GGCTCGCTTCAGTGTTTGTAG 59.539 52.381 0.00 0.00 0.00 2.74
550 3407 1.202592 TGGCTCGCTTCAGTGTTTGTA 60.203 47.619 0.00 0.00 0.00 2.41
551 3408 0.463654 TGGCTCGCTTCAGTGTTTGT 60.464 50.000 0.00 0.00 0.00 2.83
552 3409 0.662619 TTGGCTCGCTTCAGTGTTTG 59.337 50.000 0.00 0.00 0.00 2.93
553 3410 1.334869 CTTTGGCTCGCTTCAGTGTTT 59.665 47.619 0.00 0.00 0.00 2.83
554 3411 0.947244 CTTTGGCTCGCTTCAGTGTT 59.053 50.000 0.00 0.00 0.00 3.32
555 3412 0.886490 CCTTTGGCTCGCTTCAGTGT 60.886 55.000 0.00 0.00 0.00 3.55
556 3413 1.871772 CCTTTGGCTCGCTTCAGTG 59.128 57.895 0.00 0.00 0.00 3.66
557 3414 1.968540 GCCTTTGGCTCGCTTCAGT 60.969 57.895 0.73 0.00 46.69 3.41
558 3415 2.873288 GCCTTTGGCTCGCTTCAG 59.127 61.111 0.73 0.00 46.69 3.02
581 3438 3.740128 ATGGAGGTGCGATGACGGC 62.740 63.158 0.00 0.00 40.15 5.68
582 3439 1.592669 GATGGAGGTGCGATGACGG 60.593 63.158 0.00 0.00 40.15 4.79
583 3440 1.141665 TGATGGAGGTGCGATGACG 59.858 57.895 0.00 0.00 42.93 4.35
584 3441 0.811616 GGTGATGGAGGTGCGATGAC 60.812 60.000 0.00 0.00 0.00 3.06
585 3442 1.522092 GGTGATGGAGGTGCGATGA 59.478 57.895 0.00 0.00 0.00 2.92
586 3443 1.884464 CGGTGATGGAGGTGCGATG 60.884 63.158 0.00 0.00 0.00 3.84
587 3444 1.613317 TTCGGTGATGGAGGTGCGAT 61.613 55.000 0.00 0.00 0.00 4.58
588 3445 2.225791 CTTCGGTGATGGAGGTGCGA 62.226 60.000 0.00 0.00 0.00 5.10
589 3446 1.811266 CTTCGGTGATGGAGGTGCG 60.811 63.158 0.00 0.00 0.00 5.34
590 3447 2.109126 GCTTCGGTGATGGAGGTGC 61.109 63.158 0.00 0.00 0.00 5.01
591 3448 0.742281 CTGCTTCGGTGATGGAGGTG 60.742 60.000 0.00 0.00 0.00 4.00
592 3449 1.599047 CTGCTTCGGTGATGGAGGT 59.401 57.895 0.00 0.00 0.00 3.85
593 3450 1.153289 CCTGCTTCGGTGATGGAGG 60.153 63.158 5.99 5.99 38.48 4.30
594 3451 1.153289 CCCTGCTTCGGTGATGGAG 60.153 63.158 0.00 0.00 0.00 3.86
595 3452 2.989639 CCCTGCTTCGGTGATGGA 59.010 61.111 0.00 0.00 0.00 3.41
596 3453 2.825836 GCCCTGCTTCGGTGATGG 60.826 66.667 0.00 0.00 0.00 3.51
597 3454 1.243342 TTTGCCCTGCTTCGGTGATG 61.243 55.000 0.00 0.00 0.00 3.07
598 3455 1.074775 TTTGCCCTGCTTCGGTGAT 59.925 52.632 0.00 0.00 0.00 3.06
599 3456 1.896660 GTTTGCCCTGCTTCGGTGA 60.897 57.895 0.00 0.00 0.00 4.02
600 3457 2.644992 GTTTGCCCTGCTTCGGTG 59.355 61.111 0.00 0.00 0.00 4.94
601 3458 2.597510 GGTTTGCCCTGCTTCGGT 60.598 61.111 0.00 0.00 0.00 4.69
602 3459 1.903404 AAGGTTTGCCCTGCTTCGG 60.903 57.895 0.00 0.00 45.47 4.30
603 3460 1.286880 CAAGGTTTGCCCTGCTTCG 59.713 57.895 0.00 0.00 45.47 3.79
604 3461 1.541588 CTACAAGGTTTGCCCTGCTTC 59.458 52.381 0.00 0.00 45.47 3.86
605 3462 1.133482 ACTACAAGGTTTGCCCTGCTT 60.133 47.619 0.00 0.00 45.47 3.91
606 3463 0.478507 ACTACAAGGTTTGCCCTGCT 59.521 50.000 0.00 0.00 45.47 4.24
607 3464 2.084546 CTACTACAAGGTTTGCCCTGC 58.915 52.381 0.00 0.00 45.47 4.85
608 3465 2.084546 GCTACTACAAGGTTTGCCCTG 58.915 52.381 0.00 0.00 45.47 4.45
610 3467 2.084546 CTGCTACTACAAGGTTTGCCC 58.915 52.381 0.00 0.00 34.57 5.36
611 3468 2.742589 GACTGCTACTACAAGGTTTGCC 59.257 50.000 0.00 0.00 0.00 4.52
612 3469 3.399330 TGACTGCTACTACAAGGTTTGC 58.601 45.455 0.00 0.00 0.00 3.68
613 3470 4.632153 ACTGACTGCTACTACAAGGTTTG 58.368 43.478 0.00 0.00 0.00 2.93
614 3471 4.558898 CGACTGACTGCTACTACAAGGTTT 60.559 45.833 0.00 0.00 0.00 3.27
615 3472 3.057456 CGACTGACTGCTACTACAAGGTT 60.057 47.826 0.00 0.00 0.00 3.50
616 3473 2.488545 CGACTGACTGCTACTACAAGGT 59.511 50.000 0.00 0.00 0.00 3.50
617 3474 2.159366 CCGACTGACTGCTACTACAAGG 60.159 54.545 0.00 0.00 0.00 3.61
618 3475 2.159366 CCCGACTGACTGCTACTACAAG 60.159 54.545 0.00 0.00 0.00 3.16
619 3476 1.816835 CCCGACTGACTGCTACTACAA 59.183 52.381 0.00 0.00 0.00 2.41
620 3477 1.003928 TCCCGACTGACTGCTACTACA 59.996 52.381 0.00 0.00 0.00 2.74
621 3478 1.747709 TCCCGACTGACTGCTACTAC 58.252 55.000 0.00 0.00 0.00 2.73
622 3479 2.290768 ACTTCCCGACTGACTGCTACTA 60.291 50.000 0.00 0.00 0.00 1.82
623 3480 1.178276 CTTCCCGACTGACTGCTACT 58.822 55.000 0.00 0.00 0.00 2.57
624 3481 0.889306 ACTTCCCGACTGACTGCTAC 59.111 55.000 0.00 0.00 0.00 3.58
625 3482 1.174783 GACTTCCCGACTGACTGCTA 58.825 55.000 0.00 0.00 0.00 3.49
626 3483 1.867919 CGACTTCCCGACTGACTGCT 61.868 60.000 0.00 0.00 0.00 4.24
627 3484 1.444553 CGACTTCCCGACTGACTGC 60.445 63.158 0.00 0.00 0.00 4.40
628 3485 0.109689 GACGACTTCCCGACTGACTG 60.110 60.000 0.00 0.00 0.00 3.51
629 3486 1.575576 CGACGACTTCCCGACTGACT 61.576 60.000 0.00 0.00 0.00 3.41
630 3487 1.154263 CGACGACTTCCCGACTGAC 60.154 63.158 0.00 0.00 0.00 3.51
631 3488 1.598962 ACGACGACTTCCCGACTGA 60.599 57.895 0.00 0.00 0.00 3.41
632 3489 1.442184 CACGACGACTTCCCGACTG 60.442 63.158 0.00 0.00 0.00 3.51
633 3490 2.952245 CACGACGACTTCCCGACT 59.048 61.111 0.00 0.00 0.00 4.18
634 3491 1.915614 TAGCACGACGACTTCCCGAC 61.916 60.000 0.00 0.00 0.00 4.79
635 3492 1.236616 TTAGCACGACGACTTCCCGA 61.237 55.000 0.00 0.00 0.00 5.14
636 3493 0.797249 CTTAGCACGACGACTTCCCG 60.797 60.000 0.00 0.00 0.00 5.14
637 3494 0.458025 CCTTAGCACGACGACTTCCC 60.458 60.000 0.00 0.00 0.00 3.97
638 3495 1.077089 GCCTTAGCACGACGACTTCC 61.077 60.000 0.00 0.00 39.53 3.46
639 3496 1.077089 GGCCTTAGCACGACGACTTC 61.077 60.000 0.00 0.00 42.56 3.01
640 3497 1.080025 GGCCTTAGCACGACGACTT 60.080 57.895 0.00 0.00 42.56 3.01
641 3498 2.572284 GGCCTTAGCACGACGACT 59.428 61.111 0.00 0.59 42.56 4.18
642 3499 2.508663 GGGCCTTAGCACGACGAC 60.509 66.667 0.84 0.00 42.56 4.34
643 3500 3.766691 GGGGCCTTAGCACGACGA 61.767 66.667 0.84 0.00 46.55 4.20
644 3501 4.832608 GGGGGCCTTAGCACGACG 62.833 72.222 0.84 0.00 46.55 5.12
645 3502 2.029307 CTAGGGGGCCTTAGCACGAC 62.029 65.000 0.84 0.00 46.55 4.34
646 3503 1.760875 CTAGGGGGCCTTAGCACGA 60.761 63.158 0.84 0.00 46.55 4.35
647 3504 2.808206 CCTAGGGGGCCTTAGCACG 61.808 68.421 0.84 0.00 46.55 5.34
648 3505 1.384082 TCCTAGGGGGCCTTAGCAC 60.384 63.158 9.46 0.00 43.97 4.40
649 3506 1.384082 GTCCTAGGGGGCCTTAGCA 60.384 63.158 9.46 0.00 42.56 3.49
650 3507 0.190318 TAGTCCTAGGGGGCCTTAGC 59.810 60.000 9.46 0.00 38.13 3.09
651 3508 1.828050 GCTAGTCCTAGGGGGCCTTAG 60.828 61.905 9.46 6.07 38.13 2.18
652 3509 0.190318 GCTAGTCCTAGGGGGCCTTA 59.810 60.000 9.46 0.00 38.13 2.69
653 3510 1.074395 GCTAGTCCTAGGGGGCCTT 60.074 63.158 9.46 0.00 38.13 4.35
654 3511 2.615773 GCTAGTCCTAGGGGGCCT 59.384 66.667 9.46 2.82 38.13 5.19
655 3512 2.918276 CGCTAGTCCTAGGGGGCC 60.918 72.222 9.46 0.00 40.95 5.80
656 3513 3.617735 GCGCTAGTCCTAGGGGGC 61.618 72.222 9.46 8.97 43.69 5.80
657 3514 2.123425 TGCGCTAGTCCTAGGGGG 60.123 66.667 9.73 2.02 43.69 5.40
658 3515 0.178998 TAGTGCGCTAGTCCTAGGGG 60.179 60.000 9.73 0.00 43.69 4.79
659 3516 1.202782 TCTAGTGCGCTAGTCCTAGGG 60.203 57.143 28.70 12.61 43.86 3.53
660 3517 2.147958 CTCTAGTGCGCTAGTCCTAGG 58.852 57.143 28.70 0.82 43.86 3.02
661 3518 2.841215 ACTCTAGTGCGCTAGTCCTAG 58.159 52.381 28.70 21.72 43.86 3.02
662 3519 3.803021 GCTACTCTAGTGCGCTAGTCCTA 60.803 52.174 28.70 16.88 43.86 2.94
663 3520 2.841215 CTACTCTAGTGCGCTAGTCCT 58.159 52.381 28.70 16.69 43.86 3.85
664 3521 1.264826 GCTACTCTAGTGCGCTAGTCC 59.735 57.143 28.70 13.10 43.86 3.85
665 3522 1.941294 TGCTACTCTAGTGCGCTAGTC 59.059 52.381 28.70 16.14 43.86 2.59
666 3523 2.039818 TGCTACTCTAGTGCGCTAGT 57.960 50.000 28.70 18.74 43.86 2.57
667 3524 3.003793 TGATTGCTACTCTAGTGCGCTAG 59.996 47.826 25.38 25.38 44.60 3.42
668 3525 2.949644 TGATTGCTACTCTAGTGCGCTA 59.050 45.455 9.73 6.84 0.00 4.26
669 3526 1.751351 TGATTGCTACTCTAGTGCGCT 59.249 47.619 9.73 4.58 0.00 5.92
670 3527 2.209838 TGATTGCTACTCTAGTGCGC 57.790 50.000 0.00 0.00 0.00 6.09
671 3528 2.976509 CGATGATTGCTACTCTAGTGCG 59.023 50.000 0.00 0.00 0.00 5.34
672 3529 2.728839 GCGATGATTGCTACTCTAGTGC 59.271 50.000 0.00 0.00 0.00 4.40
673 3530 3.243535 TGGCGATGATTGCTACTCTAGTG 60.244 47.826 4.42 0.00 0.00 2.74
674 3531 2.959030 TGGCGATGATTGCTACTCTAGT 59.041 45.455 4.42 0.00 0.00 2.57
675 3532 3.650070 TGGCGATGATTGCTACTCTAG 57.350 47.619 4.42 0.00 0.00 2.43
676 3533 4.039124 TCATTGGCGATGATTGCTACTCTA 59.961 41.667 13.49 0.00 39.83 2.43
677 3534 2.988010 TTGGCGATGATTGCTACTCT 57.012 45.000 4.42 0.00 0.00 3.24
678 3535 3.133691 TCATTGGCGATGATTGCTACTC 58.866 45.455 13.49 0.00 39.83 2.59
679 3536 3.198409 TCATTGGCGATGATTGCTACT 57.802 42.857 13.49 0.00 39.83 2.57
680 3537 3.561310 TCTTCATTGGCGATGATTGCTAC 59.439 43.478 17.90 0.00 44.01 3.58
681 3538 3.807553 TCTTCATTGGCGATGATTGCTA 58.192 40.909 17.90 2.27 44.01 3.49
682 3539 2.646930 TCTTCATTGGCGATGATTGCT 58.353 42.857 17.90 0.00 44.01 3.91
683 3540 3.369385 CTTCTTCATTGGCGATGATTGC 58.631 45.455 17.90 0.00 44.01 3.56
684 3541 3.066342 AGCTTCTTCATTGGCGATGATTG 59.934 43.478 17.90 13.50 44.01 2.67
685 3542 3.285484 AGCTTCTTCATTGGCGATGATT 58.715 40.909 17.90 0.00 44.01 2.57
686 3543 2.877168 GAGCTTCTTCATTGGCGATGAT 59.123 45.455 17.90 2.12 44.01 2.45
687 3544 2.283298 GAGCTTCTTCATTGGCGATGA 58.717 47.619 13.49 13.49 42.95 2.92
688 3545 1.004185 CGAGCTTCTTCATTGGCGATG 60.004 52.381 8.51 8.51 37.08 3.84
689 3546 1.293924 CGAGCTTCTTCATTGGCGAT 58.706 50.000 0.00 0.00 0.00 4.58
690 3547 0.037326 ACGAGCTTCTTCATTGGCGA 60.037 50.000 0.00 0.00 0.00 5.54
691 3548 1.590238 CTACGAGCTTCTTCATTGGCG 59.410 52.381 0.00 0.00 0.00 5.69
692 3549 2.893637 TCTACGAGCTTCTTCATTGGC 58.106 47.619 0.00 0.00 0.00 4.52
693 3550 4.686972 TGATCTACGAGCTTCTTCATTGG 58.313 43.478 0.00 0.00 0.00 3.16
694 3551 5.586339 TCTGATCTACGAGCTTCTTCATTG 58.414 41.667 0.00 0.00 0.00 2.82
695 3552 5.843673 TCTGATCTACGAGCTTCTTCATT 57.156 39.130 0.00 0.00 0.00 2.57
696 3553 5.221224 CCTTCTGATCTACGAGCTTCTTCAT 60.221 44.000 0.00 0.00 0.00 2.57
697 3554 4.097135 CCTTCTGATCTACGAGCTTCTTCA 59.903 45.833 0.00 0.00 0.00 3.02
698 3555 4.499019 CCCTTCTGATCTACGAGCTTCTTC 60.499 50.000 0.00 0.00 0.00 2.87
699 3556 3.383185 CCCTTCTGATCTACGAGCTTCTT 59.617 47.826 0.00 0.00 0.00 2.52
700 3557 2.955660 CCCTTCTGATCTACGAGCTTCT 59.044 50.000 0.00 0.00 0.00 2.85
701 3558 2.691011 ACCCTTCTGATCTACGAGCTTC 59.309 50.000 0.00 0.00 0.00 3.86
702 3559 2.691011 GACCCTTCTGATCTACGAGCTT 59.309 50.000 0.00 0.00 0.00 3.74
703 3560 2.303175 GACCCTTCTGATCTACGAGCT 58.697 52.381 0.00 0.00 0.00 4.09
704 3561 2.025155 TGACCCTTCTGATCTACGAGC 58.975 52.381 0.00 0.00 0.00 5.03
705 3562 4.425520 GTTTGACCCTTCTGATCTACGAG 58.574 47.826 0.00 0.00 0.00 4.18
706 3563 3.194968 GGTTTGACCCTTCTGATCTACGA 59.805 47.826 0.00 0.00 30.04 3.43
707 3564 3.195825 AGGTTTGACCCTTCTGATCTACG 59.804 47.826 0.00 0.00 39.75 3.51
708 3565 4.020128 ACAGGTTTGACCCTTCTGATCTAC 60.020 45.833 0.00 0.00 39.75 2.59
709 3566 4.168101 ACAGGTTTGACCCTTCTGATCTA 58.832 43.478 0.00 0.00 39.75 1.98
710 3567 2.982488 ACAGGTTTGACCCTTCTGATCT 59.018 45.455 0.00 0.00 39.75 2.75
711 3568 3.425162 ACAGGTTTGACCCTTCTGATC 57.575 47.619 0.00 0.00 39.75 2.92
712 3569 4.993705 TTACAGGTTTGACCCTTCTGAT 57.006 40.909 0.00 0.00 39.75 2.90
713 3570 4.080243 TGTTTACAGGTTTGACCCTTCTGA 60.080 41.667 0.00 0.00 39.75 3.27
714 3571 4.036380 GTGTTTACAGGTTTGACCCTTCTG 59.964 45.833 0.00 0.00 39.75 3.02
715 3572 4.204799 GTGTTTACAGGTTTGACCCTTCT 58.795 43.478 0.00 0.00 39.75 2.85
716 3573 3.317149 GGTGTTTACAGGTTTGACCCTTC 59.683 47.826 0.00 0.00 39.75 3.46
717 3574 3.293337 GGTGTTTACAGGTTTGACCCTT 58.707 45.455 0.00 0.00 39.75 3.95
718 3575 2.423803 GGGTGTTTACAGGTTTGACCCT 60.424 50.000 0.00 0.00 39.75 4.34
719 3576 1.958579 GGGTGTTTACAGGTTTGACCC 59.041 52.381 0.00 0.00 39.75 4.46
720 3577 2.657143 TGGGTGTTTACAGGTTTGACC 58.343 47.619 0.00 0.00 38.99 4.02
721 3578 4.082136 TGTTTGGGTGTTTACAGGTTTGAC 60.082 41.667 0.00 0.00 0.00 3.18
722 3579 4.087182 TGTTTGGGTGTTTACAGGTTTGA 58.913 39.130 0.00 0.00 0.00 2.69
723 3580 4.457834 TGTTTGGGTGTTTACAGGTTTG 57.542 40.909 0.00 0.00 0.00 2.93
724 3581 5.246429 TCTTTGTTTGGGTGTTTACAGGTTT 59.754 36.000 0.00 0.00 0.00 3.27
725 3582 4.773149 TCTTTGTTTGGGTGTTTACAGGTT 59.227 37.500 0.00 0.00 0.00 3.50
726 3583 4.158949 GTCTTTGTTTGGGTGTTTACAGGT 59.841 41.667 0.00 0.00 0.00 4.00
727 3584 4.678622 GTCTTTGTTTGGGTGTTTACAGG 58.321 43.478 0.00 0.00 0.00 4.00
728 3585 4.095185 TCGTCTTTGTTTGGGTGTTTACAG 59.905 41.667 0.00 0.00 0.00 2.74
729 3586 4.008330 TCGTCTTTGTTTGGGTGTTTACA 58.992 39.130 0.00 0.00 0.00 2.41
730 3587 4.619437 TCGTCTTTGTTTGGGTGTTTAC 57.381 40.909 0.00 0.00 0.00 2.01
731 3588 4.437121 CGTTCGTCTTTGTTTGGGTGTTTA 60.437 41.667 0.00 0.00 0.00 2.01
732 3589 3.671164 CGTTCGTCTTTGTTTGGGTGTTT 60.671 43.478 0.00 0.00 0.00 2.83
733 3590 2.159490 CGTTCGTCTTTGTTTGGGTGTT 60.159 45.455 0.00 0.00 0.00 3.32
734 3591 1.399089 CGTTCGTCTTTGTTTGGGTGT 59.601 47.619 0.00 0.00 0.00 4.16
735 3592 1.666700 TCGTTCGTCTTTGTTTGGGTG 59.333 47.619 0.00 0.00 0.00 4.61
736 3593 2.027003 TCGTTCGTCTTTGTTTGGGT 57.973 45.000 0.00 0.00 0.00 4.51
737 3594 2.610374 TCTTCGTTCGTCTTTGTTTGGG 59.390 45.455 0.00 0.00 0.00 4.12
738 3595 3.545426 GGTCTTCGTTCGTCTTTGTTTGG 60.545 47.826 0.00 0.00 0.00 3.28
739 3596 3.604392 GGTCTTCGTTCGTCTTTGTTTG 58.396 45.455 0.00 0.00 0.00 2.93
740 3597 2.283351 CGGTCTTCGTTCGTCTTTGTTT 59.717 45.455 0.00 0.00 0.00 2.83
741 3598 1.856597 CGGTCTTCGTTCGTCTTTGTT 59.143 47.619 0.00 0.00 0.00 2.83
742 3599 1.066002 TCGGTCTTCGTTCGTCTTTGT 59.934 47.619 0.00 0.00 40.32 2.83
743 3600 1.762419 TCGGTCTTCGTTCGTCTTTG 58.238 50.000 0.00 0.00 40.32 2.77
744 3601 2.497107 TTCGGTCTTCGTTCGTCTTT 57.503 45.000 0.00 0.00 40.32 2.52
745 3602 2.593257 GATTCGGTCTTCGTTCGTCTT 58.407 47.619 0.00 0.00 40.32 3.01
746 3603 1.135460 GGATTCGGTCTTCGTTCGTCT 60.135 52.381 0.00 0.00 40.32 4.18
747 3604 1.266466 GGATTCGGTCTTCGTTCGTC 58.734 55.000 0.00 0.00 40.32 4.20
748 3605 0.599558 TGGATTCGGTCTTCGTTCGT 59.400 50.000 0.00 0.00 40.32 3.85
749 3606 1.705256 TTGGATTCGGTCTTCGTTCG 58.295 50.000 0.00 0.00 40.32 3.95
750 3607 2.159037 GGTTTGGATTCGGTCTTCGTTC 59.841 50.000 0.00 0.00 40.32 3.95
751 3608 2.148768 GGTTTGGATTCGGTCTTCGTT 58.851 47.619 0.00 0.00 40.32 3.85
752 3609 1.804601 GGTTTGGATTCGGTCTTCGT 58.195 50.000 0.00 0.00 40.32 3.85
753 3610 0.719465 CGGTTTGGATTCGGTCTTCG 59.281 55.000 0.00 0.00 40.90 3.79
754 3611 2.088950 TCGGTTTGGATTCGGTCTTC 57.911 50.000 0.00 0.00 0.00 2.87
755 3612 2.356135 CATCGGTTTGGATTCGGTCTT 58.644 47.619 0.00 0.00 0.00 3.01
756 3613 2.012051 GCATCGGTTTGGATTCGGTCT 61.012 52.381 0.00 0.00 0.00 3.85
757 3614 0.377203 GCATCGGTTTGGATTCGGTC 59.623 55.000 0.00 0.00 0.00 4.79
758 3615 0.322098 TGCATCGGTTTGGATTCGGT 60.322 50.000 0.00 0.00 0.00 4.69
759 3616 0.098728 GTGCATCGGTTTGGATTCGG 59.901 55.000 0.00 0.00 0.00 4.30
760 3617 0.247655 CGTGCATCGGTTTGGATTCG 60.248 55.000 0.00 0.00 35.71 3.34
761 3618 0.802494 ACGTGCATCGGTTTGGATTC 59.198 50.000 12.18 0.00 44.69 2.52
762 3619 0.802494 GACGTGCATCGGTTTGGATT 59.198 50.000 12.18 0.00 44.69 3.01
763 3620 1.024579 GGACGTGCATCGGTTTGGAT 61.025 55.000 0.63 0.00 44.69 3.41
764 3621 1.669760 GGACGTGCATCGGTTTGGA 60.670 57.895 0.63 0.00 44.69 3.53
765 3622 1.911293 CTGGACGTGCATCGGTTTGG 61.911 60.000 11.16 0.00 44.69 3.28
766 3623 0.948623 TCTGGACGTGCATCGGTTTG 60.949 55.000 11.16 0.00 44.69 2.93
767 3624 0.250124 TTCTGGACGTGCATCGGTTT 60.250 50.000 11.16 0.00 44.69 3.27
768 3625 0.250124 TTTCTGGACGTGCATCGGTT 60.250 50.000 11.16 0.00 44.69 4.44
769 3626 0.250124 TTTTCTGGACGTGCATCGGT 60.250 50.000 11.16 1.16 44.69 4.69
770 3627 0.871722 TTTTTCTGGACGTGCATCGG 59.128 50.000 11.16 0.00 44.69 4.18
971 3832 1.539124 GGTGGAGTGGGAGGAGGTT 60.539 63.158 0.00 0.00 0.00 3.50
1016 3891 1.535462 GTGATTTGGTTGTGTCTCCGG 59.465 52.381 0.00 0.00 0.00 5.14
1284 4174 3.771160 GGCGACGGTGACCTGGAT 61.771 66.667 0.00 0.00 0.00 3.41
1517 4407 2.928036 TCTTGACCTGGAGGATGAGA 57.072 50.000 0.00 0.00 38.94 3.27
1607 6080 2.948720 GCTGGTGACGAGGAAGGCT 61.949 63.158 0.00 0.00 0.00 4.58
1748 6221 7.125204 TGGTATACAGTAGTACAAGCCAAGAAT 59.875 37.037 5.01 0.00 31.96 2.40
1758 6231 6.707608 CGGTCACTATGGTATACAGTAGTACA 59.292 42.308 15.10 6.45 31.96 2.90
1759 6232 6.348050 GCGGTCACTATGGTATACAGTAGTAC 60.348 46.154 15.10 13.36 31.96 2.73
1760 6233 5.702670 GCGGTCACTATGGTATACAGTAGTA 59.297 44.000 15.10 5.93 34.10 1.82
1761 6234 4.518211 GCGGTCACTATGGTATACAGTAGT 59.482 45.833 5.01 9.04 0.00 2.73
1762 6235 4.517832 TGCGGTCACTATGGTATACAGTAG 59.482 45.833 5.01 8.43 0.00 2.57
1763 6236 4.463070 TGCGGTCACTATGGTATACAGTA 58.537 43.478 5.01 0.00 0.00 2.74
1764 6237 3.293337 TGCGGTCACTATGGTATACAGT 58.707 45.455 5.01 0.00 0.00 3.55
1765 6238 3.568430 TCTGCGGTCACTATGGTATACAG 59.432 47.826 5.01 0.00 0.00 2.74
2019 6558 3.010250 AGTCCCCATTTGTACTTTCTCCC 59.990 47.826 0.00 0.00 0.00 4.30
2120 6659 7.589958 AACTAACATTTGTGTTCCCAATGTA 57.410 32.000 0.00 0.00 33.59 2.29
2185 6724 3.924238 CCAGCGTATCATTGGCAAC 57.076 52.632 0.00 0.00 0.00 4.17
2242 6781 6.724263 TGCAAAGTCAAAGTACATACAACAG 58.276 36.000 0.00 0.00 0.00 3.16
2252 6791 7.801716 AGTAACTGATTGCAAAGTCAAAGTA 57.198 32.000 1.71 0.00 0.00 2.24
2302 6841 8.965819 TGTAAACCTACATACCGACTGTAATTA 58.034 33.333 0.00 0.00 32.93 1.40
2595 7134 8.995027 TTCTGAAGGCACATATACCATTTTAT 57.005 30.769 0.00 0.00 0.00 1.40
2706 7245 4.808414 TCGAATCCATCTTTCTCTGTGT 57.192 40.909 0.00 0.00 0.00 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.