Multiple sequence alignment - TraesCS5D01G131500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G131500 chr5D 100.000 4642 0 0 1 4642 209300235 209304876 0.000000e+00 8573.0
1 TraesCS5D01G131500 chr5D 86.899 603 79 0 3062 3664 556140822 556140220 0.000000e+00 676.0
2 TraesCS5D01G131500 chr5D 86.624 471 52 8 2450 2917 556141519 556141057 1.150000e-140 510.0
3 TraesCS5D01G131500 chr5D 84.483 116 16 2 993 1107 556141766 556141652 3.800000e-21 113.0
4 TraesCS5D01G131500 chr5B 95.983 1693 55 7 2338 4020 222355237 222356926 0.000000e+00 2737.0
5 TraesCS5D01G131500 chr5B 94.206 1726 74 12 355 2065 222353525 222355239 0.000000e+00 2610.0
6 TraesCS5D01G131500 chr5B 87.285 582 72 2 3064 3644 694693557 694694137 0.000000e+00 664.0
7 TraesCS5D01G131500 chr5B 82.727 660 91 17 3144 3787 694315233 694314581 2.420000e-157 566.0
8 TraesCS5D01G131500 chr5B 85.391 486 66 3 2432 2917 694692838 694693318 2.490000e-137 499.0
9 TraesCS5D01G131500 chr5B 91.139 237 17 4 4189 4422 222361003 222361238 7.500000e-83 318.0
10 TraesCS5D01G131500 chr5B 93.659 205 7 3 4440 4642 222361400 222361600 7.550000e-78 302.0
11 TraesCS5D01G131500 chr5B 82.759 116 18 2 993 1107 694692609 694692723 8.220000e-18 102.0
12 TraesCS5D01G131500 chr5B 96.364 55 2 0 1 55 222352975 222353029 1.780000e-14 91.6
13 TraesCS5D01G131500 chr5B 93.443 61 4 0 4126 4186 222357033 222357093 1.780000e-14 91.6
14 TraesCS5D01G131500 chr5B 70.462 325 92 4 3127 3449 416418762 416419084 1.080000e-06 65.8
15 TraesCS5D01G131500 chr5A 94.993 1498 56 4 575 2065 270152721 270154206 0.000000e+00 2333.0
16 TraesCS5D01G131500 chr5A 92.498 1093 38 10 2972 4020 270154917 270156009 0.000000e+00 1524.0
17 TraesCS5D01G131500 chr5A 94.984 638 27 4 2338 2975 270154204 270154836 0.000000e+00 996.0
18 TraesCS5D01G131500 chr5A 96.194 578 18 2 1 578 270151893 270152466 0.000000e+00 942.0
19 TraesCS5D01G131500 chr5A 90.405 469 23 7 4188 4642 270172390 270172850 8.600000e-167 597.0
20 TraesCS5D01G131500 chr5A 96.000 150 5 1 4046 4195 270156158 270156306 4.640000e-60 243.0
21 TraesCS5D01G131500 chr4A 84.564 745 93 15 3062 3787 613582064 613581323 0.000000e+00 719.0
22 TraesCS5D01G131500 chr4A 85.487 503 60 10 2419 2917 613582723 613582230 3.200000e-141 512.0
23 TraesCS5D01G131500 chr1D 93.455 275 17 1 2065 2338 103708814 103708540 1.550000e-109 407.0
24 TraesCS5D01G131500 chr1D 92.580 283 16 4 2063 2340 137147886 137147604 7.230000e-108 401.0
25 TraesCS5D01G131500 chr1D 92.364 275 20 1 2065 2338 43283305 43283031 1.570000e-104 390.0
26 TraesCS5D01G131500 chr2D 92.606 284 17 2 2063 2342 490807576 490807859 5.590000e-109 405.0
27 TraesCS5D01G131500 chr2D 93.091 275 18 1 2066 2339 273933650 273933376 7.230000e-108 401.0
28 TraesCS5D01G131500 chr2D 91.259 286 21 2 2061 2342 36376522 36376807 2.030000e-103 387.0
29 TraesCS5D01G131500 chr4D 92.832 279 19 1 2063 2340 301644925 301644647 2.010000e-108 403.0
30 TraesCS5D01G131500 chr3A 92.832 279 19 1 2063 2340 124521724 124522002 2.010000e-108 403.0
31 TraesCS5D01G131500 chr3D 92.391 276 20 1 2066 2340 599298350 599298625 4.350000e-105 392.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G131500 chr5D 209300235 209304876 4641 False 8573.000000 8573 100.000000 1 4642 1 chr5D.!!$F1 4641
1 TraesCS5D01G131500 chr5D 556140220 556141766 1546 True 433.000000 676 86.002000 993 3664 3 chr5D.!!$R1 2671
2 TraesCS5D01G131500 chr5B 222352975 222361600 8625 False 1025.033333 2737 94.132333 1 4642 6 chr5B.!!$F2 4641
3 TraesCS5D01G131500 chr5B 694314581 694315233 652 True 566.000000 566 82.727000 3144 3787 1 chr5B.!!$R1 643
4 TraesCS5D01G131500 chr5B 694692609 694694137 1528 False 421.666667 664 85.145000 993 3644 3 chr5B.!!$F3 2651
5 TraesCS5D01G131500 chr5A 270151893 270156306 4413 False 1207.600000 2333 94.933800 1 4195 5 chr5A.!!$F2 4194
6 TraesCS5D01G131500 chr4A 613581323 613582723 1400 True 615.500000 719 85.025500 2419 3787 2 chr4A.!!$R1 1368

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
686 1145 0.326927 TTTTTCCCCCACGCTAGAGG 59.673 55.0 0.0 0.0 0.0 3.69 F
687 1146 0.545787 TTTTCCCCCACGCTAGAGGA 60.546 55.0 0.0 0.0 0.0 3.71 F
688 1147 0.976073 TTTCCCCCACGCTAGAGGAG 60.976 60.0 0.0 0.0 0.0 3.69 F
2338 2811 0.253160 TCCCCACTATGACCAGCCTT 60.253 55.0 0.0 0.0 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1705 2178 0.173708 GACTACAGAACCGAGCAGGG 59.826 60.0 3.26 0.0 46.96 4.45 R
2319 2792 0.253160 AAGGCTGGTCATAGTGGGGA 60.253 55.0 0.00 0.0 0.00 4.81 R
2444 2948 1.444933 TCTGAGGTGGGAATGGTTGT 58.555 50.0 0.00 0.0 0.00 3.32 R
4289 9081 0.685660 TGGCTGCATTTGATTTGGCA 59.314 45.0 0.50 0.0 34.66 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 81 0.393808 ACGTCCAACTGTGCAAAGGT 60.394 50.000 9.18 0.00 0.00 3.50
67 82 0.738389 CGTCCAACTGTGCAAAGGTT 59.262 50.000 9.18 1.61 0.00 3.50
68 83 1.533756 CGTCCAACTGTGCAAAGGTTG 60.534 52.381 9.18 13.53 39.70 3.77
118 155 0.687354 CTAGGCTGGGTCGGCAATAT 59.313 55.000 0.00 0.00 37.51 1.28
126 163 4.941263 GCTGGGTCGGCAATATATTGAATA 59.059 41.667 26.22 9.25 40.14 1.75
394 591 7.880195 ACAATGACTTATGGCTGGTTAGATATC 59.120 37.037 0.00 0.00 0.00 1.63
446 643 6.586344 TGAATTCGGAAAAGCATAGAGAGAT 58.414 36.000 0.04 0.00 0.00 2.75
470 667 9.260002 GATGCTCCAAACAAGAAAATTTAGAAA 57.740 29.630 0.00 0.00 0.00 2.52
567 765 0.807496 GCAGTCTGCAGGATTTGGAC 59.193 55.000 20.16 2.60 44.26 4.02
576 1035 4.072131 TGCAGGATTTGGACACTTCTTAC 58.928 43.478 0.00 0.00 0.00 2.34
577 1036 4.202461 TGCAGGATTTGGACACTTCTTACT 60.202 41.667 0.00 0.00 0.00 2.24
578 1037 5.012664 TGCAGGATTTGGACACTTCTTACTA 59.987 40.000 0.00 0.00 0.00 1.82
598 1057 8.786710 TTACTATTTATTCCTGCACCTACCTA 57.213 34.615 0.00 0.00 0.00 3.08
600 1059 8.276453 ACTATTTATTCCTGCACCTACCTATT 57.724 34.615 0.00 0.00 0.00 1.73
648 1107 7.771183 TCTTTGTGTTTCAAGAGCTTGTATTT 58.229 30.769 9.79 0.00 41.16 1.40
649 1108 7.701924 TCTTTGTGTTTCAAGAGCTTGTATTTG 59.298 33.333 9.79 0.00 41.16 2.32
664 1123 6.573094 GCTTGTATTTGAATTTCTGAAGGGCT 60.573 38.462 0.00 0.00 0.00 5.19
666 1125 6.690530 TGTATTTGAATTTCTGAAGGGCTTG 58.309 36.000 0.00 0.00 0.00 4.01
686 1145 0.326927 TTTTTCCCCCACGCTAGAGG 59.673 55.000 0.00 0.00 0.00 3.69
687 1146 0.545787 TTTTCCCCCACGCTAGAGGA 60.546 55.000 0.00 0.00 0.00 3.71
688 1147 0.976073 TTTCCCCCACGCTAGAGGAG 60.976 60.000 0.00 0.00 0.00 3.69
875 1341 4.135747 AGTCCGACTACTAGTACTCCAC 57.864 50.000 0.00 0.00 0.00 4.02
877 1343 4.119136 GTCCGACTACTAGTACTCCACTC 58.881 52.174 0.00 0.00 38.80 3.51
991 1457 4.522789 GGTGTTGGTGGATTGATAAGTTGT 59.477 41.667 0.00 0.00 0.00 3.32
1134 1600 6.434965 TCTTCCTCTTCATCATGCAAAAATCA 59.565 34.615 0.00 0.00 0.00 2.57
1199 1665 2.280797 GTGCTTGTGTCGGCTCCA 60.281 61.111 0.00 0.00 0.00 3.86
1217 1683 2.022195 CCATGATCTTGGTTGAGCTGG 58.978 52.381 17.56 0.00 31.74 4.85
1237 1703 3.749088 TGGTATTTTGCTACTTGGACACG 59.251 43.478 0.00 0.00 0.00 4.49
1250 1716 1.587613 GACACGAGAGATGGCGAGC 60.588 63.158 0.00 0.00 0.00 5.03
1472 1938 5.654603 TCACTCTACGCCTTATTTCAAGA 57.345 39.130 0.00 0.00 0.00 3.02
1640 2106 3.861886 GCATGCAACTTTTGTGTATGCCT 60.862 43.478 14.21 0.00 40.15 4.75
1805 2278 3.454371 AGTGAAGTTACGTGCTTGAGT 57.546 42.857 11.12 4.30 0.00 3.41
1890 2363 9.232082 GTATCTGAGTAGCATCGATGATTTATC 57.768 37.037 29.20 19.48 0.00 1.75
1919 2392 6.775629 TGGAAATTAGCACTTAGTTTTGGACT 59.224 34.615 0.00 0.00 42.55 3.85
1966 2439 8.092068 TCTGAATGTTTCTTGAATTTGCATGAT 58.908 29.630 0.00 0.00 0.00 2.45
1974 2447 7.692460 TCTTGAATTTGCATGATCTAGTGTT 57.308 32.000 0.00 0.00 0.00 3.32
1985 2458 6.038603 GCATGATCTAGTGTTAATTTGCTGGA 59.961 38.462 0.00 0.00 0.00 3.86
2077 2550 8.591114 TTTAGTTCTGTTAGGCTAGTCATAGT 57.409 34.615 0.00 0.00 0.00 2.12
2078 2551 6.458232 AGTTCTGTTAGGCTAGTCATAGTG 57.542 41.667 0.00 0.00 0.00 2.74
2079 2552 5.361285 AGTTCTGTTAGGCTAGTCATAGTGG 59.639 44.000 0.00 0.00 0.00 4.00
2080 2553 4.215908 TCTGTTAGGCTAGTCATAGTGGG 58.784 47.826 0.00 0.00 0.00 4.61
2081 2554 4.079385 TCTGTTAGGCTAGTCATAGTGGGA 60.079 45.833 0.00 0.00 0.00 4.37
2082 2555 4.215908 TGTTAGGCTAGTCATAGTGGGAG 58.784 47.826 0.00 0.00 0.00 4.30
2083 2556 4.216708 GTTAGGCTAGTCATAGTGGGAGT 58.783 47.826 0.00 0.00 0.00 3.85
2084 2557 5.103813 TGTTAGGCTAGTCATAGTGGGAGTA 60.104 44.000 0.00 0.00 0.00 2.59
2085 2558 4.537945 AGGCTAGTCATAGTGGGAGTAA 57.462 45.455 0.00 0.00 0.00 2.24
2086 2559 4.216708 AGGCTAGTCATAGTGGGAGTAAC 58.783 47.826 0.00 0.00 0.00 2.50
2087 2560 4.079096 AGGCTAGTCATAGTGGGAGTAACT 60.079 45.833 0.00 0.00 0.00 2.24
2088 2561 4.650131 GGCTAGTCATAGTGGGAGTAACTT 59.350 45.833 0.00 0.00 0.00 2.66
2089 2562 5.832060 GGCTAGTCATAGTGGGAGTAACTTA 59.168 44.000 0.00 0.00 0.00 2.24
2090 2563 6.016108 GGCTAGTCATAGTGGGAGTAACTTAG 60.016 46.154 0.00 0.00 0.00 2.18
2091 2564 5.855740 AGTCATAGTGGGAGTAACTTAGC 57.144 43.478 0.00 0.00 0.00 3.09
2092 2565 5.269991 AGTCATAGTGGGAGTAACTTAGCA 58.730 41.667 0.00 0.00 0.00 3.49
2093 2566 5.720041 AGTCATAGTGGGAGTAACTTAGCAA 59.280 40.000 0.00 0.00 0.00 3.91
2094 2567 6.043411 GTCATAGTGGGAGTAACTTAGCAAG 58.957 44.000 0.00 0.00 0.00 4.01
2095 2568 5.720041 TCATAGTGGGAGTAACTTAGCAAGT 59.280 40.000 0.00 0.00 45.46 3.16
2096 2569 6.893554 TCATAGTGGGAGTAACTTAGCAAGTA 59.106 38.462 2.60 0.00 41.91 2.24
2097 2570 7.398047 TCATAGTGGGAGTAACTTAGCAAGTAA 59.602 37.037 2.60 0.00 41.91 2.24
2098 2571 5.791666 AGTGGGAGTAACTTAGCAAGTAAC 58.208 41.667 2.60 0.00 41.91 2.50
2099 2572 5.306160 AGTGGGAGTAACTTAGCAAGTAACA 59.694 40.000 2.60 0.00 41.91 2.41
2100 2573 6.013639 AGTGGGAGTAACTTAGCAAGTAACAT 60.014 38.462 2.60 0.00 41.91 2.71
2101 2574 7.179694 AGTGGGAGTAACTTAGCAAGTAACATA 59.820 37.037 2.60 0.00 41.91 2.29
2102 2575 7.491696 GTGGGAGTAACTTAGCAAGTAACATAG 59.508 40.741 2.60 0.00 41.91 2.23
2103 2576 6.479331 GGGAGTAACTTAGCAAGTAACATAGC 59.521 42.308 2.60 0.00 41.91 2.97
2104 2577 6.198591 GGAGTAACTTAGCAAGTAACATAGCG 59.801 42.308 2.60 0.00 41.91 4.26
2105 2578 4.859629 AACTTAGCAAGTAACATAGCGC 57.140 40.909 0.00 0.00 41.91 5.92
2106 2579 3.857052 ACTTAGCAAGTAACATAGCGCA 58.143 40.909 11.47 0.00 40.69 6.09
2107 2580 3.865745 ACTTAGCAAGTAACATAGCGCAG 59.134 43.478 11.47 0.64 40.69 5.18
2108 2581 2.386661 AGCAAGTAACATAGCGCAGT 57.613 45.000 11.47 1.42 0.00 4.40
2109 2582 2.271800 AGCAAGTAACATAGCGCAGTC 58.728 47.619 11.47 0.00 0.00 3.51
2110 2583 1.327764 GCAAGTAACATAGCGCAGTCC 59.672 52.381 11.47 0.00 0.00 3.85
2111 2584 2.616960 CAAGTAACATAGCGCAGTCCA 58.383 47.619 11.47 0.00 0.00 4.02
2112 2585 3.000041 CAAGTAACATAGCGCAGTCCAA 59.000 45.455 11.47 0.00 0.00 3.53
2113 2586 3.543680 AGTAACATAGCGCAGTCCAAT 57.456 42.857 11.47 0.00 0.00 3.16
2114 2587 4.665833 AGTAACATAGCGCAGTCCAATA 57.334 40.909 11.47 0.00 0.00 1.90
2115 2588 4.369182 AGTAACATAGCGCAGTCCAATAC 58.631 43.478 11.47 4.81 0.00 1.89
2116 2589 2.979814 ACATAGCGCAGTCCAATACA 57.020 45.000 11.47 0.00 0.00 2.29
2117 2590 3.260475 ACATAGCGCAGTCCAATACAA 57.740 42.857 11.47 0.00 0.00 2.41
2118 2591 3.605634 ACATAGCGCAGTCCAATACAAA 58.394 40.909 11.47 0.00 0.00 2.83
2119 2592 4.199310 ACATAGCGCAGTCCAATACAAAT 58.801 39.130 11.47 0.00 0.00 2.32
2120 2593 4.640201 ACATAGCGCAGTCCAATACAAATT 59.360 37.500 11.47 0.00 0.00 1.82
2121 2594 5.125417 ACATAGCGCAGTCCAATACAAATTT 59.875 36.000 11.47 0.00 0.00 1.82
2122 2595 3.836949 AGCGCAGTCCAATACAAATTTG 58.163 40.909 16.67 16.67 0.00 2.32
2123 2596 2.345341 GCGCAGTCCAATACAAATTTGC 59.655 45.455 18.12 0.00 0.00 3.68
2124 2597 3.836949 CGCAGTCCAATACAAATTTGCT 58.163 40.909 18.12 8.10 0.00 3.91
2125 2598 4.236935 CGCAGTCCAATACAAATTTGCTT 58.763 39.130 18.12 9.17 0.00 3.91
2126 2599 5.398169 CGCAGTCCAATACAAATTTGCTTA 58.602 37.500 18.12 4.60 0.00 3.09
2127 2600 6.035843 CGCAGTCCAATACAAATTTGCTTAT 58.964 36.000 18.12 6.78 0.00 1.73
2128 2601 6.020440 CGCAGTCCAATACAAATTTGCTTATG 60.020 38.462 18.12 11.46 0.00 1.90
2129 2602 6.813152 GCAGTCCAATACAAATTTGCTTATGT 59.187 34.615 18.12 0.61 0.00 2.29
2130 2603 7.201461 GCAGTCCAATACAAATTTGCTTATGTG 60.201 37.037 18.12 7.76 0.00 3.21
2131 2604 7.276218 CAGTCCAATACAAATTTGCTTATGTGG 59.724 37.037 18.12 15.33 0.00 4.17
2132 2605 6.035975 GTCCAATACAAATTTGCTTATGTGGC 59.964 38.462 18.12 9.27 0.00 5.01
2133 2606 5.873712 CCAATACAAATTTGCTTATGTGGCA 59.126 36.000 18.12 0.00 37.97 4.92
2134 2607 6.539464 CCAATACAAATTTGCTTATGTGGCAT 59.461 34.615 18.12 0.00 39.54 4.40
2135 2608 7.403421 CAATACAAATTTGCTTATGTGGCATG 58.597 34.615 18.12 1.00 39.54 4.06
2136 2609 4.897140 ACAAATTTGCTTATGTGGCATGT 58.103 34.783 18.12 0.00 39.54 3.21
2137 2610 6.035368 ACAAATTTGCTTATGTGGCATGTA 57.965 33.333 18.12 0.00 39.54 2.29
2138 2611 6.642430 ACAAATTTGCTTATGTGGCATGTAT 58.358 32.000 18.12 0.00 39.54 2.29
2139 2612 7.104939 ACAAATTTGCTTATGTGGCATGTATT 58.895 30.769 18.12 0.00 39.54 1.89
2140 2613 7.607223 ACAAATTTGCTTATGTGGCATGTATTT 59.393 29.630 18.12 0.00 39.54 1.40
2141 2614 9.096160 CAAATTTGCTTATGTGGCATGTATTTA 57.904 29.630 5.01 0.00 39.54 1.40
2142 2615 9.664332 AAATTTGCTTATGTGGCATGTATTTAA 57.336 25.926 0.00 0.00 39.54 1.52
2143 2616 9.835389 AATTTGCTTATGTGGCATGTATTTAAT 57.165 25.926 0.00 0.00 39.54 1.40
2147 2620 9.964303 TGCTTATGTGGCATGTATTTAATAAAG 57.036 29.630 0.00 0.00 34.56 1.85
2152 2625 9.851686 ATGTGGCATGTATTTAATAAAGAGAGA 57.148 29.630 0.00 0.00 0.00 3.10
2153 2626 9.851686 TGTGGCATGTATTTAATAAAGAGAGAT 57.148 29.630 0.00 0.00 0.00 2.75
2155 2628 9.851686 TGGCATGTATTTAATAAAGAGAGATGT 57.148 29.630 0.00 0.00 0.00 3.06
2195 2668 5.068234 TGTTACTGTAACATAGCGCTTCT 57.932 39.130 25.14 0.00 43.23 2.85
2196 2669 5.100259 TGTTACTGTAACATAGCGCTTCTC 58.900 41.667 25.14 1.35 43.23 2.87
2197 2670 3.868757 ACTGTAACATAGCGCTTCTCA 57.131 42.857 18.68 0.00 0.00 3.27
2198 2671 4.188247 ACTGTAACATAGCGCTTCTCAA 57.812 40.909 18.68 0.00 0.00 3.02
2199 2672 4.177026 ACTGTAACATAGCGCTTCTCAAG 58.823 43.478 18.68 7.94 0.00 3.02
2200 2673 4.082190 ACTGTAACATAGCGCTTCTCAAGA 60.082 41.667 18.68 0.00 0.00 3.02
2201 2674 4.424626 TGTAACATAGCGCTTCTCAAGAG 58.575 43.478 18.68 0.00 0.00 2.85
2202 2675 3.876274 AACATAGCGCTTCTCAAGAGA 57.124 42.857 18.68 0.00 35.27 3.10
2203 2676 3.876274 ACATAGCGCTTCTCAAGAGAA 57.124 42.857 18.68 11.66 44.47 2.87
2216 2689 7.767250 TTCTCAAGAGAAGATGAGTCTACAA 57.233 36.000 8.37 0.00 42.06 2.41
2217 2690 7.389803 TCTCAAGAGAAGATGAGTCTACAAG 57.610 40.000 0.00 0.00 42.86 3.16
2218 2691 5.960113 TCAAGAGAAGATGAGTCTACAAGC 58.040 41.667 0.00 0.00 33.30 4.01
2219 2692 5.714333 TCAAGAGAAGATGAGTCTACAAGCT 59.286 40.000 0.00 0.00 33.30 3.74
2220 2693 6.887002 TCAAGAGAAGATGAGTCTACAAGCTA 59.113 38.462 0.00 0.00 33.30 3.32
2221 2694 7.394641 TCAAGAGAAGATGAGTCTACAAGCTAA 59.605 37.037 0.00 0.00 33.30 3.09
2222 2695 7.896383 AGAGAAGATGAGTCTACAAGCTAAT 57.104 36.000 0.00 0.00 33.30 1.73
2223 2696 8.988546 AGAGAAGATGAGTCTACAAGCTAATA 57.011 34.615 0.00 0.00 33.30 0.98
2224 2697 9.415008 AGAGAAGATGAGTCTACAAGCTAATAA 57.585 33.333 0.00 0.00 33.30 1.40
2232 2705 9.162764 TGAGTCTACAAGCTAATAAATGAAACC 57.837 33.333 0.00 0.00 0.00 3.27
2233 2706 9.162764 GAGTCTACAAGCTAATAAATGAAACCA 57.837 33.333 0.00 0.00 0.00 3.67
2234 2707 9.686683 AGTCTACAAGCTAATAAATGAAACCAT 57.313 29.630 0.00 0.00 0.00 3.55
2235 2708 9.937175 GTCTACAAGCTAATAAATGAAACCATC 57.063 33.333 0.00 0.00 0.00 3.51
2236 2709 9.905713 TCTACAAGCTAATAAATGAAACCATCT 57.094 29.630 0.00 0.00 0.00 2.90
2242 2715 9.851686 AGCTAATAAATGAAACCATCTATGACA 57.148 29.630 0.00 0.00 0.00 3.58
2243 2716 9.884465 GCTAATAAATGAAACCATCTATGACAC 57.116 33.333 0.00 0.00 0.00 3.67
2249 2722 9.601217 AAATGAAACCATCTATGACACTACTAC 57.399 33.333 0.00 0.00 0.00 2.73
2250 2723 7.956328 TGAAACCATCTATGACACTACTACT 57.044 36.000 0.00 0.00 0.00 2.57
2251 2724 9.642343 ATGAAACCATCTATGACACTACTACTA 57.358 33.333 0.00 0.00 0.00 1.82
2252 2725 9.642343 TGAAACCATCTATGACACTACTACTAT 57.358 33.333 0.00 0.00 0.00 2.12
2253 2726 9.900710 GAAACCATCTATGACACTACTACTATG 57.099 37.037 0.00 0.00 0.00 2.23
2254 2727 8.998277 AACCATCTATGACACTACTACTATGT 57.002 34.615 0.00 0.00 0.00 2.29
2255 2728 8.998277 ACCATCTATGACACTACTACTATGTT 57.002 34.615 0.00 0.00 0.00 2.71
2262 2735 8.928270 ATGACACTACTACTATGTTACTTTGC 57.072 34.615 0.00 0.00 0.00 3.68
2263 2736 7.888424 TGACACTACTACTATGTTACTTTGCA 58.112 34.615 0.00 0.00 0.00 4.08
2264 2737 7.811236 TGACACTACTACTATGTTACTTTGCAC 59.189 37.037 0.00 0.00 0.00 4.57
2265 2738 7.893658 ACACTACTACTATGTTACTTTGCACT 58.106 34.615 0.00 0.00 0.00 4.40
2266 2739 9.017509 ACACTACTACTATGTTACTTTGCACTA 57.982 33.333 0.00 0.00 0.00 2.74
2269 2742 9.464714 CTACTACTATGTTACTTTGCACTATGG 57.535 37.037 0.00 0.00 0.00 2.74
2270 2743 8.074613 ACTACTATGTTACTTTGCACTATGGA 57.925 34.615 0.00 0.00 0.00 3.41
2271 2744 8.198109 ACTACTATGTTACTTTGCACTATGGAG 58.802 37.037 0.00 0.00 0.00 3.86
2272 2745 7.182817 ACTATGTTACTTTGCACTATGGAGA 57.817 36.000 0.00 0.00 0.00 3.71
2273 2746 7.796054 ACTATGTTACTTTGCACTATGGAGAT 58.204 34.615 0.00 0.00 0.00 2.75
2274 2747 6.932356 ATGTTACTTTGCACTATGGAGATG 57.068 37.500 0.00 0.00 0.00 2.90
2275 2748 5.185454 TGTTACTTTGCACTATGGAGATGG 58.815 41.667 0.00 0.00 0.00 3.51
2276 2749 5.186198 GTTACTTTGCACTATGGAGATGGT 58.814 41.667 0.00 0.00 0.00 3.55
2277 2750 6.070481 TGTTACTTTGCACTATGGAGATGGTA 60.070 38.462 0.00 0.00 0.00 3.25
2278 2751 5.435686 ACTTTGCACTATGGAGATGGTAA 57.564 39.130 0.00 0.00 0.00 2.85
2279 2752 5.186198 ACTTTGCACTATGGAGATGGTAAC 58.814 41.667 0.00 0.00 0.00 2.50
2280 2753 5.045578 ACTTTGCACTATGGAGATGGTAACT 60.046 40.000 0.00 0.00 37.61 2.24
2281 2754 5.435686 TTGCACTATGGAGATGGTAACTT 57.564 39.130 0.00 0.00 37.61 2.66
2282 2755 6.553953 TTGCACTATGGAGATGGTAACTTA 57.446 37.500 0.00 0.00 37.61 2.24
2283 2756 6.161855 TGCACTATGGAGATGGTAACTTAG 57.838 41.667 0.00 0.00 37.61 2.18
2284 2757 5.897250 TGCACTATGGAGATGGTAACTTAGA 59.103 40.000 0.00 0.00 37.61 2.10
2285 2758 6.183360 TGCACTATGGAGATGGTAACTTAGAC 60.183 42.308 0.00 0.00 37.61 2.59
2286 2759 6.041069 GCACTATGGAGATGGTAACTTAGACT 59.959 42.308 0.00 0.00 37.61 3.24
2287 2760 7.230913 GCACTATGGAGATGGTAACTTAGACTA 59.769 40.741 0.00 0.00 37.61 2.59
2288 2761 8.788806 CACTATGGAGATGGTAACTTAGACTAG 58.211 40.741 0.00 0.00 37.61 2.57
2289 2762 8.504409 ACTATGGAGATGGTAACTTAGACTAGT 58.496 37.037 0.00 0.00 37.61 2.57
2290 2763 7.589958 ATGGAGATGGTAACTTAGACTAGTG 57.410 40.000 0.00 0.00 37.61 2.74
2291 2764 6.491383 TGGAGATGGTAACTTAGACTAGTGT 58.509 40.000 0.00 0.00 37.61 3.55
2292 2765 6.602406 TGGAGATGGTAACTTAGACTAGTGTC 59.398 42.308 0.00 0.00 39.73 3.67
2293 2766 6.602406 GGAGATGGTAACTTAGACTAGTGTCA 59.398 42.308 0.00 0.00 41.11 3.58
2294 2767 7.285858 GGAGATGGTAACTTAGACTAGTGTCAT 59.714 40.741 0.00 0.00 41.11 3.06
2295 2768 9.339850 GAGATGGTAACTTAGACTAGTGTCATA 57.660 37.037 0.00 0.00 41.11 2.15
2296 2769 9.869667 AGATGGTAACTTAGACTAGTGTCATAT 57.130 33.333 0.00 0.00 41.11 1.78
2297 2770 9.900710 GATGGTAACTTAGACTAGTGTCATATG 57.099 37.037 0.00 0.00 41.11 1.78
2298 2771 7.713750 TGGTAACTTAGACTAGTGTCATATGC 58.286 38.462 0.00 0.00 41.11 3.14
2299 2772 7.340999 TGGTAACTTAGACTAGTGTCATATGCA 59.659 37.037 0.00 0.00 41.11 3.96
2300 2773 8.361139 GGTAACTTAGACTAGTGTCATATGCAT 58.639 37.037 3.79 3.79 45.20 3.96
2301 2774 9.186323 GTAACTTAGACTAGTGTCATATGCATG 57.814 37.037 10.16 0.00 45.20 4.06
2302 2775 7.588497 ACTTAGACTAGTGTCATATGCATGA 57.412 36.000 10.16 0.00 45.20 3.07
2321 2794 7.713750 TGCATGACAGTAGTATAAGTTACTCC 58.286 38.462 0.00 0.00 0.00 3.85
2322 2795 7.146648 GCATGACAGTAGTATAAGTTACTCCC 58.853 42.308 0.00 0.00 0.00 4.30
2323 2796 7.659186 CATGACAGTAGTATAAGTTACTCCCC 58.341 42.308 0.00 0.00 0.00 4.81
2324 2797 6.734532 TGACAGTAGTATAAGTTACTCCCCA 58.265 40.000 0.00 0.00 0.00 4.96
2325 2798 6.604795 TGACAGTAGTATAAGTTACTCCCCAC 59.395 42.308 0.00 0.00 0.00 4.61
2326 2799 6.739664 ACAGTAGTATAAGTTACTCCCCACT 58.260 40.000 0.00 0.00 0.00 4.00
2327 2800 7.876371 ACAGTAGTATAAGTTACTCCCCACTA 58.124 38.462 0.00 0.00 0.00 2.74
2328 2801 8.509441 ACAGTAGTATAAGTTACTCCCCACTAT 58.491 37.037 0.00 0.00 0.00 2.12
2329 2802 8.794553 CAGTAGTATAAGTTACTCCCCACTATG 58.205 40.741 0.00 0.00 0.00 2.23
2330 2803 8.730948 AGTAGTATAAGTTACTCCCCACTATGA 58.269 37.037 0.00 0.00 0.00 2.15
2331 2804 7.836479 AGTATAAGTTACTCCCCACTATGAC 57.164 40.000 0.00 0.00 0.00 3.06
2332 2805 6.781507 AGTATAAGTTACTCCCCACTATGACC 59.218 42.308 0.00 0.00 0.00 4.02
2333 2806 3.484953 AGTTACTCCCCACTATGACCA 57.515 47.619 0.00 0.00 0.00 4.02
2334 2807 3.375699 AGTTACTCCCCACTATGACCAG 58.624 50.000 0.00 0.00 0.00 4.00
2335 2808 1.789523 TACTCCCCACTATGACCAGC 58.210 55.000 0.00 0.00 0.00 4.85
2336 2809 0.983378 ACTCCCCACTATGACCAGCC 60.983 60.000 0.00 0.00 0.00 4.85
2337 2810 0.692419 CTCCCCACTATGACCAGCCT 60.692 60.000 0.00 0.00 0.00 4.58
2338 2811 0.253160 TCCCCACTATGACCAGCCTT 60.253 55.000 0.00 0.00 0.00 4.35
2339 2812 1.009060 TCCCCACTATGACCAGCCTTA 59.991 52.381 0.00 0.00 0.00 2.69
2340 2813 2.057922 CCCCACTATGACCAGCCTTAT 58.942 52.381 0.00 0.00 0.00 1.73
2341 2814 3.116512 TCCCCACTATGACCAGCCTTATA 60.117 47.826 0.00 0.00 0.00 0.98
2342 2815 3.846588 CCCCACTATGACCAGCCTTATAT 59.153 47.826 0.00 0.00 0.00 0.86
2343 2816 4.289672 CCCCACTATGACCAGCCTTATATT 59.710 45.833 0.00 0.00 0.00 1.28
2344 2817 5.487488 CCCCACTATGACCAGCCTTATATTA 59.513 44.000 0.00 0.00 0.00 0.98
2345 2818 6.407202 CCCACTATGACCAGCCTTATATTAC 58.593 44.000 0.00 0.00 0.00 1.89
2346 2819 6.407202 CCACTATGACCAGCCTTATATTACC 58.593 44.000 0.00 0.00 0.00 2.85
2347 2820 6.407202 CACTATGACCAGCCTTATATTACCC 58.593 44.000 0.00 0.00 0.00 3.69
2348 2821 6.013725 CACTATGACCAGCCTTATATTACCCA 60.014 42.308 0.00 0.00 0.00 4.51
2349 2822 6.735704 ACTATGACCAGCCTTATATTACCCAT 59.264 38.462 0.00 0.00 0.00 4.00
2424 2910 1.677966 GGAACTCCCGAAAAGGCCC 60.678 63.158 0.00 0.00 39.21 5.80
2444 2948 1.136774 CACTCGAGTCCGATTCGCA 59.863 57.895 16.96 0.00 44.62 5.10
2460 2964 1.586154 CGCACAACCATTCCCACCTC 61.586 60.000 0.00 0.00 0.00 3.85
2462 2966 1.538047 CACAACCATTCCCACCTCAG 58.462 55.000 0.00 0.00 0.00 3.35
2829 3333 5.407502 TCATGAACAAGTACATGTACCTCG 58.592 41.667 28.29 19.90 42.75 4.63
2895 3399 1.281867 TCCTTGGTGCTGGAATGGTAG 59.718 52.381 0.00 0.00 0.00 3.18
2975 3659 4.099881 TCTTGCTTCCTTTTTGCTGACAAT 59.900 37.500 0.00 0.00 35.21 2.71
3077 3794 6.109156 TGAATGGTGTGCTCTTCTTACTTA 57.891 37.500 0.00 0.00 0.00 2.24
3098 3815 1.073098 AGGATCCAAAAACCGAGGGT 58.927 50.000 15.82 0.00 37.65 4.34
3374 4091 1.040893 TGATGTACGACGGGCAGGAT 61.041 55.000 0.00 0.00 0.00 3.24
3754 4487 0.389426 CTGCATGTGCCAAAGAAGCC 60.389 55.000 2.07 0.00 41.18 4.35
3839 4588 8.260114 GTCCATTTTGAATATTGGATTTGGACT 58.740 33.333 19.54 0.00 43.72 3.85
3856 4605 8.980481 ATTTGGACTTGTATAACCATCTAAGG 57.020 34.615 0.00 0.00 32.31 2.69
3941 4694 7.559897 TCTTCCCCTATAACCAAATTGACATTC 59.440 37.037 0.00 0.00 0.00 2.67
4025 4908 1.508088 CGGCCATTGGAGAAGTTGC 59.492 57.895 6.95 0.00 0.00 4.17
4035 4918 2.027385 GGAGAAGTTGCATTGGGGATC 58.973 52.381 0.00 0.00 0.00 3.36
4040 4923 1.565759 AGTTGCATTGGGGATCTGCTA 59.434 47.619 5.60 0.00 36.84 3.49
4041 4924 1.678101 GTTGCATTGGGGATCTGCTAC 59.322 52.381 5.60 4.51 36.84 3.58
4042 4925 0.179048 TGCATTGGGGATCTGCTACG 60.179 55.000 5.60 0.00 36.84 3.51
4043 4926 0.886490 GCATTGGGGATCTGCTACGG 60.886 60.000 0.00 0.00 33.15 4.02
4044 4927 0.886490 CATTGGGGATCTGCTACGGC 60.886 60.000 0.00 0.00 39.26 5.68
4045 4928 2.056906 ATTGGGGATCTGCTACGGCC 62.057 60.000 0.00 0.00 37.74 6.13
4046 4929 2.844839 GGGGATCTGCTACGGCCT 60.845 66.667 0.00 0.00 37.74 5.19
4047 4930 1.533273 GGGGATCTGCTACGGCCTA 60.533 63.158 0.00 0.00 37.74 3.93
4116 4999 6.434340 CCAATAAGCATTTATAGGGGAAGGTC 59.566 42.308 0.00 0.00 0.00 3.85
4130 5013 2.959030 GGAAGGTCTTTTGGAAAGCTGT 59.041 45.455 0.00 0.00 0.00 4.40
4201 8991 3.699671 GTGCGCACCAAACCAAAC 58.300 55.556 30.12 0.00 0.00 2.93
4202 8992 1.140804 GTGCGCACCAAACCAAACT 59.859 52.632 30.12 0.00 0.00 2.66
4204 8994 0.459237 TGCGCACCAAACCAAACTTG 60.459 50.000 5.66 0.00 0.00 3.16
4214 9006 6.257630 CACCAAACCAAACTTGATTACCAAAG 59.742 38.462 0.00 0.00 33.76 2.77
4232 9024 1.276622 AGGCAACACTGGTACCCTAG 58.723 55.000 10.07 3.26 41.41 3.02
4234 9026 1.626825 GGCAACACTGGTACCCTAGAA 59.373 52.381 10.07 0.00 0.00 2.10
4238 9030 4.765339 GCAACACTGGTACCCTAGAAAAAT 59.235 41.667 10.07 0.00 0.00 1.82
4239 9031 5.941647 GCAACACTGGTACCCTAGAAAAATA 59.058 40.000 10.07 0.00 0.00 1.40
4263 9055 1.609208 ACAAAGGCAGCACTGGTAAG 58.391 50.000 0.00 0.00 0.00 2.34
4279 9071 5.163195 ACTGGTAAGTCAAGACCAATCAACT 60.163 40.000 0.00 0.00 45.03 3.16
4289 9081 4.072131 AGACCAATCAACTGCGTATGTTT 58.928 39.130 0.00 0.00 0.00 2.83
4290 9082 4.083324 AGACCAATCAACTGCGTATGTTTG 60.083 41.667 0.00 0.00 0.00 2.93
4396 9188 2.987232 ACTATTTTTCTCTGCCCCGAC 58.013 47.619 0.00 0.00 0.00 4.79
4405 9197 0.896940 TCTGCCCCGACGTAGAAACT 60.897 55.000 0.00 0.00 0.00 2.66
4411 9203 1.000060 CCCGACGTAGAAACTCAACCA 60.000 52.381 0.00 0.00 0.00 3.67
4416 9208 5.337554 CGACGTAGAAACTCAACCATATCA 58.662 41.667 0.00 0.00 0.00 2.15
4419 9211 7.808381 CGACGTAGAAACTCAACCATATCATAT 59.192 37.037 0.00 0.00 0.00 1.78
4420 9212 8.818141 ACGTAGAAACTCAACCATATCATATG 57.182 34.615 0.00 0.00 0.00 1.78
4431 9223 5.878406 CCATATCATATGGTACTCCCTCC 57.122 47.826 14.96 0.00 34.56 4.30
4432 9224 5.280499 CCATATCATATGGTACTCCCTCCA 58.720 45.833 14.96 0.00 38.14 3.86
4433 9225 5.907662 CCATATCATATGGTACTCCCTCCAT 59.092 44.000 14.96 0.00 45.10 3.41
4435 9227 7.234371 CCATATCATATGGTACTCCCTCCATAG 59.766 44.444 14.96 3.51 45.80 2.23
4438 9230 2.359981 TGGTACTCCCTCCATAGACG 57.640 55.000 0.00 0.00 0.00 4.18
4439 9231 1.567649 TGGTACTCCCTCCATAGACGT 59.432 52.381 0.00 0.00 0.00 4.34
4440 9232 2.024655 TGGTACTCCCTCCATAGACGTT 60.025 50.000 0.00 0.00 0.00 3.99
4441 9233 3.029570 GGTACTCCCTCCATAGACGTTT 58.970 50.000 0.00 0.00 0.00 3.60
4442 9234 3.450096 GGTACTCCCTCCATAGACGTTTT 59.550 47.826 0.00 0.00 0.00 2.43
4445 9237 2.236395 CTCCCTCCATAGACGTTTTGGT 59.764 50.000 10.86 0.00 0.00 3.67
4448 9240 3.431766 CCCTCCATAGACGTTTTGGTAGG 60.432 52.174 10.86 13.73 32.30 3.18
4480 9415 1.851021 TTGCCAACGAATCGCAGTGG 61.851 55.000 14.00 14.00 33.30 4.00
4493 9428 1.393539 CGCAGTGGTCCAGTTTATTCG 59.606 52.381 0.00 0.00 0.00 3.34
4522 9459 4.953579 AGTGAACCCTCAGCAAACTAAAAA 59.046 37.500 0.00 0.00 30.14 1.94
4546 9483 3.688272 CCATGCTAAATGAAGCTTGTCG 58.312 45.455 2.10 0.00 42.89 4.35
4557 9494 3.055385 TGAAGCTTGTCGGTTAGCCTTAT 60.055 43.478 2.10 0.00 38.14 1.73
4558 9495 4.160814 TGAAGCTTGTCGGTTAGCCTTATA 59.839 41.667 2.10 0.00 38.14 0.98
4612 9549 4.256920 GAGATGAAATGTATATGGCCGCT 58.743 43.478 0.00 0.00 0.00 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 81 3.761218 AGTGACCAATGTTCACACAACAA 59.239 39.130 13.26 0.00 36.16 2.83
67 82 3.351740 AGTGACCAATGTTCACACAACA 58.648 40.909 13.26 0.00 36.16 3.33
68 83 3.627577 AGAGTGACCAATGTTCACACAAC 59.372 43.478 13.26 2.38 36.16 3.32
259 298 1.837051 AGTTCGACCAGACCCAGCA 60.837 57.895 0.00 0.00 0.00 4.41
405 602 8.572185 TCCGAATTCAAATTGAACATTGAGTTA 58.428 29.630 10.91 0.00 39.45 2.24
446 643 9.612066 ATTTTCTAAATTTTCTTGTTTGGAGCA 57.388 25.926 0.00 0.00 0.00 4.26
567 765 7.770897 AGGTGCAGGAATAAATAGTAAGAAGTG 59.229 37.037 0.00 0.00 0.00 3.16
576 1035 7.607991 CCAATAGGTAGGTGCAGGAATAAATAG 59.392 40.741 0.00 0.00 0.00 1.73
577 1036 7.458397 CCAATAGGTAGGTGCAGGAATAAATA 58.542 38.462 0.00 0.00 0.00 1.40
578 1037 6.306987 CCAATAGGTAGGTGCAGGAATAAAT 58.693 40.000 0.00 0.00 0.00 1.40
648 1107 5.612725 AAAACAAGCCCTTCAGAAATTCA 57.387 34.783 0.00 0.00 0.00 2.57
649 1108 5.466728 GGAAAAACAAGCCCTTCAGAAATTC 59.533 40.000 0.00 0.00 0.00 2.17
664 1123 1.143277 TCTAGCGTGGGGGAAAAACAA 59.857 47.619 0.00 0.00 0.00 2.83
666 1125 1.450025 CTCTAGCGTGGGGGAAAAAC 58.550 55.000 0.00 0.00 0.00 2.43
686 1145 7.328737 AGTCCCAAATACGCCAATATATACTC 58.671 38.462 0.00 0.00 0.00 2.59
687 1146 7.038587 TGAGTCCCAAATACGCCAATATATACT 60.039 37.037 0.00 0.00 0.00 2.12
688 1147 7.101054 TGAGTCCCAAATACGCCAATATATAC 58.899 38.462 0.00 0.00 0.00 1.47
780 1246 1.629043 ACTTCTGACCTGACGGCTTA 58.371 50.000 0.00 0.00 0.00 3.09
821 1287 3.728385 AAATGGAGGAGAGGAAACTGG 57.272 47.619 0.00 0.00 44.43 4.00
875 1341 1.205893 GGTAGAGTGAGCAGTTGGGAG 59.794 57.143 0.00 0.00 0.00 4.30
877 1343 1.205893 GAGGTAGAGTGAGCAGTTGGG 59.794 57.143 0.00 0.00 0.00 4.12
1134 1600 9.574516 GAAGAGGAATATATAACCAACCACAAT 57.425 33.333 10.27 0.00 0.00 2.71
1199 1665 4.785346 ATACCAGCTCAACCAAGATCAT 57.215 40.909 0.00 0.00 0.00 2.45
1217 1683 4.927425 TCTCGTGTCCAAGTAGCAAAATAC 59.073 41.667 0.00 0.00 0.00 1.89
1237 1703 0.315568 ATAACCGCTCGCCATCTCTC 59.684 55.000 0.00 0.00 0.00 3.20
1250 1716 4.513442 TCATTCCCAAGACAGAATAACCG 58.487 43.478 0.00 0.00 31.55 4.44
1705 2178 0.173708 GACTACAGAACCGAGCAGGG 59.826 60.000 3.26 0.00 46.96 4.45
1805 2278 5.240623 ACATGCAAGAGGAAAACGTAATGAA 59.759 36.000 0.00 0.00 0.00 2.57
1857 2330 7.101652 TCGATGCTACTCAGATACTCTTTTT 57.898 36.000 0.00 0.00 0.00 1.94
1890 2363 7.756722 CCAAAACTAAGTGCTAATTTCCATGAG 59.243 37.037 0.00 0.00 0.00 2.90
1919 2392 1.241165 CTTGTGAGCTGTGGCAATGA 58.759 50.000 0.00 0.00 41.70 2.57
1948 2421 8.114331 ACACTAGATCATGCAAATTCAAGAAA 57.886 30.769 0.00 0.00 0.00 2.52
1966 2439 8.911918 TTTACTTCCAGCAAATTAACACTAGA 57.088 30.769 0.00 0.00 0.00 2.43
2065 2538 4.216708 AGTTACTCCCACTATGACTAGCC 58.783 47.826 0.00 0.00 0.00 3.93
2066 2539 5.855740 AAGTTACTCCCACTATGACTAGC 57.144 43.478 0.00 0.00 0.00 3.42
2067 2540 6.546403 TGCTAAGTTACTCCCACTATGACTAG 59.454 42.308 0.00 0.00 0.00 2.57
2070 2543 5.593679 TGCTAAGTTACTCCCACTATGAC 57.406 43.478 0.00 0.00 0.00 3.06
2074 2547 6.494491 TGTTACTTGCTAAGTTACTCCCACTA 59.506 38.462 14.64 0.00 40.62 2.74
2075 2548 5.306160 TGTTACTTGCTAAGTTACTCCCACT 59.694 40.000 14.64 0.00 40.62 4.00
2076 2549 5.544650 TGTTACTTGCTAAGTTACTCCCAC 58.455 41.667 14.64 0.00 40.62 4.61
2077 2550 5.811796 TGTTACTTGCTAAGTTACTCCCA 57.188 39.130 14.64 0.00 40.62 4.37
2078 2551 6.479331 GCTATGTTACTTGCTAAGTTACTCCC 59.521 42.308 14.64 3.51 40.62 4.30
2079 2552 6.198591 CGCTATGTTACTTGCTAAGTTACTCC 59.801 42.308 14.64 5.01 40.62 3.85
2080 2553 6.291690 GCGCTATGTTACTTGCTAAGTTACTC 60.292 42.308 0.00 5.69 40.62 2.59
2081 2554 5.519206 GCGCTATGTTACTTGCTAAGTTACT 59.481 40.000 0.00 0.00 40.62 2.24
2082 2555 5.290158 TGCGCTATGTTACTTGCTAAGTTAC 59.710 40.000 9.73 8.42 42.81 2.50
2083 2556 5.412640 TGCGCTATGTTACTTGCTAAGTTA 58.587 37.500 9.73 0.00 42.81 2.24
2084 2557 4.250464 TGCGCTATGTTACTTGCTAAGTT 58.750 39.130 9.73 0.00 42.81 2.66
2085 2558 3.857052 TGCGCTATGTTACTTGCTAAGT 58.143 40.909 9.73 6.74 45.40 2.24
2086 2559 3.865745 ACTGCGCTATGTTACTTGCTAAG 59.134 43.478 9.73 0.00 0.00 2.18
2087 2560 3.857052 ACTGCGCTATGTTACTTGCTAA 58.143 40.909 9.73 0.00 0.00 3.09
2088 2561 3.444916 GACTGCGCTATGTTACTTGCTA 58.555 45.455 9.73 0.00 0.00 3.49
2089 2562 2.271800 GACTGCGCTATGTTACTTGCT 58.728 47.619 9.73 0.00 0.00 3.91
2090 2563 1.327764 GGACTGCGCTATGTTACTTGC 59.672 52.381 9.73 0.00 0.00 4.01
2091 2564 2.616960 TGGACTGCGCTATGTTACTTG 58.383 47.619 9.73 0.00 0.00 3.16
2092 2565 3.328382 TTGGACTGCGCTATGTTACTT 57.672 42.857 9.73 0.00 0.00 2.24
2093 2566 3.543680 ATTGGACTGCGCTATGTTACT 57.456 42.857 9.73 0.00 0.00 2.24
2094 2567 4.116961 TGTATTGGACTGCGCTATGTTAC 58.883 43.478 9.73 5.38 0.00 2.50
2095 2568 4.394439 TGTATTGGACTGCGCTATGTTA 57.606 40.909 9.73 0.00 0.00 2.41
2096 2569 3.260475 TGTATTGGACTGCGCTATGTT 57.740 42.857 9.73 0.00 0.00 2.71
2097 2570 2.979814 TGTATTGGACTGCGCTATGT 57.020 45.000 9.73 4.80 0.00 2.29
2098 2571 4.818534 ATTTGTATTGGACTGCGCTATG 57.181 40.909 9.73 0.99 0.00 2.23
2099 2572 5.581605 CAAATTTGTATTGGACTGCGCTAT 58.418 37.500 9.73 0.00 0.00 2.97
2100 2573 4.674101 GCAAATTTGTATTGGACTGCGCTA 60.674 41.667 19.03 0.00 0.00 4.26
2101 2574 3.836949 CAAATTTGTATTGGACTGCGCT 58.163 40.909 9.73 0.00 0.00 5.92
2102 2575 2.345341 GCAAATTTGTATTGGACTGCGC 59.655 45.455 19.03 0.00 0.00 6.09
2103 2576 3.836949 AGCAAATTTGTATTGGACTGCG 58.163 40.909 19.03 0.00 31.92 5.18
2104 2577 6.813152 ACATAAGCAAATTTGTATTGGACTGC 59.187 34.615 19.03 1.79 0.00 4.40
2105 2578 7.276218 CCACATAAGCAAATTTGTATTGGACTG 59.724 37.037 19.03 12.28 0.00 3.51
2106 2579 7.322664 CCACATAAGCAAATTTGTATTGGACT 58.677 34.615 19.03 3.48 0.00 3.85
2107 2580 6.035975 GCCACATAAGCAAATTTGTATTGGAC 59.964 38.462 19.03 11.28 0.00 4.02
2108 2581 6.105333 GCCACATAAGCAAATTTGTATTGGA 58.895 36.000 19.03 2.43 0.00 3.53
2109 2582 5.873712 TGCCACATAAGCAAATTTGTATTGG 59.126 36.000 19.03 17.02 37.28 3.16
2110 2583 6.964741 TGCCACATAAGCAAATTTGTATTG 57.035 33.333 19.03 13.45 37.28 1.90
2111 2584 7.104939 ACATGCCACATAAGCAAATTTGTATT 58.895 30.769 19.03 15.65 44.83 1.89
2112 2585 6.642430 ACATGCCACATAAGCAAATTTGTAT 58.358 32.000 19.03 10.83 44.83 2.29
2113 2586 6.035368 ACATGCCACATAAGCAAATTTGTA 57.965 33.333 19.03 5.59 44.83 2.41
2114 2587 4.897140 ACATGCCACATAAGCAAATTTGT 58.103 34.783 19.03 3.40 44.83 2.83
2115 2588 7.542534 AATACATGCCACATAAGCAAATTTG 57.457 32.000 14.03 14.03 44.83 2.32
2116 2589 9.664332 TTAAATACATGCCACATAAGCAAATTT 57.336 25.926 0.00 0.00 44.83 1.82
2117 2590 9.835389 ATTAAATACATGCCACATAAGCAAATT 57.165 25.926 0.00 0.00 44.83 1.82
2121 2594 9.964303 CTTTATTAAATACATGCCACATAAGCA 57.036 29.630 0.00 0.00 45.94 3.91
2126 2599 9.851686 TCTCTCTTTATTAAATACATGCCACAT 57.148 29.630 0.00 0.00 0.00 3.21
2127 2600 9.851686 ATCTCTCTTTATTAAATACATGCCACA 57.148 29.630 0.00 0.00 0.00 4.17
2129 2602 9.851686 ACATCTCTCTTTATTAAATACATGCCA 57.148 29.630 0.00 0.00 0.00 4.92
2174 2647 5.100259 TGAGAAGCGCTATGTTACAGTAAC 58.900 41.667 12.05 15.58 39.11 2.50
2175 2648 5.319140 TGAGAAGCGCTATGTTACAGTAA 57.681 39.130 12.05 0.00 0.00 2.24
2176 2649 4.976224 TGAGAAGCGCTATGTTACAGTA 57.024 40.909 12.05 0.00 0.00 2.74
2177 2650 3.868757 TGAGAAGCGCTATGTTACAGT 57.131 42.857 12.05 0.00 0.00 3.55
2178 2651 4.424626 TCTTGAGAAGCGCTATGTTACAG 58.575 43.478 12.05 1.15 0.00 2.74
2179 2652 4.157840 TCTCTTGAGAAGCGCTATGTTACA 59.842 41.667 12.05 2.80 0.00 2.41
2180 2653 4.673441 TCTCTTGAGAAGCGCTATGTTAC 58.327 43.478 12.05 0.00 0.00 2.50
2181 2654 4.983671 TCTCTTGAGAAGCGCTATGTTA 57.016 40.909 12.05 0.00 0.00 2.41
2182 2655 3.876274 TCTCTTGAGAAGCGCTATGTT 57.124 42.857 12.05 0.00 0.00 2.71
2183 2656 3.445450 TCTTCTCTTGAGAAGCGCTATGT 59.555 43.478 26.75 0.00 43.54 2.29
2184 2657 4.039151 TCTTCTCTTGAGAAGCGCTATG 57.961 45.455 26.75 10.11 43.54 2.23
2185 2658 4.340666 TCATCTTCTCTTGAGAAGCGCTAT 59.659 41.667 26.75 16.49 43.54 2.97
2186 2659 3.696548 TCATCTTCTCTTGAGAAGCGCTA 59.303 43.478 26.75 15.28 43.54 4.26
2187 2660 2.495270 TCATCTTCTCTTGAGAAGCGCT 59.505 45.455 26.75 2.64 43.54 5.92
2188 2661 2.859538 CTCATCTTCTCTTGAGAAGCGC 59.140 50.000 26.75 0.00 43.54 5.92
2189 2662 4.104776 GACTCATCTTCTCTTGAGAAGCG 58.895 47.826 26.75 21.25 43.54 4.68
2190 2663 5.329035 AGACTCATCTTCTCTTGAGAAGC 57.671 43.478 26.75 16.00 43.54 3.86
2191 2664 7.389803 TGTAGACTCATCTTCTCTTGAGAAG 57.610 40.000 26.02 26.02 44.80 2.85
2192 2665 7.576666 GCTTGTAGACTCATCTTCTCTTGAGAA 60.577 40.741 11.90 11.90 41.53 2.87
2193 2666 6.127758 GCTTGTAGACTCATCTTCTCTTGAGA 60.128 42.308 6.91 0.00 41.53 3.27
2194 2667 6.035843 GCTTGTAGACTCATCTTCTCTTGAG 58.964 44.000 0.00 0.00 43.97 3.02
2195 2668 5.714333 AGCTTGTAGACTCATCTTCTCTTGA 59.286 40.000 0.00 0.00 36.29 3.02
2196 2669 5.964758 AGCTTGTAGACTCATCTTCTCTTG 58.035 41.667 0.00 0.00 36.29 3.02
2197 2670 7.710676 TTAGCTTGTAGACTCATCTTCTCTT 57.289 36.000 0.00 0.00 36.29 2.85
2198 2671 7.896383 ATTAGCTTGTAGACTCATCTTCTCT 57.104 36.000 0.00 0.00 36.29 3.10
2206 2679 9.162764 GGTTTCATTTATTAGCTTGTAGACTCA 57.837 33.333 0.00 0.00 0.00 3.41
2207 2680 9.162764 TGGTTTCATTTATTAGCTTGTAGACTC 57.837 33.333 0.00 0.00 0.00 3.36
2208 2681 9.686683 ATGGTTTCATTTATTAGCTTGTAGACT 57.313 29.630 0.00 0.00 0.00 3.24
2209 2682 9.937175 GATGGTTTCATTTATTAGCTTGTAGAC 57.063 33.333 0.00 0.00 32.98 2.59
2210 2683 9.905713 AGATGGTTTCATTTATTAGCTTGTAGA 57.094 29.630 0.00 0.00 32.98 2.59
2216 2689 9.851686 TGTCATAGATGGTTTCATTTATTAGCT 57.148 29.630 0.00 0.00 30.94 3.32
2217 2690 9.884465 GTGTCATAGATGGTTTCATTTATTAGC 57.116 33.333 0.00 0.00 30.94 3.09
2223 2696 9.601217 GTAGTAGTGTCATAGATGGTTTCATTT 57.399 33.333 0.00 0.00 32.98 2.32
2224 2697 8.982723 AGTAGTAGTGTCATAGATGGTTTCATT 58.017 33.333 0.00 0.00 32.98 2.57
2225 2698 8.540507 AGTAGTAGTGTCATAGATGGTTTCAT 57.459 34.615 0.00 0.00 36.09 2.57
2226 2699 7.956328 AGTAGTAGTGTCATAGATGGTTTCA 57.044 36.000 0.00 0.00 0.00 2.69
2227 2700 9.900710 CATAGTAGTAGTGTCATAGATGGTTTC 57.099 37.037 0.00 0.00 0.00 2.78
2228 2701 9.422681 ACATAGTAGTAGTGTCATAGATGGTTT 57.577 33.333 0.00 0.00 0.00 3.27
2229 2702 8.998277 ACATAGTAGTAGTGTCATAGATGGTT 57.002 34.615 0.00 0.00 0.00 3.67
2230 2703 8.998277 AACATAGTAGTAGTGTCATAGATGGT 57.002 34.615 0.00 0.00 0.00 3.55
2237 2710 8.528643 TGCAAAGTAACATAGTAGTAGTGTCAT 58.471 33.333 0.00 0.00 0.00 3.06
2238 2711 7.811236 GTGCAAAGTAACATAGTAGTAGTGTCA 59.189 37.037 0.00 0.00 0.00 3.58
2239 2712 8.027771 AGTGCAAAGTAACATAGTAGTAGTGTC 58.972 37.037 0.00 0.00 0.00 3.67
2240 2713 7.893658 AGTGCAAAGTAACATAGTAGTAGTGT 58.106 34.615 0.00 0.00 0.00 3.55
2243 2716 9.464714 CCATAGTGCAAAGTAACATAGTAGTAG 57.535 37.037 0.00 0.00 0.00 2.57
2244 2717 9.192642 TCCATAGTGCAAAGTAACATAGTAGTA 57.807 33.333 0.00 0.00 0.00 1.82
2245 2718 8.074613 TCCATAGTGCAAAGTAACATAGTAGT 57.925 34.615 0.00 0.00 0.00 2.73
2246 2719 8.414003 TCTCCATAGTGCAAAGTAACATAGTAG 58.586 37.037 0.00 0.00 0.00 2.57
2247 2720 8.301252 TCTCCATAGTGCAAAGTAACATAGTA 57.699 34.615 0.00 0.00 0.00 1.82
2248 2721 7.182817 TCTCCATAGTGCAAAGTAACATAGT 57.817 36.000 0.00 0.00 0.00 2.12
2249 2722 7.172190 CCATCTCCATAGTGCAAAGTAACATAG 59.828 40.741 0.00 0.00 0.00 2.23
2250 2723 6.992123 CCATCTCCATAGTGCAAAGTAACATA 59.008 38.462 0.00 0.00 0.00 2.29
2251 2724 5.824624 CCATCTCCATAGTGCAAAGTAACAT 59.175 40.000 0.00 0.00 0.00 2.71
2252 2725 5.185454 CCATCTCCATAGTGCAAAGTAACA 58.815 41.667 0.00 0.00 0.00 2.41
2253 2726 5.186198 ACCATCTCCATAGTGCAAAGTAAC 58.814 41.667 0.00 0.00 0.00 2.50
2254 2727 5.435686 ACCATCTCCATAGTGCAAAGTAA 57.564 39.130 0.00 0.00 0.00 2.24
2255 2728 6.156256 AGTTACCATCTCCATAGTGCAAAGTA 59.844 38.462 0.00 0.00 0.00 2.24
2256 2729 5.045578 AGTTACCATCTCCATAGTGCAAAGT 60.046 40.000 0.00 0.00 0.00 2.66
2257 2730 5.431765 AGTTACCATCTCCATAGTGCAAAG 58.568 41.667 0.00 0.00 0.00 2.77
2258 2731 5.435686 AGTTACCATCTCCATAGTGCAAA 57.564 39.130 0.00 0.00 0.00 3.68
2259 2732 5.435686 AAGTTACCATCTCCATAGTGCAA 57.564 39.130 0.00 0.00 0.00 4.08
2260 2733 5.897250 TCTAAGTTACCATCTCCATAGTGCA 59.103 40.000 0.00 0.00 0.00 4.57
2261 2734 6.041069 AGTCTAAGTTACCATCTCCATAGTGC 59.959 42.308 0.00 0.00 0.00 4.40
2262 2735 7.589958 AGTCTAAGTTACCATCTCCATAGTG 57.410 40.000 0.00 0.00 0.00 2.74
2263 2736 8.504409 ACTAGTCTAAGTTACCATCTCCATAGT 58.496 37.037 0.00 0.00 0.00 2.12
2264 2737 8.788806 CACTAGTCTAAGTTACCATCTCCATAG 58.211 40.741 0.00 0.00 0.00 2.23
2265 2738 8.280084 ACACTAGTCTAAGTTACCATCTCCATA 58.720 37.037 0.00 0.00 0.00 2.74
2266 2739 7.126733 ACACTAGTCTAAGTTACCATCTCCAT 58.873 38.462 0.00 0.00 0.00 3.41
2267 2740 6.491383 ACACTAGTCTAAGTTACCATCTCCA 58.509 40.000 0.00 0.00 0.00 3.86
2268 2741 6.602406 TGACACTAGTCTAAGTTACCATCTCC 59.398 42.308 0.00 0.00 45.20 3.71
2269 2742 7.627298 TGACACTAGTCTAAGTTACCATCTC 57.373 40.000 0.00 0.00 45.20 2.75
2270 2743 9.869667 ATATGACACTAGTCTAAGTTACCATCT 57.130 33.333 0.00 0.00 45.20 2.90
2271 2744 9.900710 CATATGACACTAGTCTAAGTTACCATC 57.099 37.037 0.00 0.00 45.20 3.51
2272 2745 8.361139 GCATATGACACTAGTCTAAGTTACCAT 58.639 37.037 6.97 0.00 45.20 3.55
2273 2746 7.340999 TGCATATGACACTAGTCTAAGTTACCA 59.659 37.037 6.97 0.00 45.20 3.25
2274 2747 7.713750 TGCATATGACACTAGTCTAAGTTACC 58.286 38.462 6.97 0.00 45.20 2.85
2275 2748 9.186323 CATGCATATGACACTAGTCTAAGTTAC 57.814 37.037 6.97 0.00 45.20 2.50
2276 2749 9.131791 TCATGCATATGACACTAGTCTAAGTTA 57.868 33.333 6.97 0.00 45.20 2.24
2277 2750 8.011844 TCATGCATATGACACTAGTCTAAGTT 57.988 34.615 6.97 0.00 45.20 2.66
2278 2751 7.588497 TCATGCATATGACACTAGTCTAAGT 57.412 36.000 6.97 0.00 45.20 2.24
2295 2768 8.361139 GGAGTAACTTATACTACTGTCATGCAT 58.639 37.037 0.00 0.00 0.00 3.96
2296 2769 7.201884 GGGAGTAACTTATACTACTGTCATGCA 60.202 40.741 0.00 0.00 0.00 3.96
2297 2770 7.146648 GGGAGTAACTTATACTACTGTCATGC 58.853 42.308 0.00 0.00 0.00 4.06
2298 2771 7.287005 TGGGGAGTAACTTATACTACTGTCATG 59.713 40.741 0.00 0.00 0.00 3.07
2299 2772 7.287235 GTGGGGAGTAACTTATACTACTGTCAT 59.713 40.741 0.00 0.00 0.00 3.06
2300 2773 6.604795 GTGGGGAGTAACTTATACTACTGTCA 59.395 42.308 0.00 0.00 0.00 3.58
2301 2774 6.832900 AGTGGGGAGTAACTTATACTACTGTC 59.167 42.308 0.00 0.00 0.00 3.51
2302 2775 6.739664 AGTGGGGAGTAACTTATACTACTGT 58.260 40.000 0.00 0.00 0.00 3.55
2303 2776 8.794553 CATAGTGGGGAGTAACTTATACTACTG 58.205 40.741 0.00 0.00 0.00 2.74
2304 2777 8.730948 TCATAGTGGGGAGTAACTTATACTACT 58.269 37.037 0.00 0.00 0.00 2.57
2305 2778 8.791675 GTCATAGTGGGGAGTAACTTATACTAC 58.208 40.741 0.00 0.00 0.00 2.73
2306 2779 7.946776 GGTCATAGTGGGGAGTAACTTATACTA 59.053 40.741 0.00 0.00 0.00 1.82
2307 2780 6.781507 GGTCATAGTGGGGAGTAACTTATACT 59.218 42.308 0.00 0.00 0.00 2.12
2308 2781 6.552350 TGGTCATAGTGGGGAGTAACTTATAC 59.448 42.308 0.00 0.00 0.00 1.47
2309 2782 6.685541 TGGTCATAGTGGGGAGTAACTTATA 58.314 40.000 0.00 0.00 0.00 0.98
2310 2783 5.535029 TGGTCATAGTGGGGAGTAACTTAT 58.465 41.667 0.00 0.00 0.00 1.73
2311 2784 4.950361 TGGTCATAGTGGGGAGTAACTTA 58.050 43.478 0.00 0.00 0.00 2.24
2312 2785 3.775316 CTGGTCATAGTGGGGAGTAACTT 59.225 47.826 0.00 0.00 0.00 2.66
2313 2786 3.375699 CTGGTCATAGTGGGGAGTAACT 58.624 50.000 0.00 0.00 0.00 2.24
2314 2787 2.158943 GCTGGTCATAGTGGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
2315 2788 2.116238 GCTGGTCATAGTGGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
2316 2789 1.691482 GGCTGGTCATAGTGGGGAGTA 60.691 57.143 0.00 0.00 0.00 2.59
2317 2790 0.983378 GGCTGGTCATAGTGGGGAGT 60.983 60.000 0.00 0.00 0.00 3.85
2318 2791 0.692419 AGGCTGGTCATAGTGGGGAG 60.692 60.000 0.00 0.00 0.00 4.30
2319 2792 0.253160 AAGGCTGGTCATAGTGGGGA 60.253 55.000 0.00 0.00 0.00 4.81
2320 2793 1.507140 TAAGGCTGGTCATAGTGGGG 58.493 55.000 0.00 0.00 0.00 4.96
2321 2794 5.505181 AATATAAGGCTGGTCATAGTGGG 57.495 43.478 0.00 0.00 0.00 4.61
2322 2795 6.407202 GGTAATATAAGGCTGGTCATAGTGG 58.593 44.000 0.00 0.00 0.00 4.00
2323 2796 6.013725 TGGGTAATATAAGGCTGGTCATAGTG 60.014 42.308 0.00 0.00 0.00 2.74
2324 2797 6.088819 TGGGTAATATAAGGCTGGTCATAGT 58.911 40.000 0.00 0.00 0.00 2.12
2325 2798 6.620877 TGGGTAATATAAGGCTGGTCATAG 57.379 41.667 0.00 0.00 0.00 2.23
2326 2799 7.582909 AATGGGTAATATAAGGCTGGTCATA 57.417 36.000 0.00 0.00 0.00 2.15
2327 2800 6.468972 AATGGGTAATATAAGGCTGGTCAT 57.531 37.500 0.00 0.00 0.00 3.06
2328 2801 5.922960 AATGGGTAATATAAGGCTGGTCA 57.077 39.130 0.00 0.00 0.00 4.02
2329 2802 7.255836 GGAAAAATGGGTAATATAAGGCTGGTC 60.256 40.741 0.00 0.00 0.00 4.02
2330 2803 6.553476 GGAAAAATGGGTAATATAAGGCTGGT 59.447 38.462 0.00 0.00 0.00 4.00
2331 2804 6.014584 GGGAAAAATGGGTAATATAAGGCTGG 60.015 42.308 0.00 0.00 0.00 4.85
2332 2805 6.553100 TGGGAAAAATGGGTAATATAAGGCTG 59.447 38.462 0.00 0.00 0.00 4.85
2333 2806 6.688554 TGGGAAAAATGGGTAATATAAGGCT 58.311 36.000 0.00 0.00 0.00 4.58
2334 2807 6.987403 TGGGAAAAATGGGTAATATAAGGC 57.013 37.500 0.00 0.00 0.00 4.35
2339 2812 9.951866 AAGAGTAATGGGAAAAATGGGTAATAT 57.048 29.630 0.00 0.00 0.00 1.28
2340 2813 9.196139 CAAGAGTAATGGGAAAAATGGGTAATA 57.804 33.333 0.00 0.00 0.00 0.98
2341 2814 7.678171 ACAAGAGTAATGGGAAAAATGGGTAAT 59.322 33.333 0.00 0.00 0.00 1.89
2342 2815 7.013834 ACAAGAGTAATGGGAAAAATGGGTAA 58.986 34.615 0.00 0.00 0.00 2.85
2343 2816 6.435904 CACAAGAGTAATGGGAAAAATGGGTA 59.564 38.462 0.00 0.00 0.00 3.69
2344 2817 5.245977 CACAAGAGTAATGGGAAAAATGGGT 59.754 40.000 0.00 0.00 0.00 4.51
2345 2818 5.723295 CACAAGAGTAATGGGAAAAATGGG 58.277 41.667 0.00 0.00 0.00 4.00
2346 2819 5.170748 GCACAAGAGTAATGGGAAAAATGG 58.829 41.667 0.00 0.00 0.00 3.16
2347 2820 5.047092 AGGCACAAGAGTAATGGGAAAAATG 60.047 40.000 0.00 0.00 0.00 2.32
2348 2821 5.086621 AGGCACAAGAGTAATGGGAAAAAT 58.913 37.500 0.00 0.00 0.00 1.82
2349 2822 4.479158 AGGCACAAGAGTAATGGGAAAAA 58.521 39.130 0.00 0.00 0.00 1.94
2444 2948 1.444933 TCTGAGGTGGGAATGGTTGT 58.555 50.000 0.00 0.00 0.00 3.32
2460 2964 6.203723 AGTGAATCGAAAACTTCCTTCTTCTG 59.796 38.462 0.00 0.00 0.00 3.02
2462 2966 6.366630 CAGTGAATCGAAAACTTCCTTCTTC 58.633 40.000 0.00 0.00 0.00 2.87
2729 3233 1.610967 TGGACTGGTGCCGGTATCA 60.611 57.895 5.06 5.06 35.39 2.15
2750 3254 2.753029 GTCCAGACAGCCCAGCTT 59.247 61.111 0.00 0.00 36.40 3.74
2798 3302 5.482163 TGTACTTGTTCATGAGATCACCA 57.518 39.130 0.00 0.00 0.00 4.17
2829 3333 1.072965 CCTCATATCAACCCTCCCAGC 59.927 57.143 0.00 0.00 0.00 4.85
2895 3399 0.819259 TCAGACACCAAGTGCTTGCC 60.819 55.000 6.42 0.00 39.16 4.52
2945 3544 4.971830 GCAAAAAGGAAGCAAGAAAAATGC 59.028 37.500 0.00 0.00 44.15 3.56
3077 3794 2.850568 ACCCTCGGTTTTTGGATCCTAT 59.149 45.455 14.23 0.00 27.29 2.57
3170 3887 1.448013 GTACTTCCTGGCGTGCCTC 60.448 63.158 12.84 0.00 36.94 4.70
3374 4091 2.418368 AGTGCTCAAACAGGTTGTCA 57.582 45.000 0.00 0.00 38.47 3.58
3420 4137 1.687123 GTAGTCCATGGCGGTGTAGAT 59.313 52.381 6.96 0.00 35.57 1.98
3839 4588 6.239887 GGAGATGCCCTTAGATGGTTATACAA 60.240 42.308 0.00 0.00 0.00 2.41
3856 4605 2.203181 GGAGCTGCTGGAGATGCC 60.203 66.667 7.01 0.00 37.10 4.40
4009 4762 2.613691 CAATGCAACTTCTCCAATGGC 58.386 47.619 0.00 0.00 0.00 4.40
4025 4908 0.886490 GCCGTAGCAGATCCCCAATG 60.886 60.000 0.00 0.00 39.53 2.82
4045 4928 2.736144 TGAAAGGTGTGTAGCCGTAG 57.264 50.000 0.00 0.00 0.00 3.51
4046 4929 3.132925 GTTTGAAAGGTGTGTAGCCGTA 58.867 45.455 0.00 0.00 0.00 4.02
4047 4930 1.944709 GTTTGAAAGGTGTGTAGCCGT 59.055 47.619 0.00 0.00 0.00 5.68
4116 4999 4.553323 CATCTCCAACAGCTTTCCAAAAG 58.447 43.478 0.00 0.00 0.00 2.27
4201 8991 4.549458 CAGTGTTGCCTTTGGTAATCAAG 58.451 43.478 0.00 0.00 36.62 3.02
4202 8992 3.320541 CCAGTGTTGCCTTTGGTAATCAA 59.679 43.478 0.00 0.00 28.75 2.57
4204 8994 2.890945 ACCAGTGTTGCCTTTGGTAATC 59.109 45.455 0.00 0.00 41.92 1.75
4246 9038 1.142870 TGACTTACCAGTGCTGCCTTT 59.857 47.619 0.00 0.00 31.22 3.11
4258 9050 4.083271 GCAGTTGATTGGTCTTGACTTACC 60.083 45.833 0.61 0.00 36.24 2.85
4263 9055 1.873591 ACGCAGTTGATTGGTCTTGAC 59.126 47.619 0.00 0.00 37.78 3.18
4279 9071 3.650070 TTGATTTGGCAAACATACGCA 57.350 38.095 16.00 4.33 0.00 5.24
4289 9081 0.685660 TGGCTGCATTTGATTTGGCA 59.314 45.000 0.50 0.00 34.66 4.92
4290 9082 1.465777 GTTGGCTGCATTTGATTTGGC 59.534 47.619 0.50 0.00 0.00 4.52
4362 9154 6.280643 AGAAAAATAGTTGTTTCCAGTTGCC 58.719 36.000 0.00 0.00 34.85 4.52
4370 9162 5.470368 GGGGCAGAGAAAAATAGTTGTTTC 58.530 41.667 0.00 0.00 34.57 2.78
4396 9188 8.244494 CCATATGATATGGTTGAGTTTCTACG 57.756 38.462 20.81 0.00 34.56 3.51
4411 9203 8.007742 GTCTATGGAGGGAGTACCATATGATAT 58.992 40.741 3.65 0.00 44.64 1.63
4416 9208 4.044317 ACGTCTATGGAGGGAGTACCATAT 59.956 45.833 0.00 0.00 44.64 1.78
4419 9211 1.567649 ACGTCTATGGAGGGAGTACCA 59.432 52.381 3.73 0.00 43.89 3.25
4420 9212 2.361643 ACGTCTATGGAGGGAGTACC 57.638 55.000 3.73 0.00 40.67 3.34
4422 9214 3.449737 CCAAAACGTCTATGGAGGGAGTA 59.550 47.826 8.16 0.00 36.27 2.59
4424 9216 2.236395 ACCAAAACGTCTATGGAGGGAG 59.764 50.000 17.95 0.00 37.66 4.30
4425 9217 2.262637 ACCAAAACGTCTATGGAGGGA 58.737 47.619 17.95 0.00 37.66 4.20
4426 9218 2.781681 ACCAAAACGTCTATGGAGGG 57.218 50.000 17.95 2.24 37.66 4.30
4427 9219 3.793559 CCTACCAAAACGTCTATGGAGG 58.206 50.000 17.95 15.21 37.66 4.30
4428 9220 3.195661 GCCTACCAAAACGTCTATGGAG 58.804 50.000 17.95 11.52 37.66 3.86
4429 9221 2.093341 GGCCTACCAAAACGTCTATGGA 60.093 50.000 17.95 4.51 37.66 3.41
4430 9222 2.285977 GGCCTACCAAAACGTCTATGG 58.714 52.381 11.44 11.44 40.16 2.74
4431 9223 2.285977 GGGCCTACCAAAACGTCTATG 58.714 52.381 0.84 0.00 39.85 2.23
4432 9224 2.704464 GGGCCTACCAAAACGTCTAT 57.296 50.000 0.84 0.00 39.85 1.98
4463 9398 2.240612 GACCACTGCGATTCGTTGGC 62.241 60.000 17.88 10.53 30.51 4.52
4480 9415 5.657474 TCACTGGTATCGAATAAACTGGAC 58.343 41.667 0.00 0.00 0.00 4.02
4493 9428 1.555075 TGCTGAGGGTTCACTGGTATC 59.445 52.381 0.00 0.00 0.00 2.24
4522 9459 2.429610 CAAGCTTCATTTAGCATGGCCT 59.570 45.455 3.32 0.00 43.68 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.