Multiple sequence alignment - TraesCS5D01G131300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G131300 chr5D 100.000 3584 0 0 1 3584 208538307 208534724 0.000000e+00 6619.0
1 TraesCS5D01G131300 chr5B 92.745 2798 89 39 636 3361 222128243 222125488 0.000000e+00 3938.0
2 TraesCS5D01G131300 chr5B 88.862 413 15 10 217 621 222128677 222128288 2.500000e-131 479.0
3 TraesCS5D01G131300 chr5B 89.796 196 20 0 19 214 140947537 140947342 5.940000e-63 252.0
4 TraesCS5D01G131300 chr5B 91.772 158 9 2 8 161 31196033 31196190 2.170000e-52 217.0
5 TraesCS5D01G131300 chr5B 91.139 158 10 2 8 161 31289060 31289217 1.010000e-50 211.0
6 TraesCS5D01G131300 chr5B 89.809 157 14 2 3010 3166 221913596 221913442 2.180000e-47 200.0
7 TraesCS5D01G131300 chr5A 95.023 2170 57 19 648 2806 269321315 269319186 0.000000e+00 3362.0
8 TraesCS5D01G131300 chr5A 93.237 414 18 4 235 638 269328379 269327966 5.120000e-168 601.0
9 TraesCS5D01G131300 chr5A 94.702 302 12 4 2868 3166 269315818 269315518 1.950000e-127 466.0
10 TraesCS5D01G131300 chr5A 96.262 214 8 0 1 214 3454549 3454336 5.690000e-93 351.0
11 TraesCS5D01G131300 chr5A 80.588 170 13 6 2802 2959 269315997 269315836 2.920000e-21 113.0
12 TraesCS5D01G131300 chr4A 81.967 1037 168 12 1377 2402 501976228 501975200 0.000000e+00 861.0
13 TraesCS5D01G131300 chr4D 81.660 1036 173 10 1377 2402 89435846 89434818 0.000000e+00 845.0
14 TraesCS5D01G131300 chr4B 81.232 1039 172 14 1377 2402 126508469 126507441 0.000000e+00 817.0
15 TraesCS5D01G131300 chr4B 91.121 214 16 1 1 214 124043125 124043335 1.630000e-73 287.0
16 TraesCS5D01G131300 chr3A 94.393 214 12 0 1 214 745553863 745554076 2.670000e-86 329.0
17 TraesCS5D01G131300 chr3A 95.337 193 9 0 1 193 57912265 57912457 1.250000e-79 307.0
18 TraesCS5D01G131300 chr3B 95.055 182 6 1 1 182 449845925 449846103 2.110000e-72 283.0
19 TraesCS5D01G131300 chr3B 83.908 87 13 1 129 214 543187574 543187660 8.250000e-12 82.4
20 TraesCS5D01G131300 chr3B 81.928 83 10 3 135 214 15972529 15972609 8.310000e-07 65.8
21 TraesCS5D01G131300 chr6A 89.796 196 20 0 19 214 21655087 21654892 5.940000e-63 252.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G131300 chr5D 208534724 208538307 3583 True 6619.000000 6619 100.000000 1 3584 1 chr5D.!!$R1 3583
1 TraesCS5D01G131300 chr5B 222125488 222128677 3189 True 2208.500000 3938 90.803500 217 3361 2 chr5B.!!$R3 3144
2 TraesCS5D01G131300 chr5A 269315518 269321315 5797 True 1313.666667 3362 90.104333 648 3166 3 chr5A.!!$R3 2518
3 TraesCS5D01G131300 chr4A 501975200 501976228 1028 True 861.000000 861 81.967000 1377 2402 1 chr4A.!!$R1 1025
4 TraesCS5D01G131300 chr4D 89434818 89435846 1028 True 845.000000 845 81.660000 1377 2402 1 chr4D.!!$R1 1025
5 TraesCS5D01G131300 chr4B 126507441 126508469 1028 True 817.000000 817 81.232000 1377 2402 1 chr4B.!!$R1 1025

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
626 635 0.169009 GTTGCTCGTTGGGAATGCTC 59.831 55.0 0.0 0.0 0.0 4.26 F
1028 1080 0.121197 TCCATCCTCCCTTCCCACTT 59.879 55.0 0.0 0.0 0.0 3.16 F
1030 1082 0.179000 CATCCTCCCTTCCCACTTCG 59.821 60.0 0.0 0.0 0.0 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2175 2255 0.388134 GTGGCTTTCTCGAGCACGTA 60.388 55.000 7.81 0.00 44.49 3.57 R
2422 2502 1.755959 CCAAATTGCCCGATCAATGGA 59.244 47.619 0.00 0.00 36.83 3.41 R
2854 6131 3.254060 TCTTACAATGTCAGCGCTCTTC 58.746 45.455 7.13 0.82 0.00 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 9.019656 AGATCTATTAGCATCGATGAAACTACT 57.980 33.333 29.20 16.51 0.00 2.57
41 42 9.632807 GATCTATTAGCATCGATGAAACTACTT 57.367 33.333 29.20 12.24 0.00 2.24
42 43 9.632807 ATCTATTAGCATCGATGAAACTACTTC 57.367 33.333 29.20 7.63 34.31 3.01
43 44 6.755461 ATTAGCATCGATGAAACTACTTCG 57.245 37.500 29.20 0.00 36.78 3.79
44 45 2.860735 AGCATCGATGAAACTACTTCGC 59.139 45.455 29.20 8.66 36.78 4.70
45 46 2.860735 GCATCGATGAAACTACTTCGCT 59.139 45.455 29.20 0.00 36.78 4.93
46 47 3.307242 GCATCGATGAAACTACTTCGCTT 59.693 43.478 29.20 0.00 36.78 4.68
47 48 4.780324 GCATCGATGAAACTACTTCGCTTG 60.780 45.833 29.20 0.00 36.78 4.01
48 49 2.666508 TCGATGAAACTACTTCGCTTGC 59.333 45.455 0.00 0.00 36.78 4.01
49 50 2.668457 CGATGAAACTACTTCGCTTGCT 59.332 45.455 0.00 0.00 36.78 3.91
50 51 3.123621 CGATGAAACTACTTCGCTTGCTT 59.876 43.478 0.00 0.00 36.78 3.91
51 52 4.377431 CGATGAAACTACTTCGCTTGCTTT 60.377 41.667 0.00 0.00 36.78 3.51
52 53 4.209452 TGAAACTACTTCGCTTGCTTTG 57.791 40.909 0.00 0.00 36.78 2.77
53 54 2.688364 AACTACTTCGCTTGCTTTGC 57.312 45.000 0.00 0.00 0.00 3.68
54 55 1.884235 ACTACTTCGCTTGCTTTGCT 58.116 45.000 0.00 0.00 0.00 3.91
55 56 2.222027 ACTACTTCGCTTGCTTTGCTT 58.778 42.857 0.00 0.00 0.00 3.91
56 57 2.618709 ACTACTTCGCTTGCTTTGCTTT 59.381 40.909 0.00 0.00 0.00 3.51
57 58 3.813166 ACTACTTCGCTTGCTTTGCTTTA 59.187 39.130 0.00 0.00 0.00 1.85
58 59 3.923017 ACTTCGCTTGCTTTGCTTTAT 57.077 38.095 0.00 0.00 0.00 1.40
59 60 3.568538 ACTTCGCTTGCTTTGCTTTATG 58.431 40.909 0.00 0.00 0.00 1.90
60 61 3.253188 ACTTCGCTTGCTTTGCTTTATGA 59.747 39.130 0.00 0.00 0.00 2.15
61 62 3.913548 TCGCTTGCTTTGCTTTATGAA 57.086 38.095 0.00 0.00 0.00 2.57
62 63 4.439305 TCGCTTGCTTTGCTTTATGAAT 57.561 36.364 0.00 0.00 0.00 2.57
63 64 4.168014 TCGCTTGCTTTGCTTTATGAATG 58.832 39.130 0.00 0.00 0.00 2.67
64 65 4.082841 TCGCTTGCTTTGCTTTATGAATGA 60.083 37.500 0.00 0.00 0.00 2.57
65 66 4.622313 CGCTTGCTTTGCTTTATGAATGAA 59.378 37.500 0.00 0.00 0.00 2.57
66 67 5.443693 CGCTTGCTTTGCTTTATGAATGAAC 60.444 40.000 0.00 0.00 0.00 3.18
67 68 5.406175 GCTTGCTTTGCTTTATGAATGAACA 59.594 36.000 0.00 0.00 0.00 3.18
68 69 6.617105 GCTTGCTTTGCTTTATGAATGAACAC 60.617 38.462 0.00 0.00 0.00 3.32
69 70 6.088016 TGCTTTGCTTTATGAATGAACACT 57.912 33.333 0.00 0.00 0.00 3.55
70 71 6.151691 TGCTTTGCTTTATGAATGAACACTC 58.848 36.000 0.00 0.00 0.00 3.51
71 72 6.016024 TGCTTTGCTTTATGAATGAACACTCT 60.016 34.615 0.00 0.00 0.00 3.24
72 73 6.865205 GCTTTGCTTTATGAATGAACACTCTT 59.135 34.615 0.00 0.00 0.00 2.85
73 74 7.061557 GCTTTGCTTTATGAATGAACACTCTTC 59.938 37.037 0.00 0.00 0.00 2.87
74 75 7.750229 TTGCTTTATGAATGAACACTCTTCT 57.250 32.000 0.00 0.00 0.00 2.85
75 76 7.137490 TGCTTTATGAATGAACACTCTTCTG 57.863 36.000 0.00 0.00 0.00 3.02
76 77 6.026513 GCTTTATGAATGAACACTCTTCTGC 58.973 40.000 0.00 0.00 0.00 4.26
77 78 6.128063 GCTTTATGAATGAACACTCTTCTGCT 60.128 38.462 0.00 0.00 0.00 4.24
78 79 6.732531 TTATGAATGAACACTCTTCTGCTG 57.267 37.500 0.00 0.00 0.00 4.41
79 80 2.810274 TGAATGAACACTCTTCTGCTGC 59.190 45.455 0.00 0.00 0.00 5.25
80 81 2.556144 ATGAACACTCTTCTGCTGCA 57.444 45.000 0.88 0.88 0.00 4.41
81 82 1.875009 TGAACACTCTTCTGCTGCAG 58.125 50.000 23.31 23.31 0.00 4.41
82 83 1.139654 TGAACACTCTTCTGCTGCAGT 59.860 47.619 27.24 7.59 32.61 4.40
83 84 2.216898 GAACACTCTTCTGCTGCAGTT 58.783 47.619 27.24 14.33 32.61 3.16
84 85 1.876322 ACACTCTTCTGCTGCAGTTC 58.124 50.000 27.24 0.00 32.61 3.01
85 86 0.788995 CACTCTTCTGCTGCAGTTCG 59.211 55.000 27.24 16.82 32.61 3.95
86 87 0.676184 ACTCTTCTGCTGCAGTTCGA 59.324 50.000 27.24 19.57 32.61 3.71
87 88 1.274728 ACTCTTCTGCTGCAGTTCGAT 59.725 47.619 27.24 10.49 32.61 3.59
88 89 2.289320 ACTCTTCTGCTGCAGTTCGATT 60.289 45.455 27.24 13.89 32.61 3.34
89 90 2.341257 TCTTCTGCTGCAGTTCGATTC 58.659 47.619 27.24 0.00 32.61 2.52
90 91 2.028658 TCTTCTGCTGCAGTTCGATTCT 60.029 45.455 27.24 0.00 32.61 2.40
91 92 1.718396 TCTGCTGCAGTTCGATTCTG 58.282 50.000 27.24 12.01 36.18 3.02
92 93 1.001293 TCTGCTGCAGTTCGATTCTGT 59.999 47.619 27.24 0.00 35.60 3.41
93 94 1.128136 CTGCTGCAGTTCGATTCTGTG 59.872 52.381 21.21 11.60 35.60 3.66
94 95 1.151668 GCTGCAGTTCGATTCTGTGT 58.848 50.000 16.64 0.00 35.60 3.72
95 96 2.288763 TGCTGCAGTTCGATTCTGTGTA 60.289 45.455 16.64 8.79 35.60 2.90
96 97 2.932614 GCTGCAGTTCGATTCTGTGTAT 59.067 45.455 16.64 0.00 35.60 2.29
97 98 3.372206 GCTGCAGTTCGATTCTGTGTATT 59.628 43.478 16.64 0.00 35.60 1.89
98 99 4.566759 GCTGCAGTTCGATTCTGTGTATTA 59.433 41.667 16.64 1.42 35.60 0.98
99 100 5.235186 GCTGCAGTTCGATTCTGTGTATTAT 59.765 40.000 16.64 0.00 35.60 1.28
100 101 6.420903 GCTGCAGTTCGATTCTGTGTATTATA 59.579 38.462 16.64 0.00 35.60 0.98
101 102 7.116948 GCTGCAGTTCGATTCTGTGTATTATAT 59.883 37.037 16.64 0.00 35.60 0.86
102 103 8.887036 TGCAGTTCGATTCTGTGTATTATATT 57.113 30.769 15.93 0.00 35.60 1.28
103 104 9.325198 TGCAGTTCGATTCTGTGTATTATATTT 57.675 29.630 15.93 0.00 35.60 1.40
117 118 9.665264 GTGTATTATATTTTTAGCCACTCTTGC 57.335 33.333 0.00 0.00 0.00 4.01
118 119 9.627123 TGTATTATATTTTTAGCCACTCTTGCT 57.373 29.630 0.00 0.00 42.81 3.91
120 121 5.741388 ATATTTTTAGCCACTCTTGCTCG 57.259 39.130 0.00 0.00 40.23 5.03
121 122 2.543777 TTTTAGCCACTCTTGCTCGT 57.456 45.000 0.00 0.00 40.23 4.18
122 123 2.543777 TTTAGCCACTCTTGCTCGTT 57.456 45.000 0.00 0.00 40.23 3.85
123 124 2.543777 TTAGCCACTCTTGCTCGTTT 57.456 45.000 0.00 0.00 40.23 3.60
124 125 1.795768 TAGCCACTCTTGCTCGTTTG 58.204 50.000 0.00 0.00 40.23 2.93
125 126 0.886490 AGCCACTCTTGCTCGTTTGG 60.886 55.000 0.00 0.00 32.41 3.28
126 127 0.884704 GCCACTCTTGCTCGTTTGGA 60.885 55.000 0.00 0.00 0.00 3.53
127 128 1.813513 CCACTCTTGCTCGTTTGGAT 58.186 50.000 0.00 0.00 0.00 3.41
128 129 2.154462 CCACTCTTGCTCGTTTGGATT 58.846 47.619 0.00 0.00 0.00 3.01
129 130 2.095567 CCACTCTTGCTCGTTTGGATTG 60.096 50.000 0.00 0.00 0.00 2.67
130 131 2.549754 CACTCTTGCTCGTTTGGATTGT 59.450 45.455 0.00 0.00 0.00 2.71
131 132 2.808543 ACTCTTGCTCGTTTGGATTGTC 59.191 45.455 0.00 0.00 0.00 3.18
132 133 2.807967 CTCTTGCTCGTTTGGATTGTCA 59.192 45.455 0.00 0.00 0.00 3.58
133 134 3.210227 TCTTGCTCGTTTGGATTGTCAA 58.790 40.909 0.00 0.00 0.00 3.18
134 135 3.003275 TCTTGCTCGTTTGGATTGTCAAC 59.997 43.478 0.00 0.00 0.00 3.18
135 136 2.293170 TGCTCGTTTGGATTGTCAACA 58.707 42.857 0.00 0.00 0.00 3.33
136 137 2.032799 TGCTCGTTTGGATTGTCAACAC 59.967 45.455 0.00 0.00 0.00 3.32
137 138 2.903678 CTCGTTTGGATTGTCAACACG 58.096 47.619 0.00 0.00 35.09 4.49
138 139 2.281517 TCGTTTGGATTGTCAACACGT 58.718 42.857 0.00 0.00 35.20 4.49
139 140 2.678836 TCGTTTGGATTGTCAACACGTT 59.321 40.909 0.00 0.00 35.20 3.99
140 141 3.869832 TCGTTTGGATTGTCAACACGTTA 59.130 39.130 0.00 0.00 35.20 3.18
141 142 4.331992 TCGTTTGGATTGTCAACACGTTAA 59.668 37.500 0.00 0.00 35.20 2.01
142 143 5.007823 TCGTTTGGATTGTCAACACGTTAAT 59.992 36.000 0.00 0.00 35.20 1.40
143 144 6.202379 TCGTTTGGATTGTCAACACGTTAATA 59.798 34.615 0.00 0.00 35.20 0.98
144 145 6.851837 CGTTTGGATTGTCAACACGTTAATAA 59.148 34.615 0.00 0.00 32.33 1.40
145 146 7.059033 CGTTTGGATTGTCAACACGTTAATAAG 59.941 37.037 0.00 0.00 32.33 1.73
146 147 7.499321 TTGGATTGTCAACACGTTAATAAGT 57.501 32.000 0.00 0.00 0.00 2.24
147 148 6.893759 TGGATTGTCAACACGTTAATAAGTG 58.106 36.000 0.00 7.01 43.46 3.16
158 159 6.939627 CACGTTAATAAGTGTGTCAGTTTGA 58.060 36.000 0.00 0.00 33.97 2.69
159 160 7.572759 CACGTTAATAAGTGTGTCAGTTTGAT 58.427 34.615 0.00 0.00 33.97 2.57
160 161 8.067784 CACGTTAATAAGTGTGTCAGTTTGATT 58.932 33.333 0.00 0.00 33.97 2.57
161 162 9.263538 ACGTTAATAAGTGTGTCAGTTTGATTA 57.736 29.630 0.00 0.00 0.00 1.75
162 163 9.741168 CGTTAATAAGTGTGTCAGTTTGATTAG 57.259 33.333 0.00 0.00 0.00 1.73
165 166 5.424121 AAGTGTGTCAGTTTGATTAGTGC 57.576 39.130 0.00 0.00 0.00 4.40
166 167 3.494626 AGTGTGTCAGTTTGATTAGTGCG 59.505 43.478 0.00 0.00 0.00 5.34
167 168 2.223144 TGTGTCAGTTTGATTAGTGCGC 59.777 45.455 0.00 0.00 0.00 6.09
168 169 2.223144 GTGTCAGTTTGATTAGTGCGCA 59.777 45.455 5.66 5.66 0.00 6.09
169 170 2.223144 TGTCAGTTTGATTAGTGCGCAC 59.777 45.455 32.79 32.79 0.00 5.34
170 171 2.223144 GTCAGTTTGATTAGTGCGCACA 59.777 45.455 39.21 22.69 0.00 4.57
171 172 3.073678 TCAGTTTGATTAGTGCGCACAT 58.926 40.909 39.21 26.34 0.00 3.21
172 173 3.501828 TCAGTTTGATTAGTGCGCACATT 59.498 39.130 39.21 23.99 0.00 2.71
173 174 3.605056 CAGTTTGATTAGTGCGCACATTG 59.395 43.478 39.21 20.69 0.00 2.82
174 175 2.261037 TTGATTAGTGCGCACATTGC 57.739 45.000 39.21 25.52 40.69 3.56
175 176 0.451383 TGATTAGTGCGCACATTGCC 59.549 50.000 39.21 23.85 41.12 4.52
176 177 0.589729 GATTAGTGCGCACATTGCCG 60.590 55.000 39.21 0.00 41.12 5.69
177 178 2.597117 ATTAGTGCGCACATTGCCGC 62.597 55.000 39.21 12.88 41.12 6.53
180 181 3.130160 TGCGCACATTGCCGCATA 61.130 55.556 17.52 0.85 43.66 3.14
181 182 2.352686 GCGCACATTGCCGCATAG 60.353 61.111 14.87 0.00 41.12 2.23
182 183 2.328989 CGCACATTGCCGCATAGG 59.671 61.111 0.00 0.00 41.12 2.57
183 184 2.472059 CGCACATTGCCGCATAGGT 61.472 57.895 0.00 0.00 41.12 3.08
184 185 1.064621 GCACATTGCCGCATAGGTG 59.935 57.895 12.65 12.65 43.70 4.00
236 237 7.755582 AGCAAAAAGAAACTGTGAACATTAC 57.244 32.000 0.00 0.00 0.00 1.89
237 238 7.547227 AGCAAAAAGAAACTGTGAACATTACT 58.453 30.769 0.00 0.00 0.00 2.24
238 239 8.682710 AGCAAAAAGAAACTGTGAACATTACTA 58.317 29.630 0.00 0.00 0.00 1.82
252 253 8.006590 GTGAACATTACTAGAATGCGAATCATC 58.993 37.037 0.00 0.00 33.40 2.92
272 273 1.143620 GCCAGCTCGATCTGCTTCT 59.856 57.895 10.79 0.00 38.92 2.85
275 276 2.739932 GCCAGCTCGATCTGCTTCTAAA 60.740 50.000 10.79 0.00 38.92 1.85
322 329 3.659092 CCGGCAAGCAAGCGACAA 61.659 61.111 0.00 0.00 34.64 3.18
428 435 2.432628 CGACCTTCGCTGGTGGAC 60.433 66.667 3.93 0.00 41.00 4.02
429 436 2.741092 GACCTTCGCTGGTGGACA 59.259 61.111 3.93 0.00 41.00 4.02
430 437 1.296715 GACCTTCGCTGGTGGACAT 59.703 57.895 3.93 0.00 41.00 3.06
431 438 1.003355 ACCTTCGCTGGTGGACATG 60.003 57.895 0.00 0.00 39.17 3.21
432 439 1.746615 CCTTCGCTGGTGGACATGG 60.747 63.158 0.00 0.00 0.00 3.66
433 440 2.359850 TTCGCTGGTGGACATGGC 60.360 61.111 0.00 0.00 0.00 4.40
434 441 3.918253 TTCGCTGGTGGACATGGCC 62.918 63.158 12.04 12.04 0.00 5.36
482 489 1.518056 AACATTCCCGTGCAGTGCAG 61.518 55.000 20.42 12.53 40.08 4.41
483 490 3.058160 ATTCCCGTGCAGTGCAGC 61.058 61.111 20.42 12.53 40.08 5.25
544 551 3.303135 TGGCAGAGCGTCCGTTCT 61.303 61.111 0.00 0.00 36.11 3.01
545 552 2.507324 GGCAGAGCGTCCGTTCTC 60.507 66.667 2.95 0.00 33.44 2.87
546 553 2.507324 GCAGAGCGTCCGTTCTCC 60.507 66.667 2.95 0.00 33.44 3.71
547 554 2.182030 CAGAGCGTCCGTTCTCCC 59.818 66.667 2.95 0.00 33.44 4.30
548 555 3.069318 AGAGCGTCCGTTCTCCCC 61.069 66.667 0.00 0.00 29.71 4.81
549 556 4.493747 GAGCGTCCGTTCTCCCCG 62.494 72.222 0.00 0.00 0.00 5.73
605 614 1.137614 CTCGCGCTCACTGCTTCTA 59.862 57.895 5.56 0.00 40.11 2.10
624 633 1.154225 CGTTGCTCGTTGGGAATGC 60.154 57.895 0.00 0.00 34.52 3.56
625 634 1.577328 CGTTGCTCGTTGGGAATGCT 61.577 55.000 0.00 0.00 34.52 3.79
626 635 0.169009 GTTGCTCGTTGGGAATGCTC 59.831 55.000 0.00 0.00 0.00 4.26
628 637 0.674581 TGCTCGTTGGGAATGCTCAG 60.675 55.000 0.00 0.00 0.00 3.35
629 638 0.391661 GCTCGTTGGGAATGCTCAGA 60.392 55.000 0.00 0.00 0.00 3.27
630 639 1.945819 GCTCGTTGGGAATGCTCAGAA 60.946 52.381 0.00 0.00 0.00 3.02
632 641 3.012518 CTCGTTGGGAATGCTCAGAAAT 58.987 45.455 0.00 0.00 0.00 2.17
633 642 3.420893 TCGTTGGGAATGCTCAGAAATT 58.579 40.909 0.00 0.00 0.00 1.82
634 643 3.191162 TCGTTGGGAATGCTCAGAAATTG 59.809 43.478 0.00 0.00 0.00 2.32
642 681 2.730069 TGCTCAGAAATTGTTTGTGCG 58.270 42.857 0.00 0.00 34.25 5.34
643 682 2.357323 TGCTCAGAAATTGTTTGTGCGA 59.643 40.909 0.00 0.00 34.25 5.10
676 715 3.567164 GGTATGGACAGCAATGAGATTGG 59.433 47.826 0.00 0.00 40.57 3.16
811 854 5.740290 TTGTGGTAAAACAACCCAAAAGA 57.260 34.783 0.00 0.00 38.90 2.52
818 861 2.351706 ACAACCCAAAAGAAGGCGTA 57.648 45.000 0.00 0.00 0.00 4.42
819 862 1.951602 ACAACCCAAAAGAAGGCGTAC 59.048 47.619 0.00 0.00 0.00 3.67
820 863 1.950909 CAACCCAAAAGAAGGCGTACA 59.049 47.619 0.00 0.00 0.00 2.90
821 864 1.892209 ACCCAAAAGAAGGCGTACAG 58.108 50.000 0.00 0.00 0.00 2.74
822 865 1.142262 ACCCAAAAGAAGGCGTACAGT 59.858 47.619 0.00 0.00 0.00 3.55
845 888 3.070015 AGAAAACATCCCAGGCACAAAAG 59.930 43.478 0.00 0.00 0.00 2.27
846 889 2.380064 AACATCCCAGGCACAAAAGA 57.620 45.000 0.00 0.00 0.00 2.52
847 890 2.380064 ACATCCCAGGCACAAAAGAA 57.620 45.000 0.00 0.00 0.00 2.52
848 891 2.893424 ACATCCCAGGCACAAAAGAAT 58.107 42.857 0.00 0.00 0.00 2.40
849 892 2.564062 ACATCCCAGGCACAAAAGAATG 59.436 45.455 0.00 0.00 0.00 2.67
850 893 1.631405 TCCCAGGCACAAAAGAATGG 58.369 50.000 0.00 0.00 0.00 3.16
1028 1080 0.121197 TCCATCCTCCCTTCCCACTT 59.879 55.000 0.00 0.00 0.00 3.16
1029 1081 0.548510 CCATCCTCCCTTCCCACTTC 59.451 60.000 0.00 0.00 0.00 3.01
1030 1082 0.179000 CATCCTCCCTTCCCACTTCG 59.821 60.000 0.00 0.00 0.00 3.79
1031 1083 1.627297 ATCCTCCCTTCCCACTTCGC 61.627 60.000 0.00 0.00 0.00 4.70
1032 1084 2.294078 CCTCCCTTCCCACTTCGCT 61.294 63.158 0.00 0.00 0.00 4.93
1033 1085 1.679898 CTCCCTTCCCACTTCGCTT 59.320 57.895 0.00 0.00 0.00 4.68
1034 1086 0.391793 CTCCCTTCCCACTTCGCTTC 60.392 60.000 0.00 0.00 0.00 3.86
1040 1092 0.400213 TCCCACTTCGCTTCCATTGT 59.600 50.000 0.00 0.00 0.00 2.71
1331 1405 2.203538 CACCTGGCAGCCAACCTT 60.204 61.111 17.03 0.00 30.80 3.50
1700 1774 2.344203 CCTCTCCGTCCTGCTCGTT 61.344 63.158 0.00 0.00 0.00 3.85
1703 1777 0.965866 TCTCCGTCCTGCTCGTTGAT 60.966 55.000 0.00 0.00 0.00 2.57
1712 1786 0.943835 TGCTCGTTGATGACACCACG 60.944 55.000 0.00 0.00 33.33 4.94
2422 2502 4.104261 TGCTGATTGATTCATCCCATCTCT 59.896 41.667 0.00 0.00 32.72 3.10
2531 2611 1.154413 CGTACGTACGTGCCTTCGT 60.154 57.895 33.95 3.43 44.13 3.85
2532 2612 1.122419 CGTACGTACGTGCCTTCGTC 61.122 60.000 33.95 9.23 44.13 4.20
2533 2613 0.166814 GTACGTACGTGCCTTCGTCT 59.833 55.000 30.25 1.85 43.12 4.18
2534 2614 0.874390 TACGTACGTGCCTTCGTCTT 59.126 50.000 30.25 1.29 43.12 3.01
2535 2615 0.386478 ACGTACGTGCCTTCGTCTTC 60.386 55.000 22.14 0.00 43.12 2.87
2536 2616 0.386352 CGTACGTGCCTTCGTCTTCA 60.386 55.000 7.22 0.00 43.12 3.02
2736 2818 3.935828 GCTCACTAAGGTCAGTTTGATCC 59.064 47.826 0.00 0.00 0.00 3.36
2750 2832 3.819564 TTGATCCCTCTCATGGTTACG 57.180 47.619 0.00 0.00 0.00 3.18
2759 2841 4.396166 CCTCTCATGGTTACGAAAAATGCT 59.604 41.667 0.00 0.00 0.00 3.79
2806 2889 1.906574 GGGGGTGTGAGATTGTCTGTA 59.093 52.381 0.00 0.00 0.00 2.74
2854 6131 1.504359 TACTGCGTTCCAAAGTTCCG 58.496 50.000 0.00 0.00 0.00 4.30
2875 6265 3.254060 GAAGAGCGCTGACATTGTAAGA 58.746 45.455 18.48 0.00 0.00 2.10
2990 6380 0.953471 TTTCGTCCCATGTTCCGCAG 60.953 55.000 0.00 0.00 0.00 5.18
3010 6400 5.238583 GCAGCAAATACGTATATTCCTCCT 58.761 41.667 8.83 0.00 30.27 3.69
3012 6402 6.347725 GCAGCAAATACGTATATTCCTCCTTG 60.348 42.308 8.83 8.09 30.27 3.61
3049 6439 2.294512 CTGCTGAAAAGGGTGAAAGTCC 59.705 50.000 0.00 0.00 0.00 3.85
3050 6440 1.266989 GCTGAAAAGGGTGAAAGTCCG 59.733 52.381 0.00 0.00 0.00 4.79
3181 6573 1.608590 CAATCAACCTTCACAGCCGTT 59.391 47.619 0.00 0.00 0.00 4.44
3204 6607 6.564709 TTGATCTTGTCCAGAAAATGACTG 57.435 37.500 0.00 0.00 34.16 3.51
3207 6610 6.944290 TGATCTTGTCCAGAAAATGACTGATT 59.056 34.615 0.00 0.00 37.54 2.57
3238 6641 3.558033 AGGTTTCTTTTACCGGCTTTGA 58.442 40.909 0.00 0.00 40.69 2.69
3270 6678 3.444742 TCTCCAACAGCAGCCATATTTTG 59.555 43.478 0.00 0.00 0.00 2.44
3282 6690 2.203401 CATATTTTGGGGCAATGCACG 58.797 47.619 7.79 0.00 29.41 5.34
3290 6698 3.064324 GCAATGCACGAAGGGCCT 61.064 61.111 0.00 0.00 0.00 5.19
3362 6778 2.587522 GCCCTAAAAATAGGCTCCTGG 58.412 52.381 0.00 0.00 43.62 4.45
3363 6779 2.587522 CCCTAAAAATAGGCTCCTGGC 58.412 52.381 0.00 0.00 35.90 4.85
3364 6780 2.222027 CCTAAAAATAGGCTCCTGGCG 58.778 52.381 0.00 0.00 44.18 5.69
3365 6781 2.222027 CTAAAAATAGGCTCCTGGCGG 58.778 52.381 0.00 0.00 44.18 6.13
3366 6782 1.037579 AAAAATAGGCTCCTGGCGGC 61.038 55.000 0.00 0.00 44.18 6.53
3367 6783 2.210144 AAAATAGGCTCCTGGCGGCA 62.210 55.000 12.58 12.58 44.18 5.69
3368 6784 2.210144 AAATAGGCTCCTGGCGGCAA 62.210 55.000 14.48 0.00 44.18 4.52
3369 6785 2.210144 AATAGGCTCCTGGCGGCAAA 62.210 55.000 14.48 3.05 44.18 3.68
3370 6786 1.999634 ATAGGCTCCTGGCGGCAAAT 62.000 55.000 14.48 2.90 44.18 2.32
3371 6787 2.210144 TAGGCTCCTGGCGGCAAATT 62.210 55.000 14.48 0.00 44.18 1.82
3372 6788 2.649129 GGCTCCTGGCGGCAAATTT 61.649 57.895 14.48 0.00 42.94 1.82
3373 6789 1.446618 GCTCCTGGCGGCAAATTTG 60.447 57.895 14.48 14.03 0.00 2.32
3374 6790 1.216178 CTCCTGGCGGCAAATTTGG 59.784 57.895 19.47 10.70 0.00 3.28
3375 6791 2.229690 CTCCTGGCGGCAAATTTGGG 62.230 60.000 19.47 9.89 0.00 4.12
3376 6792 2.265424 CTGGCGGCAAATTTGGGG 59.735 61.111 19.47 0.00 0.00 4.96
3377 6793 3.956305 CTGGCGGCAAATTTGGGGC 62.956 63.158 19.47 5.41 0.00 5.80
3378 6794 4.014108 GGCGGCAAATTTGGGGCA 62.014 61.111 19.47 0.00 0.00 5.36
3379 6795 2.741985 GCGGCAAATTTGGGGCAC 60.742 61.111 19.47 2.47 0.00 5.01
3380 6796 3.059099 CGGCAAATTTGGGGCACT 58.941 55.556 19.47 0.00 0.00 4.40
3381 6797 1.370810 CGGCAAATTTGGGGCACTT 59.629 52.632 19.47 0.00 0.00 3.16
3382 6798 0.670239 CGGCAAATTTGGGGCACTTC 60.670 55.000 19.47 0.35 0.00 3.01
3383 6799 0.670239 GGCAAATTTGGGGCACTTCG 60.670 55.000 19.47 0.00 0.00 3.79
3384 6800 0.316841 GCAAATTTGGGGCACTTCGA 59.683 50.000 19.47 0.00 0.00 3.71
3385 6801 1.934849 GCAAATTTGGGGCACTTCGAC 60.935 52.381 19.47 0.00 0.00 4.20
3386 6802 0.596082 AAATTTGGGGCACTTCGACG 59.404 50.000 0.00 0.00 0.00 5.12
3387 6803 1.241315 AATTTGGGGCACTTCGACGG 61.241 55.000 0.00 0.00 0.00 4.79
3394 6810 4.680237 CACTTCGACGGCTGCCCA 62.680 66.667 14.12 0.00 0.00 5.36
3395 6811 3.936203 ACTTCGACGGCTGCCCAA 61.936 61.111 14.12 0.00 0.00 4.12
3396 6812 2.668212 CTTCGACGGCTGCCCAAA 60.668 61.111 14.12 1.45 0.00 3.28
3397 6813 2.203224 TTCGACGGCTGCCCAAAA 60.203 55.556 14.12 0.00 0.00 2.44
3398 6814 1.791103 CTTCGACGGCTGCCCAAAAA 61.791 55.000 14.12 2.18 0.00 1.94
3399 6815 1.175983 TTCGACGGCTGCCCAAAAAT 61.176 50.000 14.12 0.00 0.00 1.82
3400 6816 1.154035 CGACGGCTGCCCAAAAATC 60.154 57.895 14.12 0.69 0.00 2.17
3401 6817 1.154035 GACGGCTGCCCAAAAATCG 60.154 57.895 14.12 0.77 0.00 3.34
3402 6818 1.862602 GACGGCTGCCCAAAAATCGT 61.863 55.000 14.12 4.44 0.00 3.73
3403 6819 1.444212 CGGCTGCCCAAAAATCGTG 60.444 57.895 14.12 0.00 0.00 4.35
3404 6820 1.861542 CGGCTGCCCAAAAATCGTGA 61.862 55.000 14.12 0.00 0.00 4.35
3405 6821 0.109132 GGCTGCCCAAAAATCGTGAG 60.109 55.000 7.66 0.00 0.00 3.51
3406 6822 0.109132 GCTGCCCAAAAATCGTGAGG 60.109 55.000 0.00 0.00 0.00 3.86
3407 6823 0.109132 CTGCCCAAAAATCGTGAGGC 60.109 55.000 0.00 0.00 40.87 4.70
3408 6824 0.539438 TGCCCAAAAATCGTGAGGCT 60.539 50.000 0.00 0.00 41.08 4.58
3409 6825 0.109132 GCCCAAAAATCGTGAGGCTG 60.109 55.000 0.00 0.00 37.42 4.85
3410 6826 0.109132 CCCAAAAATCGTGAGGCTGC 60.109 55.000 0.00 0.00 0.00 5.25
3411 6827 0.883833 CCAAAAATCGTGAGGCTGCT 59.116 50.000 0.00 0.00 0.00 4.24
3412 6828 1.270550 CCAAAAATCGTGAGGCTGCTT 59.729 47.619 0.00 0.00 0.00 3.91
3413 6829 2.589014 CAAAAATCGTGAGGCTGCTTC 58.411 47.619 4.63 4.63 0.00 3.86
3414 6830 1.168714 AAAATCGTGAGGCTGCTTCC 58.831 50.000 9.40 0.18 0.00 3.46
3415 6831 1.021390 AAATCGTGAGGCTGCTTCCG 61.021 55.000 9.40 11.85 0.00 4.30
3416 6832 2.859273 AATCGTGAGGCTGCTTCCGG 62.859 60.000 17.46 0.00 0.00 5.14
3417 6833 4.069232 CGTGAGGCTGCTTCCGGA 62.069 66.667 9.40 0.00 0.00 5.14
3418 6834 2.435059 GTGAGGCTGCTTCCGGAC 60.435 66.667 1.83 0.00 0.00 4.79
3419 6835 3.706373 TGAGGCTGCTTCCGGACC 61.706 66.667 1.83 0.51 0.00 4.46
3420 6836 4.475135 GAGGCTGCTTCCGGACCC 62.475 72.222 1.83 0.00 0.00 4.46
3422 6838 4.115199 GGCTGCTTCCGGACCCAT 62.115 66.667 1.83 0.00 0.00 4.00
3423 6839 2.825836 GCTGCTTCCGGACCCATG 60.826 66.667 1.83 0.00 0.00 3.66
3424 6840 2.825836 CTGCTTCCGGACCCATGC 60.826 66.667 1.83 4.57 0.00 4.06
3425 6841 3.626996 CTGCTTCCGGACCCATGCA 62.627 63.158 1.83 9.29 0.00 3.96
3426 6842 2.124151 GCTTCCGGACCCATGCAT 60.124 61.111 1.83 0.00 0.00 3.96
3427 6843 2.484062 GCTTCCGGACCCATGCATG 61.484 63.158 20.19 20.19 0.00 4.06
3428 6844 1.077501 CTTCCGGACCCATGCATGT 60.078 57.895 24.58 7.78 0.00 3.21
3429 6845 1.378382 TTCCGGACCCATGCATGTG 60.378 57.895 24.58 16.74 0.00 3.21
3430 6846 2.829914 CCGGACCCATGCATGTGG 60.830 66.667 24.58 24.50 39.05 4.17
3431 6847 3.520862 CGGACCCATGCATGTGGC 61.521 66.667 24.58 16.49 45.13 5.01
3432 6848 3.149648 GGACCCATGCATGTGGCC 61.150 66.667 18.92 18.92 43.89 5.36
3433 6849 2.362760 GACCCATGCATGTGGCCA 60.363 61.111 24.58 0.00 43.89 5.36
3434 6850 2.363276 ACCCATGCATGTGGCCAG 60.363 61.111 24.58 8.53 43.89 4.85
3435 6851 2.043752 CCCATGCATGTGGCCAGA 60.044 61.111 24.58 4.74 43.89 3.86
3436 6852 1.683025 CCCATGCATGTGGCCAGAA 60.683 57.895 24.58 0.00 43.89 3.02
3437 6853 1.259142 CCCATGCATGTGGCCAGAAA 61.259 55.000 24.58 0.00 43.89 2.52
3438 6854 0.609151 CCATGCATGTGGCCAGAAAA 59.391 50.000 24.58 0.00 43.89 2.29
3439 6855 1.673626 CCATGCATGTGGCCAGAAAAC 60.674 52.381 24.58 0.00 43.89 2.43
3440 6856 0.609662 ATGCATGTGGCCAGAAAACC 59.390 50.000 5.11 0.00 43.89 3.27
3441 6857 1.293179 GCATGTGGCCAGAAAACCC 59.707 57.895 5.11 0.00 36.11 4.11
3442 6858 1.187567 GCATGTGGCCAGAAAACCCT 61.188 55.000 5.11 0.00 36.11 4.34
3443 6859 0.890683 CATGTGGCCAGAAAACCCTC 59.109 55.000 5.11 0.00 0.00 4.30
3444 6860 0.609131 ATGTGGCCAGAAAACCCTCG 60.609 55.000 5.11 0.00 0.00 4.63
3445 6861 1.971695 GTGGCCAGAAAACCCTCGG 60.972 63.158 5.11 0.00 0.00 4.63
3446 6862 2.150719 TGGCCAGAAAACCCTCGGA 61.151 57.895 0.00 0.00 0.00 4.55
3447 6863 1.303282 GGCCAGAAAACCCTCGGAT 59.697 57.895 0.00 0.00 0.00 4.18
3448 6864 0.748367 GGCCAGAAAACCCTCGGATC 60.748 60.000 0.00 0.00 0.00 3.36
3449 6865 0.748367 GCCAGAAAACCCTCGGATCC 60.748 60.000 0.00 0.00 0.00 3.36
3450 6866 0.462047 CCAGAAAACCCTCGGATCCG 60.462 60.000 28.62 28.62 41.35 4.18
3451 6867 1.090052 CAGAAAACCCTCGGATCCGC 61.090 60.000 29.62 12.50 39.59 5.54
3452 6868 1.818363 GAAAACCCTCGGATCCGCC 60.818 63.158 29.62 6.58 39.59 6.13
3486 6902 4.883354 CCATGGCCGGCTCCTTCC 62.883 72.222 28.56 9.02 0.00 3.46
3487 6903 4.113815 CATGGCCGGCTCCTTCCA 62.114 66.667 28.56 15.32 0.00 3.53
3488 6904 4.115199 ATGGCCGGCTCCTTCCAC 62.115 66.667 28.56 7.32 0.00 4.02
3510 6926 3.991051 CGCCGACCCCGATATGCT 61.991 66.667 0.00 0.00 38.22 3.79
3511 6927 2.048127 GCCGACCCCGATATGCTC 60.048 66.667 0.00 0.00 38.22 4.26
3513 6929 2.430921 CGACCCCGATATGCTCGC 60.431 66.667 0.00 0.00 46.25 5.03
3514 6930 2.048127 GACCCCGATATGCTCGCC 60.048 66.667 0.00 0.00 46.25 5.54
3515 6931 2.842462 ACCCCGATATGCTCGCCA 60.842 61.111 0.00 0.00 46.25 5.69
3516 6932 2.357517 CCCCGATATGCTCGCCAC 60.358 66.667 0.00 0.00 46.25 5.01
3517 6933 2.357517 CCCGATATGCTCGCCACC 60.358 66.667 0.00 0.00 46.25 4.61
3518 6934 2.734723 CCGATATGCTCGCCACCG 60.735 66.667 0.00 0.00 46.25 4.94
3519 6935 3.406361 CGATATGCTCGCCACCGC 61.406 66.667 0.00 0.00 41.14 5.68
3520 6936 2.029666 GATATGCTCGCCACCGCT 59.970 61.111 0.00 0.00 0.00 5.52
3521 6937 2.024319 GATATGCTCGCCACCGCTC 61.024 63.158 0.00 0.00 0.00 5.03
3522 6938 2.427540 GATATGCTCGCCACCGCTCT 62.428 60.000 0.00 0.00 0.00 4.09
3523 6939 2.427540 ATATGCTCGCCACCGCTCTC 62.428 60.000 0.00 0.00 0.00 3.20
3526 6942 4.838486 CTCGCCACCGCTCTCGAC 62.838 72.222 0.00 0.00 38.10 4.20
3529 6945 3.138798 GCCACCGCTCTCGACCTA 61.139 66.667 0.00 0.00 38.10 3.08
3530 6946 2.491022 GCCACCGCTCTCGACCTAT 61.491 63.158 0.00 0.00 38.10 2.57
3531 6947 1.170919 GCCACCGCTCTCGACCTATA 61.171 60.000 0.00 0.00 38.10 1.31
3532 6948 1.535833 CCACCGCTCTCGACCTATAT 58.464 55.000 0.00 0.00 38.10 0.86
3533 6949 1.887198 CCACCGCTCTCGACCTATATT 59.113 52.381 0.00 0.00 38.10 1.28
3534 6950 3.079578 CCACCGCTCTCGACCTATATTA 58.920 50.000 0.00 0.00 38.10 0.98
3535 6951 3.127203 CCACCGCTCTCGACCTATATTAG 59.873 52.174 0.00 0.00 38.10 1.73
3547 6963 3.679389 CCTATATTAGGGCAGCTGTTGG 58.321 50.000 16.64 0.00 42.42 3.77
3548 6964 3.327757 CCTATATTAGGGCAGCTGTTGGA 59.672 47.826 16.64 0.00 42.42 3.53
3549 6965 3.498774 ATATTAGGGCAGCTGTTGGAG 57.501 47.619 16.64 0.00 0.00 3.86
3562 6978 4.261578 CTGTTGGAGCAAATTTGGATGT 57.738 40.909 19.47 0.00 0.00 3.06
3563 6979 3.991773 CTGTTGGAGCAAATTTGGATGTG 59.008 43.478 19.47 0.00 0.00 3.21
3564 6980 3.387374 TGTTGGAGCAAATTTGGATGTGT 59.613 39.130 19.47 0.00 0.00 3.72
3565 6981 4.586421 TGTTGGAGCAAATTTGGATGTGTA 59.414 37.500 19.47 0.00 0.00 2.90
3566 6982 5.245751 TGTTGGAGCAAATTTGGATGTGTAT 59.754 36.000 19.47 0.00 0.00 2.29
3567 6983 5.999205 TGGAGCAAATTTGGATGTGTATT 57.001 34.783 19.47 0.00 0.00 1.89
3568 6984 6.357579 TGGAGCAAATTTGGATGTGTATTT 57.642 33.333 19.47 0.00 0.00 1.40
3569 6985 7.473735 TGGAGCAAATTTGGATGTGTATTTA 57.526 32.000 19.47 0.00 0.00 1.40
3570 6986 7.546358 TGGAGCAAATTTGGATGTGTATTTAG 58.454 34.615 19.47 0.00 0.00 1.85
3571 6987 7.395772 TGGAGCAAATTTGGATGTGTATTTAGA 59.604 33.333 19.47 0.00 0.00 2.10
3572 6988 7.702348 GGAGCAAATTTGGATGTGTATTTAGAC 59.298 37.037 19.47 0.00 0.00 2.59
3573 6989 8.121305 AGCAAATTTGGATGTGTATTTAGACA 57.879 30.769 19.47 0.00 33.81 3.41
3574 6990 8.584157 AGCAAATTTGGATGTGTATTTAGACAA 58.416 29.630 19.47 0.00 32.98 3.18
3575 6991 9.369904 GCAAATTTGGATGTGTATTTAGACAAT 57.630 29.630 19.47 0.00 32.98 2.71
3577 6993 9.874205 AAATTTGGATGTGTATTTAGACAATGG 57.126 29.630 0.00 0.00 32.98 3.16
3578 6994 7.403312 TTTGGATGTGTATTTAGACAATGGG 57.597 36.000 0.00 0.00 32.98 4.00
3579 6995 6.073447 TGGATGTGTATTTAGACAATGGGT 57.927 37.500 0.00 0.00 32.98 4.51
3580 6996 5.885352 TGGATGTGTATTTAGACAATGGGTG 59.115 40.000 0.00 0.00 32.98 4.61
3581 6997 5.221048 GGATGTGTATTTAGACAATGGGTGC 60.221 44.000 0.00 0.00 32.98 5.01
3582 6998 4.657013 TGTGTATTTAGACAATGGGTGCA 58.343 39.130 0.00 0.00 0.00 4.57
3583 6999 5.260424 TGTGTATTTAGACAATGGGTGCAT 58.740 37.500 0.00 0.00 0.00 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 9.019656 AGTAGTTTCATCGATGCTAATAGATCT 57.980 33.333 20.81 11.38 0.00 2.75
15 16 9.632807 AAGTAGTTTCATCGATGCTAATAGATC 57.367 33.333 20.81 5.32 0.00 2.75
16 17 9.632807 GAAGTAGTTTCATCGATGCTAATAGAT 57.367 33.333 20.81 4.04 35.78 1.98
17 18 7.803659 CGAAGTAGTTTCATCGATGCTAATAGA 59.196 37.037 20.81 0.00 37.48 1.98
18 19 7.409874 GCGAAGTAGTTTCATCGATGCTAATAG 60.410 40.741 20.81 12.90 37.48 1.73
19 20 6.362551 GCGAAGTAGTTTCATCGATGCTAATA 59.637 38.462 20.81 10.92 37.48 0.98
20 21 5.175856 GCGAAGTAGTTTCATCGATGCTAAT 59.824 40.000 20.81 12.27 37.48 1.73
21 22 4.503007 GCGAAGTAGTTTCATCGATGCTAA 59.497 41.667 20.81 13.65 37.48 3.09
22 23 4.042398 GCGAAGTAGTTTCATCGATGCTA 58.958 43.478 20.81 13.04 37.48 3.49
23 24 2.860735 GCGAAGTAGTTTCATCGATGCT 59.139 45.455 20.81 14.04 37.48 3.79
24 25 2.860735 AGCGAAGTAGTTTCATCGATGC 59.139 45.455 20.81 6.96 37.48 3.91
25 26 4.780324 GCAAGCGAAGTAGTTTCATCGATG 60.780 45.833 19.61 19.61 37.48 3.84
26 27 3.307242 GCAAGCGAAGTAGTTTCATCGAT 59.693 43.478 0.00 0.00 37.48 3.59
27 28 2.666508 GCAAGCGAAGTAGTTTCATCGA 59.333 45.455 0.00 0.00 37.48 3.59
28 29 2.668457 AGCAAGCGAAGTAGTTTCATCG 59.332 45.455 0.00 0.00 35.43 3.84
29 30 4.670227 AAGCAAGCGAAGTAGTTTCATC 57.330 40.909 0.00 0.00 35.43 2.92
30 31 4.787598 CAAAGCAAGCGAAGTAGTTTCAT 58.212 39.130 0.00 0.00 35.43 2.57
31 32 3.548014 GCAAAGCAAGCGAAGTAGTTTCA 60.548 43.478 0.00 0.00 35.43 2.69
32 33 2.973879 GCAAAGCAAGCGAAGTAGTTTC 59.026 45.455 0.00 0.00 0.00 2.78
33 34 2.618709 AGCAAAGCAAGCGAAGTAGTTT 59.381 40.909 0.00 0.00 37.01 2.66
34 35 2.222027 AGCAAAGCAAGCGAAGTAGTT 58.778 42.857 0.00 0.00 37.01 2.24
35 36 1.884235 AGCAAAGCAAGCGAAGTAGT 58.116 45.000 0.00 0.00 37.01 2.73
36 37 2.977405 AAGCAAAGCAAGCGAAGTAG 57.023 45.000 0.00 0.00 37.01 2.57
37 38 4.454161 TCATAAAGCAAAGCAAGCGAAGTA 59.546 37.500 0.00 0.00 37.01 2.24
38 39 3.253188 TCATAAAGCAAAGCAAGCGAAGT 59.747 39.130 0.00 0.00 37.01 3.01
39 40 3.825308 TCATAAAGCAAAGCAAGCGAAG 58.175 40.909 0.00 0.00 37.01 3.79
40 41 3.913548 TCATAAAGCAAAGCAAGCGAA 57.086 38.095 0.00 0.00 37.01 4.70
41 42 3.913548 TTCATAAAGCAAAGCAAGCGA 57.086 38.095 0.00 0.00 37.01 4.93
42 43 4.168014 TCATTCATAAAGCAAAGCAAGCG 58.832 39.130 0.00 0.00 37.01 4.68
43 44 5.406175 TGTTCATTCATAAAGCAAAGCAAGC 59.594 36.000 0.00 0.00 0.00 4.01
44 45 6.643770 AGTGTTCATTCATAAAGCAAAGCAAG 59.356 34.615 0.00 0.00 0.00 4.01
45 46 6.514947 AGTGTTCATTCATAAAGCAAAGCAA 58.485 32.000 0.00 0.00 0.00 3.91
46 47 6.016024 AGAGTGTTCATTCATAAAGCAAAGCA 60.016 34.615 0.00 0.00 0.00 3.91
47 48 6.385033 AGAGTGTTCATTCATAAAGCAAAGC 58.615 36.000 0.00 0.00 0.00 3.51
48 49 8.295288 AGAAGAGTGTTCATTCATAAAGCAAAG 58.705 33.333 2.50 0.00 0.00 2.77
49 50 8.077991 CAGAAGAGTGTTCATTCATAAAGCAAA 58.922 33.333 2.50 0.00 0.00 3.68
50 51 7.587629 CAGAAGAGTGTTCATTCATAAAGCAA 58.412 34.615 2.50 0.00 0.00 3.91
51 52 6.348786 GCAGAAGAGTGTTCATTCATAAAGCA 60.349 38.462 2.50 0.00 0.00 3.91
52 53 6.026513 GCAGAAGAGTGTTCATTCATAAAGC 58.973 40.000 2.50 0.00 0.00 3.51
53 54 7.242079 CAGCAGAAGAGTGTTCATTCATAAAG 58.758 38.462 2.50 0.00 0.00 1.85
54 55 6.348786 GCAGCAGAAGAGTGTTCATTCATAAA 60.349 38.462 2.50 0.00 0.00 1.40
55 56 5.122869 GCAGCAGAAGAGTGTTCATTCATAA 59.877 40.000 2.50 0.00 0.00 1.90
56 57 4.633126 GCAGCAGAAGAGTGTTCATTCATA 59.367 41.667 2.50 0.00 0.00 2.15
57 58 3.439476 GCAGCAGAAGAGTGTTCATTCAT 59.561 43.478 2.50 0.00 0.00 2.57
58 59 2.810274 GCAGCAGAAGAGTGTTCATTCA 59.190 45.455 2.50 0.00 0.00 2.57
59 60 2.810274 TGCAGCAGAAGAGTGTTCATTC 59.190 45.455 2.50 0.00 0.00 2.67
60 61 2.812591 CTGCAGCAGAAGAGTGTTCATT 59.187 45.455 18.42 0.00 32.44 2.57
61 62 2.224475 ACTGCAGCAGAAGAGTGTTCAT 60.224 45.455 29.70 0.00 35.18 2.57
62 63 1.139654 ACTGCAGCAGAAGAGTGTTCA 59.860 47.619 29.70 0.00 35.18 3.18
63 64 1.876322 ACTGCAGCAGAAGAGTGTTC 58.124 50.000 29.70 0.00 35.18 3.18
64 65 2.216898 GAACTGCAGCAGAAGAGTGTT 58.783 47.619 29.70 11.51 35.18 3.32
65 66 1.871408 CGAACTGCAGCAGAAGAGTGT 60.871 52.381 29.70 1.92 35.18 3.55
66 67 0.788995 CGAACTGCAGCAGAAGAGTG 59.211 55.000 29.70 8.24 35.18 3.51
67 68 0.676184 TCGAACTGCAGCAGAAGAGT 59.324 50.000 29.70 3.59 35.18 3.24
68 69 2.007360 ATCGAACTGCAGCAGAAGAG 57.993 50.000 29.70 15.87 35.18 2.85
69 70 2.028658 AGAATCGAACTGCAGCAGAAGA 60.029 45.455 29.70 22.12 35.18 2.87
70 71 2.093941 CAGAATCGAACTGCAGCAGAAG 59.906 50.000 29.70 17.91 35.18 2.85
71 72 2.071540 CAGAATCGAACTGCAGCAGAA 58.928 47.619 29.70 11.26 35.18 3.02
72 73 1.001293 ACAGAATCGAACTGCAGCAGA 59.999 47.619 29.70 11.25 38.74 4.26
73 74 1.128136 CACAGAATCGAACTGCAGCAG 59.872 52.381 21.54 21.54 38.74 4.24
74 75 1.150827 CACAGAATCGAACTGCAGCA 58.849 50.000 15.27 0.00 38.74 4.41
75 76 1.151668 ACACAGAATCGAACTGCAGC 58.848 50.000 15.27 0.00 38.74 5.25
76 77 6.834959 ATAATACACAGAATCGAACTGCAG 57.165 37.500 13.48 13.48 38.74 4.41
77 78 8.887036 AATATAATACACAGAATCGAACTGCA 57.113 30.769 18.46 8.25 38.74 4.41
91 92 9.665264 GCAAGAGTGGCTAAAAATATAATACAC 57.335 33.333 0.00 0.00 0.00 2.90
92 93 9.627123 AGCAAGAGTGGCTAAAAATATAATACA 57.373 29.630 0.00 0.00 40.47 2.29
94 95 8.988934 CGAGCAAGAGTGGCTAAAAATATAATA 58.011 33.333 0.00 0.00 42.78 0.98
95 96 7.499232 ACGAGCAAGAGTGGCTAAAAATATAAT 59.501 33.333 0.00 0.00 42.78 1.28
96 97 6.821665 ACGAGCAAGAGTGGCTAAAAATATAA 59.178 34.615 0.00 0.00 42.78 0.98
97 98 6.346096 ACGAGCAAGAGTGGCTAAAAATATA 58.654 36.000 0.00 0.00 42.78 0.86
98 99 5.186198 ACGAGCAAGAGTGGCTAAAAATAT 58.814 37.500 0.00 0.00 42.78 1.28
99 100 4.575885 ACGAGCAAGAGTGGCTAAAAATA 58.424 39.130 0.00 0.00 42.78 1.40
100 101 3.412386 ACGAGCAAGAGTGGCTAAAAAT 58.588 40.909 0.00 0.00 42.78 1.82
101 102 2.846193 ACGAGCAAGAGTGGCTAAAAA 58.154 42.857 0.00 0.00 42.78 1.94
102 103 2.543777 ACGAGCAAGAGTGGCTAAAA 57.456 45.000 0.00 0.00 42.78 1.52
103 104 2.543777 AACGAGCAAGAGTGGCTAAA 57.456 45.000 0.00 0.00 42.78 1.85
104 105 2.143122 CAAACGAGCAAGAGTGGCTAA 58.857 47.619 0.00 0.00 42.78 3.09
105 106 1.608025 CCAAACGAGCAAGAGTGGCTA 60.608 52.381 0.00 0.00 42.78 3.93
106 107 0.886490 CCAAACGAGCAAGAGTGGCT 60.886 55.000 0.00 0.00 46.07 4.75
107 108 0.884704 TCCAAACGAGCAAGAGTGGC 60.885 55.000 0.00 0.00 0.00 5.01
108 109 1.813513 ATCCAAACGAGCAAGAGTGG 58.186 50.000 0.00 0.00 0.00 4.00
109 110 2.549754 ACAATCCAAACGAGCAAGAGTG 59.450 45.455 0.00 0.00 0.00 3.51
110 111 2.808543 GACAATCCAAACGAGCAAGAGT 59.191 45.455 0.00 0.00 0.00 3.24
111 112 2.807967 TGACAATCCAAACGAGCAAGAG 59.192 45.455 0.00 0.00 0.00 2.85
112 113 2.844946 TGACAATCCAAACGAGCAAGA 58.155 42.857 0.00 0.00 0.00 3.02
113 114 3.243035 TGTTGACAATCCAAACGAGCAAG 60.243 43.478 0.00 0.00 0.00 4.01
114 115 2.685388 TGTTGACAATCCAAACGAGCAA 59.315 40.909 0.00 0.00 0.00 3.91
115 116 2.032799 GTGTTGACAATCCAAACGAGCA 59.967 45.455 0.00 0.00 0.00 4.26
116 117 2.650608 GTGTTGACAATCCAAACGAGC 58.349 47.619 0.00 0.00 0.00 5.03
117 118 2.286833 ACGTGTTGACAATCCAAACGAG 59.713 45.455 13.51 0.00 35.83 4.18
118 119 2.281517 ACGTGTTGACAATCCAAACGA 58.718 42.857 13.51 0.00 35.83 3.85
119 120 2.748461 ACGTGTTGACAATCCAAACG 57.252 45.000 0.00 0.00 37.00 3.60
120 121 7.858879 ACTTATTAACGTGTTGACAATCCAAAC 59.141 33.333 0.00 0.00 0.00 2.93
121 122 7.858382 CACTTATTAACGTGTTGACAATCCAAA 59.142 33.333 0.00 0.00 0.00 3.28
122 123 7.012515 ACACTTATTAACGTGTTGACAATCCAA 59.987 33.333 0.00 0.00 41.24 3.53
123 124 6.483974 ACACTTATTAACGTGTTGACAATCCA 59.516 34.615 0.00 0.00 41.24 3.41
124 125 6.795114 CACACTTATTAACGTGTTGACAATCC 59.205 38.462 0.00 0.00 42.05 3.01
125 126 7.349711 ACACACTTATTAACGTGTTGACAATC 58.650 34.615 0.00 0.00 42.05 2.67
126 127 7.011576 TGACACACTTATTAACGTGTTGACAAT 59.988 33.333 0.00 0.00 42.42 2.71
127 128 6.313164 TGACACACTTATTAACGTGTTGACAA 59.687 34.615 0.00 0.00 42.42 3.18
128 129 5.811100 TGACACACTTATTAACGTGTTGACA 59.189 36.000 0.00 5.37 42.42 3.58
129 130 6.019318 ACTGACACACTTATTAACGTGTTGAC 60.019 38.462 0.00 3.60 42.42 3.18
130 131 6.044046 ACTGACACACTTATTAACGTGTTGA 58.956 36.000 0.00 0.00 42.42 3.18
131 132 6.281848 ACTGACACACTTATTAACGTGTTG 57.718 37.500 0.00 7.18 42.42 3.33
132 133 6.913873 AACTGACACACTTATTAACGTGTT 57.086 33.333 0.00 0.00 42.42 3.32
133 134 6.535865 TCAAACTGACACACTTATTAACGTGT 59.464 34.615 6.59 6.59 44.91 4.49
134 135 6.939627 TCAAACTGACACACTTATTAACGTG 58.060 36.000 0.00 0.00 37.18 4.49
135 136 7.724305 ATCAAACTGACACACTTATTAACGT 57.276 32.000 0.00 0.00 0.00 3.99
136 137 9.741168 CTAATCAAACTGACACACTTATTAACG 57.259 33.333 0.00 0.00 0.00 3.18
139 140 8.717821 GCACTAATCAAACTGACACACTTATTA 58.282 33.333 0.00 0.00 0.00 0.98
140 141 7.571244 CGCACTAATCAAACTGACACACTTATT 60.571 37.037 0.00 0.00 0.00 1.40
141 142 6.128553 CGCACTAATCAAACTGACACACTTAT 60.129 38.462 0.00 0.00 0.00 1.73
142 143 5.176774 CGCACTAATCAAACTGACACACTTA 59.823 40.000 0.00 0.00 0.00 2.24
143 144 4.024893 CGCACTAATCAAACTGACACACTT 60.025 41.667 0.00 0.00 0.00 3.16
144 145 3.494626 CGCACTAATCAAACTGACACACT 59.505 43.478 0.00 0.00 0.00 3.55
145 146 3.799035 CGCACTAATCAAACTGACACAC 58.201 45.455 0.00 0.00 0.00 3.82
146 147 2.223144 GCGCACTAATCAAACTGACACA 59.777 45.455 0.30 0.00 0.00 3.72
147 148 2.223144 TGCGCACTAATCAAACTGACAC 59.777 45.455 5.66 0.00 0.00 3.67
148 149 2.223144 GTGCGCACTAATCAAACTGACA 59.777 45.455 32.55 0.00 0.00 3.58
149 150 2.223144 TGTGCGCACTAATCAAACTGAC 59.777 45.455 37.59 9.94 0.00 3.51
150 151 2.488952 TGTGCGCACTAATCAAACTGA 58.511 42.857 37.59 13.20 0.00 3.41
151 152 2.967459 TGTGCGCACTAATCAAACTG 57.033 45.000 37.59 0.00 0.00 3.16
152 153 3.825308 CAATGTGCGCACTAATCAAACT 58.175 40.909 37.59 5.96 0.00 2.66
153 154 2.342354 GCAATGTGCGCACTAATCAAAC 59.658 45.455 37.59 16.93 31.71 2.93
154 155 2.594321 GCAATGTGCGCACTAATCAAA 58.406 42.857 37.59 18.89 31.71 2.69
155 156 1.135431 GGCAATGTGCGCACTAATCAA 60.135 47.619 37.59 19.65 46.21 2.57
156 157 0.451383 GGCAATGTGCGCACTAATCA 59.549 50.000 37.59 20.46 46.21 2.57
157 158 0.589729 CGGCAATGTGCGCACTAATC 60.590 55.000 37.59 23.88 46.21 1.75
158 159 1.429021 CGGCAATGTGCGCACTAAT 59.571 52.632 37.59 23.21 46.21 1.73
159 160 2.866750 CGGCAATGTGCGCACTAA 59.133 55.556 37.59 21.95 46.21 2.24
160 161 3.798650 GCGGCAATGTGCGCACTA 61.799 61.111 37.59 25.26 46.21 2.74
164 165 2.352686 CTATGCGGCAATGTGCGC 60.353 61.111 6.82 0.00 46.21 6.09
165 166 2.328989 CCTATGCGGCAATGTGCG 59.671 61.111 6.82 0.00 46.21 5.34
166 167 1.064621 CACCTATGCGGCAATGTGC 59.935 57.895 6.82 0.00 44.08 4.57
167 168 1.729276 CCACCTATGCGGCAATGTG 59.271 57.895 6.82 14.05 35.61 3.21
168 169 4.240881 CCACCTATGCGGCAATGT 57.759 55.556 6.82 1.27 35.61 2.71
199 200 3.918253 TTTGCTAGTGGCTGGGGCG 62.918 63.158 0.00 0.00 42.39 6.13
200 201 1.184970 TTTTTGCTAGTGGCTGGGGC 61.185 55.000 0.00 0.00 42.39 5.80
201 202 0.890683 CTTTTTGCTAGTGGCTGGGG 59.109 55.000 0.00 0.00 42.39 4.96
202 203 1.909700 TCTTTTTGCTAGTGGCTGGG 58.090 50.000 0.00 0.00 42.39 4.45
203 204 3.319122 AGTTTCTTTTTGCTAGTGGCTGG 59.681 43.478 0.00 0.00 42.39 4.85
204 205 4.202050 ACAGTTTCTTTTTGCTAGTGGCTG 60.202 41.667 0.00 0.00 42.39 4.85
205 206 3.954258 ACAGTTTCTTTTTGCTAGTGGCT 59.046 39.130 0.00 0.00 42.39 4.75
206 207 4.044426 CACAGTTTCTTTTTGCTAGTGGC 58.956 43.478 0.00 0.00 42.22 5.01
207 208 5.499139 TCACAGTTTCTTTTTGCTAGTGG 57.501 39.130 0.00 0.00 0.00 4.00
208 209 6.321717 TGTTCACAGTTTCTTTTTGCTAGTG 58.678 36.000 0.00 0.00 0.00 2.74
209 210 6.509418 TGTTCACAGTTTCTTTTTGCTAGT 57.491 33.333 0.00 0.00 0.00 2.57
210 211 7.992180 AATGTTCACAGTTTCTTTTTGCTAG 57.008 32.000 0.00 0.00 0.00 3.42
211 212 8.682710 AGTAATGTTCACAGTTTCTTTTTGCTA 58.317 29.630 0.00 0.00 0.00 3.49
212 213 7.547227 AGTAATGTTCACAGTTTCTTTTTGCT 58.453 30.769 0.00 0.00 0.00 3.91
213 214 7.755582 AGTAATGTTCACAGTTTCTTTTTGC 57.244 32.000 0.00 0.00 0.00 3.68
236 237 3.396560 TGGCAGATGATTCGCATTCTAG 58.603 45.455 0.00 0.00 37.34 2.43
237 238 3.396560 CTGGCAGATGATTCGCATTCTA 58.603 45.455 9.42 0.00 37.34 2.10
238 239 2.219458 CTGGCAGATGATTCGCATTCT 58.781 47.619 9.42 0.00 37.34 2.40
243 244 1.829349 CGAGCTGGCAGATGATTCGC 61.829 60.000 20.86 0.00 0.00 4.70
252 253 1.152989 GAAGCAGATCGAGCTGGCAG 61.153 60.000 30.05 10.94 42.53 4.85
275 276 3.443588 GGTGACGCCAGCCTTTTT 58.556 55.556 0.00 0.00 37.17 1.94
321 328 3.660865 GACAGTTATGTCGGTTGGAGTT 58.339 45.455 0.00 0.00 46.01 3.01
322 329 3.314541 GACAGTTATGTCGGTTGGAGT 57.685 47.619 0.00 0.00 46.01 3.85
411 418 2.432628 GTCCACCAGCGAAGGTCG 60.433 66.667 0.00 0.00 40.77 4.79
417 424 4.408821 GGCCATGTCCACCAGCGA 62.409 66.667 0.00 0.00 0.00 4.93
426 433 4.740822 AAGCACCCCGGCCATGTC 62.741 66.667 2.24 0.00 0.00 3.06
621 630 3.004629 TCGCACAAACAATTTCTGAGCAT 59.995 39.130 0.00 0.00 0.00 3.79
622 631 2.357323 TCGCACAAACAATTTCTGAGCA 59.643 40.909 0.00 0.00 0.00 4.26
623 632 2.998772 TCGCACAAACAATTTCTGAGC 58.001 42.857 0.00 0.00 0.00 4.26
624 633 3.423206 GCTTCGCACAAACAATTTCTGAG 59.577 43.478 0.00 0.00 0.00 3.35
625 634 3.066621 AGCTTCGCACAAACAATTTCTGA 59.933 39.130 0.00 0.00 0.00 3.27
626 635 3.180980 CAGCTTCGCACAAACAATTTCTG 59.819 43.478 0.00 0.00 0.00 3.02
628 637 3.371168 TCAGCTTCGCACAAACAATTTC 58.629 40.909 0.00 0.00 0.00 2.17
629 638 3.181487 ACTCAGCTTCGCACAAACAATTT 60.181 39.130 0.00 0.00 0.00 1.82
630 639 2.358898 ACTCAGCTTCGCACAAACAATT 59.641 40.909 0.00 0.00 0.00 2.32
632 641 1.378531 ACTCAGCTTCGCACAAACAA 58.621 45.000 0.00 0.00 0.00 2.83
633 642 2.232756 TACTCAGCTTCGCACAAACA 57.767 45.000 0.00 0.00 0.00 2.83
634 643 2.159653 CCATACTCAGCTTCGCACAAAC 60.160 50.000 0.00 0.00 0.00 2.93
642 681 4.626042 CTGTCCATACCATACTCAGCTTC 58.374 47.826 0.00 0.00 0.00 3.86
643 682 3.181461 GCTGTCCATACCATACTCAGCTT 60.181 47.826 0.00 0.00 42.00 3.74
646 685 4.406648 TTGCTGTCCATACCATACTCAG 57.593 45.455 0.00 0.00 0.00 3.35
676 715 0.179163 GCAGTTAAGCAACGGGATGC 60.179 55.000 2.31 2.31 46.78 3.91
701 740 3.766068 TTGGATTTCCATGCTTTGCAA 57.234 38.095 0.00 0.00 46.97 4.08
702 741 3.766068 TTTGGATTTCCATGCTTTGCA 57.234 38.095 0.00 0.00 46.97 4.08
711 750 2.259012 AGCATGGCTTTTGGATTTCCA 58.741 42.857 0.00 0.00 39.28 3.53
722 761 2.230992 TCGCATGTTTTTAGCATGGCTT 59.769 40.909 0.00 0.00 42.72 4.35
766 805 3.389002 AGTCCTTACCGGTGTTAGTGTTT 59.611 43.478 19.93 0.00 0.00 2.83
772 811 3.494749 CCACAAAGTCCTTACCGGTGTTA 60.495 47.826 19.93 1.00 0.00 2.41
773 812 2.567985 CACAAAGTCCTTACCGGTGTT 58.432 47.619 19.93 0.00 0.00 3.32
774 813 1.202722 CCACAAAGTCCTTACCGGTGT 60.203 52.381 19.93 0.00 0.00 4.16
775 814 1.202722 ACCACAAAGTCCTTACCGGTG 60.203 52.381 19.93 0.00 0.00 4.94
776 815 1.134228 ACCACAAAGTCCTTACCGGT 58.866 50.000 13.98 13.98 0.00 5.28
777 816 3.405823 TTACCACAAAGTCCTTACCGG 57.594 47.619 0.00 0.00 0.00 5.28
811 854 4.251268 GGATGTTTTCTACTGTACGCCTT 58.749 43.478 0.00 0.00 0.00 4.35
818 861 2.375174 TGCCTGGGATGTTTTCTACTGT 59.625 45.455 0.00 0.00 0.00 3.55
819 862 2.749621 GTGCCTGGGATGTTTTCTACTG 59.250 50.000 0.00 0.00 0.00 2.74
820 863 2.375174 TGTGCCTGGGATGTTTTCTACT 59.625 45.455 0.00 0.00 0.00 2.57
821 864 2.790433 TGTGCCTGGGATGTTTTCTAC 58.210 47.619 0.00 0.00 0.00 2.59
822 865 3.517296 TTGTGCCTGGGATGTTTTCTA 57.483 42.857 0.00 0.00 0.00 2.10
850 893 6.434340 CACTTATTTATAGGCTGGGGAATTCC 59.566 42.308 16.74 16.74 0.00 3.01
1028 1080 2.083774 GGAATGTGACAATGGAAGCGA 58.916 47.619 0.00 0.00 0.00 4.93
1029 1081 1.133025 GGGAATGTGACAATGGAAGCG 59.867 52.381 0.00 0.00 0.00 4.68
1030 1082 1.478105 GGGGAATGTGACAATGGAAGC 59.522 52.381 0.00 0.00 0.00 3.86
1031 1083 2.806434 TGGGGAATGTGACAATGGAAG 58.194 47.619 0.00 0.00 0.00 3.46
1032 1084 2.988636 TGGGGAATGTGACAATGGAA 57.011 45.000 0.00 0.00 0.00 3.53
1033 1085 3.364549 GAATGGGGAATGTGACAATGGA 58.635 45.455 0.00 0.00 0.00 3.41
1034 1086 2.431782 GGAATGGGGAATGTGACAATGG 59.568 50.000 0.00 0.00 0.00 3.16
1040 1092 2.359143 GGAATGGGAATGGGGAATGTGA 60.359 50.000 0.00 0.00 0.00 3.58
2175 2255 0.388134 GTGGCTTTCTCGAGCACGTA 60.388 55.000 7.81 0.00 44.49 3.57
2422 2502 1.755959 CCAAATTGCCCGATCAATGGA 59.244 47.619 0.00 0.00 36.83 3.41
2531 2611 7.257790 TCCTTCCTTTACATGAAGATGAAGA 57.742 36.000 0.00 0.00 40.30 2.87
2532 2612 7.066766 CCTTCCTTCCTTTACATGAAGATGAAG 59.933 40.741 0.00 5.95 40.30 3.02
2533 2613 6.886459 CCTTCCTTCCTTTACATGAAGATGAA 59.114 38.462 0.00 0.00 40.30 2.57
2534 2614 6.418101 CCTTCCTTCCTTTACATGAAGATGA 58.582 40.000 0.00 0.00 40.30 2.92
2535 2615 5.591877 CCCTTCCTTCCTTTACATGAAGATG 59.408 44.000 0.00 0.00 40.30 2.90
2536 2616 5.340360 CCCCTTCCTTCCTTTACATGAAGAT 60.340 44.000 0.00 0.00 40.30 2.40
2728 2810 3.871594 CGTAACCATGAGAGGGATCAAAC 59.128 47.826 0.00 0.00 31.76 2.93
2736 2818 4.396166 AGCATTTTTCGTAACCATGAGAGG 59.604 41.667 0.00 0.00 0.00 3.69
2759 2841 7.032377 TGTGCATGTGTAATTACAGAACAAA 57.968 32.000 18.56 12.07 36.78 2.83
2854 6131 3.254060 TCTTACAATGTCAGCGCTCTTC 58.746 45.455 7.13 0.82 0.00 2.87
2875 6265 4.672587 ACATGTATATGCACGACTTCCT 57.327 40.909 0.00 0.00 37.85 3.36
2990 6380 5.701290 AGCAAGGAGGAATATACGTATTTGC 59.299 40.000 21.30 21.30 31.44 3.68
3181 6573 6.298361 TCAGTCATTTTCTGGACAAGATCAA 58.702 36.000 0.00 0.00 36.50 2.57
3207 6610 7.482474 CCGGTAAAAGAAACCTAAGTCAAAAA 58.518 34.615 0.00 0.00 34.66 1.94
3212 6615 4.321718 AGCCGGTAAAAGAAACCTAAGTC 58.678 43.478 1.90 0.00 34.66 3.01
3227 6630 1.277842 TGCTCAAGATCAAAGCCGGTA 59.722 47.619 1.90 0.00 35.12 4.02
3231 6634 2.617774 GGAGATGCTCAAGATCAAAGCC 59.382 50.000 10.37 0.00 35.12 4.35
3238 6641 2.026542 TGCTGTTGGAGATGCTCAAGAT 60.027 45.455 0.00 0.00 31.08 2.40
3270 6678 3.451894 CCCTTCGTGCATTGCCCC 61.452 66.667 6.12 0.00 0.00 5.80
3277 6685 3.423344 TTTTTAGGCCCTTCGTGCA 57.577 47.368 0.00 0.00 0.00 4.57
3361 6777 4.014108 TGCCCCAAATTTGCCGCC 62.014 61.111 19.20 7.13 0.00 6.13
3362 6778 2.730066 AAGTGCCCCAAATTTGCCGC 62.730 55.000 12.92 15.11 0.00 6.53
3363 6779 0.670239 GAAGTGCCCCAAATTTGCCG 60.670 55.000 12.92 5.60 0.00 5.69
3364 6780 0.670239 CGAAGTGCCCCAAATTTGCC 60.670 55.000 12.92 4.01 0.00 4.52
3365 6781 0.316841 TCGAAGTGCCCCAAATTTGC 59.683 50.000 12.92 2.29 0.00 3.68
3366 6782 1.665735 CGTCGAAGTGCCCCAAATTTG 60.666 52.381 11.40 11.40 0.00 2.32
3367 6783 0.596082 CGTCGAAGTGCCCCAAATTT 59.404 50.000 0.00 0.00 0.00 1.82
3368 6784 1.241315 CCGTCGAAGTGCCCCAAATT 61.241 55.000 0.00 0.00 0.00 1.82
3369 6785 1.674322 CCGTCGAAGTGCCCCAAAT 60.674 57.895 0.00 0.00 0.00 2.32
3370 6786 2.281208 CCGTCGAAGTGCCCCAAA 60.281 61.111 0.00 0.00 0.00 3.28
3377 6793 4.680237 TGGGCAGCCGTCGAAGTG 62.680 66.667 5.00 0.00 0.00 3.16
3378 6794 2.951475 TTTTGGGCAGCCGTCGAAGT 62.951 55.000 5.00 0.00 0.00 3.01
3379 6795 1.791103 TTTTTGGGCAGCCGTCGAAG 61.791 55.000 5.00 0.00 0.00 3.79
3380 6796 1.175983 ATTTTTGGGCAGCCGTCGAA 61.176 50.000 5.00 0.00 0.00 3.71
3381 6797 1.582610 GATTTTTGGGCAGCCGTCGA 61.583 55.000 5.00 0.00 0.00 4.20
3382 6798 1.154035 GATTTTTGGGCAGCCGTCG 60.154 57.895 5.00 0.00 0.00 5.12
3383 6799 1.154035 CGATTTTTGGGCAGCCGTC 60.154 57.895 5.00 0.00 0.00 4.79
3384 6800 1.901464 ACGATTTTTGGGCAGCCGT 60.901 52.632 5.00 0.00 0.00 5.68
3385 6801 1.444212 CACGATTTTTGGGCAGCCG 60.444 57.895 5.00 0.00 0.00 5.52
3386 6802 0.109132 CTCACGATTTTTGGGCAGCC 60.109 55.000 1.26 1.26 0.00 4.85
3387 6803 0.109132 CCTCACGATTTTTGGGCAGC 60.109 55.000 0.00 0.00 0.00 5.25
3388 6804 0.109132 GCCTCACGATTTTTGGGCAG 60.109 55.000 0.00 0.00 39.38 4.85
3389 6805 0.539438 AGCCTCACGATTTTTGGGCA 60.539 50.000 0.00 0.00 41.71 5.36
3390 6806 0.109132 CAGCCTCACGATTTTTGGGC 60.109 55.000 0.00 0.00 39.82 5.36
3391 6807 0.109132 GCAGCCTCACGATTTTTGGG 60.109 55.000 0.00 0.00 0.00 4.12
3392 6808 0.883833 AGCAGCCTCACGATTTTTGG 59.116 50.000 0.00 0.00 0.00 3.28
3393 6809 2.589014 GAAGCAGCCTCACGATTTTTG 58.411 47.619 0.00 0.00 0.00 2.44
3394 6810 1.541588 GGAAGCAGCCTCACGATTTTT 59.458 47.619 0.00 0.00 0.00 1.94
3395 6811 1.168714 GGAAGCAGCCTCACGATTTT 58.831 50.000 0.00 0.00 0.00 1.82
3396 6812 1.021390 CGGAAGCAGCCTCACGATTT 61.021 55.000 0.00 0.00 0.00 2.17
3397 6813 1.448540 CGGAAGCAGCCTCACGATT 60.449 57.895 0.00 0.00 0.00 3.34
3398 6814 2.185350 CGGAAGCAGCCTCACGAT 59.815 61.111 0.00 0.00 0.00 3.73
3399 6815 4.069232 CCGGAAGCAGCCTCACGA 62.069 66.667 0.00 0.00 0.00 4.35
3400 6816 4.069232 TCCGGAAGCAGCCTCACG 62.069 66.667 0.00 0.00 0.00 4.35
3401 6817 2.435059 GTCCGGAAGCAGCCTCAC 60.435 66.667 5.23 0.00 0.00 3.51
3402 6818 3.706373 GGTCCGGAAGCAGCCTCA 61.706 66.667 5.23 0.00 0.00 3.86
3403 6819 4.475135 GGGTCCGGAAGCAGCCTC 62.475 72.222 5.23 0.00 0.00 4.70
3405 6821 4.115199 ATGGGTCCGGAAGCAGCC 62.115 66.667 5.23 3.39 0.00 4.85
3406 6822 2.825836 CATGGGTCCGGAAGCAGC 60.826 66.667 5.23 0.00 0.00 5.25
3407 6823 2.825836 GCATGGGTCCGGAAGCAG 60.826 66.667 5.23 0.00 0.00 4.24
3408 6824 2.982643 ATGCATGGGTCCGGAAGCA 61.983 57.895 5.23 12.46 36.34 3.91
3409 6825 2.124151 ATGCATGGGTCCGGAAGC 60.124 61.111 5.23 6.43 0.00 3.86
3410 6826 1.077501 ACATGCATGGGTCCGGAAG 60.078 57.895 29.41 1.63 0.00 3.46
3411 6827 1.378382 CACATGCATGGGTCCGGAA 60.378 57.895 29.41 0.00 0.00 4.30
3412 6828 2.271821 CACATGCATGGGTCCGGA 59.728 61.111 29.41 0.00 0.00 5.14
3413 6829 2.829914 CCACATGCATGGGTCCGG 60.830 66.667 29.41 17.04 35.95 5.14
3414 6830 3.520862 GCCACATGCATGGGTCCG 61.521 66.667 29.41 14.81 40.43 4.79
3415 6831 3.149648 GGCCACATGCATGGGTCC 61.150 66.667 29.41 22.66 43.89 4.46
3416 6832 2.362760 TGGCCACATGCATGGGTC 60.363 61.111 29.41 26.31 43.89 4.46
3417 6833 2.363276 CTGGCCACATGCATGGGT 60.363 61.111 29.41 7.86 43.89 4.51
3418 6834 1.259142 TTTCTGGCCACATGCATGGG 61.259 55.000 29.41 26.21 43.89 4.00
3419 6835 0.609151 TTTTCTGGCCACATGCATGG 59.391 50.000 29.41 16.62 43.89 3.66
3420 6836 1.673626 GGTTTTCTGGCCACATGCATG 60.674 52.381 25.09 25.09 43.89 4.06
3421 6837 0.609662 GGTTTTCTGGCCACATGCAT 59.390 50.000 0.00 0.00 43.89 3.96
3422 6838 1.470996 GGGTTTTCTGGCCACATGCA 61.471 55.000 0.00 0.00 43.89 3.96
3423 6839 1.187567 AGGGTTTTCTGGCCACATGC 61.188 55.000 0.00 0.00 40.16 4.06
3424 6840 0.890683 GAGGGTTTTCTGGCCACATG 59.109 55.000 0.00 0.00 0.00 3.21
3425 6841 0.609131 CGAGGGTTTTCTGGCCACAT 60.609 55.000 0.00 0.00 0.00 3.21
3426 6842 1.228124 CGAGGGTTTTCTGGCCACA 60.228 57.895 0.00 0.00 0.00 4.17
3427 6843 1.971695 CCGAGGGTTTTCTGGCCAC 60.972 63.158 0.00 0.00 0.00 5.01
3428 6844 1.497309 ATCCGAGGGTTTTCTGGCCA 61.497 55.000 4.71 4.71 0.00 5.36
3429 6845 0.748367 GATCCGAGGGTTTTCTGGCC 60.748 60.000 0.00 0.00 0.00 5.36
3430 6846 0.748367 GGATCCGAGGGTTTTCTGGC 60.748 60.000 0.00 0.00 0.00 4.85
3431 6847 0.462047 CGGATCCGAGGGTTTTCTGG 60.462 60.000 30.62 0.00 42.83 3.86
3432 6848 1.090052 GCGGATCCGAGGGTTTTCTG 61.090 60.000 37.64 4.30 42.83 3.02
3433 6849 1.221021 GCGGATCCGAGGGTTTTCT 59.779 57.895 37.64 0.00 42.83 2.52
3434 6850 1.818363 GGCGGATCCGAGGGTTTTC 60.818 63.158 37.64 16.48 42.83 2.29
3435 6851 2.271173 GGCGGATCCGAGGGTTTT 59.729 61.111 37.64 0.00 42.83 2.43
3469 6885 4.883354 GGAAGGAGCCGGCCATGG 62.883 72.222 26.15 7.63 0.00 3.66
3470 6886 4.113815 TGGAAGGAGCCGGCCATG 62.114 66.667 26.15 0.00 0.00 3.66
3471 6887 4.115199 GTGGAAGGAGCCGGCCAT 62.115 66.667 26.15 9.90 32.26 4.40
3493 6909 3.916392 GAGCATATCGGGGTCGGCG 62.916 68.421 0.00 0.00 36.95 6.46
3494 6910 2.048127 GAGCATATCGGGGTCGGC 60.048 66.667 0.00 0.00 36.95 5.54
3503 6919 2.024319 GAGCGGTGGCGAGCATATC 61.024 63.158 0.00 0.00 46.35 1.63
3504 6920 2.029666 GAGCGGTGGCGAGCATAT 59.970 61.111 0.00 0.00 46.35 1.78
3505 6921 3.138930 GAGAGCGGTGGCGAGCATA 62.139 63.158 0.00 0.00 46.35 3.14
3506 6922 4.521062 GAGAGCGGTGGCGAGCAT 62.521 66.667 0.00 0.00 46.35 3.79
3509 6925 4.838486 GTCGAGAGCGGTGGCGAG 62.838 72.222 8.42 0.00 46.35 5.03
3512 6928 1.170919 TATAGGTCGAGAGCGGTGGC 61.171 60.000 0.00 0.00 38.28 5.01
3513 6929 1.535833 ATATAGGTCGAGAGCGGTGG 58.464 55.000 0.00 0.00 38.28 4.61
3514 6930 3.127203 CCTAATATAGGTCGAGAGCGGTG 59.873 52.174 0.00 0.00 41.18 4.94
3515 6931 3.345414 CCTAATATAGGTCGAGAGCGGT 58.655 50.000 0.00 0.00 41.18 5.68
3516 6932 2.683867 CCCTAATATAGGTCGAGAGCGG 59.316 54.545 2.93 0.00 44.73 5.52
3517 6933 2.097791 GCCCTAATATAGGTCGAGAGCG 59.902 54.545 2.93 0.00 44.73 5.03
3518 6934 3.090037 TGCCCTAATATAGGTCGAGAGC 58.910 50.000 2.93 0.00 44.73 4.09
3519 6935 3.129638 GCTGCCCTAATATAGGTCGAGAG 59.870 52.174 2.93 0.00 44.73 3.20
3520 6936 3.090037 GCTGCCCTAATATAGGTCGAGA 58.910 50.000 2.93 0.00 44.73 4.04
3521 6937 3.093057 AGCTGCCCTAATATAGGTCGAG 58.907 50.000 0.00 0.00 44.73 4.04
3522 6938 2.826128 CAGCTGCCCTAATATAGGTCGA 59.174 50.000 0.00 0.00 44.73 4.20
3523 6939 2.563179 ACAGCTGCCCTAATATAGGTCG 59.437 50.000 15.27 0.00 44.73 4.79
3524 6940 4.319177 CAACAGCTGCCCTAATATAGGTC 58.681 47.826 15.27 0.00 44.73 3.85
3525 6941 3.073062 CCAACAGCTGCCCTAATATAGGT 59.927 47.826 15.27 0.00 44.73 3.08
3526 6942 3.327757 TCCAACAGCTGCCCTAATATAGG 59.672 47.826 15.27 1.16 45.81 2.57
3527 6943 4.573900 CTCCAACAGCTGCCCTAATATAG 58.426 47.826 15.27 0.00 0.00 1.31
3528 6944 3.244561 GCTCCAACAGCTGCCCTAATATA 60.245 47.826 15.27 0.00 45.83 0.86
3529 6945 2.487986 GCTCCAACAGCTGCCCTAATAT 60.488 50.000 15.27 0.00 45.83 1.28
3530 6946 1.134098 GCTCCAACAGCTGCCCTAATA 60.134 52.381 15.27 0.00 45.83 0.98
3531 6947 0.394899 GCTCCAACAGCTGCCCTAAT 60.395 55.000 15.27 0.00 45.83 1.73
3532 6948 1.002134 GCTCCAACAGCTGCCCTAA 60.002 57.895 15.27 0.00 45.83 2.69
3533 6949 2.671070 GCTCCAACAGCTGCCCTA 59.329 61.111 15.27 0.00 45.83 3.53
3541 6957 3.991773 CACATCCAAATTTGCTCCAACAG 59.008 43.478 12.92 0.00 0.00 3.16
3542 6958 3.387374 ACACATCCAAATTTGCTCCAACA 59.613 39.130 12.92 0.00 0.00 3.33
3543 6959 3.993920 ACACATCCAAATTTGCTCCAAC 58.006 40.909 12.92 0.00 0.00 3.77
3544 6960 5.999205 ATACACATCCAAATTTGCTCCAA 57.001 34.783 12.92 0.00 0.00 3.53
3545 6961 5.999205 AATACACATCCAAATTTGCTCCA 57.001 34.783 12.92 0.00 0.00 3.86
3546 6962 7.702348 GTCTAAATACACATCCAAATTTGCTCC 59.298 37.037 12.92 0.00 0.00 4.70
3547 6963 8.243426 TGTCTAAATACACATCCAAATTTGCTC 58.757 33.333 12.92 0.00 0.00 4.26
3548 6964 8.121305 TGTCTAAATACACATCCAAATTTGCT 57.879 30.769 12.92 0.00 0.00 3.91
3549 6965 8.755696 TTGTCTAAATACACATCCAAATTTGC 57.244 30.769 12.92 0.00 0.00 3.68
3551 6967 9.874205 CCATTGTCTAAATACACATCCAAATTT 57.126 29.630 0.00 0.00 0.00 1.82
3552 6968 8.477256 CCCATTGTCTAAATACACATCCAAATT 58.523 33.333 0.00 0.00 0.00 1.82
3553 6969 7.619302 ACCCATTGTCTAAATACACATCCAAAT 59.381 33.333 0.00 0.00 0.00 2.32
3554 6970 6.951198 ACCCATTGTCTAAATACACATCCAAA 59.049 34.615 0.00 0.00 0.00 3.28
3555 6971 6.376864 CACCCATTGTCTAAATACACATCCAA 59.623 38.462 0.00 0.00 0.00 3.53
3556 6972 5.885352 CACCCATTGTCTAAATACACATCCA 59.115 40.000 0.00 0.00 0.00 3.41
3557 6973 5.221048 GCACCCATTGTCTAAATACACATCC 60.221 44.000 0.00 0.00 0.00 3.51
3558 6974 5.356751 TGCACCCATTGTCTAAATACACATC 59.643 40.000 0.00 0.00 0.00 3.06
3559 6975 5.260424 TGCACCCATTGTCTAAATACACAT 58.740 37.500 0.00 0.00 0.00 3.21
3560 6976 4.657013 TGCACCCATTGTCTAAATACACA 58.343 39.130 0.00 0.00 0.00 3.72
3561 6977 5.835113 ATGCACCCATTGTCTAAATACAC 57.165 39.130 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.