Multiple sequence alignment - TraesCS5D01G129800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G129800 chr5D 100.000 8407 0 0 1 8407 204319177 204327583 0.000000e+00 15525.0
1 TraesCS5D01G129800 chr5D 97.552 286 6 1 8123 8407 204345456 204345741 9.810000e-134 488.0
2 TraesCS5D01G129800 chr5D 95.789 285 11 1 8123 8407 17824612 17824895 7.690000e-125 459.0
3 TraesCS5D01G129800 chr5D 83.051 177 23 7 7801 7971 469054955 469054780 4.060000e-33 154.0
4 TraesCS5D01G129800 chr5D 90.722 97 8 1 5510 5605 204324622 204324718 2.460000e-25 128.0
5 TraesCS5D01G129800 chr5D 90.722 97 8 1 5446 5542 204324686 204324781 2.460000e-25 128.0
6 TraesCS5D01G129800 chr5D 94.340 53 3 0 2859 2911 204321978 204322030 1.940000e-11 82.4
7 TraesCS5D01G129800 chr5D 94.340 53 3 0 2802 2854 204322035 204322087 1.940000e-11 82.4
8 TraesCS5D01G129800 chr5B 97.533 5919 102 17 770 6666 208520015 208525911 0.000000e+00 10081.0
9 TraesCS5D01G129800 chr5B 94.299 1263 33 10 6666 7910 208525939 208527180 0.000000e+00 1897.0
10 TraesCS5D01G129800 chr5B 91.551 651 37 7 1 633 208518998 208519648 0.000000e+00 881.0
11 TraesCS5D01G129800 chr5B 90.698 215 19 1 7907 8120 208528802 208529016 1.380000e-72 285.0
12 TraesCS5D01G129800 chr5B 93.642 173 10 1 5266 5438 490757577 490757406 3.010000e-64 257.0
13 TraesCS5D01G129800 chr5B 90.419 167 14 1 4050 4214 299602383 299602217 1.420000e-52 219.0
14 TraesCS5D01G129800 chr5B 92.248 129 9 1 5446 5574 208524720 208524847 1.860000e-41 182.0
15 TraesCS5D01G129800 chr5B 79.679 187 24 5 7807 7980 64410817 64410632 1.150000e-23 122.0
16 TraesCS5D01G129800 chr5B 88.660 97 10 1 5446 5542 208524752 208524847 5.330000e-22 117.0
17 TraesCS5D01G129800 chr5B 94.340 53 3 0 2802 2854 208522103 208522155 1.940000e-11 82.4
18 TraesCS5D01G129800 chr5A 96.476 3320 70 18 770 4078 239526559 239529842 0.000000e+00 5439.0
19 TraesCS5D01G129800 chr5A 97.147 2594 61 7 4077 6666 239529935 239532519 0.000000e+00 4368.0
20 TraesCS5D01G129800 chr5A 92.651 1007 49 13 6666 7658 239532553 239533548 0.000000e+00 1426.0
21 TraesCS5D01G129800 chr5A 94.619 446 21 3 117 560 239523875 239524319 0.000000e+00 688.0
22 TraesCS5D01G129800 chr5A 94.611 167 9 0 5268 5434 320214241 320214407 8.370000e-65 259.0
23 TraesCS5D01G129800 chr5A 94.574 129 6 1 5478 5605 239531300 239531428 1.850000e-46 198.0
24 TraesCS5D01G129800 chr5A 95.902 122 4 1 1 121 239477446 239477567 6.660000e-46 196.0
25 TraesCS5D01G129800 chr5A 91.346 104 7 1 7646 7749 239544880 239544981 3.160000e-29 141.0
26 TraesCS5D01G129800 chr5A 92.784 97 6 1 5510 5605 239531300 239531396 1.140000e-28 139.0
27 TraesCS5D01G129800 chr5A 93.182 88 4 2 547 633 239525264 239525350 2.460000e-25 128.0
28 TraesCS5D01G129800 chr5A 90.722 97 8 1 5446 5542 239531364 239531459 2.460000e-25 128.0
29 TraesCS5D01G129800 chr5A 94.340 53 3 0 2802 2854 239528632 239528684 1.940000e-11 82.4
30 TraesCS5D01G129800 chr7D 83.083 733 96 17 24 743 503843763 503844480 7.110000e-180 641.0
31 TraesCS5D01G129800 chr7D 97.203 286 7 1 8122 8407 386974579 386974295 4.560000e-132 483.0
32 TraesCS5D01G129800 chr7D 97.193 285 7 1 8123 8407 386963934 386963651 1.640000e-131 481.0
33 TraesCS5D01G129800 chr7D 84.028 144 22 1 7580 7722 168047800 168047657 4.090000e-28 137.0
34 TraesCS5D01G129800 chr3D 85.455 495 66 5 15 505 403329358 403328866 2.090000e-140 510.0
35 TraesCS5D01G129800 chr3D 89.595 173 14 3 4046 4214 322435280 322435452 5.110000e-52 217.0
36 TraesCS5D01G129800 chr3D 83.333 144 21 3 7578 7720 537850505 537850364 6.850000e-26 130.0
37 TraesCS5D01G129800 chr3D 76.863 255 36 16 7738 7971 147457647 147457395 1.150000e-23 122.0
38 TraesCS5D01G129800 chr3D 83.810 105 14 3 7620 7722 362204492 362204389 6.950000e-16 97.1
39 TraesCS5D01G129800 chr6D 96.842 285 8 1 8123 8407 378490691 378490408 7.640000e-130 475.0
40 TraesCS5D01G129800 chr6D 92.994 157 8 2 4058 4211 410398431 410398275 8.490000e-55 226.0
41 TraesCS5D01G129800 chr2D 96.842 285 8 1 8123 8407 599462601 599462318 7.640000e-130 475.0
42 TraesCS5D01G129800 chr2D 95.789 285 12 0 8123 8407 599473164 599472880 2.140000e-125 460.0
43 TraesCS5D01G129800 chr2D 95.679 162 7 0 5271 5432 362930808 362930969 2.330000e-65 261.0
44 TraesCS5D01G129800 chr2D 94.578 166 9 0 5271 5436 520539243 520539408 3.010000e-64 257.0
45 TraesCS5D01G129800 chr2D 79.608 255 29 17 7736 7971 514951178 514950928 2.430000e-35 161.0
46 TraesCS5D01G129800 chr2D 76.952 269 36 15 7724 7971 518152684 518152947 6.850000e-26 130.0
47 TraesCS5D01G129800 chr2D 79.137 139 26 3 7574 7711 518160799 518160935 8.990000e-15 93.5
48 TraesCS5D01G129800 chr2D 77.333 150 28 6 7578 7722 600398540 600398688 5.410000e-12 84.2
49 TraesCS5D01G129800 chr4D 96.491 285 10 0 8123 8407 63010619 63010903 9.880000e-129 472.0
50 TraesCS5D01G129800 chr4D 96.154 286 11 0 8122 8407 63000114 63000399 1.280000e-127 468.0
51 TraesCS5D01G129800 chr4D 78.418 746 127 25 4232 4949 87719479 87718740 9.950000e-124 455.0
52 TraesCS5D01G129800 chr4D 94.611 167 8 1 5266 5432 334164387 334164552 3.010000e-64 257.0
53 TraesCS5D01G129800 chr4D 87.050 139 11 6 7838 7970 101682260 101682123 5.260000e-32 150.0
54 TraesCS5D01G129800 chr3B 83.600 500 65 11 11 502 529724572 529724082 3.580000e-123 453.0
55 TraesCS5D01G129800 chr3B 89.595 173 14 3 4046 4214 396271867 396272039 5.110000e-52 217.0
56 TraesCS5D01G129800 chr3B 76.056 213 33 6 7527 7722 204767929 204767718 2.500000e-15 95.3
57 TraesCS5D01G129800 chr6B 86.098 410 43 10 5726 6129 131888216 131888617 6.030000e-116 429.0
58 TraesCS5D01G129800 chr6B 82.775 418 50 15 5719 6132 131889911 131890310 3.730000e-93 353.0
59 TraesCS5D01G129800 chr6B 82.000 150 23 4 7574 7722 453928936 453929082 3.190000e-24 124.0
60 TraesCS5D01G129800 chrUn 85.359 362 50 3 23 383 9993711 9994070 1.030000e-98 372.0
61 TraesCS5D01G129800 chr1D 95.152 165 8 0 5271 5435 463381905 463382069 2.330000e-65 261.0
62 TraesCS5D01G129800 chr4A 93.143 175 10 2 5262 5435 97530163 97529990 1.080000e-63 255.0
63 TraesCS5D01G129800 chr7B 85.306 245 28 2 1 245 532118865 532119101 6.520000e-61 246.0
64 TraesCS5D01G129800 chr7B 81.081 185 21 7 7801 7971 545981170 545980986 1.470000e-27 135.0
65 TraesCS5D01G129800 chr2A 89.444 180 15 3 4058 4234 79316005 79316183 3.050000e-54 224.0
66 TraesCS5D01G129800 chr2A 82.963 135 17 6 7842 7971 658911714 658911581 5.330000e-22 117.0
67 TraesCS5D01G129800 chr7A 92.405 158 9 3 4054 4208 579808370 579808527 1.100000e-53 222.0
68 TraesCS5D01G129800 chr7A 82.192 146 25 1 7578 7722 169651796 169651941 3.190000e-24 124.0
69 TraesCS5D01G129800 chr3A 90.588 170 11 4 4052 4217 383691090 383690922 3.950000e-53 220.0
70 TraesCS5D01G129800 chr2B 79.051 253 33 14 7736 7971 606617650 606617401 1.130000e-33 156.0
71 TraesCS5D01G129800 chr6A 82.171 129 15 4 7850 7971 201376807 201376680 4.150000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G129800 chr5D 204319177 204327583 8406 False 15525.0 15525 100.000000 1 8407 1 chr5D.!!$F2 8406
1 TraesCS5D01G129800 chr5B 208518998 208529016 10018 False 1932.2 10081 92.761286 1 8120 7 chr5B.!!$F1 8119
2 TraesCS5D01G129800 chr5A 239523875 239533548 9673 False 1399.6 5439 94.055000 117 7658 9 chr5A.!!$F4 7541
3 TraesCS5D01G129800 chr7D 503843763 503844480 717 False 641.0 641 83.083000 24 743 1 chr7D.!!$F1 719
4 TraesCS5D01G129800 chr4D 87718740 87719479 739 True 455.0 455 78.418000 4232 4949 1 chr4D.!!$R1 717
5 TraesCS5D01G129800 chr6B 131888216 131890310 2094 False 391.0 429 84.436500 5719 6132 2 chr6B.!!$F2 413

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
319 335 0.375106 CCTTCTTTTCCATCGCTCGC 59.625 55.000 0.00 0.0 0.00 5.03 F
928 3268 1.472376 GCGGAGAAGTGAGGAGATTGG 60.472 57.143 0.00 0.0 0.00 3.16 F
1385 3732 1.449778 GCCCCAAACTAGCGGAGTC 60.450 63.158 0.00 0.0 37.44 3.36 F
2446 4795 3.230134 TGCACTGCAGGTAATCCTTTTT 58.770 40.909 19.93 0.0 43.07 1.94 F
2562 4911 4.780554 TGGTCACTGGTCCACTTTATATCA 59.219 41.667 0.00 0.0 0.00 2.15 F
3596 5953 7.023575 AGATAAGCAACAAATACTTTTCAGCG 58.976 34.615 0.00 0.0 0.00 5.18 F
4466 6927 1.073763 ACACTTATGGCTGCTGTTGGA 59.926 47.619 0.00 0.0 0.00 3.53 F
4610 7071 1.133598 GATCGTGTCCGTGATGGTGTA 59.866 52.381 0.00 0.0 39.52 2.90 F
6321 8947 2.426522 GTGGTAGCAGCACAGAATGAA 58.573 47.619 11.81 0.0 45.26 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1311 3658 0.674895 ATGTGTCTTCAAGGCGAGGC 60.675 55.000 0.00 0.00 0.00 4.70 R
2482 4831 1.880027 ACCGCATGAAGAGACCAAAAC 59.120 47.619 0.00 0.00 0.00 2.43 R
2791 5140 4.766375 TCTATGAAATTTCGGTCCTCACC 58.234 43.478 13.34 0.00 39.69 4.02 R
3596 5953 1.098050 CTTGGGGTGTGCTAGCAATC 58.902 55.000 21.29 14.92 0.00 2.67 R
4117 6569 7.151999 TGAGTGAACAAACACACTAAAATGT 57.848 32.000 0.00 0.00 45.54 2.71 R
5261 7746 2.097825 GCGGAGGGAGTAAGTTGTAGA 58.902 52.381 0.00 0.00 0.00 2.59 R
6321 8947 0.681175 GCAATGCCCACCTTTCAAGT 59.319 50.000 0.00 0.00 0.00 3.16 R
6493 9119 8.682710 GCATTTAAATACATACACTGGGAGAAA 58.317 33.333 0.00 0.00 0.00 2.52 R
7953 12257 0.035881 CTTGCCTCAAGACCAGCTCA 59.964 55.000 0.50 0.00 43.42 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 2.746904 TCTATTGTTGTCATTGGCCACG 59.253 45.455 3.88 0.00 0.00 4.94
319 335 0.375106 CCTTCTTTTCCATCGCTCGC 59.625 55.000 0.00 0.00 0.00 5.03
334 350 2.214181 CTCGCCGGTCACTAGCTTGT 62.214 60.000 1.90 0.00 0.00 3.16
392 408 3.195471 AGCGCCTCTTTTATCTTACCC 57.805 47.619 2.29 0.00 0.00 3.69
512 534 2.166459 TCTTCGATGTAGTCCCTTGCAG 59.834 50.000 0.00 0.00 0.00 4.41
638 1631 9.904198 TGATTCATCATCAAACTTATCCAGTTA 57.096 29.630 0.00 0.00 45.77 2.24
641 1634 8.908786 TCATCATCAAACTTATCCAGTTATCC 57.091 34.615 0.00 0.00 45.77 2.59
642 1635 8.717717 TCATCATCAAACTTATCCAGTTATCCT 58.282 33.333 0.00 0.00 45.77 3.24
643 1636 8.997323 CATCATCAAACTTATCCAGTTATCCTC 58.003 37.037 0.00 0.00 45.77 3.71
644 1637 8.089625 TCATCAAACTTATCCAGTTATCCTCA 57.910 34.615 0.00 0.00 45.77 3.86
645 1638 8.548025 TCATCAAACTTATCCAGTTATCCTCAA 58.452 33.333 0.00 0.00 45.77 3.02
646 1639 8.616076 CATCAAACTTATCCAGTTATCCTCAAC 58.384 37.037 0.00 0.00 45.77 3.18
647 1640 7.918076 TCAAACTTATCCAGTTATCCTCAACT 58.082 34.615 0.00 0.00 45.77 3.16
665 1658 7.038587 TCCTCAACTCAGTAAACCTGCTTAATA 60.039 37.037 0.00 0.00 41.25 0.98
673 1666 7.065324 TCAGTAAACCTGCTTAATAACAATCGG 59.935 37.037 0.00 0.00 41.25 4.18
684 1677 9.562583 GCTTAATAACAATCGGTTTTTACATCA 57.437 29.630 0.00 0.00 40.96 3.07
715 1708 7.148018 GGAGCATGTCATTTTTCTCTTCCATTA 60.148 37.037 0.00 0.00 0.00 1.90
719 1712 9.865321 CATGTCATTTTTCTCTTCCATTACAAT 57.135 29.630 0.00 0.00 0.00 2.71
723 1716 8.533657 TCATTTTTCTCTTCCATTACAATGCAT 58.466 29.630 0.00 0.00 35.08 3.96
724 1717 9.806203 CATTTTTCTCTTCCATTACAATGCATA 57.194 29.630 0.00 0.00 35.08 3.14
726 1719 6.624352 TTCTCTTCCATTACAATGCATAGC 57.376 37.500 0.00 0.00 35.08 2.97
742 3079 5.422145 TGCATAGCCATATGTGCTAGTATG 58.578 41.667 22.23 18.84 43.98 2.39
743 3080 4.813161 GCATAGCCATATGTGCTAGTATGG 59.187 45.833 22.23 11.18 46.54 2.74
757 3094 6.473397 GCTAGTATGGCATAAATGAGACAC 57.527 41.667 9.14 0.00 44.73 3.67
758 3095 5.119279 GCTAGTATGGCATAAATGAGACACG 59.881 44.000 9.14 0.00 44.73 4.49
759 3096 5.023533 AGTATGGCATAAATGAGACACGT 57.976 39.130 9.14 0.00 0.00 4.49
760 3097 6.156748 AGTATGGCATAAATGAGACACGTA 57.843 37.500 9.14 0.00 0.00 3.57
761 3098 6.759272 AGTATGGCATAAATGAGACACGTAT 58.241 36.000 9.14 0.00 0.00 3.06
762 3099 6.868864 AGTATGGCATAAATGAGACACGTATC 59.131 38.462 9.14 0.00 0.00 2.24
763 3100 5.017294 TGGCATAAATGAGACACGTATCA 57.983 39.130 0.00 0.00 35.10 2.15
764 3101 5.610398 TGGCATAAATGAGACACGTATCAT 58.390 37.500 0.00 1.51 42.66 2.45
765 3102 5.466393 TGGCATAAATGAGACACGTATCATG 59.534 40.000 7.99 0.00 40.27 3.07
766 3103 5.377358 GCATAAATGAGACACGTATCATGC 58.623 41.667 7.99 5.41 40.27 4.06
767 3104 5.050159 GCATAAATGAGACACGTATCATGCA 60.050 40.000 7.99 0.00 40.27 3.96
768 3105 6.511605 GCATAAATGAGACACGTATCATGCAA 60.512 38.462 7.99 0.00 40.27 4.08
800 3137 7.703058 ATATTTGAAAACGAAGGGAGTTGAT 57.297 32.000 0.00 0.00 31.43 2.57
802 3139 4.079980 TGAAAACGAAGGGAGTTGATGA 57.920 40.909 0.00 0.00 31.43 2.92
833 3170 3.922171 TGTTGGGCCATTCTTTTTGTT 57.078 38.095 7.26 0.00 0.00 2.83
837 3174 5.105997 TGTTGGGCCATTCTTTTTGTTTTTG 60.106 36.000 7.26 0.00 0.00 2.44
839 3176 5.012893 TGGGCCATTCTTTTTGTTTTTGTT 58.987 33.333 0.00 0.00 0.00 2.83
842 3179 6.309980 GGGCCATTCTTTTTGTTTTTGTTTTG 59.690 34.615 4.39 0.00 0.00 2.44
843 3180 7.087007 GGCCATTCTTTTTGTTTTTGTTTTGA 58.913 30.769 0.00 0.00 0.00 2.69
844 3181 7.273164 GGCCATTCTTTTTGTTTTTGTTTTGAG 59.727 33.333 0.00 0.00 0.00 3.02
845 3182 8.020244 GCCATTCTTTTTGTTTTTGTTTTGAGA 58.980 29.630 0.00 0.00 0.00 3.27
846 3183 9.890352 CCATTCTTTTTGTTTTTGTTTTGAGAA 57.110 25.926 0.00 0.00 0.00 2.87
928 3268 1.472376 GCGGAGAAGTGAGGAGATTGG 60.472 57.143 0.00 0.00 0.00 3.16
1311 3658 4.796830 ACGCCGTATACAGCATTATTATCG 59.203 41.667 11.50 0.00 0.00 2.92
1385 3732 1.449778 GCCCCAAACTAGCGGAGTC 60.450 63.158 0.00 0.00 37.44 3.36
1483 3830 6.620678 TGCAGAATTAGTTGTATTTCTTGCC 58.379 36.000 0.00 0.00 29.96 4.52
1504 3851 4.502016 CCCTACGTCATAGCTCTCGTATA 58.498 47.826 0.00 0.00 37.95 1.47
1505 3852 5.117584 CCCTACGTCATAGCTCTCGTATAT 58.882 45.833 0.00 0.00 37.95 0.86
1506 3853 6.279123 CCCTACGTCATAGCTCTCGTATATA 58.721 44.000 0.00 0.00 37.95 0.86
1507 3854 6.930164 CCCTACGTCATAGCTCTCGTATATAT 59.070 42.308 0.00 0.00 37.95 0.86
1729 4076 7.174107 ACCAAACTGCTTAAATGCTTCATAT 57.826 32.000 0.00 0.00 0.00 1.78
1753 4100 4.389890 TGCCAGTTGATATTCCATTTGC 57.610 40.909 0.00 0.00 0.00 3.68
1755 4102 4.142116 TGCCAGTTGATATTCCATTTGCTG 60.142 41.667 0.00 0.00 0.00 4.41
2446 4795 3.230134 TGCACTGCAGGTAATCCTTTTT 58.770 40.909 19.93 0.00 43.07 1.94
2482 4831 5.816258 AGCAATAGATAGATCAATCCATGCG 59.184 40.000 0.00 0.00 35.78 4.73
2562 4911 4.780554 TGGTCACTGGTCCACTTTATATCA 59.219 41.667 0.00 0.00 0.00 2.15
3202 5551 9.796180 CCAGTAATACAAGTAGGTATAGAGAGT 57.204 37.037 0.00 0.00 32.95 3.24
3596 5953 7.023575 AGATAAGCAACAAATACTTTTCAGCG 58.976 34.615 0.00 0.00 0.00 5.18
4466 6927 1.073763 ACACTTATGGCTGCTGTTGGA 59.926 47.619 0.00 0.00 0.00 3.53
4610 7071 1.133598 GATCGTGTCCGTGATGGTGTA 59.866 52.381 0.00 0.00 39.52 2.90
4917 7391 5.746245 CGGAGACACTCAGAGATTTATCAAC 59.254 44.000 3.79 0.00 31.08 3.18
4942 7416 8.614814 ACATATGCCTTGGGTAAGATTATGTAT 58.385 33.333 1.58 0.00 34.71 2.29
4993 7467 5.687166 TCCAACTACCCTAGTTACAATGG 57.313 43.478 0.00 0.00 46.66 3.16
4994 7468 4.080751 TCCAACTACCCTAGTTACAATGGC 60.081 45.833 0.00 0.00 46.66 4.40
4995 7469 4.323945 CCAACTACCCTAGTTACAATGGCA 60.324 45.833 0.00 0.00 46.66 4.92
4996 7470 5.250200 CAACTACCCTAGTTACAATGGCAA 58.750 41.667 0.00 0.00 46.66 4.52
4997 7471 5.710409 ACTACCCTAGTTACAATGGCAAT 57.290 39.130 0.00 0.00 34.86 3.56
4998 7472 6.818281 ACTACCCTAGTTACAATGGCAATA 57.182 37.500 0.00 0.00 34.86 1.90
4999 7473 7.388638 ACTACCCTAGTTACAATGGCAATAT 57.611 36.000 0.00 0.00 34.86 1.28
5000 7474 7.224297 ACTACCCTAGTTACAATGGCAATATG 58.776 38.462 0.00 0.00 34.86 1.78
5041 7519 3.592059 TCAGCATGTTTAAGTCCCGTAC 58.408 45.455 0.00 0.00 37.40 3.67
5177 7655 3.933332 GTGCTCCACTACCTTGTTCATAC 59.067 47.826 0.00 0.00 0.00 2.39
5261 7746 3.297134 TCAAAGCTGTTCTTCCCACTT 57.703 42.857 0.00 0.00 32.88 3.16
5470 7955 5.510179 CCAAATTTTGACATCTGACAAGGCT 60.510 40.000 10.72 0.00 32.04 4.58
5901 8527 7.783042 AGTGAAGTCTATAAGGTATGTTGTCC 58.217 38.462 0.00 0.00 0.00 4.02
5959 8585 9.935241 ATACATCATCACTAATGAGTAATGACC 57.065 33.333 0.00 0.00 42.13 4.02
6321 8947 2.426522 GTGGTAGCAGCACAGAATGAA 58.573 47.619 11.81 0.00 45.26 2.57
6493 9119 7.448777 ACACATAGATCATACTTGACTCGGTAT 59.551 37.037 0.00 0.00 33.85 2.73
6679 9340 1.812235 TGCTTTCATCGAGCATGTGT 58.188 45.000 0.00 0.00 44.63 3.72
6775 9436 3.138884 TGACCATACATGCACACACTT 57.861 42.857 0.00 0.00 0.00 3.16
6868 9529 1.133513 TGCTGGGACAACAGTTTCCAT 60.134 47.619 13.40 0.00 40.59 3.41
6892 9553 8.950210 CATTACTGACATCCATTTTCTGTACTT 58.050 33.333 0.00 0.00 0.00 2.24
6949 9610 0.595095 CACCAGCCAAAGTCAAGCTC 59.405 55.000 0.00 0.00 33.70 4.09
7073 9734 1.066573 ACGCCTGATGGTTCTCTTCTG 60.067 52.381 0.00 0.00 35.27 3.02
7116 9777 1.115467 AGGACTGGGCTCTTATGTCG 58.885 55.000 0.00 0.00 0.00 4.35
7225 9886 7.096551 ACACTTAGAAGCAATTTTGTGTTTGT 58.903 30.769 0.00 0.00 34.32 2.83
7261 9922 9.363763 CACTTACTACCAATGCATCTATCATAG 57.636 37.037 0.00 0.00 0.00 2.23
7283 9944 2.674954 TGCACCGAATTTTGATTGCAG 58.325 42.857 8.17 0.00 35.13 4.41
7392 10053 3.134458 GGTTCACTCTGTTCTTCCTGTG 58.866 50.000 0.00 0.00 0.00 3.66
7678 10356 0.106149 GTAATACCGAGTGGGCCCAG 59.894 60.000 29.55 17.01 40.62 4.45
7733 10411 6.916440 TCTCAATCTTGAATGTGATGTTTGG 58.084 36.000 0.00 0.00 36.64 3.28
7752 10430 1.699730 GCAACCCCAAAGTAACCACT 58.300 50.000 0.00 0.00 36.19 4.00
7754 10432 1.877443 CAACCCCAAAGTAACCACTCG 59.123 52.381 0.00 0.00 32.29 4.18
7756 10434 0.958876 CCCCAAAGTAACCACTCGGC 60.959 60.000 0.00 0.00 32.29 5.54
7836 10515 4.926832 TGACAACGTGATAACGATGTGATT 59.073 37.500 21.89 0.00 46.28 2.57
7879 10558 8.601047 TTGGGTTTATCCAACATCATTATTCA 57.399 30.769 0.00 0.00 41.44 2.57
7953 12257 9.417561 AGGAAAACAAGATCATCATCAATACAT 57.582 29.630 0.00 0.00 0.00 2.29
7954 12258 9.459640 GGAAAACAAGATCATCATCAATACATG 57.540 33.333 0.00 0.00 0.00 3.21
7959 12263 7.173390 ACAAGATCATCATCAATACATGAGCTG 59.827 37.037 0.00 0.00 41.33 4.24
8035 12340 1.745264 GGGAGATGAAGGAGCTCGG 59.255 63.158 7.83 0.00 38.05 4.63
8054 12359 3.712881 GAGCACGACCGTTGTGGC 61.713 66.667 18.70 11.66 43.94 5.01
8055 12360 4.235762 AGCACGACCGTTGTGGCT 62.236 61.111 18.70 13.42 43.94 4.75
8124 12429 4.687215 GGTGGCTGCTGCGACTGA 62.687 66.667 25.29 0.00 45.35 3.41
8125 12430 2.666190 GTGGCTGCTGCGACTGAA 60.666 61.111 20.70 0.00 43.22 3.02
8126 12431 2.110835 TGGCTGCTGCGACTGAAA 59.889 55.556 9.65 0.00 40.82 2.69
8127 12432 1.962822 TGGCTGCTGCGACTGAAAG 60.963 57.895 9.65 0.00 40.82 2.62
8128 12433 2.684843 GGCTGCTGCGACTGAAAGG 61.685 63.158 9.65 0.00 38.18 3.11
8129 12434 1.669115 GCTGCTGCGACTGAAAGGA 60.669 57.895 0.00 0.00 39.30 3.36
8130 12435 1.023513 GCTGCTGCGACTGAAAGGAT 61.024 55.000 0.00 0.00 39.30 3.24
8131 12436 1.005340 CTGCTGCGACTGAAAGGATC 58.995 55.000 0.00 0.00 39.30 3.36
8132 12437 0.737367 TGCTGCGACTGAAAGGATCG 60.737 55.000 0.00 0.00 39.30 3.69
8133 12438 0.458543 GCTGCGACTGAAAGGATCGA 60.459 55.000 0.00 0.00 39.30 3.59
8134 12439 1.554392 CTGCGACTGAAAGGATCGAG 58.446 55.000 0.00 0.00 39.30 4.04
8135 12440 1.133216 CTGCGACTGAAAGGATCGAGA 59.867 52.381 0.00 0.00 39.30 4.04
8136 12441 1.751351 TGCGACTGAAAGGATCGAGAT 59.249 47.619 0.00 0.00 39.30 2.75
8137 12442 2.123342 GCGACTGAAAGGATCGAGATG 58.877 52.381 0.00 0.00 39.30 2.90
8138 12443 2.736978 CGACTGAAAGGATCGAGATGG 58.263 52.381 0.00 0.00 39.30 3.51
8139 12444 2.359214 CGACTGAAAGGATCGAGATGGA 59.641 50.000 0.00 0.00 39.30 3.41
8140 12445 3.712187 GACTGAAAGGATCGAGATGGAC 58.288 50.000 0.00 0.00 39.30 4.02
8141 12446 2.432510 ACTGAAAGGATCGAGATGGACC 59.567 50.000 0.00 0.00 39.30 4.46
8142 12447 2.697751 CTGAAAGGATCGAGATGGACCT 59.302 50.000 0.00 0.00 0.00 3.85
8143 12448 3.891977 CTGAAAGGATCGAGATGGACCTA 59.108 47.826 0.00 0.00 0.00 3.08
8144 12449 3.891977 TGAAAGGATCGAGATGGACCTAG 59.108 47.826 0.00 0.00 0.00 3.02
8145 12450 3.885976 AAGGATCGAGATGGACCTAGA 57.114 47.619 0.00 0.00 0.00 2.43
8146 12451 3.433306 AGGATCGAGATGGACCTAGAG 57.567 52.381 0.00 0.00 0.00 2.43
8147 12452 2.041081 AGGATCGAGATGGACCTAGAGG 59.959 54.545 0.00 0.00 42.17 3.69
8148 12453 2.040545 GGATCGAGATGGACCTAGAGGA 59.959 54.545 1.60 0.00 38.94 3.71
8149 12454 2.940994 TCGAGATGGACCTAGAGGAG 57.059 55.000 1.60 0.00 38.94 3.69
8160 12465 2.896039 CCTAGAGGAGGGGTGAATAGG 58.104 57.143 0.00 0.00 42.39 2.57
8161 12466 2.180308 CCTAGAGGAGGGGTGAATAGGT 59.820 54.545 0.00 0.00 42.39 3.08
8162 12467 3.401683 CCTAGAGGAGGGGTGAATAGGTA 59.598 52.174 0.00 0.00 42.39 3.08
8163 12468 3.331718 AGAGGAGGGGTGAATAGGTAC 57.668 52.381 0.00 0.00 0.00 3.34
8164 12469 2.590611 AGAGGAGGGGTGAATAGGTACA 59.409 50.000 0.00 0.00 0.00 2.90
8165 12470 3.013648 AGAGGAGGGGTGAATAGGTACAA 59.986 47.826 0.00 0.00 0.00 2.41
8166 12471 3.974642 GAGGAGGGGTGAATAGGTACAAT 59.025 47.826 0.00 0.00 0.00 2.71
8167 12472 4.380791 AGGAGGGGTGAATAGGTACAATT 58.619 43.478 0.00 0.00 0.00 2.32
8168 12473 5.544682 AGGAGGGGTGAATAGGTACAATTA 58.455 41.667 0.00 0.00 0.00 1.40
8169 12474 5.368816 AGGAGGGGTGAATAGGTACAATTAC 59.631 44.000 0.00 0.00 0.00 1.89
8170 12475 5.131475 GGAGGGGTGAATAGGTACAATTACA 59.869 44.000 0.00 0.00 0.00 2.41
8171 12476 6.353255 GGAGGGGTGAATAGGTACAATTACAA 60.353 42.308 0.00 0.00 0.00 2.41
8172 12477 7.034967 AGGGGTGAATAGGTACAATTACAAA 57.965 36.000 0.00 0.00 0.00 2.83
8173 12478 7.648770 AGGGGTGAATAGGTACAATTACAAAT 58.351 34.615 0.00 0.00 0.00 2.32
8174 12479 8.119891 AGGGGTGAATAGGTACAATTACAAATT 58.880 33.333 0.00 0.00 0.00 1.82
8175 12480 8.755028 GGGGTGAATAGGTACAATTACAAATTT 58.245 33.333 0.00 0.00 0.00 1.82
8220 12525 4.410492 GCACTAATGCGGAATATGAAGG 57.590 45.455 0.00 0.00 43.33 3.46
8221 12526 3.815401 GCACTAATGCGGAATATGAAGGT 59.185 43.478 0.00 0.00 43.33 3.50
8222 12527 4.319766 GCACTAATGCGGAATATGAAGGTG 60.320 45.833 0.00 0.00 43.33 4.00
8223 12528 5.056480 CACTAATGCGGAATATGAAGGTGA 58.944 41.667 0.00 0.00 0.00 4.02
8224 12529 5.178252 CACTAATGCGGAATATGAAGGTGAG 59.822 44.000 0.00 0.00 0.00 3.51
8225 12530 1.953559 TGCGGAATATGAAGGTGAGC 58.046 50.000 0.00 0.00 0.00 4.26
8226 12531 1.230324 GCGGAATATGAAGGTGAGCC 58.770 55.000 0.00 0.00 0.00 4.70
8228 12533 2.037251 GCGGAATATGAAGGTGAGCCTA 59.963 50.000 0.00 0.00 46.33 3.93
8229 12534 3.494398 GCGGAATATGAAGGTGAGCCTAA 60.494 47.826 0.00 0.00 46.33 2.69
8230 12535 4.058817 CGGAATATGAAGGTGAGCCTAAC 58.941 47.826 0.00 0.00 46.33 2.34
8231 12536 4.442893 CGGAATATGAAGGTGAGCCTAACA 60.443 45.833 0.00 0.00 46.33 2.41
8232 12537 5.437060 GGAATATGAAGGTGAGCCTAACAA 58.563 41.667 0.00 0.00 46.33 2.83
8233 12538 6.064717 GGAATATGAAGGTGAGCCTAACAAT 58.935 40.000 0.00 0.00 46.33 2.71
8234 12539 6.547510 GGAATATGAAGGTGAGCCTAACAATT 59.452 38.462 0.00 0.00 46.33 2.32
8235 12540 6.949352 ATATGAAGGTGAGCCTAACAATTG 57.051 37.500 3.24 3.24 46.33 2.32
8236 12541 2.819608 TGAAGGTGAGCCTAACAATTGC 59.180 45.455 5.05 0.00 46.33 3.56
8237 12542 2.584835 AGGTGAGCCTAACAATTGCA 57.415 45.000 5.05 0.00 44.90 4.08
8238 12543 2.875296 AGGTGAGCCTAACAATTGCAA 58.125 42.857 5.05 0.00 44.90 4.08
8239 12544 2.821969 AGGTGAGCCTAACAATTGCAAG 59.178 45.455 4.94 2.95 44.90 4.01
8240 12545 2.558359 GGTGAGCCTAACAATTGCAAGT 59.442 45.455 4.94 0.00 0.00 3.16
8241 12546 3.568538 GTGAGCCTAACAATTGCAAGTG 58.431 45.455 24.24 24.24 0.00 3.16
8242 12547 3.004734 GTGAGCCTAACAATTGCAAGTGT 59.995 43.478 25.66 25.66 39.11 3.55
8243 12548 4.215399 GTGAGCCTAACAATTGCAAGTGTA 59.785 41.667 30.38 17.80 36.02 2.90
8244 12549 4.455533 TGAGCCTAACAATTGCAAGTGTAG 59.544 41.667 30.38 24.16 36.02 2.74
8245 12550 4.398319 AGCCTAACAATTGCAAGTGTAGT 58.602 39.130 30.38 19.30 36.02 2.73
8246 12551 5.556915 AGCCTAACAATTGCAAGTGTAGTA 58.443 37.500 30.38 19.38 36.02 1.82
8247 12552 5.411669 AGCCTAACAATTGCAAGTGTAGTAC 59.588 40.000 30.38 20.17 36.02 2.73
8248 12553 5.411669 GCCTAACAATTGCAAGTGTAGTACT 59.588 40.000 30.38 17.92 42.89 2.73
8249 12554 6.592607 GCCTAACAATTGCAAGTGTAGTACTA 59.407 38.462 30.38 18.07 39.18 1.82
8250 12555 7.118680 GCCTAACAATTGCAAGTGTAGTACTAA 59.881 37.037 30.38 10.84 39.18 2.24
8251 12556 8.656849 CCTAACAATTGCAAGTGTAGTACTAAG 58.343 37.037 30.38 17.80 39.18 2.18
8252 12557 9.204570 CTAACAATTGCAAGTGTAGTACTAAGT 57.795 33.333 30.38 15.20 39.18 2.24
8253 12558 7.421530 ACAATTGCAAGTGTAGTACTAAGTG 57.578 36.000 29.34 1.26 39.18 3.16
8254 12559 6.073222 ACAATTGCAAGTGTAGTACTAAGTGC 60.073 38.462 29.34 11.77 39.18 4.40
8255 12560 4.866508 TGCAAGTGTAGTACTAAGTGCT 57.133 40.909 20.26 9.17 39.99 4.40
8256 12561 5.970317 TGCAAGTGTAGTACTAAGTGCTA 57.030 39.130 20.26 10.44 39.99 3.49
8257 12562 6.335471 TGCAAGTGTAGTACTAAGTGCTAA 57.665 37.500 20.26 6.92 39.99 3.09
8258 12563 6.387465 TGCAAGTGTAGTACTAAGTGCTAAG 58.613 40.000 20.26 9.24 39.99 2.18
8259 12564 5.288952 GCAAGTGTAGTACTAAGTGCTAAGC 59.711 44.000 3.61 5.39 39.18 3.09
8260 12565 6.387465 CAAGTGTAGTACTAAGTGCTAAGCA 58.613 40.000 3.61 0.00 39.18 3.91
8261 12566 6.585695 AGTGTAGTACTAAGTGCTAAGCAA 57.414 37.500 3.61 0.00 37.95 3.91
8262 12567 6.622549 AGTGTAGTACTAAGTGCTAAGCAAG 58.377 40.000 3.61 0.00 37.95 4.01
8263 12568 6.433404 AGTGTAGTACTAAGTGCTAAGCAAGA 59.567 38.462 3.61 0.00 37.95 3.02
8264 12569 7.122948 AGTGTAGTACTAAGTGCTAAGCAAGAT 59.877 37.037 3.61 0.00 37.95 2.40
8265 12570 8.404000 GTGTAGTACTAAGTGCTAAGCAAGATA 58.596 37.037 3.61 0.00 41.47 1.98
8266 12571 8.963725 TGTAGTACTAAGTGCTAAGCAAGATAA 58.036 33.333 3.61 0.00 41.47 1.75
8267 12572 9.453325 GTAGTACTAAGTGCTAAGCAAGATAAG 57.547 37.037 3.61 0.00 41.47 1.73
8268 12573 6.981559 AGTACTAAGTGCTAAGCAAGATAAGC 59.018 38.462 0.00 0.00 41.47 3.09
8269 12574 5.734720 ACTAAGTGCTAAGCAAGATAAGCA 58.265 37.500 0.00 0.00 41.47 3.91
8270 12575 6.173339 ACTAAGTGCTAAGCAAGATAAGCAA 58.827 36.000 0.00 0.00 45.81 3.91
8271 12576 5.964958 AAGTGCTAAGCAAGATAAGCAAA 57.035 34.783 0.00 0.00 45.81 3.68
8272 12577 6.521151 AAGTGCTAAGCAAGATAAGCAAAT 57.479 33.333 0.00 0.00 45.81 2.32
8273 12578 7.630242 AAGTGCTAAGCAAGATAAGCAAATA 57.370 32.000 0.00 0.00 45.81 1.40
8274 12579 7.020914 AGTGCTAAGCAAGATAAGCAAATAC 57.979 36.000 0.00 0.00 45.81 1.89
8275 12580 6.038714 AGTGCTAAGCAAGATAAGCAAATACC 59.961 38.462 0.00 0.00 45.81 2.73
8276 12581 5.885352 TGCTAAGCAAGATAAGCAAATACCA 59.115 36.000 0.00 0.00 41.74 3.25
8277 12582 6.183360 TGCTAAGCAAGATAAGCAAATACCAC 60.183 38.462 0.00 0.00 41.74 4.16
8278 12583 6.183360 GCTAAGCAAGATAAGCAAATACCACA 60.183 38.462 0.00 0.00 35.05 4.17
8279 12584 6.588719 AAGCAAGATAAGCAAATACCACAA 57.411 33.333 0.00 0.00 0.00 3.33
8280 12585 6.199937 AGCAAGATAAGCAAATACCACAAG 57.800 37.500 0.00 0.00 0.00 3.16
8281 12586 5.711976 AGCAAGATAAGCAAATACCACAAGT 59.288 36.000 0.00 0.00 0.00 3.16
8282 12587 6.884295 AGCAAGATAAGCAAATACCACAAGTA 59.116 34.615 0.00 0.00 34.76 2.24
8283 12588 7.557719 AGCAAGATAAGCAAATACCACAAGTAT 59.442 33.333 0.00 0.00 43.85 2.12
8284 12589 7.645340 GCAAGATAAGCAAATACCACAAGTATG 59.355 37.037 0.00 0.00 40.98 2.39
8285 12590 8.677300 CAAGATAAGCAAATACCACAAGTATGT 58.323 33.333 0.00 0.00 40.98 2.29
8286 12591 9.899661 AAGATAAGCAAATACCACAAGTATGTA 57.100 29.630 0.00 0.00 40.98 2.29
8287 12592 9.899661 AGATAAGCAAATACCACAAGTATGTAA 57.100 29.630 0.00 0.00 40.98 2.41
8289 12594 7.996098 AAGCAAATACCACAAGTATGTAAGT 57.004 32.000 0.00 0.00 40.98 2.24
8291 12596 9.509956 AAGCAAATACCACAAGTATGTAAGTAA 57.490 29.630 0.00 0.00 40.98 2.24
8292 12597 9.162764 AGCAAATACCACAAGTATGTAAGTAAG 57.837 33.333 0.00 0.00 40.98 2.34
8293 12598 7.908601 GCAAATACCACAAGTATGTAAGTAAGC 59.091 37.037 0.00 0.00 40.98 3.09
8294 12599 8.941977 CAAATACCACAAGTATGTAAGTAAGCA 58.058 33.333 0.00 0.00 40.98 3.91
8295 12600 9.509956 AAATACCACAAGTATGTAAGTAAGCAA 57.490 29.630 0.00 0.00 40.98 3.91
8296 12601 8.718102 ATACCACAAGTATGTAAGTAAGCAAG 57.282 34.615 0.00 0.00 40.31 4.01
8297 12602 5.411669 ACCACAAGTATGTAAGTAAGCAAGC 59.588 40.000 0.00 0.00 37.82 4.01
8298 12603 5.411361 CCACAAGTATGTAAGTAAGCAAGCA 59.589 40.000 0.00 0.00 37.82 3.91
8299 12604 6.307155 CACAAGTATGTAAGTAAGCAAGCAC 58.693 40.000 0.00 0.00 37.82 4.40
8300 12605 5.995282 ACAAGTATGTAAGTAAGCAAGCACA 59.005 36.000 0.00 0.00 38.24 4.57
8301 12606 6.485313 ACAAGTATGTAAGTAAGCAAGCACAA 59.515 34.615 0.00 0.00 38.24 3.33
8302 12607 7.174946 ACAAGTATGTAAGTAAGCAAGCACAAT 59.825 33.333 0.00 0.00 38.24 2.71
8303 12608 8.664798 CAAGTATGTAAGTAAGCAAGCACAATA 58.335 33.333 0.00 0.00 0.00 1.90
8304 12609 8.964476 AGTATGTAAGTAAGCAAGCACAATAT 57.036 30.769 0.00 0.00 0.00 1.28
8305 12610 8.830580 AGTATGTAAGTAAGCAAGCACAATATG 58.169 33.333 0.00 0.00 0.00 1.78
8306 12611 7.864108 ATGTAAGTAAGCAAGCACAATATGA 57.136 32.000 0.00 0.00 0.00 2.15
8307 12612 7.864108 TGTAAGTAAGCAAGCACAATATGAT 57.136 32.000 0.00 0.00 0.00 2.45
8308 12613 8.956533 TGTAAGTAAGCAAGCACAATATGATA 57.043 30.769 0.00 0.00 0.00 2.15
8309 12614 9.559732 TGTAAGTAAGCAAGCACAATATGATAT 57.440 29.630 0.00 0.00 0.00 1.63
8317 12622 8.790718 AGCAAGCACAATATGATATAAGAAAGG 58.209 33.333 0.00 0.00 0.00 3.11
8318 12623 8.025445 GCAAGCACAATATGATATAAGAAAGGG 58.975 37.037 0.00 0.00 0.00 3.95
8319 12624 7.693969 AGCACAATATGATATAAGAAAGGGC 57.306 36.000 0.00 0.00 0.00 5.19
8320 12625 7.465116 AGCACAATATGATATAAGAAAGGGCT 58.535 34.615 0.00 0.00 0.00 5.19
8321 12626 8.605947 AGCACAATATGATATAAGAAAGGGCTA 58.394 33.333 0.00 0.00 0.00 3.93
8322 12627 9.231297 GCACAATATGATATAAGAAAGGGCTAA 57.769 33.333 0.00 0.00 0.00 3.09
8328 12633 7.914427 TGATATAAGAAAGGGCTAAGAGACA 57.086 36.000 0.00 0.00 0.00 3.41
8329 12634 8.319057 TGATATAAGAAAGGGCTAAGAGACAA 57.681 34.615 0.00 0.00 0.00 3.18
8330 12635 8.938883 TGATATAAGAAAGGGCTAAGAGACAAT 58.061 33.333 0.00 0.00 0.00 2.71
8331 12636 9.785982 GATATAAGAAAGGGCTAAGAGACAATT 57.214 33.333 0.00 0.00 0.00 2.32
8334 12639 7.689446 AAGAAAGGGCTAAGAGACAATTAAC 57.311 36.000 0.00 0.00 0.00 2.01
8335 12640 6.181190 AGAAAGGGCTAAGAGACAATTAACC 58.819 40.000 0.00 0.00 0.00 2.85
8336 12641 5.514500 AAGGGCTAAGAGACAATTAACCA 57.486 39.130 0.00 0.00 0.00 3.67
8337 12642 4.844884 AGGGCTAAGAGACAATTAACCAC 58.155 43.478 0.00 0.00 0.00 4.16
8338 12643 4.288626 AGGGCTAAGAGACAATTAACCACA 59.711 41.667 0.00 0.00 0.00 4.17
8339 12644 5.007682 GGGCTAAGAGACAATTAACCACAA 58.992 41.667 0.00 0.00 0.00 3.33
8340 12645 5.123979 GGGCTAAGAGACAATTAACCACAAG 59.876 44.000 0.00 0.00 0.00 3.16
8341 12646 5.705905 GGCTAAGAGACAATTAACCACAAGT 59.294 40.000 0.00 0.00 0.00 3.16
8342 12647 6.877322 GGCTAAGAGACAATTAACCACAAGTA 59.123 38.462 0.00 0.00 0.00 2.24
8343 12648 7.064728 GGCTAAGAGACAATTAACCACAAGTAG 59.935 40.741 0.00 0.00 0.00 2.57
8344 12649 7.817962 GCTAAGAGACAATTAACCACAAGTAGA 59.182 37.037 0.00 0.00 0.00 2.59
8345 12650 9.360093 CTAAGAGACAATTAACCACAAGTAGAG 57.640 37.037 0.00 0.00 0.00 2.43
8346 12651 7.540474 AGAGACAATTAACCACAAGTAGAGA 57.460 36.000 0.00 0.00 0.00 3.10
8347 12652 7.607250 AGAGACAATTAACCACAAGTAGAGAG 58.393 38.462 0.00 0.00 0.00 3.20
8348 12653 7.233757 AGAGACAATTAACCACAAGTAGAGAGT 59.766 37.037 0.00 0.00 0.00 3.24
8349 12654 7.736893 AGACAATTAACCACAAGTAGAGAGTT 58.263 34.615 0.00 0.00 0.00 3.01
8350 12655 8.867097 AGACAATTAACCACAAGTAGAGAGTTA 58.133 33.333 0.00 0.00 0.00 2.24
8351 12656 9.141400 GACAATTAACCACAAGTAGAGAGTTAG 57.859 37.037 0.00 0.00 0.00 2.34
8352 12657 8.095169 ACAATTAACCACAAGTAGAGAGTTAGG 58.905 37.037 0.00 0.00 0.00 2.69
8353 12658 6.600882 TTAACCACAAGTAGAGAGTTAGGG 57.399 41.667 0.00 0.00 0.00 3.53
8354 12659 4.129317 ACCACAAGTAGAGAGTTAGGGT 57.871 45.455 0.00 0.00 0.00 4.34
8355 12660 4.490706 ACCACAAGTAGAGAGTTAGGGTT 58.509 43.478 0.00 0.00 0.00 4.11
8356 12661 5.648247 ACCACAAGTAGAGAGTTAGGGTTA 58.352 41.667 0.00 0.00 0.00 2.85
8357 12662 5.715753 ACCACAAGTAGAGAGTTAGGGTTAG 59.284 44.000 0.00 0.00 0.00 2.34
8358 12663 5.127356 CCACAAGTAGAGAGTTAGGGTTAGG 59.873 48.000 0.00 0.00 0.00 2.69
8359 12664 5.950549 CACAAGTAGAGAGTTAGGGTTAGGA 59.049 44.000 0.00 0.00 0.00 2.94
8360 12665 6.436532 CACAAGTAGAGAGTTAGGGTTAGGAA 59.563 42.308 0.00 0.00 0.00 3.36
8361 12666 7.124448 CACAAGTAGAGAGTTAGGGTTAGGAAT 59.876 40.741 0.00 0.00 0.00 3.01
8362 12667 8.342270 ACAAGTAGAGAGTTAGGGTTAGGAATA 58.658 37.037 0.00 0.00 0.00 1.75
8363 12668 9.198475 CAAGTAGAGAGTTAGGGTTAGGAATAA 57.802 37.037 0.00 0.00 0.00 1.40
8364 12669 8.765488 AGTAGAGAGTTAGGGTTAGGAATAAC 57.235 38.462 0.00 0.00 0.00 1.89
8365 12670 7.784073 AGTAGAGAGTTAGGGTTAGGAATAACC 59.216 40.741 8.39 8.39 46.63 2.85
8373 12678 2.941064 GGTTAGGAATAACCGCAACTCC 59.059 50.000 1.65 0.00 44.74 3.85
8374 12679 2.589798 TAGGAATAACCGCAACTCCG 57.410 50.000 0.00 0.00 44.74 4.63
8381 12686 4.796231 CCGCAACTCCGGGAGACG 62.796 72.222 30.13 25.63 44.46 4.18
8392 12697 3.896317 GGGAGACGAGGATGTATGC 57.104 57.895 0.00 0.00 0.00 3.14
8393 12698 0.318762 GGGAGACGAGGATGTATGCC 59.681 60.000 0.00 0.00 34.40 4.40
8394 12699 0.039074 GGAGACGAGGATGTATGCCG 60.039 60.000 0.00 0.00 0.00 5.69
8395 12700 0.952280 GAGACGAGGATGTATGCCGA 59.048 55.000 0.00 0.00 0.00 5.54
8396 12701 1.542030 GAGACGAGGATGTATGCCGAT 59.458 52.381 0.00 0.00 0.00 4.18
8397 12702 1.270826 AGACGAGGATGTATGCCGATG 59.729 52.381 0.00 0.00 0.00 3.84
8398 12703 1.000163 GACGAGGATGTATGCCGATGT 60.000 52.381 0.00 0.00 0.00 3.06
8399 12704 1.412710 ACGAGGATGTATGCCGATGTT 59.587 47.619 0.00 0.00 0.00 2.71
8400 12705 2.061773 CGAGGATGTATGCCGATGTTC 58.938 52.381 0.00 0.00 0.00 3.18
8401 12706 2.545742 CGAGGATGTATGCCGATGTTCA 60.546 50.000 0.00 0.00 0.00 3.18
8402 12707 2.802816 GAGGATGTATGCCGATGTTCAC 59.197 50.000 0.00 0.00 0.00 3.18
8403 12708 2.435805 AGGATGTATGCCGATGTTCACT 59.564 45.455 0.00 0.00 0.00 3.41
8404 12709 3.118261 AGGATGTATGCCGATGTTCACTT 60.118 43.478 0.00 0.00 0.00 3.16
8405 12710 3.248602 GGATGTATGCCGATGTTCACTTC 59.751 47.826 0.00 0.00 0.00 3.01
8406 12711 2.627945 TGTATGCCGATGTTCACTTCC 58.372 47.619 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
111 112 2.434884 CCGCGTTGAGGTGATGCT 60.435 61.111 4.92 0.00 0.00 3.79
319 335 0.524862 ACGTACAAGCTAGTGACCGG 59.475 55.000 0.00 0.00 0.00 5.28
334 350 7.056002 CAACACATGCTCATTAGTTAACGTA 57.944 36.000 0.00 0.00 0.00 3.57
538 562 6.972901 TCGTACATGTTAGTTGCTCTCATAAG 59.027 38.462 2.30 0.00 0.00 1.73
595 1575 8.344831 TGATGAATCAATTGACAACCGATTATC 58.655 33.333 11.07 13.48 33.08 1.75
634 1627 6.936968 AGGTTTACTGAGTTGAGGATAACT 57.063 37.500 0.00 0.00 43.24 2.24
665 1658 6.255215 CGCTATGATGTAAAAACCGATTGTT 58.745 36.000 0.00 0.00 39.43 2.83
673 1666 4.875544 TGCTCCGCTATGATGTAAAAAC 57.124 40.909 0.00 0.00 0.00 2.43
684 1677 4.202441 AGAAAAATGACATGCTCCGCTAT 58.798 39.130 0.00 0.00 0.00 2.97
685 1678 3.609853 AGAAAAATGACATGCTCCGCTA 58.390 40.909 0.00 0.00 0.00 4.26
695 1688 7.814107 GCATTGTAATGGAAGAGAAAAATGACA 59.186 33.333 6.72 0.00 36.90 3.58
696 1689 7.814107 TGCATTGTAATGGAAGAGAAAAATGAC 59.186 33.333 6.72 0.00 36.90 3.06
715 1708 3.493334 AGCACATATGGCTATGCATTGT 58.507 40.909 15.87 0.00 40.47 2.71
719 1712 5.422145 CATACTAGCACATATGGCTATGCA 58.578 41.667 19.71 11.88 42.51 3.96
742 3079 5.615544 GCATGATACGTGTCTCATTTATGCC 60.616 44.000 16.92 5.02 29.74 4.40
743 3080 5.050159 TGCATGATACGTGTCTCATTTATGC 60.050 40.000 19.39 19.39 29.74 3.14
746 3083 6.976636 TTTGCATGATACGTGTCTCATTTA 57.023 33.333 13.73 1.42 29.74 1.40
748 3085 5.878332 TTTTGCATGATACGTGTCTCATT 57.122 34.783 13.73 0.00 29.74 2.57
749 3086 5.878332 TTTTTGCATGATACGTGTCTCAT 57.122 34.783 13.73 8.76 32.37 2.90
783 3120 3.815809 TGTCATCAACTCCCTTCGTTTT 58.184 40.909 0.00 0.00 0.00 2.43
784 3121 3.485463 TGTCATCAACTCCCTTCGTTT 57.515 42.857 0.00 0.00 0.00 3.60
788 3125 3.339141 GACCTTGTCATCAACTCCCTTC 58.661 50.000 0.00 0.00 32.09 3.46
791 3128 1.351017 TGGACCTTGTCATCAACTCCC 59.649 52.381 0.00 0.00 33.68 4.30
825 3162 9.928236 TTGTCTTCTCAAAACAAAAACAAAAAG 57.072 25.926 0.00 0.00 30.39 2.27
833 3170 9.364989 CCTAACATTTGTCTTCTCAAAACAAAA 57.635 29.630 4.26 0.00 43.71 2.44
837 3174 5.920840 GGCCTAACATTTGTCTTCTCAAAAC 59.079 40.000 0.00 0.00 40.05 2.43
839 3176 5.136828 TGGCCTAACATTTGTCTTCTCAAA 58.863 37.500 3.32 0.00 40.74 2.69
842 3179 5.163612 GGAATGGCCTAACATTTGTCTTCTC 60.164 44.000 3.32 0.00 40.92 2.87
843 3180 4.706962 GGAATGGCCTAACATTTGTCTTCT 59.293 41.667 3.32 0.00 40.92 2.85
844 3181 4.462483 TGGAATGGCCTAACATTTGTCTTC 59.538 41.667 3.32 0.00 40.92 2.87
845 3182 4.415596 TGGAATGGCCTAACATTTGTCTT 58.584 39.130 3.32 0.00 40.92 3.01
846 3183 4.019174 CTGGAATGGCCTAACATTTGTCT 58.981 43.478 3.32 0.00 40.92 3.41
847 3184 3.429410 GCTGGAATGGCCTAACATTTGTC 60.429 47.826 3.32 0.00 40.92 3.18
848 3185 2.497273 GCTGGAATGGCCTAACATTTGT 59.503 45.455 3.32 0.00 40.92 2.83
849 3186 2.496871 TGCTGGAATGGCCTAACATTTG 59.503 45.455 3.32 0.00 40.92 2.32
857 3197 1.713005 ATCGGATGCTGGAATGGCCT 61.713 55.000 3.32 0.00 37.63 5.19
1311 3658 0.674895 ATGTGTCTTCAAGGCGAGGC 60.675 55.000 0.00 0.00 0.00 4.70
1483 3830 7.949903 ATATATACGAGAGCTATGACGTAGG 57.050 40.000 15.32 0.00 42.71 3.18
1729 4076 5.642919 GCAAATGGAATATCAACTGGCAAAA 59.357 36.000 0.00 0.00 0.00 2.44
1753 4100 6.183360 GGTCCATTGTATAACCAATCCAACAG 60.183 42.308 0.00 0.00 32.81 3.16
1755 4102 5.891551 AGGTCCATTGTATAACCAATCCAAC 59.108 40.000 0.00 0.00 32.81 3.77
2224 4572 4.927267 TTCCCTTGAAATGAGCTTCCTA 57.073 40.909 0.00 0.00 0.00 2.94
2384 4732 3.058224 GTCTCGGCAAAAATAGCAACACT 60.058 43.478 0.00 0.00 0.00 3.55
2482 4831 1.880027 ACCGCATGAAGAGACCAAAAC 59.120 47.619 0.00 0.00 0.00 2.43
2606 4955 7.770433 AGTGTATAATTCACTTTGCTATGCAGA 59.230 33.333 0.00 0.00 42.50 4.26
2761 5110 5.464057 TGAGAATGCAAAAGCAAAGAACATG 59.536 36.000 0.00 0.00 0.00 3.21
2791 5140 4.766375 TCTATGAAATTTCGGTCCTCACC 58.234 43.478 13.34 0.00 39.69 4.02
3596 5953 1.098050 CTTGGGGTGTGCTAGCAATC 58.902 55.000 21.29 14.92 0.00 2.67
4117 6569 7.151999 TGAGTGAACAAACACACTAAAATGT 57.848 32.000 0.00 0.00 45.54 2.71
4197 6649 9.883293 CATATGAGGTATATATTACTCCCTCCA 57.117 37.037 10.70 2.36 38.14 3.86
4917 7391 9.113838 GATACATAATCTTACCCAAGGCATATG 57.886 37.037 0.00 0.00 33.25 1.78
4993 7467 7.202526 ACAAACATACAGTATTGCCATATTGC 58.797 34.615 0.79 0.00 0.00 3.56
4994 7468 9.585099 AAACAAACATACAGTATTGCCATATTG 57.415 29.630 0.00 0.00 0.00 1.90
4995 7469 9.801873 GAAACAAACATACAGTATTGCCATATT 57.198 29.630 0.00 0.00 0.00 1.28
4996 7470 8.965819 TGAAACAAACATACAGTATTGCCATAT 58.034 29.630 0.00 0.00 0.00 1.78
4997 7471 8.341892 TGAAACAAACATACAGTATTGCCATA 57.658 30.769 0.00 0.00 0.00 2.74
4998 7472 7.225784 TGAAACAAACATACAGTATTGCCAT 57.774 32.000 0.00 0.00 0.00 4.40
4999 7473 6.641169 TGAAACAAACATACAGTATTGCCA 57.359 33.333 0.00 0.00 0.00 4.92
5000 7474 5.572896 GCTGAAACAAACATACAGTATTGCC 59.427 40.000 0.00 0.00 0.00 4.52
5041 7519 6.921857 CCTGAAATTGCATAAGCCTATCAAAG 59.078 38.462 0.00 0.00 41.13 2.77
5177 7655 8.686334 AGGCAACATTGTTATCTAACCTTAATG 58.314 33.333 0.86 8.77 35.22 1.90
5261 7746 2.097825 GCGGAGGGAGTAAGTTGTAGA 58.902 52.381 0.00 0.00 0.00 2.59
5901 8527 6.852853 GTGTGTGAACAGATCAGTAACAAATG 59.147 38.462 7.87 0.00 39.19 2.32
6321 8947 0.681175 GCAATGCCCACCTTTCAAGT 59.319 50.000 0.00 0.00 0.00 3.16
6493 9119 8.682710 GCATTTAAATACATACACTGGGAGAAA 58.317 33.333 0.00 0.00 0.00 2.52
6633 9260 8.873215 ACTGCACATAAAGTCATGTACTATAC 57.127 34.615 0.00 0.00 37.50 1.47
6775 9436 7.562454 AGAGGATGCAATTATCTTTGATGGAAA 59.438 33.333 0.00 0.00 0.00 3.13
6850 9511 4.216257 CAGTAATGGAAACTGTTGTCCCAG 59.784 45.833 14.77 0.00 39.61 4.45
6868 9529 8.154203 TGAAGTACAGAAAATGGATGTCAGTAA 58.846 33.333 0.00 0.00 0.00 2.24
6892 9553 3.052082 GCTTGCTTCGCAGCCTGA 61.052 61.111 4.17 0.00 46.74 3.86
6949 9610 1.352352 GGGGTCCATGGATCTGGTATG 59.648 57.143 24.26 0.00 37.57 2.39
7073 9734 3.701542 TGTCATCTCAGGGTATCAGTCAC 59.298 47.826 0.00 0.00 0.00 3.67
7147 9808 4.105377 CCCTCAATGATCCAATCTACCCTT 59.895 45.833 0.00 0.00 0.00 3.95
7225 9886 6.869913 GCATTGGTAGTAAGTGTACAACTACA 59.130 38.462 26.28 14.55 44.75 2.74
7261 9922 2.799412 TGCAATCAAAATTCGGTGCAAC 59.201 40.909 0.00 0.00 0.00 4.17
7283 9944 7.325821 CAGCTATCTTTCGATCAGAGATTACAC 59.674 40.741 7.52 0.00 32.68 2.90
7325 9986 6.800072 AGAAGAGATAGAAAAGATTCCGGT 57.200 37.500 0.00 0.00 36.12 5.28
7392 10053 9.209175 AGAACAATGTACTTCAAGAATAGACAC 57.791 33.333 0.00 0.00 0.00 3.67
7445 10106 0.827925 TTCCTCGACACCACTGCTCT 60.828 55.000 0.00 0.00 0.00 4.09
7449 10110 1.873591 CCTTTTTCCTCGACACCACTG 59.126 52.381 0.00 0.00 0.00 3.66
7509 10171 7.156673 TCTCACCTTAGGTTTGTAATGTGTAC 58.843 38.462 0.00 0.00 33.01 2.90
7575 10237 8.626526 GGATACAAGTAAAGAGAACAAAACCAA 58.373 33.333 0.00 0.00 0.00 3.67
7640 10318 9.366216 GGTATTACATTATCATTATCGTCTGCA 57.634 33.333 0.00 0.00 0.00 4.41
7701 10379 8.498054 TCACATTCAAGATTGAGATTTACTCC 57.502 34.615 0.00 0.00 44.34 3.85
7702 10380 9.932699 CATCACATTCAAGATTGAGATTTACTC 57.067 33.333 0.00 0.00 45.11 2.59
7703 10381 9.458727 ACATCACATTCAAGATTGAGATTTACT 57.541 29.630 0.00 0.00 38.61 2.24
7733 10411 1.611977 GAGTGGTTACTTTGGGGTTGC 59.388 52.381 0.00 0.00 37.25 4.17
7748 10426 0.107993 ATGACTGACATGCCGAGTGG 60.108 55.000 0.00 0.00 37.87 4.00
7756 10434 9.159364 CCATTAGAATATGGTATGACTGACATG 57.841 37.037 2.89 0.00 40.20 3.21
7910 10589 3.885724 TCCTGATCATGAGCGTTGTTA 57.114 42.857 6.46 0.00 0.00 2.41
7911 10590 2.768253 TCCTGATCATGAGCGTTGTT 57.232 45.000 6.46 0.00 0.00 2.83
7915 10594 3.057969 TGTTTTCCTGATCATGAGCGT 57.942 42.857 6.46 0.00 0.00 5.07
7916 10595 3.686241 TCTTGTTTTCCTGATCATGAGCG 59.314 43.478 6.46 1.26 0.00 5.03
7953 12257 0.035881 CTTGCCTCAAGACCAGCTCA 59.964 55.000 0.50 0.00 43.42 4.26
7954 12258 0.676151 CCTTGCCTCAAGACCAGCTC 60.676 60.000 8.04 0.00 43.42 4.09
7959 12263 1.075659 AAGCCCTTGCCTCAAGACC 59.924 57.895 8.04 0.00 43.42 3.85
8012 12317 3.154473 TCCTTCATCTCCCGGCCG 61.154 66.667 21.04 21.04 0.00 6.13
8017 12322 1.745264 CCGAGCTCCTTCATCTCCC 59.255 63.158 8.47 0.00 0.00 4.30
8035 12340 3.041940 CACAACGGTCGTGCTCCC 61.042 66.667 0.00 0.00 0.00 4.30
8061 12366 3.553096 CCCAAATCTTCTATCGACCGGAG 60.553 52.174 9.46 0.85 0.00 4.63
8067 12372 5.429681 TTTGGTCCCAAATCTTCTATCGA 57.570 39.130 7.40 0.00 40.51 3.59
8120 12425 2.432510 GGTCCATCTCGATCCTTTCAGT 59.567 50.000 0.00 0.00 0.00 3.41
8121 12426 2.697751 AGGTCCATCTCGATCCTTTCAG 59.302 50.000 0.00 0.00 0.00 3.02
8122 12427 2.752030 AGGTCCATCTCGATCCTTTCA 58.248 47.619 0.00 0.00 0.00 2.69
8123 12428 4.145807 TCTAGGTCCATCTCGATCCTTTC 58.854 47.826 0.00 0.00 0.00 2.62
8124 12429 4.148838 CTCTAGGTCCATCTCGATCCTTT 58.851 47.826 0.00 0.00 0.00 3.11
8125 12430 3.499563 CCTCTAGGTCCATCTCGATCCTT 60.500 52.174 0.00 0.00 0.00 3.36
8126 12431 2.041081 CCTCTAGGTCCATCTCGATCCT 59.959 54.545 0.00 0.00 0.00 3.24
8127 12432 2.040545 TCCTCTAGGTCCATCTCGATCC 59.959 54.545 0.00 0.00 36.34 3.36
8128 12433 3.343617 CTCCTCTAGGTCCATCTCGATC 58.656 54.545 0.00 0.00 36.34 3.69
8129 12434 2.041081 CCTCCTCTAGGTCCATCTCGAT 59.959 54.545 0.00 0.00 40.94 3.59
8130 12435 1.422024 CCTCCTCTAGGTCCATCTCGA 59.578 57.143 0.00 0.00 40.94 4.04
8131 12436 1.546773 CCCTCCTCTAGGTCCATCTCG 60.547 61.905 0.00 0.00 44.90 4.04
8132 12437 1.203125 CCCCTCCTCTAGGTCCATCTC 60.203 61.905 0.00 0.00 44.90 2.75
8133 12438 0.863956 CCCCTCCTCTAGGTCCATCT 59.136 60.000 0.00 0.00 44.90 2.90
8134 12439 0.563672 ACCCCTCCTCTAGGTCCATC 59.436 60.000 0.00 0.00 44.90 3.51
8135 12440 0.266152 CACCCCTCCTCTAGGTCCAT 59.734 60.000 0.00 0.00 44.90 3.41
8136 12441 0.854039 TCACCCCTCCTCTAGGTCCA 60.854 60.000 0.00 0.00 44.90 4.02
8137 12442 0.338814 TTCACCCCTCCTCTAGGTCC 59.661 60.000 0.00 0.00 44.90 4.46
8138 12443 2.480642 ATTCACCCCTCCTCTAGGTC 57.519 55.000 0.00 0.00 44.90 3.85
8139 12444 2.180308 CCTATTCACCCCTCCTCTAGGT 59.820 54.545 0.00 0.00 44.90 3.08
8140 12445 2.180308 ACCTATTCACCCCTCCTCTAGG 59.820 54.545 0.00 0.00 46.09 3.02
8141 12446 3.621682 ACCTATTCACCCCTCCTCTAG 57.378 52.381 0.00 0.00 0.00 2.43
8142 12447 3.795545 TGTACCTATTCACCCCTCCTCTA 59.204 47.826 0.00 0.00 0.00 2.43
8143 12448 2.590611 TGTACCTATTCACCCCTCCTCT 59.409 50.000 0.00 0.00 0.00 3.69
8144 12449 3.042059 TGTACCTATTCACCCCTCCTC 57.958 52.381 0.00 0.00 0.00 3.71
8145 12450 3.502051 TTGTACCTATTCACCCCTCCT 57.498 47.619 0.00 0.00 0.00 3.69
8146 12451 4.790718 AATTGTACCTATTCACCCCTCC 57.209 45.455 0.00 0.00 0.00 4.30
8147 12452 6.243216 TGTAATTGTACCTATTCACCCCTC 57.757 41.667 0.00 0.00 0.00 4.30
8148 12453 6.645884 TTGTAATTGTACCTATTCACCCCT 57.354 37.500 0.00 0.00 0.00 4.79
8149 12454 7.891498 ATTTGTAATTGTACCTATTCACCCC 57.109 36.000 0.00 0.00 0.00 4.95
8182 12487 8.188139 GCATTAGTGCCTAAAATTGCTAAGTAA 58.812 33.333 0.00 0.00 45.76 2.24
8183 12488 7.703328 GCATTAGTGCCTAAAATTGCTAAGTA 58.297 34.615 0.00 0.00 45.76 2.24
8184 12489 6.564328 GCATTAGTGCCTAAAATTGCTAAGT 58.436 36.000 0.00 0.00 45.76 2.24
8200 12505 5.056480 TCACCTTCATATTCCGCATTAGTG 58.944 41.667 0.00 0.00 0.00 2.74
8201 12506 5.290493 TCACCTTCATATTCCGCATTAGT 57.710 39.130 0.00 0.00 0.00 2.24
8202 12507 4.153117 GCTCACCTTCATATTCCGCATTAG 59.847 45.833 0.00 0.00 0.00 1.73
8203 12508 4.065088 GCTCACCTTCATATTCCGCATTA 58.935 43.478 0.00 0.00 0.00 1.90
8204 12509 2.880890 GCTCACCTTCATATTCCGCATT 59.119 45.455 0.00 0.00 0.00 3.56
8205 12510 2.498167 GCTCACCTTCATATTCCGCAT 58.502 47.619 0.00 0.00 0.00 4.73
8206 12511 1.475034 GGCTCACCTTCATATTCCGCA 60.475 52.381 0.00 0.00 0.00 5.69
8207 12512 1.230324 GGCTCACCTTCATATTCCGC 58.770 55.000 0.00 0.00 0.00 5.54
8219 12524 2.558359 ACTTGCAATTGTTAGGCTCACC 59.442 45.455 7.40 0.00 0.00 4.02
8220 12525 3.004734 ACACTTGCAATTGTTAGGCTCAC 59.995 43.478 15.99 0.00 0.00 3.51
8221 12526 3.221771 ACACTTGCAATTGTTAGGCTCA 58.778 40.909 15.99 0.00 0.00 4.26
8222 12527 3.923017 ACACTTGCAATTGTTAGGCTC 57.077 42.857 15.99 0.00 0.00 4.70
8223 12528 4.398319 ACTACACTTGCAATTGTTAGGCT 58.602 39.130 25.02 4.41 0.00 4.58
8224 12529 4.766404 ACTACACTTGCAATTGTTAGGC 57.234 40.909 25.02 0.00 0.00 3.93
8225 12530 8.542497 TTAGTACTACACTTGCAATTGTTAGG 57.458 34.615 25.02 17.51 38.80 2.69
8226 12531 9.204570 ACTTAGTACTACACTTGCAATTGTTAG 57.795 33.333 25.02 20.21 38.80 2.34
8227 12532 8.984764 CACTTAGTACTACACTTGCAATTGTTA 58.015 33.333 25.02 11.58 38.80 2.41
8228 12533 7.519970 GCACTTAGTACTACACTTGCAATTGTT 60.520 37.037 25.02 12.51 38.08 2.83
8229 12534 6.073222 GCACTTAGTACTACACTTGCAATTGT 60.073 38.462 23.64 23.64 38.08 2.71
8230 12535 6.147821 AGCACTTAGTACTACACTTGCAATTG 59.852 38.462 14.64 14.64 39.83 2.32
8231 12536 6.231211 AGCACTTAGTACTACACTTGCAATT 58.769 36.000 19.02 0.00 39.83 2.32
8232 12537 5.794894 AGCACTTAGTACTACACTTGCAAT 58.205 37.500 19.02 0.00 39.83 3.56
8233 12538 5.209818 AGCACTTAGTACTACACTTGCAA 57.790 39.130 19.02 0.00 39.83 4.08
8234 12539 4.866508 AGCACTTAGTACTACACTTGCA 57.133 40.909 19.02 0.00 39.83 4.08
8235 12540 5.288952 GCTTAGCACTTAGTACTACACTTGC 59.711 44.000 0.91 8.78 38.35 4.01
8236 12541 6.387465 TGCTTAGCACTTAGTACTACACTTG 58.613 40.000 1.39 0.00 34.25 3.16
8237 12542 6.585695 TGCTTAGCACTTAGTACTACACTT 57.414 37.500 1.39 0.00 34.25 3.16
8238 12543 6.433404 TCTTGCTTAGCACTTAGTACTACACT 59.567 38.462 6.34 0.66 38.71 3.55
8239 12544 6.618811 TCTTGCTTAGCACTTAGTACTACAC 58.381 40.000 6.34 0.00 38.71 2.90
8240 12545 6.829229 TCTTGCTTAGCACTTAGTACTACA 57.171 37.500 6.34 0.00 38.71 2.74
8241 12546 9.453325 CTTATCTTGCTTAGCACTTAGTACTAC 57.547 37.037 6.34 0.00 38.71 2.73
8242 12547 8.136165 GCTTATCTTGCTTAGCACTTAGTACTA 58.864 37.037 6.34 0.00 38.71 1.82
8243 12548 6.981559 GCTTATCTTGCTTAGCACTTAGTACT 59.018 38.462 6.34 0.00 38.71 2.73
8244 12549 6.757010 TGCTTATCTTGCTTAGCACTTAGTAC 59.243 38.462 6.34 0.00 38.71 2.73
8245 12550 6.873997 TGCTTATCTTGCTTAGCACTTAGTA 58.126 36.000 6.34 0.00 38.71 1.82
8246 12551 5.734720 TGCTTATCTTGCTTAGCACTTAGT 58.265 37.500 6.34 0.00 38.71 2.24
8247 12552 6.668541 TTGCTTATCTTGCTTAGCACTTAG 57.331 37.500 6.34 1.69 42.78 2.18
8248 12553 7.630242 ATTTGCTTATCTTGCTTAGCACTTA 57.370 32.000 6.34 0.00 42.78 2.24
8249 12554 5.964958 TTTGCTTATCTTGCTTAGCACTT 57.035 34.783 6.34 0.00 42.78 3.16
8250 12555 6.038714 GGTATTTGCTTATCTTGCTTAGCACT 59.961 38.462 6.34 0.00 42.78 4.40
8251 12556 6.183360 TGGTATTTGCTTATCTTGCTTAGCAC 60.183 38.462 6.34 0.00 42.78 4.40
8252 12557 5.885352 TGGTATTTGCTTATCTTGCTTAGCA 59.115 36.000 1.39 1.39 41.51 3.49
8253 12558 6.183360 TGTGGTATTTGCTTATCTTGCTTAGC 60.183 38.462 0.00 0.00 0.00 3.09
8254 12559 7.320443 TGTGGTATTTGCTTATCTTGCTTAG 57.680 36.000 0.00 0.00 0.00 2.18
8255 12560 7.393234 ACTTGTGGTATTTGCTTATCTTGCTTA 59.607 33.333 0.00 0.00 0.00 3.09
8256 12561 6.209391 ACTTGTGGTATTTGCTTATCTTGCTT 59.791 34.615 0.00 0.00 0.00 3.91
8257 12562 5.711976 ACTTGTGGTATTTGCTTATCTTGCT 59.288 36.000 0.00 0.00 0.00 3.91
8258 12563 5.954335 ACTTGTGGTATTTGCTTATCTTGC 58.046 37.500 0.00 0.00 0.00 4.01
8259 12564 8.677300 ACATACTTGTGGTATTTGCTTATCTTG 58.323 33.333 0.00 0.00 38.92 3.02
8260 12565 8.807948 ACATACTTGTGGTATTTGCTTATCTT 57.192 30.769 0.00 0.00 38.92 2.40
8261 12566 9.899661 TTACATACTTGTGGTATTTGCTTATCT 57.100 29.630 0.00 0.00 38.92 1.98
8263 12568 9.681062 ACTTACATACTTGTGGTATTTGCTTAT 57.319 29.630 0.00 0.00 38.92 1.73
8265 12570 7.996098 ACTTACATACTTGTGGTATTTGCTT 57.004 32.000 0.00 0.00 38.92 3.91
8266 12571 9.162764 CTTACTTACATACTTGTGGTATTTGCT 57.837 33.333 0.00 0.00 38.92 3.91
8267 12572 7.908601 GCTTACTTACATACTTGTGGTATTTGC 59.091 37.037 0.00 0.00 38.92 3.68
8268 12573 8.941977 TGCTTACTTACATACTTGTGGTATTTG 58.058 33.333 0.00 0.00 38.92 2.32
8269 12574 9.509956 TTGCTTACTTACATACTTGTGGTATTT 57.490 29.630 0.00 0.00 38.92 1.40
8270 12575 9.162764 CTTGCTTACTTACATACTTGTGGTATT 57.837 33.333 0.00 0.00 38.92 1.89
8271 12576 7.280205 GCTTGCTTACTTACATACTTGTGGTAT 59.720 37.037 0.00 0.00 41.38 2.73
8272 12577 6.592607 GCTTGCTTACTTACATACTTGTGGTA 59.407 38.462 0.00 0.00 36.53 3.25
8273 12578 5.411669 GCTTGCTTACTTACATACTTGTGGT 59.588 40.000 0.00 0.00 36.53 4.16
8274 12579 5.411361 TGCTTGCTTACTTACATACTTGTGG 59.589 40.000 0.00 0.00 36.53 4.17
8275 12580 6.073276 TGTGCTTGCTTACTTACATACTTGTG 60.073 38.462 0.00 0.00 36.53 3.33
8276 12581 5.995282 TGTGCTTGCTTACTTACATACTTGT 59.005 36.000 0.00 0.00 39.98 3.16
8277 12582 6.480524 TGTGCTTGCTTACTTACATACTTG 57.519 37.500 0.00 0.00 0.00 3.16
8278 12583 7.687941 ATTGTGCTTGCTTACTTACATACTT 57.312 32.000 0.00 0.00 0.00 2.24
8279 12584 8.830580 CATATTGTGCTTGCTTACTTACATACT 58.169 33.333 0.00 0.00 0.00 2.12
8280 12585 8.826710 TCATATTGTGCTTGCTTACTTACATAC 58.173 33.333 0.00 0.00 0.00 2.39
8281 12586 8.956533 TCATATTGTGCTTGCTTACTTACATA 57.043 30.769 0.00 0.00 0.00 2.29
8282 12587 7.864108 TCATATTGTGCTTGCTTACTTACAT 57.136 32.000 0.00 0.00 0.00 2.29
8283 12588 7.864108 ATCATATTGTGCTTGCTTACTTACA 57.136 32.000 0.00 0.00 0.00 2.41
8291 12596 8.790718 CCTTTCTTATATCATATTGTGCTTGCT 58.209 33.333 0.00 0.00 0.00 3.91
8292 12597 8.025445 CCCTTTCTTATATCATATTGTGCTTGC 58.975 37.037 0.00 0.00 0.00 4.01
8293 12598 8.025445 GCCCTTTCTTATATCATATTGTGCTTG 58.975 37.037 0.00 0.00 0.00 4.01
8294 12599 7.946776 AGCCCTTTCTTATATCATATTGTGCTT 59.053 33.333 0.00 0.00 0.00 3.91
8295 12600 7.465116 AGCCCTTTCTTATATCATATTGTGCT 58.535 34.615 0.00 0.00 0.00 4.40
8296 12601 7.693969 AGCCCTTTCTTATATCATATTGTGC 57.306 36.000 0.00 0.00 0.00 4.57
8302 12607 9.601810 TGTCTCTTAGCCCTTTCTTATATCATA 57.398 33.333 0.00 0.00 0.00 2.15
8303 12608 8.497910 TGTCTCTTAGCCCTTTCTTATATCAT 57.502 34.615 0.00 0.00 0.00 2.45
8304 12609 7.914427 TGTCTCTTAGCCCTTTCTTATATCA 57.086 36.000 0.00 0.00 0.00 2.15
8305 12610 9.785982 AATTGTCTCTTAGCCCTTTCTTATATC 57.214 33.333 0.00 0.00 0.00 1.63
8308 12613 9.397280 GTTAATTGTCTCTTAGCCCTTTCTTAT 57.603 33.333 0.00 0.00 0.00 1.73
8309 12614 7.827729 GGTTAATTGTCTCTTAGCCCTTTCTTA 59.172 37.037 0.00 0.00 0.00 2.10
8310 12615 6.659668 GGTTAATTGTCTCTTAGCCCTTTCTT 59.340 38.462 0.00 0.00 0.00 2.52
8311 12616 6.181190 GGTTAATTGTCTCTTAGCCCTTTCT 58.819 40.000 0.00 0.00 0.00 2.52
8312 12617 5.944007 TGGTTAATTGTCTCTTAGCCCTTTC 59.056 40.000 0.00 0.00 30.74 2.62
8313 12618 5.710567 GTGGTTAATTGTCTCTTAGCCCTTT 59.289 40.000 0.00 0.00 30.74 3.11
8314 12619 5.222048 TGTGGTTAATTGTCTCTTAGCCCTT 60.222 40.000 0.00 0.00 30.74 3.95
8315 12620 4.288626 TGTGGTTAATTGTCTCTTAGCCCT 59.711 41.667 0.00 0.00 30.74 5.19
8316 12621 4.585879 TGTGGTTAATTGTCTCTTAGCCC 58.414 43.478 0.00 0.00 30.74 5.19
8317 12622 5.705905 ACTTGTGGTTAATTGTCTCTTAGCC 59.294 40.000 0.00 0.00 32.00 3.93
8318 12623 6.803154 ACTTGTGGTTAATTGTCTCTTAGC 57.197 37.500 0.00 0.00 0.00 3.09
8319 12624 9.360093 CTCTACTTGTGGTTAATTGTCTCTTAG 57.640 37.037 0.00 0.00 0.00 2.18
8320 12625 9.085645 TCTCTACTTGTGGTTAATTGTCTCTTA 57.914 33.333 0.00 0.00 0.00 2.10
8321 12626 7.963532 TCTCTACTTGTGGTTAATTGTCTCTT 58.036 34.615 0.00 0.00 0.00 2.85
8322 12627 7.233757 ACTCTCTACTTGTGGTTAATTGTCTCT 59.766 37.037 0.00 0.00 0.00 3.10
8323 12628 7.379750 ACTCTCTACTTGTGGTTAATTGTCTC 58.620 38.462 0.00 0.00 0.00 3.36
8324 12629 7.304497 ACTCTCTACTTGTGGTTAATTGTCT 57.696 36.000 0.00 0.00 0.00 3.41
8325 12630 7.964604 AACTCTCTACTTGTGGTTAATTGTC 57.035 36.000 0.00 0.00 0.00 3.18
8326 12631 8.095169 CCTAACTCTCTACTTGTGGTTAATTGT 58.905 37.037 0.00 0.00 0.00 2.71
8327 12632 7.549488 CCCTAACTCTCTACTTGTGGTTAATTG 59.451 40.741 0.00 0.00 0.00 2.32
8328 12633 7.237055 ACCCTAACTCTCTACTTGTGGTTAATT 59.763 37.037 0.00 0.00 0.00 1.40
8329 12634 6.729569 ACCCTAACTCTCTACTTGTGGTTAAT 59.270 38.462 0.00 0.00 0.00 1.40
8330 12635 6.080009 ACCCTAACTCTCTACTTGTGGTTAA 58.920 40.000 0.00 0.00 0.00 2.01
8331 12636 5.648247 ACCCTAACTCTCTACTTGTGGTTA 58.352 41.667 0.00 0.00 0.00 2.85
8332 12637 4.490706 ACCCTAACTCTCTACTTGTGGTT 58.509 43.478 0.00 0.00 0.00 3.67
8333 12638 4.129317 ACCCTAACTCTCTACTTGTGGT 57.871 45.455 0.00 0.00 0.00 4.16
8334 12639 5.127356 CCTAACCCTAACTCTCTACTTGTGG 59.873 48.000 0.00 0.00 0.00 4.17
8335 12640 5.950549 TCCTAACCCTAACTCTCTACTTGTG 59.049 44.000 0.00 0.00 0.00 3.33
8336 12641 6.150034 TCCTAACCCTAACTCTCTACTTGT 57.850 41.667 0.00 0.00 0.00 3.16
8337 12642 7.663043 ATTCCTAACCCTAACTCTCTACTTG 57.337 40.000 0.00 0.00 0.00 3.16
8338 12643 9.199645 GTTATTCCTAACCCTAACTCTCTACTT 57.800 37.037 0.00 0.00 32.63 2.24
8339 12644 8.765488 GTTATTCCTAACCCTAACTCTCTACT 57.235 38.462 0.00 0.00 32.63 2.57
8353 12658 2.606272 CGGAGTTGCGGTTATTCCTAAC 59.394 50.000 0.00 0.00 37.16 2.34
8354 12659 2.419021 CCGGAGTTGCGGTTATTCCTAA 60.419 50.000 0.00 0.00 0.00 2.69
8355 12660 1.137479 CCGGAGTTGCGGTTATTCCTA 59.863 52.381 0.00 0.00 0.00 2.94
8356 12661 0.107848 CCGGAGTTGCGGTTATTCCT 60.108 55.000 0.00 0.00 0.00 3.36
8357 12662 1.093496 CCCGGAGTTGCGGTTATTCC 61.093 60.000 0.73 0.00 0.00 3.01
8358 12663 0.108041 TCCCGGAGTTGCGGTTATTC 60.108 55.000 0.73 0.00 0.00 1.75
8359 12664 0.107848 CTCCCGGAGTTGCGGTTATT 60.108 55.000 0.73 0.00 0.00 1.40
8360 12665 0.974010 TCTCCCGGAGTTGCGGTTAT 60.974 55.000 14.36 0.00 0.00 1.89
8361 12666 1.607178 TCTCCCGGAGTTGCGGTTA 60.607 57.895 14.36 0.00 0.00 2.85
8362 12667 2.920912 TCTCCCGGAGTTGCGGTT 60.921 61.111 14.36 0.00 0.00 4.44
8363 12668 3.692406 GTCTCCCGGAGTTGCGGT 61.692 66.667 14.36 0.00 0.00 5.68
8364 12669 4.796231 CGTCTCCCGGAGTTGCGG 62.796 72.222 14.36 4.98 0.00 5.69
8365 12670 3.685214 CTCGTCTCCCGGAGTTGCG 62.685 68.421 14.36 15.85 37.11 4.85
8366 12671 2.182030 CTCGTCTCCCGGAGTTGC 59.818 66.667 14.36 5.52 37.11 4.17
8367 12672 1.038130 ATCCTCGTCTCCCGGAGTTG 61.038 60.000 14.36 8.15 37.11 3.16
8368 12673 1.038130 CATCCTCGTCTCCCGGAGTT 61.038 60.000 14.36 0.00 37.11 3.01
8369 12674 1.454111 CATCCTCGTCTCCCGGAGT 60.454 63.158 14.36 0.00 37.11 3.85
8370 12675 0.179026 TACATCCTCGTCTCCCGGAG 60.179 60.000 8.30 8.30 37.11 4.63
8371 12676 0.477204 ATACATCCTCGTCTCCCGGA 59.523 55.000 0.73 0.00 37.11 5.14
8372 12677 0.598562 CATACATCCTCGTCTCCCGG 59.401 60.000 0.00 0.00 37.11 5.73
8373 12678 0.039074 GCATACATCCTCGTCTCCCG 60.039 60.000 0.00 0.00 38.13 5.14
8374 12679 0.318762 GGCATACATCCTCGTCTCCC 59.681 60.000 0.00 0.00 0.00 4.30
8375 12680 0.039074 CGGCATACATCCTCGTCTCC 60.039 60.000 0.00 0.00 0.00 3.71
8376 12681 0.952280 TCGGCATACATCCTCGTCTC 59.048 55.000 0.00 0.00 0.00 3.36
8377 12682 1.270826 CATCGGCATACATCCTCGTCT 59.729 52.381 0.00 0.00 0.00 4.18
8378 12683 1.000163 ACATCGGCATACATCCTCGTC 60.000 52.381 0.00 0.00 0.00 4.20
8379 12684 1.040646 ACATCGGCATACATCCTCGT 58.959 50.000 0.00 0.00 0.00 4.18
8380 12685 2.061773 GAACATCGGCATACATCCTCG 58.938 52.381 0.00 0.00 0.00 4.63
8381 12686 2.802816 GTGAACATCGGCATACATCCTC 59.197 50.000 0.00 0.00 0.00 3.71
8382 12687 2.435805 AGTGAACATCGGCATACATCCT 59.564 45.455 0.00 0.00 0.00 3.24
8383 12688 2.838736 AGTGAACATCGGCATACATCC 58.161 47.619 0.00 0.00 0.00 3.51
8384 12689 3.248602 GGAAGTGAACATCGGCATACATC 59.751 47.826 0.00 0.00 0.00 3.06
8385 12690 3.206150 GGAAGTGAACATCGGCATACAT 58.794 45.455 0.00 0.00 0.00 2.29
8386 12691 2.627945 GGAAGTGAACATCGGCATACA 58.372 47.619 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.