Multiple sequence alignment - TraesCS5D01G129100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G129100 chr5D 100.000 4673 0 0 1 4673 202394929 202399601 0.000000e+00 8630.0
1 TraesCS5D01G129100 chr5D 94.186 258 13 2 4413 4668 279292863 279293120 4.380000e-105 392.0
2 TraesCS5D01G129100 chr5D 94.466 253 14 0 4417 4669 9234385 9234133 1.580000e-104 390.0
3 TraesCS5D01G129100 chr5B 96.968 2935 71 11 1235 4165 209291779 209288859 0.000000e+00 4911.0
4 TraesCS5D01G129100 chr5B 90.896 703 56 2 1 696 209295185 209294484 0.000000e+00 937.0
5 TraesCS5D01G129100 chr5B 89.688 320 26 4 908 1226 209292336 209292023 7.280000e-108 401.0
6 TraesCS5D01G129100 chr5B 93.860 228 14 0 691 918 209294454 209294227 1.240000e-90 344.0
7 TraesCS5D01G129100 chr5B 82.558 172 25 5 97 266 317444940 317445108 3.770000e-31 147.0
8 TraesCS5D01G129100 chr5B 82.065 184 22 10 97 275 317579278 317579101 3.770000e-31 147.0
9 TraesCS5D01G129100 chr5B 82.081 173 25 6 97 266 486494947 486495116 4.870000e-30 143.0
10 TraesCS5D01G129100 chr5A 93.165 1507 73 11 917 2398 224387499 224389000 0.000000e+00 2185.0
11 TraesCS5D01G129100 chr5A 93.915 871 43 5 2391 3259 224404772 224405634 0.000000e+00 1306.0
12 TraesCS5D01G129100 chr5A 90.469 703 58 5 1 696 224385590 224386290 0.000000e+00 918.0
13 TraesCS5D01G129100 chr5A 90.193 724 35 15 3705 4419 224410258 224410954 0.000000e+00 911.0
14 TraesCS5D01G129100 chr5A 93.103 377 25 1 3299 3675 224409886 224410261 6.830000e-153 551.0
15 TraesCS5D01G129100 chr5A 93.304 224 15 0 688 911 224386317 224386540 9.690000e-87 331.0
16 TraesCS5D01G129100 chr2D 95.686 255 11 0 4414 4668 558801624 558801370 1.210000e-110 411.0
17 TraesCS5D01G129100 chr2D 94.422 251 14 0 4418 4668 315859249 315858999 2.040000e-103 387.0
18 TraesCS5D01G129100 chr6B 95.219 251 11 1 4418 4668 536831433 536831184 3.390000e-106 396.0
19 TraesCS5D01G129100 chr6B 93.359 256 17 0 4413 4668 214870340 214870595 3.410000e-101 379.0
20 TraesCS5D01G129100 chr4B 94.422 251 14 0 4418 4668 15428369 15428119 2.040000e-103 387.0
21 TraesCS5D01G129100 chr4B 80.612 196 32 6 81 273 195521299 195521107 3.770000e-31 147.0
22 TraesCS5D01G129100 chr4B 80.513 195 34 4 81 273 195550867 195550675 3.770000e-31 147.0
23 TraesCS5D01G129100 chr4B 90.265 113 5 1 1655 1761 669915264 669915376 4.870000e-30 143.0
24 TraesCS5D01G129100 chr4B 89.908 109 9 1 1655 1761 669913600 669913708 6.310000e-29 139.0
25 TraesCS5D01G129100 chr6D 94.400 250 14 0 4419 4668 410373520 410373769 7.340000e-103 385.0
26 TraesCS5D01G129100 chr6D 80.420 286 40 13 1 273 465644175 465644457 2.200000e-48 204.0
27 TraesCS5D01G129100 chr6D 90.000 50 5 0 692 741 155599103 155599152 1.090000e-06 65.8
28 TraesCS5D01G129100 chr2A 92.105 266 19 2 4405 4668 606519047 606519312 1.590000e-99 374.0
29 TraesCS5D01G129100 chr6A 82.659 173 26 3 100 272 200670130 200669962 2.910000e-32 150.0
30 TraesCS5D01G129100 chr7A 77.729 229 45 5 3526 3753 170901211 170900988 8.160000e-28 135.0
31 TraesCS5D01G129100 chr1D 89.286 84 9 0 3537 3620 352546441 352546358 6.390000e-19 106.0
32 TraesCS5D01G129100 chr1B 82.143 112 20 0 3534 3645 474758156 474758267 3.850000e-16 97.1
33 TraesCS5D01G129100 chr4A 90.769 65 6 0 632 696 593828794 593828730 2.320000e-13 87.9
34 TraesCS5D01G129100 chr3B 76.875 160 34 3 692 850 675609237 675609394 2.320000e-13 87.9
35 TraesCS5D01G129100 chr2B 75.168 149 27 8 550 695 376118417 376118276 1.400000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G129100 chr5D 202394929 202399601 4672 False 8630.000000 8630 100.000000 1 4673 1 chr5D.!!$F1 4672
1 TraesCS5D01G129100 chr5B 209288859 209295185 6326 True 1648.250000 4911 92.853000 1 4165 4 chr5B.!!$R2 4164
2 TraesCS5D01G129100 chr5A 224404772 224405634 862 False 1306.000000 1306 93.915000 2391 3259 1 chr5A.!!$F1 868
3 TraesCS5D01G129100 chr5A 224385590 224389000 3410 False 1144.666667 2185 92.312667 1 2398 3 chr5A.!!$F2 2397
4 TraesCS5D01G129100 chr5A 224409886 224410954 1068 False 731.000000 911 91.648000 3299 4419 2 chr5A.!!$F3 1120

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
323 331 0.813184 CCACGATCTTTGCCTTGCAT 59.187 50.0 0.00 0.00 38.76 3.96 F
1187 3277 0.180171 TTGCGTACTGATGGATGGGG 59.820 55.0 0.00 0.00 0.00 4.96 F
1194 3284 0.109342 CTGATGGATGGGGGCTACAC 59.891 60.0 0.00 0.00 0.00 2.90 F
1195 3285 0.327480 TGATGGATGGGGGCTACACT 60.327 55.0 0.00 0.00 0.00 3.55 F
1928 4263 0.533085 GGCGGTCTAAGAGGATTGCC 60.533 60.0 0.00 0.00 33.57 4.52 F
1985 4320 1.135699 CGGCTAAAGCAATTGCAGCG 61.136 55.0 30.89 20.73 45.16 5.18 F
3401 5771 0.893727 GTGGGGAATTTCGGTGCTGT 60.894 55.0 0.00 0.00 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1192 3282 0.109458 TTACCTCTGCGCGTGTAGTG 60.109 55.000 13.85 11.22 0.00 2.74 R
2326 4694 0.236711 CACCTTGCTGCAACTTCTCG 59.763 55.000 11.69 0.30 0.00 4.04 R
2595 4963 1.702567 GGGTCCCCTCCTATTTCCCAT 60.703 57.143 0.00 0.00 34.20 4.00 R
3177 5547 2.284995 GGCCTCCTGAGTCCCACT 60.285 66.667 0.00 0.00 0.00 4.00 R
3377 5747 1.132262 CACCGAAATTCCCCACATTCG 59.868 52.381 0.00 0.00 43.04 3.34 R
3411 5781 1.151668 CAGCTCCAACAACCTTCTCG 58.848 55.000 0.00 0.00 0.00 4.04 R
4205 6583 1.086696 ACGGGTGATGCATTTTCGAG 58.913 50.000 0.00 0.00 0.00 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 76 2.438411 CGAGGGATAAGGCTCGTAGAT 58.562 52.381 0.00 0.00 33.89 1.98
95 103 6.486253 ACATTCATACACACATGAACTCAC 57.514 37.500 0.00 0.00 45.22 3.51
152 160 2.510768 ATACGATCAAAGGAGGACGC 57.489 50.000 0.00 0.00 0.00 5.19
169 177 3.321111 GGACGCAGGGTATTATCTCTTCA 59.679 47.826 0.00 0.00 0.00 3.02
182 190 2.751166 CTCTTCAAGAGAGCCCGAAA 57.249 50.000 8.98 0.00 45.07 3.46
273 281 1.168714 GCTGGGTTTGACTCCATCAC 58.831 55.000 0.00 0.00 36.92 3.06
310 318 2.579201 CTCGAGGGTTGCCACGAT 59.421 61.111 3.91 0.00 34.74 3.73
313 321 1.079127 CGAGGGTTGCCACGATCTT 60.079 57.895 0.00 0.00 0.00 2.40
323 331 0.813184 CCACGATCTTTGCCTTGCAT 59.187 50.000 0.00 0.00 38.76 3.96
373 381 1.067582 GCCGTATGCGCTTACCTCT 59.932 57.895 23.17 0.00 36.67 3.69
450 458 1.805945 CCGAGTTGGTGCGCTAGAC 60.806 63.158 9.73 0.00 0.00 2.59
469 477 2.672996 GACCACACCGCAGCCATT 60.673 61.111 0.00 0.00 0.00 3.16
498 506 4.101790 CAACCACACCGCATCCGC 62.102 66.667 0.00 0.00 0.00 5.54
547 555 3.407967 GCCCCGGTGGATCCAAGA 61.408 66.667 18.20 0.00 35.39 3.02
582 590 2.186826 CAATGGATTCCCGCCGGAC 61.187 63.158 5.05 0.00 38.14 4.79
588 596 1.683418 GATTCCCGCCGGACCTAGTT 61.683 60.000 5.05 0.00 38.14 2.24
595 603 1.008767 CCGGACCTAGTTCGATCGC 60.009 63.158 11.09 0.00 36.53 4.58
598 606 1.657794 GACCTAGTTCGATCGCGGC 60.658 63.158 11.09 2.70 38.28 6.53
650 658 2.797278 ATGCGGACGACCATCTCCC 61.797 63.158 4.48 0.00 35.59 4.30
749 792 1.112950 GAGTGGAGTGGCTAGGGTAC 58.887 60.000 0.00 0.00 0.00 3.34
971 3061 6.122277 ACTGAATCATCCGTCCAAACATATT 58.878 36.000 0.00 0.00 0.00 1.28
972 3062 6.038603 ACTGAATCATCCGTCCAAACATATTG 59.961 38.462 0.00 0.00 0.00 1.90
1021 3111 6.436843 AGTTATGAAAACAATCGGGCTTAG 57.563 37.500 0.00 0.00 0.00 2.18
1035 3125 2.188817 GGCTTAGAGGAGAAGGAACCA 58.811 52.381 0.00 0.00 0.00 3.67
1087 3177 1.614850 GGAAACAACCGGGCTTATGGA 60.615 52.381 6.32 0.00 0.00 3.41
1127 3217 8.296713 TCGAAACCCAAAAATTATCTCTTTCAG 58.703 33.333 0.00 0.00 0.00 3.02
1187 3277 0.180171 TTGCGTACTGATGGATGGGG 59.820 55.000 0.00 0.00 0.00 4.96
1188 3278 1.071471 GCGTACTGATGGATGGGGG 59.929 63.158 0.00 0.00 0.00 5.40
1189 3279 1.071471 CGTACTGATGGATGGGGGC 59.929 63.158 0.00 0.00 0.00 5.80
1190 3280 1.410850 CGTACTGATGGATGGGGGCT 61.411 60.000 0.00 0.00 0.00 5.19
1191 3281 1.729586 GTACTGATGGATGGGGGCTA 58.270 55.000 0.00 0.00 0.00 3.93
1192 3282 1.348036 GTACTGATGGATGGGGGCTAC 59.652 57.143 0.00 0.00 0.00 3.58
1193 3283 0.327480 ACTGATGGATGGGGGCTACA 60.327 55.000 0.00 0.00 0.00 2.74
1194 3284 0.109342 CTGATGGATGGGGGCTACAC 59.891 60.000 0.00 0.00 0.00 2.90
1195 3285 0.327480 TGATGGATGGGGGCTACACT 60.327 55.000 0.00 0.00 0.00 3.55
1228 3552 4.328536 AGGTAAGAAAACACACACACACA 58.671 39.130 0.00 0.00 0.00 3.72
1229 3553 4.155280 AGGTAAGAAAACACACACACACAC 59.845 41.667 0.00 0.00 0.00 3.82
1230 3554 4.083217 GGTAAGAAAACACACACACACACA 60.083 41.667 0.00 0.00 0.00 3.72
1258 3584 2.362889 CAGCAATCCCCACACCCC 60.363 66.667 0.00 0.00 0.00 4.95
1419 3745 4.807039 CCGCCCCTAACACCGACG 62.807 72.222 0.00 0.00 0.00 5.12
1763 4089 2.436646 CGGGTCATGTCACCAGCC 60.437 66.667 5.97 0.00 38.32 4.85
1928 4263 0.533085 GGCGGTCTAAGAGGATTGCC 60.533 60.000 0.00 0.00 33.57 4.52
1985 4320 1.135699 CGGCTAAAGCAATTGCAGCG 61.136 55.000 30.89 20.73 45.16 5.18
2129 4485 5.372343 TGGATAGTTCTGTGCATATGGTT 57.628 39.130 4.56 0.00 0.00 3.67
2130 4486 5.368145 TGGATAGTTCTGTGCATATGGTTC 58.632 41.667 4.56 0.00 0.00 3.62
2131 4487 5.130975 TGGATAGTTCTGTGCATATGGTTCT 59.869 40.000 4.56 0.00 0.00 3.01
2132 4488 5.698545 GGATAGTTCTGTGCATATGGTTCTC 59.301 44.000 4.56 0.00 0.00 2.87
2133 4489 4.558226 AGTTCTGTGCATATGGTTCTCA 57.442 40.909 4.56 0.00 0.00 3.27
2134 4490 4.910195 AGTTCTGTGCATATGGTTCTCAA 58.090 39.130 4.56 0.00 0.00 3.02
2135 4491 5.503927 AGTTCTGTGCATATGGTTCTCAAT 58.496 37.500 4.56 0.00 0.00 2.57
2136 4492 5.356190 AGTTCTGTGCATATGGTTCTCAATG 59.644 40.000 4.56 0.00 0.00 2.82
2137 4493 3.628942 TCTGTGCATATGGTTCTCAATGC 59.371 43.478 4.56 0.00 43.92 3.56
2141 4497 4.374843 GCATATGGTTCTCAATGCACAA 57.625 40.909 4.56 0.00 43.30 3.33
2142 4498 4.746729 GCATATGGTTCTCAATGCACAAA 58.253 39.130 4.56 0.00 43.30 2.83
2143 4499 5.353938 GCATATGGTTCTCAATGCACAAAT 58.646 37.500 4.56 0.00 43.30 2.32
2144 4500 5.813672 GCATATGGTTCTCAATGCACAAATT 59.186 36.000 4.56 0.00 43.30 1.82
2145 4501 6.237996 GCATATGGTTCTCAATGCACAAATTG 60.238 38.462 4.56 0.00 43.30 2.32
2146 4502 3.992643 TGGTTCTCAATGCACAAATTGG 58.007 40.909 0.00 0.00 37.98 3.16
2147 4503 3.640498 TGGTTCTCAATGCACAAATTGGA 59.360 39.130 0.00 0.00 37.98 3.53
2148 4504 4.240096 GGTTCTCAATGCACAAATTGGAG 58.760 43.478 0.00 0.00 37.98 3.86
2149 4505 4.262164 GGTTCTCAATGCACAAATTGGAGT 60.262 41.667 0.00 0.00 37.98 3.85
2265 4633 3.079578 CAGACATGTGTTGAGGAGCAAT 58.920 45.455 1.15 0.00 39.03 3.56
2295 4663 8.367660 TGAAGATCAAGACTTAGGTAGAACAT 57.632 34.615 0.00 0.00 0.00 2.71
2595 4963 6.263168 GGAGGAAAATCACTTTGTCAAGAGAA 59.737 38.462 2.91 0.00 33.84 2.87
2888 5256 5.711976 AGTGGTGGTGAAATTCCTTCTAATG 59.288 40.000 0.00 0.00 34.86 1.90
3101 5471 2.205022 TGTTTGAAGCATCCAGGGAG 57.795 50.000 0.00 0.00 0.00 4.30
3177 5547 2.659016 CAGGCAGAAGCGGAGACA 59.341 61.111 0.00 0.00 43.41 3.41
3314 5684 2.416547 GGACGAGTGTTGATGGTGATTG 59.583 50.000 0.00 0.00 0.00 2.67
3377 5747 1.602377 CCGGTTGAGGTTGTTCAAGAC 59.398 52.381 0.00 0.00 37.72 3.01
3401 5771 0.893727 GTGGGGAATTTCGGTGCTGT 60.894 55.000 0.00 0.00 0.00 4.40
3411 5781 0.037326 TCGGTGCTGTTGATGGAGTC 60.037 55.000 0.00 0.00 0.00 3.36
3529 5899 3.430098 CGAGAATGCTGAGGATATAGGGC 60.430 52.174 0.00 0.00 0.00 5.19
3682 6052 3.692593 GGACCATGGTGTAATAAAGCGTT 59.307 43.478 25.52 0.00 0.00 4.84
4118 6496 9.295825 CTAACTAGTGTGATATCTCTCCAAGAT 57.704 37.037 3.98 0.00 46.70 2.40
4171 6549 7.755373 GGGTTGATGACTAAATCTTTTAACTGC 59.245 37.037 0.00 0.00 0.00 4.40
4186 6564 8.584157 TCTTTTAACTGCATTTTCCATATGTGT 58.416 29.630 1.24 0.00 0.00 3.72
4203 6581 4.782019 TGTGTTGATTTCACATAAGCCC 57.218 40.909 0.00 0.00 40.26 5.19
4204 6582 4.406456 TGTGTTGATTTCACATAAGCCCT 58.594 39.130 0.00 0.00 40.26 5.19
4205 6583 4.458989 TGTGTTGATTTCACATAAGCCCTC 59.541 41.667 0.00 0.00 40.26 4.30
4206 6584 4.702131 GTGTTGATTTCACATAAGCCCTCT 59.298 41.667 0.00 0.00 36.05 3.69
4207 6585 4.943705 TGTTGATTTCACATAAGCCCTCTC 59.056 41.667 0.00 0.00 0.00 3.20
4223 6602 1.328680 CTCTCGAAAATGCATCACCCG 59.671 52.381 0.00 1.95 0.00 5.28
4224 6603 1.086696 CTCGAAAATGCATCACCCGT 58.913 50.000 0.00 0.00 0.00 5.28
4225 6604 1.468520 CTCGAAAATGCATCACCCGTT 59.531 47.619 0.00 0.00 0.00 4.44
4226 6605 1.883275 TCGAAAATGCATCACCCGTTT 59.117 42.857 0.00 0.00 0.00 3.60
4227 6606 2.095466 TCGAAAATGCATCACCCGTTTC 60.095 45.455 0.00 4.42 0.00 2.78
4228 6607 2.095263 CGAAAATGCATCACCCGTTTCT 60.095 45.455 14.25 0.00 0.00 2.52
4229 6608 3.611530 CGAAAATGCATCACCCGTTTCTT 60.612 43.478 14.25 0.00 0.00 2.52
4230 6609 3.575965 AAATGCATCACCCGTTTCTTC 57.424 42.857 0.00 0.00 0.00 2.87
4231 6610 1.463674 ATGCATCACCCGTTTCTTCC 58.536 50.000 0.00 0.00 0.00 3.46
4244 6623 5.689961 CCCGTTTCTTCCATTAGTTTTTGTG 59.310 40.000 0.00 0.00 0.00 3.33
4326 6705 5.587388 ATGTTGACATGGAAATGACATCC 57.413 39.130 0.00 0.00 34.83 3.51
4330 6709 4.454678 TGACATGGAAATGACATCCTAGC 58.545 43.478 0.00 0.00 37.85 3.42
4359 6738 8.985315 ATGCATAGTTCTTTATGATTCCAGAA 57.015 30.769 0.00 0.00 33.75 3.02
4360 6739 8.985315 TGCATAGTTCTTTATGATTCCAGAAT 57.015 30.769 0.00 0.00 33.75 2.40
4361 6740 9.060347 TGCATAGTTCTTTATGATTCCAGAATC 57.940 33.333 12.51 12.51 45.55 2.52
4369 6748 9.426534 TCTTTATGATTCCAGAATCTCTACTCA 57.573 33.333 18.55 1.81 45.55 3.41
4371 6750 9.993454 TTTATGATTCCAGAATCTCTACTCATG 57.007 33.333 18.55 0.00 45.55 3.07
4372 6751 7.615039 ATGATTCCAGAATCTCTACTCATGT 57.385 36.000 18.55 0.00 45.55 3.21
4373 6752 7.429374 TGATTCCAGAATCTCTACTCATGTT 57.571 36.000 18.55 0.00 45.55 2.71
4374 6753 7.270779 TGATTCCAGAATCTCTACTCATGTTG 58.729 38.462 18.55 0.00 45.55 3.33
4375 6754 6.611613 TTCCAGAATCTCTACTCATGTTGT 57.388 37.500 0.00 0.00 0.00 3.32
4376 6755 5.970592 TCCAGAATCTCTACTCATGTTGTG 58.029 41.667 0.00 0.00 0.00 3.33
4377 6756 5.716703 TCCAGAATCTCTACTCATGTTGTGA 59.283 40.000 0.00 0.00 35.05 3.58
4427 6806 5.871396 TTGACATATCAAGTACTCCCTCC 57.129 43.478 0.00 0.00 40.01 4.30
4428 6807 3.889538 TGACATATCAAGTACTCCCTCCG 59.110 47.826 0.00 0.00 0.00 4.63
4429 6808 3.890147 GACATATCAAGTACTCCCTCCGT 59.110 47.826 0.00 0.00 0.00 4.69
4430 6809 4.287552 ACATATCAAGTACTCCCTCCGTT 58.712 43.478 0.00 0.00 0.00 4.44
4431 6810 4.715297 ACATATCAAGTACTCCCTCCGTTT 59.285 41.667 0.00 0.00 0.00 3.60
4432 6811 5.189145 ACATATCAAGTACTCCCTCCGTTTT 59.811 40.000 0.00 0.00 0.00 2.43
4433 6812 4.635699 ATCAAGTACTCCCTCCGTTTTT 57.364 40.909 0.00 0.00 0.00 1.94
4434 6813 5.750352 ATCAAGTACTCCCTCCGTTTTTA 57.250 39.130 0.00 0.00 0.00 1.52
4435 6814 5.750352 TCAAGTACTCCCTCCGTTTTTAT 57.250 39.130 0.00 0.00 0.00 1.40
4436 6815 6.117975 TCAAGTACTCCCTCCGTTTTTATT 57.882 37.500 0.00 0.00 0.00 1.40
4437 6816 6.536447 TCAAGTACTCCCTCCGTTTTTATTT 58.464 36.000 0.00 0.00 0.00 1.40
4438 6817 7.678837 TCAAGTACTCCCTCCGTTTTTATTTA 58.321 34.615 0.00 0.00 0.00 1.40
4439 6818 7.820872 TCAAGTACTCCCTCCGTTTTTATTTAG 59.179 37.037 0.00 0.00 0.00 1.85
4440 6819 7.250032 AGTACTCCCTCCGTTTTTATTTAGT 57.750 36.000 0.00 0.00 0.00 2.24
4441 6820 7.326454 AGTACTCCCTCCGTTTTTATTTAGTC 58.674 38.462 0.00 0.00 0.00 2.59
4442 6821 5.494724 ACTCCCTCCGTTTTTATTTAGTCC 58.505 41.667 0.00 0.00 0.00 3.85
4443 6822 5.013391 ACTCCCTCCGTTTTTATTTAGTCCA 59.987 40.000 0.00 0.00 0.00 4.02
4444 6823 5.247862 TCCCTCCGTTTTTATTTAGTCCAC 58.752 41.667 0.00 0.00 0.00 4.02
4445 6824 4.093850 CCCTCCGTTTTTATTTAGTCCACG 59.906 45.833 0.00 0.00 0.00 4.94
4446 6825 4.692155 CCTCCGTTTTTATTTAGTCCACGT 59.308 41.667 0.00 0.00 0.00 4.49
4447 6826 5.868801 CCTCCGTTTTTATTTAGTCCACGTA 59.131 40.000 0.00 0.00 0.00 3.57
4448 6827 6.536224 CCTCCGTTTTTATTTAGTCCACGTAT 59.464 38.462 0.00 0.00 0.00 3.06
4449 6828 7.064966 CCTCCGTTTTTATTTAGTCCACGTATT 59.935 37.037 0.00 0.00 0.00 1.89
4450 6829 8.994429 TCCGTTTTTATTTAGTCCACGTATTA 57.006 30.769 0.00 0.00 0.00 0.98
4451 6830 9.086336 TCCGTTTTTATTTAGTCCACGTATTAG 57.914 33.333 0.00 0.00 0.00 1.73
4452 6831 7.847564 CCGTTTTTATTTAGTCCACGTATTAGC 59.152 37.037 0.00 0.00 0.00 3.09
4453 6832 8.598075 CGTTTTTATTTAGTCCACGTATTAGCT 58.402 33.333 0.00 0.00 0.00 3.32
4454 6833 9.911980 GTTTTTATTTAGTCCACGTATTAGCTC 57.088 33.333 0.00 0.00 0.00 4.09
4455 6834 9.880157 TTTTTATTTAGTCCACGTATTAGCTCT 57.120 29.630 0.00 0.00 0.00 4.09
4456 6835 8.867112 TTTATTTAGTCCACGTATTAGCTCTG 57.133 34.615 0.00 0.00 0.00 3.35
4457 6836 4.913335 TTAGTCCACGTATTAGCTCTGG 57.087 45.455 0.00 0.00 0.00 3.86
4458 6837 2.736347 AGTCCACGTATTAGCTCTGGT 58.264 47.619 0.00 0.00 0.00 4.00
4459 6838 2.688958 AGTCCACGTATTAGCTCTGGTC 59.311 50.000 0.00 0.00 0.00 4.02
4460 6839 2.426024 GTCCACGTATTAGCTCTGGTCA 59.574 50.000 0.00 0.00 0.00 4.02
4461 6840 3.093814 TCCACGTATTAGCTCTGGTCAA 58.906 45.455 0.00 0.00 0.00 3.18
4462 6841 3.512329 TCCACGTATTAGCTCTGGTCAAA 59.488 43.478 0.00 0.00 0.00 2.69
4463 6842 3.865745 CCACGTATTAGCTCTGGTCAAAG 59.134 47.826 0.00 0.00 0.00 2.77
4464 6843 4.495422 CACGTATTAGCTCTGGTCAAAGT 58.505 43.478 0.00 0.00 0.00 2.66
4465 6844 4.563184 CACGTATTAGCTCTGGTCAAAGTC 59.437 45.833 0.00 0.00 0.00 3.01
4466 6845 4.219944 ACGTATTAGCTCTGGTCAAAGTCA 59.780 41.667 0.00 0.00 0.00 3.41
4467 6846 5.168569 CGTATTAGCTCTGGTCAAAGTCAA 58.831 41.667 0.00 0.00 0.00 3.18
4468 6847 5.289675 CGTATTAGCTCTGGTCAAAGTCAAG 59.710 44.000 0.00 0.00 0.00 3.02
4469 6848 1.889545 AGCTCTGGTCAAAGTCAAGC 58.110 50.000 0.00 0.00 0.00 4.01
4470 6849 1.419387 AGCTCTGGTCAAAGTCAAGCT 59.581 47.619 0.00 0.00 33.97 3.74
4471 6850 2.158696 AGCTCTGGTCAAAGTCAAGCTT 60.159 45.455 0.00 0.00 35.17 3.74
4484 6863 7.812309 AAAGTCAAGCTTTGTAAACTTTGAC 57.188 32.000 14.76 14.88 45.00 3.18
4485 6864 6.509418 AGTCAAGCTTTGTAAACTTTGACA 57.491 33.333 20.02 0.00 30.59 3.58
4486 6865 6.919721 AGTCAAGCTTTGTAAACTTTGACAA 58.080 32.000 20.02 0.88 33.81 3.18
4487 6866 7.375053 AGTCAAGCTTTGTAAACTTTGACAAA 58.625 30.769 20.02 0.00 41.90 2.83
4577 6956 9.926158 TGCACTTTCACATCATATAAATTTGTT 57.074 25.926 0.00 0.00 0.00 2.83
4619 6998 8.974060 TTGTCTTCTATAAACTTGGTCAAACT 57.026 30.769 0.00 0.00 0.00 2.66
4620 6999 8.974060 TGTCTTCTATAAACTTGGTCAAACTT 57.026 30.769 0.00 0.00 0.00 2.66
4621 7000 9.403583 TGTCTTCTATAAACTTGGTCAAACTTT 57.596 29.630 0.00 0.00 0.00 2.66
4624 7003 9.807386 CTTCTATAAACTTGGTCAAACTTTACG 57.193 33.333 0.00 0.00 0.00 3.18
4625 7004 9.545105 TTCTATAAACTTGGTCAAACTTTACGA 57.455 29.630 0.00 0.00 0.00 3.43
4626 7005 9.545105 TCTATAAACTTGGTCAAACTTTACGAA 57.455 29.630 0.00 0.00 0.00 3.85
4627 7006 9.807386 CTATAAACTTGGTCAAACTTTACGAAG 57.193 33.333 0.00 0.00 37.43 3.79
4655 7034 7.462109 GACTTCAGTCAACTCTAATATGCAG 57.538 40.000 1.86 0.00 44.18 4.41
4656 7035 7.175347 ACTTCAGTCAACTCTAATATGCAGA 57.825 36.000 0.00 0.00 0.00 4.26
4657 7036 7.264221 ACTTCAGTCAACTCTAATATGCAGAG 58.736 38.462 11.37 11.37 44.28 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 59 4.202223 TGTTTCATCTACGAGCCTTATCCC 60.202 45.833 0.00 0.00 0.00 3.85
57 65 4.471904 TGAATGTTTCATCTACGAGCCT 57.528 40.909 0.00 0.00 34.08 4.58
68 76 7.228308 TGAGTTCATGTGTGTATGAATGTTTCA 59.772 33.333 4.70 0.00 45.67 2.69
95 103 7.872881 AGTACATAGTACATGTTGATCTACCG 58.127 38.462 2.30 0.00 33.76 4.02
169 177 1.679898 CCCAGTTTCGGGCTCTCTT 59.320 57.895 0.00 0.00 40.07 2.85
182 190 5.833131 ACAAAGACACATGATTTTACCCAGT 59.167 36.000 0.00 0.00 0.00 4.00
357 365 1.065701 AGTCAGAGGTAAGCGCATACG 59.934 52.381 15.82 3.23 44.07 3.06
373 381 2.707849 GGCGTCGGGCTCTAAGTCA 61.708 63.158 0.00 0.00 42.94 3.41
469 477 3.164977 TGGTTGACCACGGCCTCA 61.165 61.111 0.00 0.00 42.01 3.86
537 545 1.477553 GCAAATGGCTCTTGGATCCA 58.522 50.000 11.44 11.44 40.25 3.41
547 555 4.197498 GCATCCGCGCAAATGGCT 62.197 61.111 17.69 0.00 41.67 4.75
582 590 2.726180 CGCCGCGATCGAACTAGG 60.726 66.667 21.57 13.69 38.10 3.02
584 592 4.260355 CCCGCCGCGATCGAACTA 62.260 66.667 21.57 0.00 38.10 2.24
650 658 4.559063 CCCATGCAGAGCCGAGGG 62.559 72.222 0.00 0.00 0.00 4.30
712 755 2.983592 CGCCCCCAAGCTTCGTTT 60.984 61.111 0.00 0.00 0.00 3.60
749 792 2.901840 CATCCACATTCCGGGCGG 60.902 66.667 0.00 0.00 0.00 6.13
752 795 0.179045 GTCTCCATCCACATTCCGGG 60.179 60.000 0.00 0.00 0.00 5.73
757 800 7.009179 ACATATATTCGTCTCCATCCACATT 57.991 36.000 0.00 0.00 0.00 2.71
761 804 6.724441 ACCTAACATATATTCGTCTCCATCCA 59.276 38.462 0.00 0.00 0.00 3.41
949 3039 5.299028 CCAATATGTTTGGACGGATGATTCA 59.701 40.000 3.73 0.00 42.06 2.57
971 3061 1.202722 GGACTCCTCAAACGTTTCCCA 60.203 52.381 11.37 0.00 0.00 4.37
972 3062 1.520494 GGACTCCTCAAACGTTTCCC 58.480 55.000 11.37 0.64 0.00 3.97
1021 3111 1.645710 TGACCTGGTTCCTTCTCCTC 58.354 55.000 0.00 0.00 0.00 3.71
1035 3125 1.271926 CGGATTCCTGGGTTTTGACCT 60.272 52.381 0.30 0.00 0.00 3.85
1087 3177 2.486727 GGTTTCGACCTGGTTCCTTCTT 60.487 50.000 0.00 0.00 0.00 2.52
1127 3217 2.677003 CGGACCGCATGTGGTGAAC 61.677 63.158 34.86 21.84 44.01 3.18
1187 3277 2.126228 TGCGCGTGTAGTGTAGCC 60.126 61.111 8.43 0.00 0.00 3.93
1188 3278 1.134530 CTCTGCGCGTGTAGTGTAGC 61.135 60.000 13.85 0.00 41.84 3.58
1189 3279 0.523546 CCTCTGCGCGTGTAGTGTAG 60.524 60.000 13.85 4.30 43.16 2.74
1190 3280 1.239296 ACCTCTGCGCGTGTAGTGTA 61.239 55.000 13.85 0.00 0.00 2.90
1191 3281 1.239296 TACCTCTGCGCGTGTAGTGT 61.239 55.000 13.85 13.85 0.00 3.55
1192 3282 0.109458 TTACCTCTGCGCGTGTAGTG 60.109 55.000 13.85 11.22 0.00 2.74
1193 3283 0.170561 CTTACCTCTGCGCGTGTAGT 59.829 55.000 13.85 1.86 0.00 2.73
1194 3284 0.450583 TCTTACCTCTGCGCGTGTAG 59.549 55.000 8.43 7.85 0.00 2.74
1195 3285 0.883153 TTCTTACCTCTGCGCGTGTA 59.117 50.000 8.43 0.00 0.00 2.90
1228 3552 0.767375 ATTGCTGACTCTGGGTGTGT 59.233 50.000 0.00 0.00 0.00 3.72
1229 3553 1.446907 GATTGCTGACTCTGGGTGTG 58.553 55.000 0.00 0.00 0.00 3.82
1230 3554 0.326264 GGATTGCTGACTCTGGGTGT 59.674 55.000 0.00 0.00 0.00 4.16
1258 3584 0.322456 TGATTTTGGGCGAGGAGTGG 60.322 55.000 0.00 0.00 0.00 4.00
1419 3745 2.467826 CGGAGAGGGTACGGACGAC 61.468 68.421 0.00 0.00 0.00 4.34
1705 4031 2.863809 AGCTCACCTTTTTGGACGAAT 58.136 42.857 0.00 0.00 39.71 3.34
1763 4089 3.673484 CCCCTTGTGTTGGCAGCG 61.673 66.667 0.00 0.00 0.00 5.18
1802 4128 0.813610 CTGCACCACGAACAGGAACA 60.814 55.000 0.00 0.00 0.00 3.18
1928 4263 2.173519 ACTCCAGCACCCAAATTCATG 58.826 47.619 0.00 0.00 0.00 3.07
1985 4320 1.972660 AATCAGTAGGTGCCGGAGCC 61.973 60.000 5.05 6.04 38.69 4.70
2129 4485 4.022068 GGAACTCCAATTTGTGCATTGAGA 60.022 41.667 0.00 0.00 36.39 3.27
2130 4486 4.021719 AGGAACTCCAATTTGTGCATTGAG 60.022 41.667 0.00 0.00 36.39 3.02
2131 4487 3.896888 AGGAACTCCAATTTGTGCATTGA 59.103 39.130 0.00 0.00 36.39 2.57
2132 4488 4.261578 AGGAACTCCAATTTGTGCATTG 57.738 40.909 0.00 0.00 38.89 2.82
2265 4633 4.284490 ACCTAAGTCTTGATCTTCAGCACA 59.716 41.667 0.00 0.00 0.00 4.57
2326 4694 0.236711 CACCTTGCTGCAACTTCTCG 59.763 55.000 11.69 0.30 0.00 4.04
2595 4963 1.702567 GGGTCCCCTCCTATTTCCCAT 60.703 57.143 0.00 0.00 34.20 4.00
3101 5471 2.743538 TGCCACTGCTCGCATCAC 60.744 61.111 0.00 0.00 38.71 3.06
3177 5547 2.284995 GGCCTCCTGAGTCCCACT 60.285 66.667 0.00 0.00 0.00 4.00
3377 5747 1.132262 CACCGAAATTCCCCACATTCG 59.868 52.381 0.00 0.00 43.04 3.34
3401 5771 2.632996 ACAACCTTCTCGACTCCATCAA 59.367 45.455 0.00 0.00 0.00 2.57
3411 5781 1.151668 CAGCTCCAACAACCTTCTCG 58.848 55.000 0.00 0.00 0.00 4.04
3529 5899 5.571784 ATGCTAGTCATCAACCAAACATG 57.428 39.130 0.00 0.00 0.00 3.21
3682 6052 5.387113 AGGCATCTATTTGGTCCATTACA 57.613 39.130 0.00 0.00 0.00 2.41
3925 6295 4.645588 AGAAATCCTACAGGTTACTCCTCG 59.354 45.833 0.00 0.00 46.24 4.63
4118 6496 8.102676 TGAAATCACCAAGAGAATACTCATGAA 58.897 33.333 0.00 0.00 42.27 2.57
4171 6549 8.760103 TGTGAAATCAACACATATGGAAAATG 57.240 30.769 7.80 0.00 42.20 2.32
4186 6564 4.081142 TCGAGAGGGCTTATGTGAAATCAA 60.081 41.667 0.00 0.00 0.00 2.57
4203 6581 1.328680 CGGGTGATGCATTTTCGAGAG 59.671 52.381 0.00 0.00 0.00 3.20
4204 6582 1.338674 ACGGGTGATGCATTTTCGAGA 60.339 47.619 0.00 0.00 0.00 4.04
4205 6583 1.086696 ACGGGTGATGCATTTTCGAG 58.913 50.000 0.00 0.00 0.00 4.04
4206 6584 1.529226 AACGGGTGATGCATTTTCGA 58.471 45.000 0.00 0.00 0.00 3.71
4207 6585 2.095263 AGAAACGGGTGATGCATTTTCG 60.095 45.455 0.00 5.92 0.00 3.46
4223 6602 8.487313 AAACCACAAAAACTAATGGAAGAAAC 57.513 30.769 0.00 0.00 36.04 2.78
4225 6604 9.974980 GATAAACCACAAAAACTAATGGAAGAA 57.025 29.630 0.00 0.00 36.04 2.52
4226 6605 8.581578 GGATAAACCACAAAAACTAATGGAAGA 58.418 33.333 0.00 0.00 38.79 2.87
4227 6606 7.817478 GGGATAAACCACAAAAACTAATGGAAG 59.183 37.037 0.00 0.00 41.20 3.46
4228 6607 7.290248 TGGGATAAACCACAAAAACTAATGGAA 59.710 33.333 0.00 0.00 41.20 3.53
4229 6608 6.782988 TGGGATAAACCACAAAAACTAATGGA 59.217 34.615 0.00 0.00 41.20 3.41
4230 6609 6.998802 TGGGATAAACCACAAAAACTAATGG 58.001 36.000 0.00 0.00 41.20 3.16
4231 6610 7.064490 GCATGGGATAAACCACAAAAACTAATG 59.936 37.037 0.00 0.00 44.72 1.90
4305 6684 4.665451 AGGATGTCATTTCCATGTCAACA 58.335 39.130 0.00 0.00 33.01 3.33
4313 6692 5.474532 GCATAATGCTAGGATGTCATTTCCA 59.525 40.000 0.00 0.00 40.96 3.53
4320 6699 7.102346 AGAACTATGCATAATGCTAGGATGTC 58.898 38.462 8.00 0.00 45.31 3.06
4325 6704 9.440773 TCATAAAGAACTATGCATAATGCTAGG 57.559 33.333 8.00 0.00 45.31 3.02
4359 6738 5.745312 TTGGTCACAACATGAGTAGAGAT 57.255 39.130 0.00 0.00 38.28 2.75
4372 6751 4.973168 AGCTAGAATTCTGTTGGTCACAA 58.027 39.130 18.47 0.00 33.87 3.33
4373 6752 4.623932 AGCTAGAATTCTGTTGGTCACA 57.376 40.909 18.47 0.00 0.00 3.58
4374 6753 4.378874 GCAAGCTAGAATTCTGTTGGTCAC 60.379 45.833 18.47 6.08 0.00 3.67
4375 6754 3.753272 GCAAGCTAGAATTCTGTTGGTCA 59.247 43.478 18.47 0.00 0.00 4.02
4376 6755 4.006319 AGCAAGCTAGAATTCTGTTGGTC 58.994 43.478 18.47 7.20 0.00 4.02
4377 6756 4.026356 AGCAAGCTAGAATTCTGTTGGT 57.974 40.909 18.47 18.51 0.00 3.67
4406 6785 3.889538 CGGAGGGAGTACTTGATATGTCA 59.110 47.826 0.00 0.00 0.00 3.58
4409 6788 4.939052 AACGGAGGGAGTACTTGATATG 57.061 45.455 0.00 0.00 0.00 1.78
4419 6798 5.013391 TGGACTAAATAAAAACGGAGGGAGT 59.987 40.000 0.00 0.00 0.00 3.85
4420 6799 5.353400 GTGGACTAAATAAAAACGGAGGGAG 59.647 44.000 0.00 0.00 0.00 4.30
4421 6800 5.247862 GTGGACTAAATAAAAACGGAGGGA 58.752 41.667 0.00 0.00 0.00 4.20
4422 6801 4.093850 CGTGGACTAAATAAAAACGGAGGG 59.906 45.833 0.00 0.00 0.00 4.30
4423 6802 4.692155 ACGTGGACTAAATAAAAACGGAGG 59.308 41.667 0.00 0.00 34.06 4.30
4424 6803 5.851047 ACGTGGACTAAATAAAAACGGAG 57.149 39.130 0.00 0.00 34.06 4.63
4425 6804 7.903995 AATACGTGGACTAAATAAAAACGGA 57.096 32.000 0.00 0.00 34.06 4.69
4426 6805 7.847564 GCTAATACGTGGACTAAATAAAAACGG 59.152 37.037 0.00 0.00 34.06 4.44
4427 6806 8.598075 AGCTAATACGTGGACTAAATAAAAACG 58.402 33.333 0.00 0.00 35.78 3.60
4428 6807 9.911980 GAGCTAATACGTGGACTAAATAAAAAC 57.088 33.333 0.00 0.00 0.00 2.43
4429 6808 9.880157 AGAGCTAATACGTGGACTAAATAAAAA 57.120 29.630 0.00 0.00 0.00 1.94
4430 6809 9.309516 CAGAGCTAATACGTGGACTAAATAAAA 57.690 33.333 0.00 0.00 0.00 1.52
4431 6810 7.924412 CCAGAGCTAATACGTGGACTAAATAAA 59.076 37.037 0.00 0.00 0.00 1.40
4432 6811 7.069085 ACCAGAGCTAATACGTGGACTAAATAA 59.931 37.037 0.00 0.00 32.26 1.40
4433 6812 6.548622 ACCAGAGCTAATACGTGGACTAAATA 59.451 38.462 0.00 0.00 32.26 1.40
4434 6813 5.363005 ACCAGAGCTAATACGTGGACTAAAT 59.637 40.000 0.00 0.00 32.26 1.40
4435 6814 4.708421 ACCAGAGCTAATACGTGGACTAAA 59.292 41.667 0.00 0.00 32.26 1.85
4436 6815 4.275810 ACCAGAGCTAATACGTGGACTAA 58.724 43.478 0.00 0.00 32.26 2.24
4437 6816 3.881688 GACCAGAGCTAATACGTGGACTA 59.118 47.826 0.00 0.00 32.26 2.59
4438 6817 2.688958 GACCAGAGCTAATACGTGGACT 59.311 50.000 0.00 0.00 32.26 3.85
4439 6818 2.426024 TGACCAGAGCTAATACGTGGAC 59.574 50.000 0.00 0.00 32.26 4.02
4440 6819 2.730382 TGACCAGAGCTAATACGTGGA 58.270 47.619 0.00 0.00 32.26 4.02
4441 6820 3.520290 TTGACCAGAGCTAATACGTGG 57.480 47.619 0.00 0.00 0.00 4.94
4442 6821 4.495422 ACTTTGACCAGAGCTAATACGTG 58.505 43.478 0.00 0.00 0.00 4.49
4443 6822 4.219944 TGACTTTGACCAGAGCTAATACGT 59.780 41.667 0.00 0.00 0.00 3.57
4444 6823 4.744570 TGACTTTGACCAGAGCTAATACG 58.255 43.478 0.00 0.00 0.00 3.06
4445 6824 5.064071 GCTTGACTTTGACCAGAGCTAATAC 59.936 44.000 0.00 0.00 0.00 1.89
4446 6825 5.046304 AGCTTGACTTTGACCAGAGCTAATA 60.046 40.000 0.00 0.00 37.24 0.98
4447 6826 4.006319 GCTTGACTTTGACCAGAGCTAAT 58.994 43.478 0.00 0.00 0.00 1.73
4448 6827 3.071602 AGCTTGACTTTGACCAGAGCTAA 59.928 43.478 0.00 0.00 37.24 3.09
4449 6828 2.634940 AGCTTGACTTTGACCAGAGCTA 59.365 45.455 0.00 0.00 37.24 3.32
4450 6829 1.419387 AGCTTGACTTTGACCAGAGCT 59.581 47.619 0.00 0.00 34.43 4.09
4451 6830 1.889545 AGCTTGACTTTGACCAGAGC 58.110 50.000 0.00 0.00 0.00 4.09
4461 6840 6.919721 TGTCAAAGTTTACAAAGCTTGACTT 58.080 32.000 19.48 3.36 39.29 3.01
4462 6841 6.509418 TGTCAAAGTTTACAAAGCTTGACT 57.491 33.333 19.48 0.00 39.29 3.41
4463 6842 7.575332 TTTGTCAAAGTTTACAAAGCTTGAC 57.425 32.000 0.00 15.49 39.88 3.18
4551 6930 9.926158 AACAAATTTATATGATGTGAAAGTGCA 57.074 25.926 0.00 0.00 0.00 4.57
4593 6972 9.574516 AGTTTGACCAAGTTTATAGAAGACAAT 57.425 29.630 0.00 0.00 0.00 2.71
4594 6973 8.974060 AGTTTGACCAAGTTTATAGAAGACAA 57.026 30.769 0.00 0.00 0.00 3.18
4595 6974 8.974060 AAGTTTGACCAAGTTTATAGAAGACA 57.026 30.769 0.00 0.00 0.00 3.41
4598 6977 9.807386 CGTAAAGTTTGACCAAGTTTATAGAAG 57.193 33.333 0.00 0.00 40.73 2.85
4599 6978 9.545105 TCGTAAAGTTTGACCAAGTTTATAGAA 57.455 29.630 0.00 0.00 40.73 2.10
4600 6979 9.545105 TTCGTAAAGTTTGACCAAGTTTATAGA 57.455 29.630 0.00 4.22 40.73 1.98
4601 6980 9.807386 CTTCGTAAAGTTTGACCAAGTTTATAG 57.193 33.333 0.00 2.48 40.73 1.31
4602 6981 9.328845 ACTTCGTAAAGTTTGACCAAGTTTATA 57.671 29.630 0.00 0.00 43.28 0.98
4603 6982 8.217131 ACTTCGTAAAGTTTGACCAAGTTTAT 57.783 30.769 0.00 0.00 43.28 1.40
4604 6983 7.614124 ACTTCGTAAAGTTTGACCAAGTTTA 57.386 32.000 0.00 0.00 43.28 2.01
4605 6984 6.505044 ACTTCGTAAAGTTTGACCAAGTTT 57.495 33.333 0.00 0.00 43.28 2.66
4631 7010 7.261325 TCTGCATATTAGAGTTGACTGAAGTC 58.739 38.462 3.41 3.41 44.97 3.01
4632 7011 7.175347 TCTGCATATTAGAGTTGACTGAAGT 57.825 36.000 0.00 0.00 0.00 3.01
4633 7012 7.697352 CTCTGCATATTAGAGTTGACTGAAG 57.303 40.000 5.84 0.00 37.48 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.