Multiple sequence alignment - TraesCS5D01G128300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G128300 chr5D 100.000 8742 0 0 1 8742 200638076 200646817 0.000000e+00 16144.0
1 TraesCS5D01G128300 chr5D 88.197 305 32 4 5383 5685 360542173 360541871 2.320000e-95 361.0
2 TraesCS5D01G128300 chr5D 83.204 387 51 13 3 382 532694625 532695004 8.400000e-90 342.0
3 TraesCS5D01G128300 chr5D 81.234 389 60 12 1 381 264760238 264760621 1.430000e-77 302.0
4 TraesCS5D01G128300 chr5D 97.222 36 1 0 6100 6135 196346948 196346983 2.640000e-05 62.1
5 TraesCS5D01G128300 chr5D 93.023 43 2 1 6100 6141 539458822 539458864 2.640000e-05 62.1
6 TraesCS5D01G128300 chr5B 96.358 6123 139 38 1 6095 211581680 211587746 0.000000e+00 9995.0
7 TraesCS5D01G128300 chr5B 97.582 2068 40 5 6220 8284 211588008 211590068 0.000000e+00 3533.0
8 TraesCS5D01G128300 chr5B 95.321 748 25 5 7540 8284 211618699 211619439 0.000000e+00 1179.0
9 TraesCS5D01G128300 chr5B 89.180 305 29 4 5383 5686 192866460 192866761 2.300000e-100 377.0
10 TraesCS5D01G128300 chr5B 88.525 305 33 2 5383 5686 400094675 400094372 1.390000e-97 368.0
11 TraesCS5D01G128300 chr5B 84.783 368 42 12 1 360 372822579 372822218 3.000000e-94 357.0
12 TraesCS5D01G128300 chr5B 81.472 394 59 14 3 388 672808445 672808832 2.370000e-80 311.0
13 TraesCS5D01G128300 chr5B 99.057 106 1 0 6115 6220 211587818 211587923 3.220000e-44 191.0
14 TraesCS5D01G128300 chr5B 94.624 93 5 0 8650 8742 211590670 211590762 2.540000e-30 145.0
15 TraesCS5D01G128300 chr5B 94.624 93 5 0 8650 8742 211620040 211620132 2.540000e-30 145.0
16 TraesCS5D01G128300 chr5A 95.357 4135 119 30 633 4739 214913740 214917829 0.000000e+00 6505.0
17 TraesCS5D01G128300 chr5A 94.735 3514 112 33 4779 8284 214917826 214921274 0.000000e+00 5397.0
18 TraesCS5D01G128300 chr5A 84.387 538 71 12 105 637 214913030 214913559 4.680000e-142 516.0
19 TraesCS5D01G128300 chr5A 88.599 307 33 2 5383 5688 441923225 441922920 1.070000e-98 372.0
20 TraesCS5D01G128300 chr5A 84.122 296 23 11 8462 8734 214949454 214949748 1.870000e-66 265.0
21 TraesCS5D01G128300 chr5A 92.135 89 4 3 8280 8366 214921639 214921726 1.190000e-23 122.0
22 TraesCS5D01G128300 chr7B 88.925 307 24 9 5383 5685 254836498 254836798 3.850000e-98 370.0
23 TraesCS5D01G128300 chr7B 81.701 388 56 15 3 381 731858861 731859242 8.520000e-80 309.0
24 TraesCS5D01G128300 chr7B 94.872 39 2 0 344 382 461112772 461112810 2.640000e-05 62.1
25 TraesCS5D01G128300 chr2D 88.197 305 32 4 5383 5686 388833977 388833676 2.320000e-95 361.0
26 TraesCS5D01G128300 chr2D 88.197 305 31 5 5383 5686 380416842 380416542 8.340000e-95 359.0
27 TraesCS5D01G128300 chr4A 80.889 450 68 13 7306 7742 518828931 518829375 1.090000e-88 339.0
28 TraesCS5D01G128300 chr4A 82.292 384 59 9 1 381 97309257 97309634 3.040000e-84 324.0
29 TraesCS5D01G128300 chr4A 89.610 154 15 1 3947 4100 518826148 518826300 2.490000e-45 195.0
30 TraesCS5D01G128300 chr4B 86.458 288 39 0 7306 7593 100849842 100850129 5.090000e-82 316.0
31 TraesCS5D01G128300 chr4B 88.554 166 18 1 3936 4100 100847168 100847333 5.350000e-47 200.0
32 TraesCS5D01G128300 chr4B 88.415 164 17 2 3643 3805 100846928 100847090 6.920000e-46 196.0
33 TraesCS5D01G128300 chr6D 81.330 391 56 15 1 381 115631681 115632064 1.430000e-77 302.0
34 TraesCS5D01G128300 chr4D 89.157 166 17 1 3936 4100 68424475 68424640 1.150000e-48 206.0
35 TraesCS5D01G128300 chr4D 88.415 164 17 2 3643 3805 68424233 68424395 6.920000e-46 196.0
36 TraesCS5D01G128300 chr1B 97.222 36 1 0 6100 6135 280424344 280424379 2.640000e-05 62.1
37 TraesCS5D01G128300 chr1D 97.143 35 1 0 6100 6134 319351609 319351575 9.480000e-05 60.2
38 TraesCS5D01G128300 chr6B 89.362 47 4 1 7698 7744 29737852 29737897 3.410000e-04 58.4
39 TraesCS5D01G128300 chr3B 88.000 50 4 2 6103 6151 677753347 677753299 3.410000e-04 58.4
40 TraesCS5D01G128300 chr6A 90.476 42 4 0 6097 6138 565345101 565345142 1.000000e-03 56.5
41 TraesCS5D01G128300 chr7D 87.755 49 3 3 6087 6134 626135809 626135855 4.000000e-03 54.7
42 TraesCS5D01G128300 chr7A 90.476 42 2 2 7710 7751 30410632 30410671 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G128300 chr5D 200638076 200646817 8741 False 16144.000000 16144 100.00000 1 8742 1 chr5D.!!$F2 8741
1 TraesCS5D01G128300 chr5B 211581680 211590762 9082 False 3466.000000 9995 96.90525 1 8742 4 chr5B.!!$F3 8741
2 TraesCS5D01G128300 chr5B 211618699 211620132 1433 False 662.000000 1179 94.97250 7540 8742 2 chr5B.!!$F4 1202
3 TraesCS5D01G128300 chr5A 214913030 214921726 8696 False 3135.000000 6505 91.65350 105 8366 4 chr5A.!!$F2 8261
4 TraesCS5D01G128300 chr4A 518826148 518829375 3227 False 267.000000 339 85.24950 3947 7742 2 chr4A.!!$F2 3795
5 TraesCS5D01G128300 chr4B 100846928 100850129 3201 False 237.333333 316 87.80900 3643 7593 3 chr4B.!!$F1 3950

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
641 832 1.139058 ACGGATCACACTATGGCTTCC 59.861 52.381 0.00 0.0 0.00 3.46 F
989 1183 2.030007 CCTCTTCATCCTCAGATCTCGC 60.030 54.545 0.00 0.0 0.00 5.03 F
1353 1551 2.926200 CTGATGTGACGCGAGAATCTTT 59.074 45.455 15.93 0.0 0.00 2.52 F
2620 2836 3.496130 CCTTAGCGTTAGCCATCATCAAG 59.504 47.826 0.00 0.0 46.67 3.02 F
4459 5050 0.038067 TTGCATGCAGAACACATGGC 60.038 50.000 21.50 0.0 44.12 4.40 F
4460 5051 0.896479 TGCATGCAGAACACATGGCT 60.896 50.000 18.46 0.0 44.12 4.75 F
5416 6597 1.098050 ATCGCTTGAGATGGTTTGGC 58.902 50.000 0.00 0.0 0.00 4.52 F
5683 6864 0.396974 TTGTTTGGGACTGCAAGGCT 60.397 50.000 0.00 0.0 46.21 4.58 F
5684 6865 0.396974 TGTTTGGGACTGCAAGGCTT 60.397 50.000 0.00 0.0 46.21 4.35 F
6030 7293 1.073923 AGTGGTGCCTAAACCTTCTGG 59.926 52.381 0.00 0.0 41.16 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2210 2410 2.433604 ACTATCAGTGAGGCATGGAGTG 59.566 50.000 0.00 0.00 0.00 3.51 R
2620 2836 3.261580 GCAAAACATTAGTGATTGGGGC 58.738 45.455 0.00 0.00 0.00 5.80 R
3276 3492 8.474006 AAACCAGTGAAAAATGTTAGAAACAC 57.526 30.769 0.00 0.00 45.50 3.32 R
4588 5179 2.820767 AAGGCTCCTCGCGAGAAACG 62.821 60.000 36.59 19.94 41.63 3.60 R
5416 6597 0.889186 GGGGCCTGCGTTGTATATGG 60.889 60.000 0.84 0.00 0.00 2.74 R
5489 6670 2.510382 TCAAGTTTGGTCTACCCCAACA 59.490 45.455 11.78 0.00 44.03 3.33 R
6262 7662 2.704464 TGGGATCTGTGCATCTCAAG 57.296 50.000 0.00 0.00 29.75 3.02 R
6706 8106 4.582869 TGGAATCAAGTCATGAAGTGAGG 58.417 43.478 13.39 0.00 42.54 3.86 R
7205 8661 7.611467 ACAAATGTAATATGAAGCAAGGACAGA 59.389 33.333 0.00 0.00 0.00 3.41 R
7949 9457 2.037772 CAGCCACTTGTACTGAACTCCT 59.962 50.000 0.00 0.00 33.10 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 2.222729 GCGTACACTTCAAGGCGTATTG 60.223 50.000 0.00 0.00 0.00 1.90
82 83 8.100791 TCAACATGCTTAACCTAGATTGTAACT 58.899 33.333 0.00 0.00 0.00 2.24
87 88 2.981859 ACCTAGATTGTAACTGCCCG 57.018 50.000 0.00 0.00 0.00 6.13
130 131 2.751259 CGGTGCCTATATAAGCCGTAGA 59.249 50.000 0.87 0.00 35.11 2.59
131 132 3.181499 CGGTGCCTATATAAGCCGTAGAG 60.181 52.174 0.87 0.00 35.11 2.43
180 181 7.177041 TCTGAGAGGTTTAGAACTTAGAACTCC 59.823 40.741 0.00 0.00 0.00 3.85
461 466 7.363431 TCGAGTATGATAATGAGTGATCACAC 58.637 38.462 27.02 21.21 46.24 3.82
577 583 3.198200 TGCTTTGCAATGGAGCCATATTT 59.802 39.130 16.85 0.00 34.76 1.40
578 584 4.193865 GCTTTGCAATGGAGCCATATTTT 58.806 39.130 13.62 0.00 35.31 1.82
583 589 8.804912 TTTGCAATGGAGCCATATTTTATTTT 57.195 26.923 0.00 0.00 35.31 1.82
602 608 3.924114 TTTTGGAGGGCGATGATCTTA 57.076 42.857 0.00 0.00 0.00 2.10
641 832 1.139058 ACGGATCACACTATGGCTTCC 59.861 52.381 0.00 0.00 0.00 3.46
707 898 9.244799 CTTGCATTACTTATGTTCGATGTACTA 57.755 33.333 0.00 0.00 36.57 1.82
731 922 7.102847 AGAAACCACTTATTTTGAAACGGAA 57.897 32.000 0.00 0.00 0.00 4.30
749 940 8.943909 AAACGGAAGAGGTACTATTAATTCTG 57.056 34.615 0.00 0.00 41.38 3.02
752 943 7.341256 ACGGAAGAGGTACTATTAATTCTGACA 59.659 37.037 0.00 0.00 41.38 3.58
834 1028 3.863142 AGAATCACTGAATTTGCCTGC 57.137 42.857 0.00 0.00 0.00 4.85
987 1181 3.828451 CCTCCTCTTCATCCTCAGATCTC 59.172 52.174 0.00 0.00 0.00 2.75
988 1182 3.485394 TCCTCTTCATCCTCAGATCTCG 58.515 50.000 0.00 0.00 0.00 4.04
989 1183 2.030007 CCTCTTCATCCTCAGATCTCGC 60.030 54.545 0.00 0.00 0.00 5.03
1176 1374 5.773176 TCCCTTGGATCTAAAACCTTTTGTC 59.227 40.000 0.00 0.00 0.00 3.18
1353 1551 2.926200 CTGATGTGACGCGAGAATCTTT 59.074 45.455 15.93 0.00 0.00 2.52
1385 1583 5.047092 ACGACGGAGGAGGTTTTAAATCTTA 60.047 40.000 0.00 0.00 0.00 2.10
1810 2009 5.072040 TCTCTTGTCAAATCTATGCGTGA 57.928 39.130 0.00 0.00 0.00 4.35
2078 2278 4.129380 TCTGTCCTTGCGATCATATTTGG 58.871 43.478 0.00 0.00 0.00 3.28
2083 2283 5.700832 GTCCTTGCGATCATATTTGGACATA 59.299 40.000 0.00 0.00 41.45 2.29
2210 2410 6.866480 TGAGATTGGCATTTCTCAAAATACC 58.134 36.000 21.56 0.00 43.97 2.73
2370 2576 5.765182 GGGATTGGGAGTAGAACATATGTTG 59.235 44.000 25.42 0.00 38.56 3.33
2477 2693 8.258708 ACTTACTTGACTGGAGTATTAATGACC 58.741 37.037 0.00 0.00 30.30 4.02
2566 2782 5.477291 AGGACTGAGTAATGACGAAAGAGAA 59.523 40.000 0.00 0.00 0.00 2.87
2620 2836 3.496130 CCTTAGCGTTAGCCATCATCAAG 59.504 47.826 0.00 0.00 46.67 3.02
3276 3492 5.095691 ACGCTGATTTTAGGCATATTTCG 57.904 39.130 0.00 0.00 0.00 3.46
3494 3711 4.062293 AGCACTATCTTTACACGCACAAA 58.938 39.130 0.00 0.00 0.00 2.83
4414 4991 6.441274 GGGTATGCTCAAAATCATACACATG 58.559 40.000 12.56 0.00 44.68 3.21
4456 5047 0.245539 GCCTTGCATGCAGAACACAT 59.754 50.000 21.50 0.00 0.00 3.21
4458 5049 1.403647 CCTTGCATGCAGAACACATGG 60.404 52.381 21.50 9.92 44.12 3.66
4459 5050 0.038067 TTGCATGCAGAACACATGGC 60.038 50.000 21.50 0.00 44.12 4.40
4460 5051 0.896479 TGCATGCAGAACACATGGCT 60.896 50.000 18.46 0.00 44.12 4.75
4462 5053 1.990799 CATGCAGAACACATGGCTTG 58.009 50.000 0.00 0.00 40.99 4.01
4463 5054 1.542472 CATGCAGAACACATGGCTTGA 59.458 47.619 7.45 0.00 40.99 3.02
4465 5056 2.030371 TGCAGAACACATGGCTTGAAA 58.970 42.857 7.45 0.00 0.00 2.69
4466 5057 2.629137 TGCAGAACACATGGCTTGAAAT 59.371 40.909 7.45 0.00 0.00 2.17
4467 5058 3.825585 TGCAGAACACATGGCTTGAAATA 59.174 39.130 7.45 0.00 0.00 1.40
4468 5059 4.168760 GCAGAACACATGGCTTGAAATAC 58.831 43.478 7.45 0.00 0.00 1.89
4588 5179 6.308282 CGTTCAGAGTACCAGAACATAACTTC 59.692 42.308 17.47 0.00 41.17 3.01
4779 5387 4.980573 TCCTCTGGCTGCTTTAAGTTTTA 58.019 39.130 0.00 0.00 0.00 1.52
4813 5421 3.132925 CTGCCTGTTTCCACCATTTTTG 58.867 45.455 0.00 0.00 0.00 2.44
5090 5855 6.112058 AGTCTCTACCATTGCATTTCTCTTC 58.888 40.000 0.00 0.00 0.00 2.87
5102 5867 2.806608 TTCTCTTCGTTTACCGCTGT 57.193 45.000 0.00 0.00 36.19 4.40
5240 6412 2.798680 GAGTACTCCACACATGCGTAG 58.201 52.381 12.13 0.00 0.00 3.51
5340 6520 6.040504 GTCCTTGGGTTTCACTTAACTTGAAT 59.959 38.462 0.00 0.00 33.03 2.57
5408 6589 2.625737 CTTGTCCACATCGCTTGAGAT 58.374 47.619 0.00 0.00 0.00 2.75
5416 6597 1.098050 ATCGCTTGAGATGGTTTGGC 58.902 50.000 0.00 0.00 0.00 4.52
5489 6670 6.992063 AACGCTTTGATAATGTCAAGAGAT 57.008 33.333 0.00 0.00 46.85 2.75
5515 6696 3.244770 GGGGTAGACCAAACTTGACATGA 60.245 47.826 0.00 0.00 42.91 3.07
5683 6864 0.396974 TTGTTTGGGACTGCAAGGCT 60.397 50.000 0.00 0.00 46.21 4.58
5684 6865 0.396974 TGTTTGGGACTGCAAGGCTT 60.397 50.000 0.00 0.00 46.21 4.35
5720 6901 5.467035 AGTTAATTTTGTGTCATGTGGGG 57.533 39.130 0.00 0.00 0.00 4.96
6030 7293 1.073923 AGTGGTGCCTAAACCTTCTGG 59.926 52.381 0.00 0.00 41.16 3.86
6088 7395 7.420002 ACGTGAACCTTTTGGATAAAAACTAC 58.580 34.615 0.00 0.00 44.07 2.73
6089 7396 6.859508 CGTGAACCTTTTGGATAAAAACTACC 59.140 38.462 0.00 0.00 44.07 3.18
6090 7397 7.149973 GTGAACCTTTTGGATAAAAACTACCC 58.850 38.462 0.00 0.00 44.07 3.69
6092 7399 5.088730 ACCTTTTGGATAAAAACTACCCCC 58.911 41.667 0.00 0.00 44.07 5.40
6139 7454 7.175293 GGACAGAGGGAGTATAACATAGTGTAG 59.825 44.444 0.00 0.00 0.00 2.74
6262 7662 3.069729 AGTGGCGGTATTATGTCCTTCTC 59.930 47.826 0.00 0.00 0.00 2.87
7192 8648 7.124573 TCATGTTAGCCACTTATCATAGTGT 57.875 36.000 0.00 0.00 43.17 3.55
7205 8661 9.533831 ACTTATCATAGTGTGGAAAGGATTTTT 57.466 29.630 6.93 0.00 39.27 1.94
7863 9371 2.224113 GGGTTTCAGAACTACGTCACCA 60.224 50.000 0.00 0.00 36.03 4.17
7919 9427 2.806945 TATTTGTTCCCTGGAGCTGG 57.193 50.000 0.00 0.00 0.00 4.85
7948 9456 5.521906 AGTGTATACATCTGTGGTAGCTG 57.478 43.478 9.18 0.00 0.00 4.24
7949 9457 5.201243 AGTGTATACATCTGTGGTAGCTGA 58.799 41.667 9.18 0.00 0.00 4.26
7950 9458 5.300539 AGTGTATACATCTGTGGTAGCTGAG 59.699 44.000 9.18 0.00 0.00 3.35
7989 9500 4.219725 GGCTGGTGCAGGTTCTTATTTTTA 59.780 41.667 0.00 0.00 41.91 1.52
8060 9574 8.261522 AGAAAGAAATAGGAAGTGAGTATCCAC 58.738 37.037 0.00 0.00 38.23 4.02
8083 9597 0.038166 GCAATGTCTGGACTTCCCCA 59.962 55.000 2.38 0.00 34.29 4.96
8190 9707 5.755849 TGAGAGTATATGTGTGTCCTCTGA 58.244 41.667 0.00 0.00 29.86 3.27
8223 9743 6.648879 AAAAATCGGTGAAAATCCTTCAGA 57.351 33.333 0.00 0.00 0.00 3.27
8227 9747 4.651778 TCGGTGAAAATCCTTCAGATGTT 58.348 39.130 0.00 0.00 34.91 2.71
8230 9750 5.411361 CGGTGAAAATCCTTCAGATGTTGTA 59.589 40.000 0.00 0.00 32.13 2.41
8231 9751 6.402550 CGGTGAAAATCCTTCAGATGTTGTAG 60.403 42.308 0.00 0.00 32.13 2.74
8232 9752 6.431234 GGTGAAAATCCTTCAGATGTTGTAGT 59.569 38.462 0.00 0.00 32.13 2.73
8233 9753 7.606456 GGTGAAAATCCTTCAGATGTTGTAGTA 59.394 37.037 0.00 0.00 32.13 1.82
8349 10257 2.817844 GTGGTGGGATCTTACAACCAAC 59.182 50.000 0.00 0.00 41.08 3.77
8385 10293 2.700694 GCCACGTGCGTTATCATAAAC 58.299 47.619 10.91 0.00 0.00 2.01
8386 10294 2.094575 GCCACGTGCGTTATCATAAACA 59.905 45.455 10.91 0.00 0.00 2.83
8388 10296 4.713806 CCACGTGCGTTATCATAAACAAA 58.286 39.130 10.91 0.00 0.00 2.83
8389 10297 5.328691 CCACGTGCGTTATCATAAACAAAT 58.671 37.500 10.91 0.00 0.00 2.32
8390 10298 5.226978 CCACGTGCGTTATCATAAACAAATG 59.773 40.000 10.91 0.00 0.00 2.32
8391 10299 5.792962 CACGTGCGTTATCATAAACAAATGT 59.207 36.000 0.82 0.00 0.00 2.71
8392 10300 6.956520 CACGTGCGTTATCATAAACAAATGTA 59.043 34.615 0.82 0.00 0.00 2.29
8393 10301 7.478978 CACGTGCGTTATCATAAACAAATGTAA 59.521 33.333 0.82 0.00 0.00 2.41
8394 10302 7.690637 ACGTGCGTTATCATAAACAAATGTAAG 59.309 33.333 0.00 0.00 0.00 2.34
8396 10304 8.995906 GTGCGTTATCATAAACAAATGTAAGAC 58.004 33.333 0.00 0.00 0.00 3.01
8397 10305 7.900864 TGCGTTATCATAAACAAATGTAAGACG 59.099 33.333 0.00 0.00 0.00 4.18
8398 10306 7.901377 GCGTTATCATAAACAAATGTAAGACGT 59.099 33.333 0.00 0.00 0.00 4.34
8399 10307 9.749490 CGTTATCATAAACAAATGTAAGACGTT 57.251 29.630 0.00 0.00 0.00 3.99
8403 10311 7.731720 TCATAAACAAATGTAAGACGTTACGG 58.268 34.615 10.20 0.00 41.44 4.02
8406 10314 4.240096 ACAAATGTAAGACGTTACGGAGG 58.760 43.478 10.20 0.00 41.44 4.30
8407 10315 3.515330 AATGTAAGACGTTACGGAGGG 57.485 47.619 10.20 0.00 41.44 4.30
8408 10316 2.198827 TGTAAGACGTTACGGAGGGA 57.801 50.000 10.20 0.00 41.44 4.20
8409 10317 2.086869 TGTAAGACGTTACGGAGGGAG 58.913 52.381 10.20 0.00 41.44 4.30
8410 10318 2.087646 GTAAGACGTTACGGAGGGAGT 58.912 52.381 10.20 0.00 29.52 3.85
8412 10320 2.725221 AGACGTTACGGAGGGAGTAT 57.275 50.000 10.20 0.00 0.00 2.12
8413 10321 3.845781 AGACGTTACGGAGGGAGTATA 57.154 47.619 10.20 0.00 0.00 1.47
8414 10322 4.363991 AGACGTTACGGAGGGAGTATAT 57.636 45.455 10.20 0.00 0.00 0.86
8415 10323 4.070716 AGACGTTACGGAGGGAGTATATG 58.929 47.826 10.20 0.00 0.00 1.78
8416 10324 3.152341 ACGTTACGGAGGGAGTATATGG 58.848 50.000 10.20 0.00 0.00 2.74
8417 10325 2.094854 CGTTACGGAGGGAGTATATGGC 60.095 54.545 0.00 0.00 0.00 4.40
8418 10326 2.895404 GTTACGGAGGGAGTATATGGCA 59.105 50.000 0.00 0.00 0.00 4.92
8419 10327 2.327325 ACGGAGGGAGTATATGGCAT 57.673 50.000 4.88 4.88 0.00 4.40
8420 10328 1.902508 ACGGAGGGAGTATATGGCATG 59.097 52.381 10.98 0.00 0.00 4.06
8421 10329 1.902508 CGGAGGGAGTATATGGCATGT 59.097 52.381 10.98 6.03 0.00 3.21
8423 10331 2.026822 GGAGGGAGTATATGGCATGTGG 60.027 54.545 10.98 0.00 0.00 4.17
8424 10332 1.988107 AGGGAGTATATGGCATGTGGG 59.012 52.381 10.98 0.00 0.00 4.61
8426 10334 2.553028 GGGAGTATATGGCATGTGGGTG 60.553 54.545 10.98 0.00 0.00 4.61
8427 10335 2.371841 GGAGTATATGGCATGTGGGTGA 59.628 50.000 10.98 0.00 0.00 4.02
8428 10336 3.009473 GGAGTATATGGCATGTGGGTGAT 59.991 47.826 10.98 0.00 0.00 3.06
8431 10339 4.846367 AGTATATGGCATGTGGGTGATACT 59.154 41.667 10.98 10.26 0.00 2.12
8432 10340 4.729552 ATATGGCATGTGGGTGATACTT 57.270 40.909 10.98 0.00 0.00 2.24
8433 10341 5.841267 ATATGGCATGTGGGTGATACTTA 57.159 39.130 10.98 0.00 0.00 2.24
8435 10343 5.841267 ATGGCATGTGGGTGATACTTATA 57.159 39.130 0.00 0.00 0.00 0.98
8436 10344 4.968259 TGGCATGTGGGTGATACTTATAC 58.032 43.478 0.00 0.00 0.00 1.47
8438 10346 5.104318 TGGCATGTGGGTGATACTTATACAA 60.104 40.000 0.00 0.00 0.00 2.41
8439 10347 6.003950 GGCATGTGGGTGATACTTATACAAT 58.996 40.000 0.00 0.00 0.00 2.71
8440 10348 7.165485 GGCATGTGGGTGATACTTATACAATA 58.835 38.462 0.00 0.00 0.00 1.90
8441 10349 7.119262 GGCATGTGGGTGATACTTATACAATAC 59.881 40.741 0.00 0.00 0.00 1.89
8442 10350 7.878127 GCATGTGGGTGATACTTATACAATACT 59.122 37.037 0.00 0.00 0.00 2.12
8443 10351 9.778741 CATGTGGGTGATACTTATACAATACTT 57.221 33.333 0.00 0.00 0.00 2.24
8446 10354 9.269453 GTGGGTGATACTTATACAATACTTTCC 57.731 37.037 0.00 0.00 0.00 3.13
8447 10355 8.994500 TGGGTGATACTTATACAATACTTTCCA 58.006 33.333 0.00 0.00 0.00 3.53
8455 10363 9.174166 ACTTATACAATACTTTCCATTGTGACC 57.826 33.333 10.20 0.00 44.30 4.02
8456 10364 9.173021 CTTATACAATACTTTCCATTGTGACCA 57.827 33.333 10.20 0.00 44.30 4.02
8457 10365 5.964958 ACAATACTTTCCATTGTGACCAG 57.035 39.130 0.17 0.00 43.27 4.00
8458 10366 4.218417 ACAATACTTTCCATTGTGACCAGC 59.782 41.667 0.17 0.00 43.27 4.85
8459 10367 1.238439 ACTTTCCATTGTGACCAGCG 58.762 50.000 0.00 0.00 0.00 5.18
8460 10368 1.238439 CTTTCCATTGTGACCAGCGT 58.762 50.000 0.00 0.00 0.00 5.07
8462 10370 1.686355 TTCCATTGTGACCAGCGTTT 58.314 45.000 0.00 0.00 0.00 3.60
8463 10371 1.686355 TCCATTGTGACCAGCGTTTT 58.314 45.000 0.00 0.00 0.00 2.43
8464 10372 1.606668 TCCATTGTGACCAGCGTTTTC 59.393 47.619 0.00 0.00 0.00 2.29
8466 10374 0.591170 ATTGTGACCAGCGTTTTCCG 59.409 50.000 0.00 0.00 40.40 4.30
8468 10376 0.745128 TGTGACCAGCGTTTTCCGTT 60.745 50.000 0.00 0.00 39.32 4.44
8469 10377 0.316689 GTGACCAGCGTTTTCCGTTG 60.317 55.000 0.00 0.00 46.05 4.10
8470 10378 0.745128 TGACCAGCGTTTTCCGTTGT 60.745 50.000 0.00 0.00 45.15 3.32
8471 10379 0.316689 GACCAGCGTTTTCCGTTGTG 60.317 55.000 0.00 0.00 45.15 3.33
8472 10380 0.745128 ACCAGCGTTTTCCGTTGTGA 60.745 50.000 0.00 0.00 45.15 3.58
8475 10383 0.745128 AGCGTTTTCCGTTGTGACCA 60.745 50.000 0.00 0.00 39.32 4.02
8476 10384 0.316689 GCGTTTTCCGTTGTGACCAG 60.317 55.000 0.00 0.00 39.32 4.00
8477 10385 0.316689 CGTTTTCCGTTGTGACCAGC 60.317 55.000 0.00 0.00 0.00 4.85
8478 10386 0.316689 GTTTTCCGTTGTGACCAGCG 60.317 55.000 0.00 0.00 43.89 5.18
8479 10387 0.745128 TTTTCCGTTGTGACCAGCGT 60.745 50.000 0.00 0.00 42.90 5.07
8480 10388 0.745128 TTTCCGTTGTGACCAGCGTT 60.745 50.000 0.00 0.00 42.90 4.84
8481 10389 0.104487 TTCCGTTGTGACCAGCGTTA 59.896 50.000 0.00 0.00 42.90 3.18
8484 10392 1.424403 CGTTGTGACCAGCGTTATGA 58.576 50.000 0.00 0.00 40.01 2.15
8485 10393 1.999735 CGTTGTGACCAGCGTTATGAT 59.000 47.619 0.00 0.00 40.01 2.45
8486 10394 2.029244 CGTTGTGACCAGCGTTATGATC 59.971 50.000 0.00 0.00 40.01 2.92
8487 10395 2.309528 TGTGACCAGCGTTATGATCC 57.690 50.000 0.00 0.00 0.00 3.36
8488 10396 1.134521 TGTGACCAGCGTTATGATCCC 60.135 52.381 0.00 0.00 0.00 3.85
8489 10397 0.468226 TGACCAGCGTTATGATCCCC 59.532 55.000 0.00 0.00 0.00 4.81
8490 10398 0.600255 GACCAGCGTTATGATCCCCG 60.600 60.000 0.00 0.00 0.00 5.73
8491 10399 1.961277 CCAGCGTTATGATCCCCGC 60.961 63.158 7.15 7.15 46.07 6.13
8493 10401 3.330275 GCGTTATGATCCCCGCAC 58.670 61.111 9.57 0.00 45.12 5.34
8494 10402 1.522806 GCGTTATGATCCCCGCACA 60.523 57.895 9.57 0.00 45.12 4.57
8497 10405 1.531149 CGTTATGATCCCCGCACAATC 59.469 52.381 0.00 0.00 0.00 2.67
8498 10406 2.571212 GTTATGATCCCCGCACAATCA 58.429 47.619 0.00 0.00 34.17 2.57
8500 10408 0.548031 ATGATCCCCGCACAATCACT 59.452 50.000 0.00 0.00 32.58 3.41
8501 10409 0.107703 TGATCCCCGCACAATCACTC 60.108 55.000 0.00 0.00 0.00 3.51
8502 10410 0.815615 GATCCCCGCACAATCACTCC 60.816 60.000 0.00 0.00 0.00 3.85
8503 10411 2.270874 ATCCCCGCACAATCACTCCC 62.271 60.000 0.00 0.00 0.00 4.30
8506 10414 1.746615 CCGCACAATCACTCCCCAG 60.747 63.158 0.00 0.00 0.00 4.45
8507 10415 2.401766 CGCACAATCACTCCCCAGC 61.402 63.158 0.00 0.00 0.00 4.85
8509 10417 1.687612 CACAATCACTCCCCAGCCT 59.312 57.895 0.00 0.00 0.00 4.58
8510 10418 0.393537 CACAATCACTCCCCAGCCTC 60.394 60.000 0.00 0.00 0.00 4.70
8511 10419 1.225704 CAATCACTCCCCAGCCTCC 59.774 63.158 0.00 0.00 0.00 4.30
8512 10420 1.229951 AATCACTCCCCAGCCTCCA 60.230 57.895 0.00 0.00 0.00 3.86
8513 10421 0.846427 AATCACTCCCCAGCCTCCAA 60.846 55.000 0.00 0.00 0.00 3.53
8514 10422 0.846427 ATCACTCCCCAGCCTCCAAA 60.846 55.000 0.00 0.00 0.00 3.28
8515 10423 1.303643 CACTCCCCAGCCTCCAAAC 60.304 63.158 0.00 0.00 0.00 2.93
8516 10424 1.464198 ACTCCCCAGCCTCCAAACT 60.464 57.895 0.00 0.00 0.00 2.66
8517 10425 0.178873 ACTCCCCAGCCTCCAAACTA 60.179 55.000 0.00 0.00 0.00 2.24
8518 10426 0.543749 CTCCCCAGCCTCCAAACTAG 59.456 60.000 0.00 0.00 0.00 2.57
8519 10427 0.178873 TCCCCAGCCTCCAAACTAGT 60.179 55.000 0.00 0.00 0.00 2.57
8520 10428 0.035056 CCCCAGCCTCCAAACTAGTG 60.035 60.000 0.00 0.00 0.00 2.74
8521 10429 0.693049 CCCAGCCTCCAAACTAGTGT 59.307 55.000 0.00 0.00 0.00 3.55
8522 10430 1.906574 CCCAGCCTCCAAACTAGTGTA 59.093 52.381 0.00 0.00 0.00 2.90
8523 10431 2.354805 CCCAGCCTCCAAACTAGTGTAC 60.355 54.545 0.00 0.00 0.00 2.90
8524 10432 2.301870 CCAGCCTCCAAACTAGTGTACA 59.698 50.000 0.00 0.00 0.00 2.90
8525 10433 3.244422 CCAGCCTCCAAACTAGTGTACAA 60.244 47.826 0.00 0.00 0.00 2.41
8526 10434 4.565652 CCAGCCTCCAAACTAGTGTACAAT 60.566 45.833 0.00 0.00 0.00 2.71
8527 10435 4.393062 CAGCCTCCAAACTAGTGTACAATG 59.607 45.833 5.98 0.00 0.00 2.82
8528 10436 4.286032 AGCCTCCAAACTAGTGTACAATGA 59.714 41.667 5.98 0.00 0.00 2.57
8529 10437 5.045578 AGCCTCCAAACTAGTGTACAATGAT 60.046 40.000 5.98 0.00 0.00 2.45
8530 10438 5.294552 GCCTCCAAACTAGTGTACAATGATC 59.705 44.000 5.98 0.00 0.00 2.92
8531 10439 6.644347 CCTCCAAACTAGTGTACAATGATCT 58.356 40.000 5.98 0.00 0.00 2.75
8532 10440 7.106239 CCTCCAAACTAGTGTACAATGATCTT 58.894 38.462 5.98 0.00 0.00 2.40
8533 10441 7.278868 CCTCCAAACTAGTGTACAATGATCTTC 59.721 40.741 5.98 0.00 0.00 2.87
8534 10442 7.676004 TCCAAACTAGTGTACAATGATCTTCA 58.324 34.615 5.98 0.00 0.00 3.02
8535 10443 7.819415 TCCAAACTAGTGTACAATGATCTTCAG 59.181 37.037 5.98 0.00 0.00 3.02
8536 10444 7.413438 CCAAACTAGTGTACAATGATCTTCAGC 60.413 40.741 5.98 0.00 0.00 4.26
8537 10445 6.286240 ACTAGTGTACAATGATCTTCAGCA 57.714 37.500 5.98 0.00 0.00 4.41
8538 10446 6.882656 ACTAGTGTACAATGATCTTCAGCAT 58.117 36.000 5.98 0.00 0.00 3.79
8539 10447 8.011844 ACTAGTGTACAATGATCTTCAGCATA 57.988 34.615 5.98 0.00 0.00 3.14
8540 10448 7.923344 ACTAGTGTACAATGATCTTCAGCATAC 59.077 37.037 5.98 0.00 0.00 2.39
8541 10449 6.051717 AGTGTACAATGATCTTCAGCATACC 58.948 40.000 0.00 0.00 0.00 2.73
8542 10450 6.051717 GTGTACAATGATCTTCAGCATACCT 58.948 40.000 0.00 0.00 0.00 3.08
8543 10451 6.540189 GTGTACAATGATCTTCAGCATACCTT 59.460 38.462 0.00 0.00 0.00 3.50
8544 10452 6.539826 TGTACAATGATCTTCAGCATACCTTG 59.460 38.462 0.00 0.00 0.00 3.61
8545 10453 5.748402 ACAATGATCTTCAGCATACCTTGA 58.252 37.500 0.00 0.00 0.00 3.02
8546 10454 5.821470 ACAATGATCTTCAGCATACCTTGAG 59.179 40.000 0.00 0.00 0.00 3.02
8547 10455 5.627182 ATGATCTTCAGCATACCTTGAGT 57.373 39.130 0.00 0.00 0.00 3.41
8548 10456 5.426689 TGATCTTCAGCATACCTTGAGTT 57.573 39.130 0.00 0.00 0.00 3.01
8549 10457 5.181009 TGATCTTCAGCATACCTTGAGTTG 58.819 41.667 0.00 0.00 0.00 3.16
8550 10458 3.942829 TCTTCAGCATACCTTGAGTTGG 58.057 45.455 0.00 0.00 0.00 3.77
8551 10459 3.327757 TCTTCAGCATACCTTGAGTTGGT 59.672 43.478 0.00 0.00 41.28 3.67
8552 10460 3.057969 TCAGCATACCTTGAGTTGGTG 57.942 47.619 0.00 0.00 38.42 4.17
8553 10461 1.470098 CAGCATACCTTGAGTTGGTGC 59.530 52.381 0.00 0.00 38.42 5.01
8554 10462 0.811281 GCATACCTTGAGTTGGTGCC 59.189 55.000 0.00 0.00 38.42 5.01
8555 10463 1.614317 GCATACCTTGAGTTGGTGCCT 60.614 52.381 0.00 0.00 38.42 4.75
8556 10464 2.359900 CATACCTTGAGTTGGTGCCTC 58.640 52.381 0.00 0.00 38.42 4.70
8557 10465 0.690762 TACCTTGAGTTGGTGCCTCC 59.309 55.000 0.00 0.00 38.42 4.30
8558 10466 1.303643 CCTTGAGTTGGTGCCTCCC 60.304 63.158 0.00 0.00 34.77 4.30
8559 10467 1.455849 CTTGAGTTGGTGCCTCCCA 59.544 57.895 0.00 0.00 34.77 4.37
8560 10468 0.038744 CTTGAGTTGGTGCCTCCCAT 59.961 55.000 0.00 0.00 33.60 4.00
8561 10469 0.038166 TTGAGTTGGTGCCTCCCATC 59.962 55.000 0.00 0.00 33.60 3.51
8562 10470 0.842030 TGAGTTGGTGCCTCCCATCT 60.842 55.000 0.00 0.00 37.27 2.90
8563 10471 1.204146 GAGTTGGTGCCTCCCATCTA 58.796 55.000 0.00 0.00 35.22 1.98
8564 10472 1.771255 GAGTTGGTGCCTCCCATCTAT 59.229 52.381 0.00 0.00 35.22 1.98
8565 10473 2.173569 GAGTTGGTGCCTCCCATCTATT 59.826 50.000 0.00 0.00 35.22 1.73
8566 10474 3.391296 GAGTTGGTGCCTCCCATCTATTA 59.609 47.826 0.00 0.00 35.22 0.98
8567 10475 3.392616 AGTTGGTGCCTCCCATCTATTAG 59.607 47.826 0.00 0.00 33.69 1.73
8568 10476 3.344535 TGGTGCCTCCCATCTATTAGA 57.655 47.619 0.00 0.00 34.77 2.10
8569 10477 3.242867 TGGTGCCTCCCATCTATTAGAG 58.757 50.000 0.00 0.00 34.77 2.43
8570 10478 3.243724 GGTGCCTCCCATCTATTAGAGT 58.756 50.000 0.00 0.00 0.00 3.24
8571 10479 3.648545 GGTGCCTCCCATCTATTAGAGTT 59.351 47.826 0.00 0.00 0.00 3.01
8572 10480 4.503991 GGTGCCTCCCATCTATTAGAGTTG 60.504 50.000 0.00 0.00 0.00 3.16
8573 10481 4.101741 GTGCCTCCCATCTATTAGAGTTGT 59.898 45.833 0.00 0.00 0.00 3.32
8574 10482 4.721776 TGCCTCCCATCTATTAGAGTTGTT 59.278 41.667 0.00 0.00 0.00 2.83
8575 10483 5.163301 TGCCTCCCATCTATTAGAGTTGTTC 60.163 44.000 0.00 0.00 0.00 3.18
8576 10484 5.071115 GCCTCCCATCTATTAGAGTTGTTCT 59.929 44.000 0.00 0.00 40.06 3.01
8577 10485 6.740122 GCCTCCCATCTATTAGAGTTGTTCTC 60.740 46.154 0.00 0.00 43.05 2.87
8578 10486 6.239458 CCTCCCATCTATTAGAGTTGTTCTCC 60.239 46.154 0.00 0.00 43.71 3.71
8579 10487 6.444704 TCCCATCTATTAGAGTTGTTCTCCT 58.555 40.000 0.00 0.00 43.71 3.69
8580 10488 6.903534 TCCCATCTATTAGAGTTGTTCTCCTT 59.096 38.462 0.00 0.00 43.71 3.36
8581 10489 7.403231 TCCCATCTATTAGAGTTGTTCTCCTTT 59.597 37.037 0.00 0.00 43.71 3.11
8582 10490 7.497249 CCCATCTATTAGAGTTGTTCTCCTTTG 59.503 40.741 0.00 0.00 43.71 2.77
8583 10491 8.260818 CCATCTATTAGAGTTGTTCTCCTTTGA 58.739 37.037 0.00 0.00 43.71 2.69
8584 10492 9.092876 CATCTATTAGAGTTGTTCTCCTTTGAC 57.907 37.037 0.00 0.00 43.71 3.18
8585 10493 8.423906 TCTATTAGAGTTGTTCTCCTTTGACT 57.576 34.615 0.00 0.00 43.71 3.41
8586 10494 8.524487 TCTATTAGAGTTGTTCTCCTTTGACTC 58.476 37.037 0.00 0.00 43.71 3.36
8587 10495 4.344359 AGAGTTGTTCTCCTTTGACTCC 57.656 45.455 0.00 0.00 43.71 3.85
8588 10496 3.071747 AGAGTTGTTCTCCTTTGACTCCC 59.928 47.826 0.00 0.00 43.71 4.30
8589 10497 3.049344 AGTTGTTCTCCTTTGACTCCCT 58.951 45.455 0.00 0.00 0.00 4.20
8590 10498 3.071747 AGTTGTTCTCCTTTGACTCCCTC 59.928 47.826 0.00 0.00 0.00 4.30
8591 10499 1.618837 TGTTCTCCTTTGACTCCCTCG 59.381 52.381 0.00 0.00 0.00 4.63
8592 10500 1.619332 GTTCTCCTTTGACTCCCTCGT 59.381 52.381 0.00 0.00 0.00 4.18
8593 10501 2.011122 TCTCCTTTGACTCCCTCGTT 57.989 50.000 0.00 0.00 0.00 3.85
8594 10502 1.893801 TCTCCTTTGACTCCCTCGTTC 59.106 52.381 0.00 0.00 0.00 3.95
8595 10503 0.974383 TCCTTTGACTCCCTCGTTCC 59.026 55.000 0.00 0.00 0.00 3.62
8596 10504 0.977395 CCTTTGACTCCCTCGTTCCT 59.023 55.000 0.00 0.00 0.00 3.36
8597 10505 1.066787 CCTTTGACTCCCTCGTTCCTC 60.067 57.143 0.00 0.00 0.00 3.71
8598 10506 0.601558 TTTGACTCCCTCGTTCCTCG 59.398 55.000 0.00 0.00 41.41 4.63
8599 10507 1.248785 TTGACTCCCTCGTTCCTCGG 61.249 60.000 0.00 0.00 40.32 4.63
8600 10508 3.066233 GACTCCCTCGTTCCTCGGC 62.066 68.421 0.00 0.00 40.32 5.54
8601 10509 3.839432 CTCCCTCGTTCCTCGGCC 61.839 72.222 0.00 0.00 40.32 6.13
8602 10510 4.689549 TCCCTCGTTCCTCGGCCA 62.690 66.667 2.24 0.00 40.32 5.36
8603 10511 3.470888 CCCTCGTTCCTCGGCCAT 61.471 66.667 2.24 0.00 40.32 4.40
8604 10512 2.202932 CCTCGTTCCTCGGCCATG 60.203 66.667 2.24 0.00 40.32 3.66
8605 10513 2.892425 CTCGTTCCTCGGCCATGC 60.892 66.667 2.24 0.00 40.32 4.06
8606 10514 3.664025 CTCGTTCCTCGGCCATGCA 62.664 63.158 2.24 0.00 40.32 3.96
8607 10515 2.514592 CGTTCCTCGGCCATGCAT 60.515 61.111 2.24 0.00 35.71 3.96
8608 10516 2.537560 CGTTCCTCGGCCATGCATC 61.538 63.158 2.24 0.00 35.71 3.91
8609 10517 1.153086 GTTCCTCGGCCATGCATCT 60.153 57.895 2.24 0.00 0.00 2.90
8610 10518 1.146930 TTCCTCGGCCATGCATCTC 59.853 57.895 2.24 0.00 0.00 2.75
8611 10519 1.625417 TTCCTCGGCCATGCATCTCA 61.625 55.000 2.24 0.00 0.00 3.27
8612 10520 1.890979 CCTCGGCCATGCATCTCAC 60.891 63.158 2.24 0.00 0.00 3.51
8613 10521 1.890979 CTCGGCCATGCATCTCACC 60.891 63.158 2.24 0.00 0.00 4.02
8614 10522 2.191375 CGGCCATGCATCTCACCT 59.809 61.111 2.24 0.00 0.00 4.00
8615 10523 2.184830 CGGCCATGCATCTCACCTG 61.185 63.158 2.24 0.00 0.00 4.00
8616 10524 1.225426 GGCCATGCATCTCACCTGA 59.775 57.895 0.00 0.00 0.00 3.86
8617 10525 0.394762 GGCCATGCATCTCACCTGAA 60.395 55.000 0.00 0.00 0.00 3.02
8618 10526 1.466856 GCCATGCATCTCACCTGAAA 58.533 50.000 0.00 0.00 0.00 2.69
8619 10527 1.820519 GCCATGCATCTCACCTGAAAA 59.179 47.619 0.00 0.00 0.00 2.29
8620 10528 2.231964 GCCATGCATCTCACCTGAAAAA 59.768 45.455 0.00 0.00 0.00 1.94
8621 10529 3.118884 GCCATGCATCTCACCTGAAAAAT 60.119 43.478 0.00 0.00 0.00 1.82
8622 10530 4.679662 CCATGCATCTCACCTGAAAAATC 58.320 43.478 0.00 0.00 0.00 2.17
8623 10531 4.158949 CCATGCATCTCACCTGAAAAATCA 59.841 41.667 0.00 0.00 0.00 2.57
8624 10532 5.336929 CCATGCATCTCACCTGAAAAATCAA 60.337 40.000 0.00 0.00 0.00 2.57
8625 10533 5.125100 TGCATCTCACCTGAAAAATCAAC 57.875 39.130 0.00 0.00 0.00 3.18
8626 10534 4.828939 TGCATCTCACCTGAAAAATCAACT 59.171 37.500 0.00 0.00 0.00 3.16
8627 10535 5.048504 TGCATCTCACCTGAAAAATCAACTC 60.049 40.000 0.00 0.00 0.00 3.01
8628 10536 5.182760 GCATCTCACCTGAAAAATCAACTCT 59.817 40.000 0.00 0.00 0.00 3.24
8629 10537 6.622462 GCATCTCACCTGAAAAATCAACTCTC 60.622 42.308 0.00 0.00 0.00 3.20
8630 10538 5.308825 TCTCACCTGAAAAATCAACTCTCC 58.691 41.667 0.00 0.00 0.00 3.71
8631 10539 4.065088 TCACCTGAAAAATCAACTCTCCG 58.935 43.478 0.00 0.00 0.00 4.63
8632 10540 2.814336 ACCTGAAAAATCAACTCTCCGC 59.186 45.455 0.00 0.00 0.00 5.54
8633 10541 3.077359 CCTGAAAAATCAACTCTCCGCT 58.923 45.455 0.00 0.00 0.00 5.52
8634 10542 3.126000 CCTGAAAAATCAACTCTCCGCTC 59.874 47.826 0.00 0.00 0.00 5.03
8635 10543 3.738982 TGAAAAATCAACTCTCCGCTCA 58.261 40.909 0.00 0.00 0.00 4.26
8636 10544 3.498397 TGAAAAATCAACTCTCCGCTCAC 59.502 43.478 0.00 0.00 0.00 3.51
8637 10545 1.714794 AAATCAACTCTCCGCTCACG 58.285 50.000 0.00 0.00 39.67 4.35
8638 10546 0.603569 AATCAACTCTCCGCTCACGT 59.396 50.000 0.00 0.00 37.70 4.49
8639 10547 0.171455 ATCAACTCTCCGCTCACGTC 59.829 55.000 0.00 0.00 37.70 4.34
8640 10548 1.170290 TCAACTCTCCGCTCACGTCA 61.170 55.000 0.00 0.00 37.70 4.35
8641 10549 0.109086 CAACTCTCCGCTCACGTCAT 60.109 55.000 0.00 0.00 37.70 3.06
8642 10550 0.603569 AACTCTCCGCTCACGTCATT 59.396 50.000 0.00 0.00 37.70 2.57
8643 10551 0.171455 ACTCTCCGCTCACGTCATTC 59.829 55.000 0.00 0.00 37.70 2.67
8644 10552 0.453793 CTCTCCGCTCACGTCATTCT 59.546 55.000 0.00 0.00 37.70 2.40
8645 10553 0.888619 TCTCCGCTCACGTCATTCTT 59.111 50.000 0.00 0.00 37.70 2.52
8646 10554 0.994995 CTCCGCTCACGTCATTCTTG 59.005 55.000 0.00 0.00 37.70 3.02
8647 10555 0.317160 TCCGCTCACGTCATTCTTGT 59.683 50.000 0.00 0.00 37.70 3.16
8648 10556 1.148310 CCGCTCACGTCATTCTTGTT 58.852 50.000 0.00 0.00 37.70 2.83
8649 10557 2.029739 TCCGCTCACGTCATTCTTGTTA 60.030 45.455 0.00 0.00 37.70 2.41
8650 10558 2.930040 CCGCTCACGTCATTCTTGTTAT 59.070 45.455 0.00 0.00 37.70 1.89
8651 10559 3.370978 CCGCTCACGTCATTCTTGTTATT 59.629 43.478 0.00 0.00 37.70 1.40
8652 10560 4.492570 CCGCTCACGTCATTCTTGTTATTC 60.493 45.833 0.00 0.00 37.70 1.75
8653 10561 4.492570 CGCTCACGTCATTCTTGTTATTCC 60.493 45.833 0.00 0.00 33.53 3.01
8654 10562 4.391830 GCTCACGTCATTCTTGTTATTCCA 59.608 41.667 0.00 0.00 0.00 3.53
8655 10563 5.065218 GCTCACGTCATTCTTGTTATTCCAT 59.935 40.000 0.00 0.00 0.00 3.41
8656 10564 6.662414 TCACGTCATTCTTGTTATTCCATC 57.338 37.500 0.00 0.00 0.00 3.51
8669 10577 7.743116 TGTTATTCCATCTTAGGTACCTTCA 57.257 36.000 22.11 6.52 0.00 3.02
8698 10606 4.876107 GGTTCATAGTACATCAACCACCTG 59.124 45.833 9.84 0.00 37.13 4.00
8725 10633 2.170607 ACCTATATGGCGTGTTGAGCTT 59.829 45.455 0.00 0.00 40.22 3.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 7.792374 TCTAGGTTAAGCATGTTGATCATTC 57.208 36.000 7.52 0.00 34.09 2.67
82 83 1.698532 TCTAGGGTTTAAACACGGGCA 59.301 47.619 19.57 4.24 37.41 5.36
87 88 4.684214 CGGGGGTATCTAGGGTTTAAACAC 60.684 50.000 19.57 16.47 0.00 3.32
130 131 4.078863 AGCCTCTCCTCTATGGACTAAACT 60.079 45.833 0.00 0.00 40.56 2.66
131 132 4.219919 AGCCTCTCCTCTATGGACTAAAC 58.780 47.826 0.00 0.00 40.56 2.01
214 215 9.631257 TTTGATATTGATTGTGATGGAGTACAT 57.369 29.630 0.00 0.00 44.18 2.29
215 216 9.460019 TTTTGATATTGATTGTGATGGAGTACA 57.540 29.630 0.00 0.00 0.00 2.90
377 381 1.982938 ACCGCCAGGGACTACTGTC 60.983 63.158 0.00 0.00 43.47 3.51
414 419 1.371337 TTGCTTGCTCTAGCGGCATG 61.371 55.000 18.32 12.59 45.86 4.06
415 420 1.078214 TTGCTTGCTCTAGCGGCAT 60.078 52.632 18.32 0.00 45.86 4.40
439 444 7.013750 ACTCGTGTGATCACTCATTATCATACT 59.986 37.037 25.55 0.00 40.23 2.12
461 466 6.537566 CAAGAGGTGAAAATTATGTCACTCG 58.462 40.000 13.50 0.00 43.06 4.18
520 525 7.416890 CCCCTCGCTAATTACTAATAGATCCTG 60.417 44.444 0.00 0.00 0.00 3.86
583 589 3.390967 TCATAAGATCATCGCCCTCCAAA 59.609 43.478 0.00 0.00 0.00 3.28
587 593 2.028658 TGCTCATAAGATCATCGCCCTC 60.029 50.000 0.00 0.00 0.00 4.30
592 598 5.536260 TCTTTCCTGCTCATAAGATCATCG 58.464 41.667 0.00 0.00 0.00 3.84
595 601 6.407865 CCTTCTCTTTCCTGCTCATAAGATCA 60.408 42.308 0.00 0.00 0.00 2.92
602 608 2.093764 CGTCCTTCTCTTTCCTGCTCAT 60.094 50.000 0.00 0.00 0.00 2.90
688 879 8.959548 TGGTTTCTAGTACATCGAACATAAGTA 58.040 33.333 0.00 0.00 0.00 2.24
707 898 6.702716 TCCGTTTCAAAATAAGTGGTTTCT 57.297 33.333 0.00 0.00 0.00 2.52
731 922 6.321690 AGCGTGTCAGAATTAATAGTACCTCT 59.678 38.462 0.00 0.00 0.00 3.69
749 940 4.025015 TCCGAGAAATTACTAGCGTGTC 57.975 45.455 0.00 0.00 0.00 3.67
752 943 3.698040 TCCTTCCGAGAAATTACTAGCGT 59.302 43.478 0.00 0.00 0.00 5.07
834 1028 6.071728 ACTCTTTGATAAACAAATGGGCAGAG 60.072 38.462 0.00 0.00 45.63 3.35
865 1059 7.508636 TCTGATCTATCTATGGGATCTATTGGC 59.491 40.741 0.00 0.00 37.38 4.52
1094 1291 1.074951 TGGTCAGACTCTGAGGCGA 59.925 57.895 9.13 5.35 41.46 5.54
1144 1341 6.299922 GTTTTAGATCCAAGGGAAGATAGGG 58.700 44.000 0.00 0.00 34.34 3.53
1176 1374 1.452108 GATCAAACTGAGGGGGCCG 60.452 63.158 0.00 0.00 0.00 6.13
1353 1551 0.031585 CTCCTCCGTCGTTGAACACA 59.968 55.000 0.00 0.00 0.00 3.72
1385 1583 6.623979 AGCTAAGCTATGATGAATCATCCT 57.376 37.500 19.38 12.76 43.72 3.24
1918 2118 3.546218 CGATGACAGATGCATGAAAGCTG 60.546 47.826 2.46 7.41 34.99 4.24
2078 2278 7.358683 GCAGTGCAATTGACTTTCTTTTATGTC 60.359 37.037 11.09 0.00 0.00 3.06
2083 2283 4.807304 CAGCAGTGCAATTGACTTTCTTTT 59.193 37.500 19.20 0.00 0.00 2.27
2210 2410 2.433604 ACTATCAGTGAGGCATGGAGTG 59.566 50.000 0.00 0.00 0.00 3.51
2620 2836 3.261580 GCAAAACATTAGTGATTGGGGC 58.738 45.455 0.00 0.00 0.00 5.80
3276 3492 8.474006 AAACCAGTGAAAAATGTTAGAAACAC 57.526 30.769 0.00 0.00 45.50 3.32
3886 4103 3.536158 TGCAGTTCGCTATTGTTGAAC 57.464 42.857 6.39 6.39 43.06 3.18
4414 4991 4.263018 AGGCAGAAAGGAAATGAAAAGC 57.737 40.909 0.00 0.00 0.00 3.51
4525 5116 5.857471 TTCAAATATTCCTGCCCTTCATG 57.143 39.130 0.00 0.00 0.00 3.07
4588 5179 2.820767 AAGGCTCCTCGCGAGAAACG 62.821 60.000 36.59 19.94 41.63 3.60
4697 5305 7.758076 AGCCAACTTTTTGTTTAAGTTACTGTC 59.242 33.333 0.00 0.00 42.32 3.51
4699 5307 7.757624 TGAGCCAACTTTTTGTTTAAGTTACTG 59.242 33.333 0.00 0.00 42.32 2.74
4701 5309 8.468720 TTGAGCCAACTTTTTGTTTAAGTTAC 57.531 30.769 0.00 0.00 42.32 2.50
4702 5310 8.524487 TCTTGAGCCAACTTTTTGTTTAAGTTA 58.476 29.630 0.00 0.00 42.32 2.24
4703 5311 7.382898 TCTTGAGCCAACTTTTTGTTTAAGTT 58.617 30.769 0.00 0.00 44.38 2.66
4704 5312 6.930731 TCTTGAGCCAACTTTTTGTTTAAGT 58.069 32.000 0.00 0.00 36.63 2.24
4705 5313 7.706179 TGATCTTGAGCCAACTTTTTGTTTAAG 59.294 33.333 0.00 0.00 36.63 1.85
4706 5314 7.551585 TGATCTTGAGCCAACTTTTTGTTTAA 58.448 30.769 0.00 0.00 36.63 1.52
4707 5315 7.106439 TGATCTTGAGCCAACTTTTTGTTTA 57.894 32.000 0.00 0.00 36.63 2.01
4708 5316 5.976458 TGATCTTGAGCCAACTTTTTGTTT 58.024 33.333 0.00 0.00 36.63 2.83
4709 5317 5.596836 TGATCTTGAGCCAACTTTTTGTT 57.403 34.783 0.00 0.00 39.92 2.83
4710 5318 5.596836 TTGATCTTGAGCCAACTTTTTGT 57.403 34.783 0.00 0.00 0.00 2.83
4711 5319 5.987347 ACATTGATCTTGAGCCAACTTTTTG 59.013 36.000 0.00 0.00 0.00 2.44
4813 5421 5.191323 ACATTCCTATCCAGGGATCATCATC 59.809 44.000 3.62 0.00 38.20 2.92
5102 5867 8.450578 AACAGATCAGTCACAATTTTCAGTAA 57.549 30.769 0.00 0.00 0.00 2.24
5340 6520 8.161425 GGACCAGCTATGTTATTAATCCCTTAA 58.839 37.037 0.00 0.00 0.00 1.85
5416 6597 0.889186 GGGGCCTGCGTTGTATATGG 60.889 60.000 0.84 0.00 0.00 2.74
5489 6670 2.510382 TCAAGTTTGGTCTACCCCAACA 59.490 45.455 11.78 0.00 44.03 3.33
5515 6696 4.304048 TCTCTCTTTTACGGACTCCTCT 57.696 45.455 0.00 0.00 0.00 3.69
5548 6729 3.054655 GGCTAGTTCTTTGGTGATACCCA 60.055 47.826 0.00 0.00 37.50 4.51
5907 7089 9.298774 CAAAGATATGGAAAAAGAGAGATTTGC 57.701 33.333 0.00 0.00 0.00 3.68
6092 7399 4.018779 TCCCAAAATAAGTGACTACAGGGG 60.019 45.833 0.00 0.00 33.41 4.79
6093 7400 4.941873 GTCCCAAAATAAGTGACTACAGGG 59.058 45.833 0.00 0.00 0.00 4.45
6094 7401 5.556915 TGTCCCAAAATAAGTGACTACAGG 58.443 41.667 0.00 0.00 0.00 4.00
6095 7402 6.464222 TCTGTCCCAAAATAAGTGACTACAG 58.536 40.000 1.12 1.12 33.60 2.74
6097 7404 5.875359 CCTCTGTCCCAAAATAAGTGACTAC 59.125 44.000 0.00 0.00 0.00 2.73
6098 7405 5.045869 CCCTCTGTCCCAAAATAAGTGACTA 60.046 44.000 0.00 0.00 0.00 2.59
6139 7454 7.122948 TGTGTCTAGAGGAGAAAGGAGAAATAC 59.877 40.741 0.00 0.00 35.37 1.89
6262 7662 2.704464 TGGGATCTGTGCATCTCAAG 57.296 50.000 0.00 0.00 29.75 3.02
6706 8106 4.582869 TGGAATCAAGTCATGAAGTGAGG 58.417 43.478 13.39 0.00 42.54 3.86
7205 8661 7.611467 ACAAATGTAATATGAAGCAAGGACAGA 59.389 33.333 0.00 0.00 0.00 3.41
7863 9371 3.052642 AGGGGTGTGATGGAATAAGCAAT 60.053 43.478 0.00 0.00 0.00 3.56
7919 9427 7.278461 ACCACAGATGTATACACTATGAGAC 57.722 40.000 7.96 0.00 0.00 3.36
7948 9456 2.300437 AGCCACTTGTACTGAACTCCTC 59.700 50.000 0.00 0.00 0.00 3.71
7949 9457 2.037772 CAGCCACTTGTACTGAACTCCT 59.962 50.000 0.00 0.00 33.10 3.69
7950 9458 2.417719 CAGCCACTTGTACTGAACTCC 58.582 52.381 0.00 0.00 33.10 3.85
8060 9574 1.970917 GAAGTCCAGACATTGCCGCG 61.971 60.000 0.00 0.00 0.00 6.46
8083 9597 5.416083 TGAATTGGACGTAACGATTCAGAT 58.584 37.500 22.19 0.00 41.46 2.90
8221 9738 7.275779 CGCAGATACAAAAGTACTACAACATCT 59.724 37.037 0.00 0.00 0.00 2.90
8223 9743 6.312918 CCGCAGATACAAAAGTACTACAACAT 59.687 38.462 0.00 0.00 0.00 2.71
8227 9747 5.395682 ACCGCAGATACAAAAGTACTACA 57.604 39.130 0.00 0.00 0.00 2.74
8230 9750 9.609346 ATTAAATACCGCAGATACAAAAGTACT 57.391 29.630 0.00 0.00 0.00 2.73
8233 9753 8.545420 CGTATTAAATACCGCAGATACAAAAGT 58.455 33.333 0.00 0.00 32.08 2.66
8273 9793 3.756434 TGTTGCTGCAATAAGTTACCTCC 59.244 43.478 19.11 1.42 0.00 4.30
8369 10277 7.900864 TCTTACATTTGTTTATGATAACGCACG 59.099 33.333 0.00 0.00 0.00 5.34
8377 10285 8.385111 CCGTAACGTCTTACATTTGTTTATGAT 58.615 33.333 0.00 0.00 33.01 2.45
8378 10286 7.598118 TCCGTAACGTCTTACATTTGTTTATGA 59.402 33.333 0.00 0.00 33.01 2.15
8379 10287 7.731720 TCCGTAACGTCTTACATTTGTTTATG 58.268 34.615 0.00 0.00 33.01 1.90
8380 10288 7.063780 CCTCCGTAACGTCTTACATTTGTTTAT 59.936 37.037 0.00 0.00 33.01 1.40
8382 10290 5.178067 CCTCCGTAACGTCTTACATTTGTTT 59.822 40.000 0.00 0.00 33.01 2.83
8383 10291 4.687483 CCTCCGTAACGTCTTACATTTGTT 59.313 41.667 0.00 0.00 33.01 2.83
8384 10292 4.240096 CCTCCGTAACGTCTTACATTTGT 58.760 43.478 0.00 0.00 33.01 2.83
8385 10293 3.615496 CCCTCCGTAACGTCTTACATTTG 59.385 47.826 0.00 0.00 33.01 2.32
8386 10294 3.511146 TCCCTCCGTAACGTCTTACATTT 59.489 43.478 0.00 0.00 33.01 2.32
8388 10296 2.686915 CTCCCTCCGTAACGTCTTACAT 59.313 50.000 0.00 0.00 33.01 2.29
8389 10297 2.086869 CTCCCTCCGTAACGTCTTACA 58.913 52.381 0.00 0.00 33.01 2.41
8390 10298 2.087646 ACTCCCTCCGTAACGTCTTAC 58.912 52.381 0.00 0.00 0.00 2.34
8391 10299 2.496899 ACTCCCTCCGTAACGTCTTA 57.503 50.000 0.00 0.00 0.00 2.10
8392 10300 2.496899 TACTCCCTCCGTAACGTCTT 57.503 50.000 0.00 0.00 0.00 3.01
8393 10301 2.725221 ATACTCCCTCCGTAACGTCT 57.275 50.000 0.00 0.00 0.00 4.18
8394 10302 3.190118 CCATATACTCCCTCCGTAACGTC 59.810 52.174 0.00 0.00 0.00 4.34
8396 10304 2.094854 GCCATATACTCCCTCCGTAACG 60.095 54.545 0.00 0.00 0.00 3.18
8397 10305 2.895404 TGCCATATACTCCCTCCGTAAC 59.105 50.000 0.00 0.00 0.00 2.50
8398 10306 3.247948 TGCCATATACTCCCTCCGTAA 57.752 47.619 0.00 0.00 0.00 3.18
8399 10307 2.984435 TGCCATATACTCCCTCCGTA 57.016 50.000 0.00 0.00 0.00 4.02
8401 10309 1.902508 ACATGCCATATACTCCCTCCG 59.097 52.381 0.00 0.00 0.00 4.63
8402 10310 2.026822 CCACATGCCATATACTCCCTCC 60.027 54.545 0.00 0.00 0.00 4.30
8403 10311 2.026822 CCCACATGCCATATACTCCCTC 60.027 54.545 0.00 0.00 0.00 4.30
8406 10314 2.371841 TCACCCACATGCCATATACTCC 59.628 50.000 0.00 0.00 0.00 3.85
8407 10315 3.769739 TCACCCACATGCCATATACTC 57.230 47.619 0.00 0.00 0.00 2.59
8408 10316 4.846367 AGTATCACCCACATGCCATATACT 59.154 41.667 0.00 0.00 0.00 2.12
8409 10317 5.165961 AGTATCACCCACATGCCATATAC 57.834 43.478 0.00 0.00 0.00 1.47
8410 10318 5.841267 AAGTATCACCCACATGCCATATA 57.159 39.130 0.00 0.00 0.00 0.86
8412 10320 5.841267 ATAAGTATCACCCACATGCCATA 57.159 39.130 0.00 0.00 0.00 2.74
8413 10321 4.729552 ATAAGTATCACCCACATGCCAT 57.270 40.909 0.00 0.00 0.00 4.40
8414 10322 4.410555 TGTATAAGTATCACCCACATGCCA 59.589 41.667 0.00 0.00 0.00 4.92
8415 10323 4.968259 TGTATAAGTATCACCCACATGCC 58.032 43.478 0.00 0.00 0.00 4.40
8416 10324 7.878127 AGTATTGTATAAGTATCACCCACATGC 59.122 37.037 0.00 0.00 0.00 4.06
8417 10325 9.778741 AAGTATTGTATAAGTATCACCCACATG 57.221 33.333 0.00 0.00 0.00 3.21
8419 10327 9.826574 GAAAGTATTGTATAAGTATCACCCACA 57.173 33.333 0.00 0.00 0.00 4.17
8420 10328 9.269453 GGAAAGTATTGTATAAGTATCACCCAC 57.731 37.037 0.00 0.00 0.00 4.61
8421 10329 8.994500 TGGAAAGTATTGTATAAGTATCACCCA 58.006 33.333 0.00 0.00 0.00 4.51
8431 10339 9.173021 CTGGTCACAATGGAAAGTATTGTATAA 57.827 33.333 0.00 0.00 44.50 0.98
8432 10340 7.282224 GCTGGTCACAATGGAAAGTATTGTATA 59.718 37.037 0.00 0.00 44.50 1.47
8433 10341 6.095440 GCTGGTCACAATGGAAAGTATTGTAT 59.905 38.462 0.00 0.00 44.50 2.29
8435 10343 4.218417 GCTGGTCACAATGGAAAGTATTGT 59.782 41.667 0.00 0.00 46.54 2.71
8436 10344 4.672542 CGCTGGTCACAATGGAAAGTATTG 60.673 45.833 0.00 0.00 40.48 1.90
8438 10346 3.009723 CGCTGGTCACAATGGAAAGTAT 58.990 45.455 0.00 0.00 0.00 2.12
8439 10347 2.224426 ACGCTGGTCACAATGGAAAGTA 60.224 45.455 0.00 0.00 0.00 2.24
8440 10348 1.238439 CGCTGGTCACAATGGAAAGT 58.762 50.000 0.00 0.00 0.00 2.66
8441 10349 1.238439 ACGCTGGTCACAATGGAAAG 58.762 50.000 0.00 0.00 0.00 2.62
8442 10350 1.686355 AACGCTGGTCACAATGGAAA 58.314 45.000 0.00 0.00 0.00 3.13
8443 10351 1.686355 AAACGCTGGTCACAATGGAA 58.314 45.000 0.00 0.00 0.00 3.53
8444 10352 1.606668 GAAAACGCTGGTCACAATGGA 59.393 47.619 0.00 0.00 0.00 3.41
8446 10354 1.662876 CGGAAAACGCTGGTCACAATG 60.663 52.381 0.00 0.00 34.82 2.82
8447 10355 0.591170 CGGAAAACGCTGGTCACAAT 59.409 50.000 0.00 0.00 34.82 2.71
8448 10356 2.018544 CGGAAAACGCTGGTCACAA 58.981 52.632 0.00 0.00 34.82 3.33
8449 10357 3.725819 CGGAAAACGCTGGTCACA 58.274 55.556 0.00 0.00 34.82 3.58
8459 10367 0.316689 CGCTGGTCACAACGGAAAAC 60.317 55.000 0.00 0.00 32.82 2.43
8460 10368 0.745128 ACGCTGGTCACAACGGAAAA 60.745 50.000 0.00 0.00 40.32 2.29
8462 10370 0.104487 TAACGCTGGTCACAACGGAA 59.896 50.000 0.00 0.00 40.32 4.30
8463 10371 0.319083 ATAACGCTGGTCACAACGGA 59.681 50.000 0.00 0.00 40.32 4.69
8464 10372 0.442310 CATAACGCTGGTCACAACGG 59.558 55.000 0.00 0.00 40.32 4.44
8466 10374 2.351726 GGATCATAACGCTGGTCACAAC 59.648 50.000 0.00 0.00 0.00 3.32
8468 10376 1.134521 GGGATCATAACGCTGGTCACA 60.135 52.381 0.00 0.00 29.64 3.58
8469 10377 1.583054 GGGATCATAACGCTGGTCAC 58.417 55.000 0.00 0.00 0.00 3.67
8470 10378 0.468226 GGGGATCATAACGCTGGTCA 59.532 55.000 0.00 0.00 0.00 4.02
8471 10379 0.600255 CGGGGATCATAACGCTGGTC 60.600 60.000 0.00 0.00 0.00 4.02
8472 10380 1.445942 CGGGGATCATAACGCTGGT 59.554 57.895 0.00 0.00 0.00 4.00
8477 10385 1.531149 GATTGTGCGGGGATCATAACG 59.469 52.381 0.00 0.00 0.00 3.18
8478 10386 2.290641 GTGATTGTGCGGGGATCATAAC 59.709 50.000 0.00 0.00 32.92 1.89
8479 10387 2.172505 AGTGATTGTGCGGGGATCATAA 59.827 45.455 0.00 0.00 32.92 1.90
8480 10388 1.768275 AGTGATTGTGCGGGGATCATA 59.232 47.619 0.00 0.00 32.92 2.15
8481 10389 0.548031 AGTGATTGTGCGGGGATCAT 59.452 50.000 0.00 0.00 32.92 2.45
8484 10392 1.224592 GGAGTGATTGTGCGGGGAT 59.775 57.895 0.00 0.00 0.00 3.85
8485 10393 2.668632 GGAGTGATTGTGCGGGGA 59.331 61.111 0.00 0.00 0.00 4.81
8486 10394 2.438434 GGGAGTGATTGTGCGGGG 60.438 66.667 0.00 0.00 0.00 5.73
8487 10395 2.438434 GGGGAGTGATTGTGCGGG 60.438 66.667 0.00 0.00 0.00 6.13
8488 10396 1.746615 CTGGGGAGTGATTGTGCGG 60.747 63.158 0.00 0.00 0.00 5.69
8489 10397 2.401766 GCTGGGGAGTGATTGTGCG 61.402 63.158 0.00 0.00 0.00 5.34
8490 10398 2.048603 GGCTGGGGAGTGATTGTGC 61.049 63.158 0.00 0.00 0.00 4.57
8491 10399 0.393537 GAGGCTGGGGAGTGATTGTG 60.394 60.000 0.00 0.00 0.00 3.33
8492 10400 1.566298 GGAGGCTGGGGAGTGATTGT 61.566 60.000 0.00 0.00 0.00 2.71
8493 10401 1.225704 GGAGGCTGGGGAGTGATTG 59.774 63.158 0.00 0.00 0.00 2.67
8494 10402 0.846427 TTGGAGGCTGGGGAGTGATT 60.846 55.000 0.00 0.00 0.00 2.57
8497 10405 1.303643 GTTTGGAGGCTGGGGAGTG 60.304 63.158 0.00 0.00 0.00 3.51
8498 10406 0.178873 TAGTTTGGAGGCTGGGGAGT 60.179 55.000 0.00 0.00 0.00 3.85
8500 10408 0.178873 ACTAGTTTGGAGGCTGGGGA 60.179 55.000 0.00 0.00 0.00 4.81
8501 10409 0.035056 CACTAGTTTGGAGGCTGGGG 60.035 60.000 0.00 0.00 0.00 4.96
8502 10410 0.693049 ACACTAGTTTGGAGGCTGGG 59.307 55.000 0.00 0.00 0.00 4.45
8503 10411 2.301870 TGTACACTAGTTTGGAGGCTGG 59.698 50.000 0.00 0.00 0.00 4.85
8506 10414 4.575885 TCATTGTACACTAGTTTGGAGGC 58.424 43.478 0.00 0.00 0.00 4.70
8507 10415 6.644347 AGATCATTGTACACTAGTTTGGAGG 58.356 40.000 0.00 0.00 0.00 4.30
8509 10417 7.676004 TGAAGATCATTGTACACTAGTTTGGA 58.324 34.615 0.00 0.00 0.00 3.53
8510 10418 7.413438 GCTGAAGATCATTGTACACTAGTTTGG 60.413 40.741 0.00 0.00 0.00 3.28
8511 10419 7.118245 TGCTGAAGATCATTGTACACTAGTTTG 59.882 37.037 0.00 0.00 0.00 2.93
8512 10420 7.161404 TGCTGAAGATCATTGTACACTAGTTT 58.839 34.615 0.00 0.00 0.00 2.66
8513 10421 6.701340 TGCTGAAGATCATTGTACACTAGTT 58.299 36.000 0.00 0.00 0.00 2.24
8514 10422 6.286240 TGCTGAAGATCATTGTACACTAGT 57.714 37.500 0.00 0.00 0.00 2.57
8515 10423 7.383572 GGTATGCTGAAGATCATTGTACACTAG 59.616 40.741 0.00 0.00 0.00 2.57
8516 10424 7.069950 AGGTATGCTGAAGATCATTGTACACTA 59.930 37.037 0.00 0.00 0.00 2.74
8517 10425 6.051717 GGTATGCTGAAGATCATTGTACACT 58.948 40.000 0.00 0.00 0.00 3.55
8518 10426 6.051717 AGGTATGCTGAAGATCATTGTACAC 58.948 40.000 0.00 0.00 0.00 2.90
8519 10427 6.239217 AGGTATGCTGAAGATCATTGTACA 57.761 37.500 0.00 0.00 0.00 2.90
8520 10428 6.763135 TCAAGGTATGCTGAAGATCATTGTAC 59.237 38.462 0.00 0.00 0.00 2.90
8521 10429 6.888105 TCAAGGTATGCTGAAGATCATTGTA 58.112 36.000 0.00 0.00 0.00 2.41
8522 10430 5.748402 TCAAGGTATGCTGAAGATCATTGT 58.252 37.500 0.00 0.00 0.00 2.71
8523 10431 5.821470 ACTCAAGGTATGCTGAAGATCATTG 59.179 40.000 0.00 0.00 0.00 2.82
8524 10432 5.999044 ACTCAAGGTATGCTGAAGATCATT 58.001 37.500 0.00 0.00 0.00 2.57
8525 10433 5.627182 ACTCAAGGTATGCTGAAGATCAT 57.373 39.130 0.00 0.00 0.00 2.45
8526 10434 5.181009 CAACTCAAGGTATGCTGAAGATCA 58.819 41.667 0.00 0.00 0.00 2.92
8527 10435 4.574013 CCAACTCAAGGTATGCTGAAGATC 59.426 45.833 0.00 0.00 0.00 2.75
8528 10436 4.018960 ACCAACTCAAGGTATGCTGAAGAT 60.019 41.667 0.00 0.00 37.67 2.40
8529 10437 3.327757 ACCAACTCAAGGTATGCTGAAGA 59.672 43.478 0.00 0.00 37.67 2.87
8530 10438 3.438087 CACCAACTCAAGGTATGCTGAAG 59.562 47.826 0.00 0.00 37.23 3.02
8531 10439 3.411446 CACCAACTCAAGGTATGCTGAA 58.589 45.455 0.00 0.00 37.23 3.02
8532 10440 2.875672 GCACCAACTCAAGGTATGCTGA 60.876 50.000 0.00 0.00 37.23 4.26
8533 10441 1.470098 GCACCAACTCAAGGTATGCTG 59.530 52.381 0.00 0.00 37.23 4.41
8534 10442 1.614317 GGCACCAACTCAAGGTATGCT 60.614 52.381 4.13 0.00 37.23 3.79
8535 10443 0.811281 GGCACCAACTCAAGGTATGC 59.189 55.000 0.00 0.00 37.23 3.14
8536 10444 2.359900 GAGGCACCAACTCAAGGTATG 58.640 52.381 0.00 0.00 37.23 2.39
8537 10445 1.282157 GGAGGCACCAACTCAAGGTAT 59.718 52.381 0.00 0.00 37.23 2.73
8538 10446 0.690762 GGAGGCACCAACTCAAGGTA 59.309 55.000 0.00 0.00 37.23 3.08
8539 10447 1.456287 GGAGGCACCAACTCAAGGT 59.544 57.895 0.00 0.00 40.85 3.50
8540 10448 1.303643 GGGAGGCACCAACTCAAGG 60.304 63.158 2.69 0.00 41.20 3.61
8541 10449 0.038744 ATGGGAGGCACCAACTCAAG 59.961 55.000 2.69 0.00 45.13 3.02
8542 10450 0.038166 GATGGGAGGCACCAACTCAA 59.962 55.000 2.69 0.00 45.13 3.02
8543 10451 0.842030 AGATGGGAGGCACCAACTCA 60.842 55.000 2.69 0.00 45.13 3.41
8544 10452 1.204146 TAGATGGGAGGCACCAACTC 58.796 55.000 12.92 4.48 45.13 3.01
8545 10453 1.898863 ATAGATGGGAGGCACCAACT 58.101 50.000 13.79 13.79 45.13 3.16
8546 10454 2.736670 AATAGATGGGAGGCACCAAC 57.263 50.000 2.69 1.80 45.13 3.77
8547 10455 3.648067 CTCTAATAGATGGGAGGCACCAA 59.352 47.826 2.69 0.00 45.13 3.67
8548 10456 3.242867 CTCTAATAGATGGGAGGCACCA 58.757 50.000 2.69 3.04 46.24 4.17
8549 10457 3.243724 ACTCTAATAGATGGGAGGCACC 58.756 50.000 0.00 0.00 38.08 5.01
8550 10458 4.101741 ACAACTCTAATAGATGGGAGGCAC 59.898 45.833 0.00 0.00 32.44 5.01
8551 10459 4.298626 ACAACTCTAATAGATGGGAGGCA 58.701 43.478 0.00 0.00 32.44 4.75
8552 10460 4.965200 ACAACTCTAATAGATGGGAGGC 57.035 45.455 0.00 0.00 32.44 4.70
8553 10461 6.239458 GGAGAACAACTCTAATAGATGGGAGG 60.239 46.154 0.00 0.00 44.37 4.30
8554 10462 6.553100 AGGAGAACAACTCTAATAGATGGGAG 59.447 42.308 0.00 0.00 44.37 4.30
8555 10463 6.444704 AGGAGAACAACTCTAATAGATGGGA 58.555 40.000 0.00 0.00 44.37 4.37
8556 10464 6.739331 AGGAGAACAACTCTAATAGATGGG 57.261 41.667 0.00 0.00 44.37 4.00
8557 10465 8.260818 TCAAAGGAGAACAACTCTAATAGATGG 58.739 37.037 0.00 0.00 44.37 3.51
8558 10466 9.092876 GTCAAAGGAGAACAACTCTAATAGATG 57.907 37.037 0.00 0.00 44.37 2.90
8559 10467 9.041354 AGTCAAAGGAGAACAACTCTAATAGAT 57.959 33.333 0.00 0.00 44.37 1.98
8560 10468 8.423906 AGTCAAAGGAGAACAACTCTAATAGA 57.576 34.615 0.00 0.00 44.37 1.98
8561 10469 7.762159 GGAGTCAAAGGAGAACAACTCTAATAG 59.238 40.741 0.00 0.00 44.37 1.73
8562 10470 7.310485 GGGAGTCAAAGGAGAACAACTCTAATA 60.310 40.741 0.00 0.00 44.37 0.98
8563 10471 6.468543 GGAGTCAAAGGAGAACAACTCTAAT 58.531 40.000 0.00 0.00 44.37 1.73
8564 10472 5.221661 GGGAGTCAAAGGAGAACAACTCTAA 60.222 44.000 0.00 0.00 44.37 2.10
8565 10473 4.283722 GGGAGTCAAAGGAGAACAACTCTA 59.716 45.833 0.00 0.00 44.37 2.43
8566 10474 3.071747 GGGAGTCAAAGGAGAACAACTCT 59.928 47.826 0.00 0.00 44.37 3.24
8567 10475 3.071747 AGGGAGTCAAAGGAGAACAACTC 59.928 47.826 0.00 0.00 44.24 3.01
8568 10476 3.049344 AGGGAGTCAAAGGAGAACAACT 58.951 45.455 0.00 0.00 0.00 3.16
8569 10477 3.403968 GAGGGAGTCAAAGGAGAACAAC 58.596 50.000 0.00 0.00 0.00 3.32
8570 10478 2.037251 CGAGGGAGTCAAAGGAGAACAA 59.963 50.000 0.00 0.00 0.00 2.83
8571 10479 1.618837 CGAGGGAGTCAAAGGAGAACA 59.381 52.381 0.00 0.00 0.00 3.18
8572 10480 1.619332 ACGAGGGAGTCAAAGGAGAAC 59.381 52.381 0.00 0.00 0.00 3.01
8573 10481 2.011122 ACGAGGGAGTCAAAGGAGAA 57.989 50.000 0.00 0.00 0.00 2.87
8574 10482 1.893801 GAACGAGGGAGTCAAAGGAGA 59.106 52.381 0.00 0.00 0.00 3.71
8575 10483 1.066787 GGAACGAGGGAGTCAAAGGAG 60.067 57.143 0.00 0.00 0.00 3.69
8576 10484 0.974383 GGAACGAGGGAGTCAAAGGA 59.026 55.000 0.00 0.00 0.00 3.36
8577 10485 0.977395 AGGAACGAGGGAGTCAAAGG 59.023 55.000 0.00 0.00 0.00 3.11
8578 10486 1.402984 CGAGGAACGAGGGAGTCAAAG 60.403 57.143 0.00 0.00 45.77 2.77
8579 10487 0.601558 CGAGGAACGAGGGAGTCAAA 59.398 55.000 0.00 0.00 45.77 2.69
8580 10488 1.248785 CCGAGGAACGAGGGAGTCAA 61.249 60.000 0.00 0.00 45.77 3.18
8581 10489 1.677966 CCGAGGAACGAGGGAGTCA 60.678 63.158 0.00 0.00 45.77 3.41
8582 10490 3.066233 GCCGAGGAACGAGGGAGTC 62.066 68.421 0.00 0.00 45.77 3.36
8583 10491 3.069318 GCCGAGGAACGAGGGAGT 61.069 66.667 0.00 0.00 45.77 3.85
8584 10492 3.839432 GGCCGAGGAACGAGGGAG 61.839 72.222 0.00 0.00 45.77 4.30
8585 10493 3.976490 ATGGCCGAGGAACGAGGGA 62.976 63.158 0.00 0.00 45.77 4.20
8586 10494 3.470888 ATGGCCGAGGAACGAGGG 61.471 66.667 0.00 0.00 45.77 4.30
8587 10495 2.202932 CATGGCCGAGGAACGAGG 60.203 66.667 0.00 0.00 45.77 4.63
8588 10496 2.892425 GCATGGCCGAGGAACGAG 60.892 66.667 0.00 0.00 45.77 4.18
8589 10497 2.923426 GATGCATGGCCGAGGAACGA 62.923 60.000 2.46 0.00 45.77 3.85
8590 10498 2.514592 ATGCATGGCCGAGGAACG 60.515 61.111 0.00 0.00 42.18 3.95
8591 10499 1.153086 AGATGCATGGCCGAGGAAC 60.153 57.895 2.46 0.00 0.00 3.62
8592 10500 1.146930 GAGATGCATGGCCGAGGAA 59.853 57.895 2.46 0.00 0.00 3.36
8593 10501 2.065789 TGAGATGCATGGCCGAGGA 61.066 57.895 2.46 0.00 0.00 3.71
8594 10502 1.890979 GTGAGATGCATGGCCGAGG 60.891 63.158 2.46 0.00 0.00 4.63
8595 10503 1.890979 GGTGAGATGCATGGCCGAG 60.891 63.158 2.46 0.00 0.00 4.63
8596 10504 2.190313 GGTGAGATGCATGGCCGA 59.810 61.111 2.46 0.00 0.00 5.54
8597 10505 2.184830 CAGGTGAGATGCATGGCCG 61.185 63.158 2.46 0.00 0.00 6.13
8598 10506 0.394762 TTCAGGTGAGATGCATGGCC 60.395 55.000 2.46 0.00 0.00 5.36
8599 10507 1.466856 TTTCAGGTGAGATGCATGGC 58.533 50.000 2.46 0.00 0.00 4.40
8600 10508 4.158949 TGATTTTTCAGGTGAGATGCATGG 59.841 41.667 2.46 0.00 0.00 3.66
8601 10509 5.319140 TGATTTTTCAGGTGAGATGCATG 57.681 39.130 2.46 0.00 0.00 4.06
8602 10510 5.479375 AGTTGATTTTTCAGGTGAGATGCAT 59.521 36.000 0.00 0.00 0.00 3.96
8603 10511 4.828939 AGTTGATTTTTCAGGTGAGATGCA 59.171 37.500 0.00 0.00 0.00 3.96
8604 10512 5.182760 AGAGTTGATTTTTCAGGTGAGATGC 59.817 40.000 0.00 0.00 0.00 3.91
8605 10513 6.128063 GGAGAGTTGATTTTTCAGGTGAGATG 60.128 42.308 0.00 0.00 0.00 2.90
8606 10514 5.942826 GGAGAGTTGATTTTTCAGGTGAGAT 59.057 40.000 0.00 0.00 0.00 2.75
8607 10515 5.308825 GGAGAGTTGATTTTTCAGGTGAGA 58.691 41.667 0.00 0.00 0.00 3.27
8608 10516 4.153117 CGGAGAGTTGATTTTTCAGGTGAG 59.847 45.833 0.00 0.00 0.00 3.51
8609 10517 4.065088 CGGAGAGTTGATTTTTCAGGTGA 58.935 43.478 0.00 0.00 0.00 4.02
8610 10518 3.365364 GCGGAGAGTTGATTTTTCAGGTG 60.365 47.826 0.00 0.00 0.00 4.00
8611 10519 2.814336 GCGGAGAGTTGATTTTTCAGGT 59.186 45.455 0.00 0.00 0.00 4.00
8612 10520 3.077359 AGCGGAGAGTTGATTTTTCAGG 58.923 45.455 0.00 0.00 0.00 3.86
8613 10521 3.748048 TGAGCGGAGAGTTGATTTTTCAG 59.252 43.478 0.00 0.00 0.00 3.02
8614 10522 3.498397 GTGAGCGGAGAGTTGATTTTTCA 59.502 43.478 0.00 0.00 0.00 2.69
8615 10523 3.423645 CGTGAGCGGAGAGTTGATTTTTC 60.424 47.826 0.00 0.00 0.00 2.29
8616 10524 2.480419 CGTGAGCGGAGAGTTGATTTTT 59.520 45.455 0.00 0.00 0.00 1.94
8617 10525 2.069273 CGTGAGCGGAGAGTTGATTTT 58.931 47.619 0.00 0.00 0.00 1.82
8618 10526 1.000955 ACGTGAGCGGAGAGTTGATTT 59.999 47.619 0.00 0.00 43.45 2.17
8619 10527 0.603569 ACGTGAGCGGAGAGTTGATT 59.396 50.000 0.00 0.00 43.45 2.57
8620 10528 0.171455 GACGTGAGCGGAGAGTTGAT 59.829 55.000 0.00 0.00 43.45 2.57
8621 10529 1.170290 TGACGTGAGCGGAGAGTTGA 61.170 55.000 0.00 0.00 43.45 3.18
8622 10530 0.109086 ATGACGTGAGCGGAGAGTTG 60.109 55.000 0.00 0.00 43.45 3.16
8623 10531 0.603569 AATGACGTGAGCGGAGAGTT 59.396 50.000 0.00 0.00 43.45 3.01
8624 10532 0.171455 GAATGACGTGAGCGGAGAGT 59.829 55.000 0.00 0.00 43.45 3.24
8625 10533 0.453793 AGAATGACGTGAGCGGAGAG 59.546 55.000 0.00 0.00 43.45 3.20
8626 10534 0.888619 AAGAATGACGTGAGCGGAGA 59.111 50.000 0.00 0.00 43.45 3.71
8627 10535 0.994995 CAAGAATGACGTGAGCGGAG 59.005 55.000 0.00 0.00 43.45 4.63
8628 10536 0.317160 ACAAGAATGACGTGAGCGGA 59.683 50.000 0.00 0.00 43.45 5.54
8629 10537 1.148310 AACAAGAATGACGTGAGCGG 58.852 50.000 0.00 0.00 43.45 5.52
8630 10538 4.492570 GGAATAACAAGAATGACGTGAGCG 60.493 45.833 0.00 0.00 44.93 5.03
8631 10539 4.391830 TGGAATAACAAGAATGACGTGAGC 59.608 41.667 0.00 0.00 0.00 4.26
8632 10540 6.536582 AGATGGAATAACAAGAATGACGTGAG 59.463 38.462 0.00 0.00 0.00 3.51
8633 10541 6.406370 AGATGGAATAACAAGAATGACGTGA 58.594 36.000 0.00 0.00 0.00 4.35
8634 10542 6.668541 AGATGGAATAACAAGAATGACGTG 57.331 37.500 0.00 0.00 0.00 4.49
8635 10543 7.495934 CCTAAGATGGAATAACAAGAATGACGT 59.504 37.037 0.00 0.00 0.00 4.34
8636 10544 7.495934 ACCTAAGATGGAATAACAAGAATGACG 59.504 37.037 0.00 0.00 0.00 4.35
8637 10545 8.738645 ACCTAAGATGGAATAACAAGAATGAC 57.261 34.615 0.00 0.00 0.00 3.06
8638 10546 9.832445 GTACCTAAGATGGAATAACAAGAATGA 57.168 33.333 0.00 0.00 0.00 2.57
8639 10547 9.057089 GGTACCTAAGATGGAATAACAAGAATG 57.943 37.037 4.06 0.00 0.00 2.67
8640 10548 9.004231 AGGTACCTAAGATGGAATAACAAGAAT 57.996 33.333 14.41 0.00 0.00 2.40
8641 10549 8.388656 AGGTACCTAAGATGGAATAACAAGAA 57.611 34.615 14.41 0.00 0.00 2.52
8642 10550 7.989947 AGGTACCTAAGATGGAATAACAAGA 57.010 36.000 14.41 0.00 0.00 3.02
8643 10551 8.265055 TGAAGGTACCTAAGATGGAATAACAAG 58.735 37.037 16.67 0.00 0.00 3.16
8644 10552 8.153221 TGAAGGTACCTAAGATGGAATAACAA 57.847 34.615 16.67 0.00 0.00 2.83
8645 10553 7.402071 ACTGAAGGTACCTAAGATGGAATAACA 59.598 37.037 24.56 6.85 0.00 2.41
8646 10554 7.711339 CACTGAAGGTACCTAAGATGGAATAAC 59.289 40.741 24.56 3.50 0.00 1.89
8647 10555 7.622081 TCACTGAAGGTACCTAAGATGGAATAA 59.378 37.037 24.56 0.00 0.00 1.40
8648 10556 7.130099 TCACTGAAGGTACCTAAGATGGAATA 58.870 38.462 24.56 6.76 0.00 1.75
8649 10557 5.964477 TCACTGAAGGTACCTAAGATGGAAT 59.036 40.000 24.56 4.30 0.00 3.01
8650 10558 5.338632 TCACTGAAGGTACCTAAGATGGAA 58.661 41.667 24.56 3.33 0.00 3.53
8651 10559 4.942944 TCACTGAAGGTACCTAAGATGGA 58.057 43.478 24.56 17.01 0.00 3.41
8652 10560 4.100189 CCTCACTGAAGGTACCTAAGATGG 59.900 50.000 24.56 18.73 0.00 3.51
8653 10561 4.100189 CCCTCACTGAAGGTACCTAAGATG 59.900 50.000 24.56 18.85 34.34 2.90
8654 10562 4.264895 ACCCTCACTGAAGGTACCTAAGAT 60.265 45.833 24.56 7.48 34.34 2.40
8655 10563 3.077088 ACCCTCACTGAAGGTACCTAAGA 59.923 47.826 24.56 13.80 34.34 2.10
8656 10564 3.442076 ACCCTCACTGAAGGTACCTAAG 58.558 50.000 16.67 17.93 34.34 2.18
8669 10577 5.104900 GGTTGATGTACTATGAACCCTCACT 60.105 44.000 12.38 0.00 33.30 3.41
8698 10606 1.341531 ACACGCCATATAGGTCAGAGC 59.658 52.381 0.00 0.00 40.61 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.