Multiple sequence alignment - TraesCS5D01G127800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G127800 chr5D 100.000 5072 0 0 1 5072 198950616 198955687 0.000000e+00 9367.0
1 TraesCS5D01G127800 chr5D 100.000 2952 0 0 5381 8332 198955996 198958947 0.000000e+00 5452.0
2 TraesCS5D01G127800 chr5D 95.152 165 8 0 4289 4453 27354250 27354414 2.310000e-65 261.0
3 TraesCS5D01G127800 chr5D 100.000 28 0 0 4511 4538 41364731 41364704 1.500000e-02 52.8
4 TraesCS5D01G127800 chr5B 97.409 3590 67 6 723 4293 209651829 209648247 0.000000e+00 6091.0
5 TraesCS5D01G127800 chr5B 97.180 1915 26 6 6244 8132 209646218 209644306 0.000000e+00 3212.0
6 TraesCS5D01G127800 chr5B 95.122 902 24 5 5381 6263 209647285 209646385 0.000000e+00 1404.0
7 TraesCS5D01G127800 chr5B 97.246 472 9 4 4459 4929 209648241 209647773 0.000000e+00 797.0
8 TraesCS5D01G127800 chr5B 95.642 436 19 0 2 437 209654089 209653654 0.000000e+00 701.0
9 TraesCS5D01G127800 chr5B 89.231 260 25 2 433 692 209652084 209651828 1.040000e-83 322.0
10 TraesCS5D01G127800 chr5B 97.744 133 3 0 8004 8136 209644302 209644170 6.500000e-56 230.0
11 TraesCS5D01G127800 chr5B 94.309 123 4 1 1 123 209654211 209654092 1.430000e-42 185.0
12 TraesCS5D01G127800 chr5A 97.580 3058 58 9 681 3722 227706725 227709782 0.000000e+00 5223.0
13 TraesCS5D01G127800 chr5A 96.165 1356 38 8 5435 6782 227711340 227712689 0.000000e+00 2204.0
14 TraesCS5D01G127800 chr5A 93.551 1070 31 12 6836 7878 227712987 227714045 0.000000e+00 1559.0
15 TraesCS5D01G127800 chr5A 96.718 579 19 0 3715 4293 227709968 227710546 0.000000e+00 965.0
16 TraesCS5D01G127800 chr5A 94.212 622 24 8 4450 5066 227710543 227711157 0.000000e+00 939.0
17 TraesCS5D01G127800 chr5A 90.526 570 53 1 3 572 227027103 227027671 0.000000e+00 752.0
18 TraesCS5D01G127800 chr5A 93.939 132 6 2 7836 7965 227714046 227714177 1.830000e-46 198.0
19 TraesCS5D01G127800 chr5A 92.481 133 6 4 577 706 227089324 227089455 3.970000e-43 187.0
20 TraesCS5D01G127800 chr5A 92.105 114 7 2 593 704 227706601 227706714 8.660000e-35 159.0
21 TraesCS5D01G127800 chr5A 89.583 48 4 1 7587 7633 439553882 439553929 9.030000e-05 60.2
22 TraesCS5D01G127800 chr1A 96.988 166 4 1 4289 4453 84012551 84012386 2.290000e-70 278.0
23 TraesCS5D01G127800 chr1A 95.092 163 8 0 4292 4454 39652537 39652375 2.980000e-64 257.0
24 TraesCS5D01G127800 chr4B 95.732 164 7 0 4291 4454 507365471 507365634 1.780000e-66 265.0
25 TraesCS5D01G127800 chr4B 90.000 50 4 1 4570 4619 96176978 96177026 6.980000e-06 63.9
26 TraesCS5D01G127800 chr4A 95.732 164 7 0 4291 4454 80142936 80142773 1.780000e-66 265.0
27 TraesCS5D01G127800 chr2B 96.273 161 6 0 4291 4451 115381524 115381684 1.780000e-66 265.0
28 TraesCS5D01G127800 chr2B 73.551 276 45 17 4818 5068 755151275 755151547 6.930000e-11 80.5
29 TraesCS5D01G127800 chr2B 93.750 48 3 0 5025 5072 628947430 628947383 1.160000e-08 73.1
30 TraesCS5D01G127800 chr1B 97.436 156 2 2 4289 4443 141294104 141293950 1.780000e-66 265.0
31 TraesCS5D01G127800 chr1B 95.122 164 7 1 4291 4453 615124151 615123988 2.980000e-64 257.0
32 TraesCS5D01G127800 chr1B 90.286 175 16 1 8157 8331 640429894 640429721 2.340000e-55 228.0
33 TraesCS5D01G127800 chr1B 85.345 116 13 2 4690 4801 419206080 419206195 5.280000e-22 117.0
34 TraesCS5D01G127800 chr1B 97.436 39 0 1 7588 7625 252475891 252475929 1.940000e-06 65.8
35 TraesCS5D01G127800 chr1B 91.111 45 2 2 7593 7637 9265638 9265680 9.030000e-05 60.2
36 TraesCS5D01G127800 chr1B 90.698 43 4 0 7587 7629 645484136 645484094 3.250000e-04 58.4
37 TraesCS5D01G127800 chr3A 95.679 162 7 0 4292 4453 387295453 387295292 2.310000e-65 261.0
38 TraesCS5D01G127800 chr3A 77.848 316 56 10 4690 4994 28450234 28450546 5.140000e-42 183.0
39 TraesCS5D01G127800 chr4D 79.449 399 52 15 4685 5060 297109548 297109939 1.070000e-63 255.0
40 TraesCS5D01G127800 chr3B 90.805 174 13 3 8158 8329 55093854 55093682 6.500000e-56 230.0
41 TraesCS5D01G127800 chr3B 82.143 84 10 3 4875 4953 566788853 566788770 5.400000e-07 67.6
42 TraesCS5D01G127800 chrUn 79.573 328 55 7 4689 5009 69889135 69888813 3.030000e-54 224.0
43 TraesCS5D01G127800 chr6D 76.503 366 60 15 4685 5033 462482295 462482651 8.600000e-40 176.0
44 TraesCS5D01G127800 chr7D 81.481 189 30 5 4832 5018 538911234 538911049 5.210000e-32 150.0
45 TraesCS5D01G127800 chr7D 81.250 112 20 1 4577 4688 198023699 198023809 1.150000e-13 89.8
46 TraesCS5D01G127800 chr7D 90.566 53 4 1 7578 7629 26500255 26500307 1.500000e-07 69.4
47 TraesCS5D01G127800 chr6A 75.000 308 54 13 4685 4972 587547421 587547725 4.080000e-23 121.0
48 TraesCS5D01G127800 chr1D 80.864 162 20 8 4812 4967 42626545 42626701 5.280000e-22 117.0
49 TraesCS5D01G127800 chr6B 92.857 42 3 0 7588 7629 87080390 87080431 2.510000e-05 62.1
50 TraesCS5D01G127800 chr7A 94.872 39 1 1 7591 7628 134420294 134420256 9.030000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G127800 chr5D 198950616 198958947 8331 False 7409.500000 9367 100.000000 1 8332 2 chr5D.!!$F2 8331
1 TraesCS5D01G127800 chr5B 209644170 209654211 10041 True 1617.750000 6091 95.485375 1 8136 8 chr5B.!!$R1 8135
2 TraesCS5D01G127800 chr5A 227706601 227714177 7576 False 1606.714286 5223 94.895714 593 7965 7 chr5A.!!$F4 7372
3 TraesCS5D01G127800 chr5A 227027103 227027671 568 False 752.000000 752 90.526000 3 572 1 chr5A.!!$F1 569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
550 2246 0.179145 AGCTCCGTACATGCACGTAC 60.179 55.000 16.86 12.94 40.31 3.67 F
716 2484 0.319555 TAACAGAGACGTGCACTGCC 60.320 55.000 16.19 3.57 38.58 4.85 F
2116 3903 0.255890 TGGAGGTTATGAGCCAAGCC 59.744 55.000 0.00 0.00 0.00 4.35 F
3014 4801 1.452108 GGTTAGCTCATGGGCGCTT 60.452 57.895 12.97 0.00 37.68 4.68 F
4457 6444 1.006758 AGGAACGGAGGGAGTATGACA 59.993 52.381 0.00 0.00 0.00 3.58 F
5444 7555 0.933097 CAGTCTGGACGTATGCATGC 59.067 55.000 11.82 11.82 36.20 4.06 F
5464 7575 0.036388 GATGTGAGGGTCCGCTTTGA 60.036 55.000 0.00 0.00 0.00 2.69 F
5513 7626 1.846007 AGGTTGAACCAACAGTTGCA 58.154 45.000 17.83 0.00 45.11 4.08 F
6596 8916 2.733956 TCACAAACAAGGCAAAGGTCT 58.266 42.857 0.00 0.00 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1728 3515 1.065551 GCCAATGAAATCGTAGGTGGC 59.934 52.381 0.00 0.0 42.88 5.01 R
2557 4344 0.945813 GGAGAGCGTGAGTAGCGTAT 59.054 55.000 0.00 0.0 40.04 3.06 R
3689 5476 0.849094 TGAGGGTGGGGCATAACCTT 60.849 55.000 0.00 0.0 39.10 3.50 R
4615 6603 0.038744 AGAGACGGACGTTTAGGGGA 59.961 55.000 0.00 0.0 0.00 4.81 R
5448 7559 0.034896 TCTTCAAAGCGGACCCTCAC 59.965 55.000 0.00 0.0 0.00 3.51 R
6703 9023 1.214305 TGGCCCAGGCTGGATACTTT 61.214 55.000 34.84 0.0 40.96 2.66 R
6803 9126 4.528596 TCAGACTACAGAAAGAAAGGGAGG 59.471 45.833 0.00 0.0 0.00 4.30 R
6804 9127 5.474825 GTCAGACTACAGAAAGAAAGGGAG 58.525 45.833 0.00 0.0 0.00 4.30 R
8201 10972 0.035739 GTTTCCACGTCCAAGCCCTA 59.964 55.000 0.00 0.0 0.00 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 232 1.050988 AGTCGATGCACTAGGCCCAT 61.051 55.000 0.00 0.00 43.89 4.00
135 257 6.876789 TCAAATGTGATTGGTATTAGACGTGT 59.123 34.615 0.00 0.00 0.00 4.49
175 297 2.289547 CGCAAATATCACTAAACCCCCG 59.710 50.000 0.00 0.00 0.00 5.73
184 306 3.009695 TCACTAAACCCCCGATTTCACAT 59.990 43.478 0.00 0.00 0.00 3.21
191 313 2.164219 CCCCCGATTTCACATGACAAAG 59.836 50.000 0.00 0.00 0.00 2.77
230 352 3.243724 CCCCAATTTCACCTTAAACCCA 58.756 45.455 0.00 0.00 0.00 4.51
234 356 4.346709 CCAATTTCACCTTAAACCCAACCT 59.653 41.667 0.00 0.00 0.00 3.50
354 476 1.179174 GGTGAAGCTCCAACCAACCC 61.179 60.000 7.39 0.00 0.00 4.11
459 2155 0.533085 GCGCTGAACCCCTAGAATCC 60.533 60.000 0.00 0.00 0.00 3.01
485 2181 1.767759 ATTCACAGCATAAGGGCCAC 58.232 50.000 6.18 0.00 0.00 5.01
489 2185 1.078497 CAGCATAAGGGCCACGTGA 60.078 57.895 19.30 0.00 0.00 4.35
511 2207 1.227556 GTCAACGCCACAGTGGACT 60.228 57.895 24.96 3.48 40.96 3.85
543 2239 2.315925 ACCAATCAGCTCCGTACATG 57.684 50.000 0.00 0.00 0.00 3.21
547 2243 0.528466 ATCAGCTCCGTACATGCACG 60.528 55.000 11.63 11.63 41.59 5.34
550 2246 0.179145 AGCTCCGTACATGCACGTAC 60.179 55.000 16.86 12.94 40.31 3.67
551 2247 0.457166 GCTCCGTACATGCACGTACA 60.457 55.000 21.63 3.61 41.55 2.90
558 2254 2.526304 ACATGCACGTACAAGTGACT 57.474 45.000 5.22 0.00 44.43 3.41
576 2272 8.409371 CAAGTGACTGTATCTGAGCTATTAAGA 58.591 37.037 0.00 0.00 0.00 2.10
647 2343 1.309950 TTCCGCGACAAATTTGGTGA 58.690 45.000 21.74 7.94 0.00 4.02
704 2472 9.999009 TTAACAGATACGTAACAGATAACAGAG 57.001 33.333 0.00 0.00 0.00 3.35
705 2473 7.860918 ACAGATACGTAACAGATAACAGAGA 57.139 36.000 0.00 0.00 0.00 3.10
706 2474 7.695820 ACAGATACGTAACAGATAACAGAGAC 58.304 38.462 0.00 0.00 0.00 3.36
707 2475 6.846786 CAGATACGTAACAGATAACAGAGACG 59.153 42.308 0.00 0.00 35.30 4.18
708 2476 6.538021 AGATACGTAACAGATAACAGAGACGT 59.462 38.462 0.00 0.00 43.85 4.34
709 2477 4.720090 ACGTAACAGATAACAGAGACGTG 58.280 43.478 0.00 0.00 40.45 4.49
710 2478 3.542704 CGTAACAGATAACAGAGACGTGC 59.457 47.826 0.00 0.00 0.00 5.34
711 2479 3.660501 AACAGATAACAGAGACGTGCA 57.339 42.857 0.00 0.00 0.00 4.57
712 2480 2.947852 ACAGATAACAGAGACGTGCAC 58.052 47.619 6.82 6.82 0.00 4.57
713 2481 2.558795 ACAGATAACAGAGACGTGCACT 59.441 45.455 16.19 1.46 0.00 4.40
714 2482 2.919859 CAGATAACAGAGACGTGCACTG 59.080 50.000 16.19 11.05 40.53 3.66
715 2483 1.656095 GATAACAGAGACGTGCACTGC 59.344 52.381 16.19 6.49 38.58 4.40
716 2484 0.319555 TAACAGAGACGTGCACTGCC 60.320 55.000 16.19 3.57 38.58 4.85
717 2485 2.032860 AACAGAGACGTGCACTGCCT 62.033 55.000 16.19 8.69 38.58 4.75
718 2486 1.179174 ACAGAGACGTGCACTGCCTA 61.179 55.000 16.19 0.00 38.58 3.93
719 2487 0.734253 CAGAGACGTGCACTGCCTAC 60.734 60.000 16.19 1.65 0.00 3.18
720 2488 0.896019 AGAGACGTGCACTGCCTACT 60.896 55.000 16.19 4.80 0.00 2.57
721 2489 0.809385 GAGACGTGCACTGCCTACTA 59.191 55.000 16.19 0.00 0.00 1.82
867 2635 2.167219 CCGCGTACTCCGTCGTCTA 61.167 63.158 4.92 0.00 39.32 2.59
1322 3109 2.126228 GGATGACGACGGCGAACA 60.126 61.111 22.49 18.30 41.64 3.18
1545 3332 0.387202 CGGACTACATGCTCCCAGAG 59.613 60.000 0.00 0.00 0.00 3.35
1648 3435 3.073356 GGATGGGTTTTATGGGGACGATA 59.927 47.826 0.00 0.00 0.00 2.92
1737 3524 4.514577 CTGCCTCCGCCACCTACG 62.515 72.222 0.00 0.00 0.00 3.51
1865 3652 2.671070 CCGGTTGCCTCAGGATGT 59.329 61.111 0.00 0.00 37.40 3.06
2116 3903 0.255890 TGGAGGTTATGAGCCAAGCC 59.744 55.000 0.00 0.00 0.00 4.35
2531 4318 8.727100 AATTATCATAGAGATACACCCACAGA 57.273 34.615 0.00 0.00 38.90 3.41
2557 4344 2.658285 CCAAGCCAAGGAATGCTCATA 58.342 47.619 0.00 0.00 36.66 2.15
3014 4801 1.452108 GGTTAGCTCATGGGCGCTT 60.452 57.895 12.97 0.00 37.68 4.68
3773 5759 3.726557 AGGATTGAATGGAGTTCAGCA 57.273 42.857 0.00 0.00 46.85 4.41
3803 5789 5.531634 ACTATGCCAAAACATTGTCAGTTG 58.468 37.500 0.00 0.00 31.68 3.16
3843 5830 2.679450 CAATGCACCACAACATCTTGG 58.321 47.619 0.00 0.00 39.00 3.61
3857 5844 5.957771 ACATCTTGGCTCTGTTTATAGGA 57.042 39.130 0.00 0.00 0.00 2.94
3961 5948 4.951715 TGCAAAGGATGATGATGTAGCTTT 59.048 37.500 0.00 0.00 0.00 3.51
4054 6041 2.569059 TCCTGATGCATTTGAGCTAGC 58.431 47.619 6.62 6.62 34.99 3.42
4293 6280 3.304726 GGCTGGCTGAGTTTTTGAAGTAC 60.305 47.826 0.00 0.00 0.00 2.73
4294 6281 3.565902 GCTGGCTGAGTTTTTGAAGTACT 59.434 43.478 0.00 0.00 0.00 2.73
4295 6282 4.319839 GCTGGCTGAGTTTTTGAAGTACTC 60.320 45.833 0.00 0.00 38.96 2.59
4297 6284 3.502595 GGCTGAGTTTTTGAAGTACTCCC 59.497 47.826 0.00 0.00 37.97 4.30
4298 6285 4.390264 GCTGAGTTTTTGAAGTACTCCCT 58.610 43.478 0.00 0.00 37.97 4.20
4299 6286 4.452795 GCTGAGTTTTTGAAGTACTCCCTC 59.547 45.833 0.00 0.00 37.97 4.30
4300 6287 4.969484 TGAGTTTTTGAAGTACTCCCTCC 58.031 43.478 0.00 0.00 37.97 4.30
4301 6288 3.995048 GAGTTTTTGAAGTACTCCCTCCG 59.005 47.826 0.00 0.00 33.77 4.63
4302 6289 3.390311 AGTTTTTGAAGTACTCCCTCCGT 59.610 43.478 0.00 0.00 0.00 4.69
4303 6290 4.132336 GTTTTTGAAGTACTCCCTCCGTT 58.868 43.478 0.00 0.00 0.00 4.44
4304 6291 3.672767 TTTGAAGTACTCCCTCCGTTC 57.327 47.619 0.00 0.00 0.00 3.95
4305 6292 1.553706 TGAAGTACTCCCTCCGTTCC 58.446 55.000 0.00 0.00 0.00 3.62
4307 6294 2.309755 TGAAGTACTCCCTCCGTTCCTA 59.690 50.000 0.00 0.00 0.00 2.94
4308 6295 3.245371 TGAAGTACTCCCTCCGTTCCTAA 60.245 47.826 0.00 0.00 0.00 2.69
4309 6296 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
4310 6297 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
4311 6298 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
4312 6299 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
4313 6300 6.856757 AGTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
4314 6301 7.300658 AGTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
4315 6302 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
4316 6303 6.379579 ACTCCCTCCGTTCCTAAATATAAGA 58.620 40.000 0.00 0.00 0.00 2.10
4317 6304 6.267242 ACTCCCTCCGTTCCTAAATATAAGAC 59.733 42.308 0.00 0.00 0.00 3.01
4318 6305 5.541484 TCCCTCCGTTCCTAAATATAAGACC 59.459 44.000 0.00 0.00 0.00 3.85
4319 6306 5.543020 CCCTCCGTTCCTAAATATAAGACCT 59.457 44.000 0.00 0.00 0.00 3.85
4320 6307 6.042897 CCCTCCGTTCCTAAATATAAGACCTT 59.957 42.308 0.00 0.00 0.00 3.50
4321 6308 7.419865 CCCTCCGTTCCTAAATATAAGACCTTT 60.420 40.741 0.00 0.00 0.00 3.11
4322 6309 7.991460 CCTCCGTTCCTAAATATAAGACCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
4340 6327 8.425703 AGACCTTTTAGAGATTTCACTATAGGC 58.574 37.037 4.43 0.00 31.13 3.93
4341 6328 8.325477 ACCTTTTAGAGATTTCACTATAGGCT 57.675 34.615 4.43 0.00 31.13 4.58
4342 6329 9.435570 ACCTTTTAGAGATTTCACTATAGGCTA 57.564 33.333 4.43 0.00 31.13 3.93
4343 6330 9.699703 CCTTTTAGAGATTTCACTATAGGCTAC 57.300 37.037 4.43 0.00 0.00 3.58
4348 6335 8.941995 AGAGATTTCACTATAGGCTACATACA 57.058 34.615 4.43 0.00 0.00 2.29
4349 6336 9.019656 AGAGATTTCACTATAGGCTACATACAG 57.980 37.037 4.43 0.00 0.00 2.74
4350 6337 8.941995 AGATTTCACTATAGGCTACATACAGA 57.058 34.615 4.43 0.00 0.00 3.41
4351 6338 9.019656 AGATTTCACTATAGGCTACATACAGAG 57.980 37.037 4.43 0.00 0.00 3.35
4352 6339 6.576662 TTCACTATAGGCTACATACAGAGC 57.423 41.667 4.43 0.00 38.00 4.09
4353 6340 5.631119 TCACTATAGGCTACATACAGAGCA 58.369 41.667 4.43 0.00 40.64 4.26
4354 6341 6.068670 TCACTATAGGCTACATACAGAGCAA 58.931 40.000 4.43 0.00 40.64 3.91
4355 6342 6.549736 TCACTATAGGCTACATACAGAGCAAA 59.450 38.462 4.43 0.00 40.64 3.68
4356 6343 7.069455 TCACTATAGGCTACATACAGAGCAAAA 59.931 37.037 4.43 0.00 40.64 2.44
4357 6344 7.875041 CACTATAGGCTACATACAGAGCAAAAT 59.125 37.037 4.43 0.00 40.64 1.82
4358 6345 7.875041 ACTATAGGCTACATACAGAGCAAAATG 59.125 37.037 4.43 0.00 40.64 2.32
4359 6346 5.102953 AGGCTACATACAGAGCAAAATGA 57.897 39.130 0.00 0.00 40.64 2.57
4360 6347 5.121811 AGGCTACATACAGAGCAAAATGAG 58.878 41.667 0.00 0.00 40.64 2.90
4361 6348 4.878397 GGCTACATACAGAGCAAAATGAGT 59.122 41.667 0.00 0.00 40.64 3.41
4362 6349 5.220739 GGCTACATACAGAGCAAAATGAGTG 60.221 44.000 0.00 0.00 40.64 3.51
4363 6350 5.582269 GCTACATACAGAGCAAAATGAGTGA 59.418 40.000 0.00 0.00 38.62 3.41
4364 6351 6.092670 GCTACATACAGAGCAAAATGAGTGAA 59.907 38.462 0.00 0.00 38.62 3.18
4365 6352 7.201679 GCTACATACAGAGCAAAATGAGTGAAT 60.202 37.037 0.00 0.00 38.62 2.57
4366 6353 7.081526 ACATACAGAGCAAAATGAGTGAATC 57.918 36.000 0.00 0.00 0.00 2.52
4367 6354 6.883217 ACATACAGAGCAAAATGAGTGAATCT 59.117 34.615 0.00 0.00 0.00 2.40
4368 6355 8.043113 ACATACAGAGCAAAATGAGTGAATCTA 58.957 33.333 0.00 0.00 0.00 1.98
4369 6356 6.734104 ACAGAGCAAAATGAGTGAATCTAC 57.266 37.500 0.00 0.00 0.00 2.59
4370 6357 6.233434 ACAGAGCAAAATGAGTGAATCTACA 58.767 36.000 0.00 0.00 0.00 2.74
4371 6358 6.148480 ACAGAGCAAAATGAGTGAATCTACAC 59.852 38.462 0.00 0.00 40.60 2.90
4385 6372 9.469097 AGTGAATCTACACTCTAAAGTATGTCT 57.531 33.333 0.00 0.00 46.36 3.41
4412 6399 5.707242 ACATCCGTATGTAGTCCATAGTG 57.293 43.478 0.00 0.00 44.66 2.74
4413 6400 4.523173 ACATCCGTATGTAGTCCATAGTGG 59.477 45.833 0.00 0.00 44.66 4.00
4414 6401 4.442401 TCCGTATGTAGTCCATAGTGGA 57.558 45.455 0.00 0.00 45.98 4.02
4415 6402 7.143487 ACATCCGTATGTAGTCCATAGTGGAA 61.143 42.308 0.00 0.00 45.76 3.53
4416 6403 8.401784 ACATCCGTATGTAGTCCATAGTGGAAT 61.402 40.741 4.27 4.27 45.76 3.01
4428 6415 7.125792 TCCATAGTGGAATCTCTAAAAGGTC 57.874 40.000 0.00 0.00 45.00 3.85
4429 6416 6.903534 TCCATAGTGGAATCTCTAAAAGGTCT 59.096 38.462 0.00 0.00 45.00 3.85
4430 6417 7.403231 TCCATAGTGGAATCTCTAAAAGGTCTT 59.597 37.037 0.00 0.00 45.00 3.01
4431 6418 8.705594 CCATAGTGGAATCTCTAAAAGGTCTTA 58.294 37.037 0.00 0.00 40.96 2.10
4446 6433 8.959705 AAAAGGTCTTATATTTAGGAACGGAG 57.040 34.615 0.00 0.00 0.00 4.63
4447 6434 6.667558 AGGTCTTATATTTAGGAACGGAGG 57.332 41.667 0.00 0.00 0.00 4.30
4448 6435 5.543020 AGGTCTTATATTTAGGAACGGAGGG 59.457 44.000 0.00 0.00 0.00 4.30
4449 6436 5.541484 GGTCTTATATTTAGGAACGGAGGGA 59.459 44.000 0.00 0.00 0.00 4.20
4450 6437 6.295180 GGTCTTATATTTAGGAACGGAGGGAG 60.295 46.154 0.00 0.00 0.00 4.30
4451 6438 6.267242 GTCTTATATTTAGGAACGGAGGGAGT 59.733 42.308 0.00 0.00 0.00 3.85
4452 6439 7.449704 GTCTTATATTTAGGAACGGAGGGAGTA 59.550 40.741 0.00 0.00 0.00 2.59
4453 6440 8.175431 TCTTATATTTAGGAACGGAGGGAGTAT 58.825 37.037 0.00 0.00 0.00 2.12
4454 6441 4.957684 ATTTAGGAACGGAGGGAGTATG 57.042 45.455 0.00 0.00 0.00 2.39
4455 6442 3.675348 TTAGGAACGGAGGGAGTATGA 57.325 47.619 0.00 0.00 0.00 2.15
4456 6443 1.777941 AGGAACGGAGGGAGTATGAC 58.222 55.000 0.00 0.00 0.00 3.06
4457 6444 1.006758 AGGAACGGAGGGAGTATGACA 59.993 52.381 0.00 0.00 0.00 3.58
4615 6603 4.047125 CCGGCCATCCAACCCTGT 62.047 66.667 2.24 0.00 0.00 4.00
4731 6719 4.539726 TGATCCATCCCTTGAAATTGAGG 58.460 43.478 0.00 0.00 0.00 3.86
4839 6827 1.279271 AGTGCTTGTCCATGTACTCCC 59.721 52.381 0.00 0.00 28.23 4.30
4908 6897 2.482864 CATTTCACCAAACACTTGCCC 58.517 47.619 0.00 0.00 0.00 5.36
4939 6928 4.540735 CGTGGGGCGGATGGTACC 62.541 72.222 4.43 4.43 36.85 3.34
5408 7519 1.586154 GGACGGTGTTGGATGGCAAG 61.586 60.000 0.00 0.00 0.00 4.01
5411 7522 1.588082 GGTGTTGGATGGCAAGCTG 59.412 57.895 0.00 0.00 0.00 4.24
5430 7541 1.832608 TGTCCGGACAGCACAGTCT 60.833 57.895 33.23 0.00 38.57 3.24
5444 7555 0.933097 CAGTCTGGACGTATGCATGC 59.067 55.000 11.82 11.82 36.20 4.06
5448 7559 0.509929 CTGGACGTATGCATGCGATG 59.490 55.000 37.97 21.47 39.23 3.84
5464 7575 0.036388 GATGTGAGGGTCCGCTTTGA 60.036 55.000 0.00 0.00 0.00 2.69
5513 7626 1.846007 AGGTTGAACCAACAGTTGCA 58.154 45.000 17.83 0.00 45.11 4.08
5551 7664 6.699575 AATAAGATATGCGGGGAATATTGC 57.300 37.500 0.00 0.00 0.00 3.56
5620 7740 7.361286 GGTGAGTAAGTTTGGCTTGAATTCTAG 60.361 40.741 11.96 11.96 38.05 2.43
5731 7860 9.013229 AGCAACTCACTTTGACATTATTGAATA 57.987 29.630 0.00 0.00 0.00 1.75
6596 8916 2.733956 TCACAAACAAGGCAAAGGTCT 58.266 42.857 0.00 0.00 0.00 3.85
6703 9023 6.407525 CCACTTGTTATTTCTTTTGTTCCCCA 60.408 38.462 0.00 0.00 0.00 4.96
7335 9902 1.149148 GAACTTGGACTCGTGAAGCC 58.851 55.000 0.00 0.00 0.00 4.35
7475 10042 4.563061 ACGGTAGTGTATTGAACCTTCAC 58.437 43.478 0.00 0.00 36.83 3.18
7553 10120 7.510675 TTGATTCCTCTTACCTTCCAGTTAT 57.489 36.000 0.00 0.00 0.00 1.89
7590 10157 9.515020 CATTTATTTGTCATACAATGTGGTACC 57.485 33.333 4.43 4.43 38.00 3.34
7596 10163 2.653543 TACAATGTGGTACCCCCTCT 57.346 50.000 10.07 0.00 0.00 3.69
7608 10175 4.102210 GGTACCCCCTCTGTTCCTAAATAC 59.898 50.000 0.00 0.00 0.00 1.89
7709 10301 4.158764 AGAAACGGAAGGAGTAGATGTCTG 59.841 45.833 0.00 0.00 0.00 3.51
7753 10345 3.742369 GGCCATGTTTGAATCAACTTGTG 59.258 43.478 0.00 0.00 0.00 3.33
7883 10521 1.002033 GGTGCGTACGTATAGACCCAG 60.002 57.143 17.90 0.00 0.00 4.45
8094 10865 3.053455 CGGATAGGATTCGAAGCTTGAC 58.947 50.000 13.83 4.51 0.00 3.18
8101 10872 1.779569 TTCGAAGCTTGACGGTCTTC 58.220 50.000 2.10 3.96 34.45 2.87
8146 10917 5.868177 CGTTGCCGTATTAACAAACAAAA 57.132 34.783 0.00 0.00 0.00 2.44
8147 10918 5.885194 CGTTGCCGTATTAACAAACAAAAG 58.115 37.500 0.00 0.00 0.00 2.27
8148 10919 5.456173 CGTTGCCGTATTAACAAACAAAAGT 59.544 36.000 0.00 0.00 0.00 2.66
8149 10920 6.558795 CGTTGCCGTATTAACAAACAAAAGTG 60.559 38.462 0.00 0.00 0.00 3.16
8150 10921 5.282510 TGCCGTATTAACAAACAAAAGTGG 58.717 37.500 0.00 0.00 0.00 4.00
8151 10922 4.149221 GCCGTATTAACAAACAAAAGTGGC 59.851 41.667 0.00 0.00 0.00 5.01
8152 10923 5.282510 CCGTATTAACAAACAAAAGTGGCA 58.717 37.500 0.00 0.00 0.00 4.92
8153 10924 5.749109 CCGTATTAACAAACAAAAGTGGCAA 59.251 36.000 0.00 0.00 0.00 4.52
8154 10925 6.255887 CCGTATTAACAAACAAAAGTGGCAAA 59.744 34.615 0.00 0.00 0.00 3.68
8155 10926 7.114289 CGTATTAACAAACAAAAGTGGCAAAC 58.886 34.615 0.00 0.00 0.00 2.93
8156 10927 5.517037 TTAACAAACAAAAGTGGCAAACG 57.483 34.783 0.00 0.00 0.00 3.60
8157 10928 3.033368 ACAAACAAAAGTGGCAAACGT 57.967 38.095 0.00 0.00 0.00 3.99
8158 10929 3.394719 ACAAACAAAAGTGGCAAACGTT 58.605 36.364 0.00 0.00 31.20 3.99
8159 10930 3.810386 ACAAACAAAAGTGGCAAACGTTT 59.190 34.783 7.96 7.96 40.53 3.60
8160 10931 4.273724 ACAAACAAAAGTGGCAAACGTTTT 59.726 33.333 11.66 0.00 38.24 2.43
8161 10932 5.208503 CAAACAAAAGTGGCAAACGTTTTT 58.791 33.333 11.66 0.00 38.24 1.94
8162 10933 4.655440 ACAAAAGTGGCAAACGTTTTTC 57.345 36.364 11.66 7.09 38.24 2.29
8163 10934 3.433957 ACAAAAGTGGCAAACGTTTTTCC 59.566 39.130 11.66 15.47 38.24 3.13
8164 10935 2.303163 AAGTGGCAAACGTTTTTCCC 57.697 45.000 20.34 16.65 0.00 3.97
8165 10936 0.462375 AGTGGCAAACGTTTTTCCCC 59.538 50.000 20.34 14.71 0.00 4.81
8166 10937 0.462375 GTGGCAAACGTTTTTCCCCT 59.538 50.000 20.34 0.00 0.00 4.79
8167 10938 1.682323 GTGGCAAACGTTTTTCCCCTA 59.318 47.619 20.34 5.47 0.00 3.53
8168 10939 2.101082 GTGGCAAACGTTTTTCCCCTAA 59.899 45.455 20.34 5.19 0.00 2.69
8169 10940 2.101082 TGGCAAACGTTTTTCCCCTAAC 59.899 45.455 20.34 3.38 0.00 2.34
8170 10941 2.546373 GGCAAACGTTTTTCCCCTAACC 60.546 50.000 11.66 0.00 0.00 2.85
8171 10942 2.546373 GCAAACGTTTTTCCCCTAACCC 60.546 50.000 11.66 0.00 0.00 4.11
8172 10943 2.960384 CAAACGTTTTTCCCCTAACCCT 59.040 45.455 11.66 0.00 0.00 4.34
8173 10944 4.143543 CAAACGTTTTTCCCCTAACCCTA 58.856 43.478 11.66 0.00 0.00 3.53
8174 10945 4.451891 AACGTTTTTCCCCTAACCCTAA 57.548 40.909 0.00 0.00 0.00 2.69
8175 10946 4.451891 ACGTTTTTCCCCTAACCCTAAA 57.548 40.909 0.00 0.00 0.00 1.85
8176 10947 4.802307 ACGTTTTTCCCCTAACCCTAAAA 58.198 39.130 0.00 0.00 0.00 1.52
8177 10948 5.207354 ACGTTTTTCCCCTAACCCTAAAAA 58.793 37.500 0.00 0.00 0.00 1.94
8178 10949 5.068987 ACGTTTTTCCCCTAACCCTAAAAAC 59.931 40.000 10.24 10.24 42.42 2.43
8179 10950 5.509501 CGTTTTTCCCCTAACCCTAAAAACC 60.510 44.000 13.18 1.18 42.67 3.27
8180 10951 3.831642 TTCCCCTAACCCTAAAAACCC 57.168 47.619 0.00 0.00 0.00 4.11
8181 10952 2.002315 TCCCCTAACCCTAAAAACCCC 58.998 52.381 0.00 0.00 0.00 4.95
8182 10953 2.005350 CCCCTAACCCTAAAAACCCCT 58.995 52.381 0.00 0.00 0.00 4.79
8183 10954 2.291996 CCCCTAACCCTAAAAACCCCTG 60.292 54.545 0.00 0.00 0.00 4.45
8184 10955 2.291996 CCCTAACCCTAAAAACCCCTGG 60.292 54.545 0.00 0.00 0.00 4.45
8185 10956 2.453521 CTAACCCTAAAAACCCCTGGC 58.546 52.381 0.00 0.00 0.00 4.85
8186 10957 0.541063 AACCCTAAAAACCCCTGGCG 60.541 55.000 0.00 0.00 0.00 5.69
8187 10958 1.680989 CCCTAAAAACCCCTGGCGG 60.681 63.158 0.00 0.00 0.00 6.13
8188 10959 2.348104 CCTAAAAACCCCTGGCGGC 61.348 63.158 0.00 0.00 0.00 6.53
8189 10960 2.673687 TAAAAACCCCTGGCGGCG 60.674 61.111 0.51 0.51 0.00 6.46
8206 10977 2.281139 GCTGGAGGCGATTAGGGC 60.281 66.667 0.00 0.00 0.00 5.19
8207 10978 2.812619 GCTGGAGGCGATTAGGGCT 61.813 63.158 0.00 0.00 46.65 5.19
8208 10979 1.832912 CTGGAGGCGATTAGGGCTT 59.167 57.895 0.00 0.00 43.66 4.35
8209 10980 0.533755 CTGGAGGCGATTAGGGCTTG 60.534 60.000 0.00 0.00 43.66 4.01
8210 10981 1.227973 GGAGGCGATTAGGGCTTGG 60.228 63.158 0.00 0.00 43.66 3.61
8211 10982 1.696097 GGAGGCGATTAGGGCTTGGA 61.696 60.000 0.00 0.00 43.66 3.53
8212 10983 0.533085 GAGGCGATTAGGGCTTGGAC 60.533 60.000 0.00 0.00 43.66 4.02
8213 10984 1.887707 GGCGATTAGGGCTTGGACG 60.888 63.158 0.00 0.00 0.00 4.79
8214 10985 1.153429 GCGATTAGGGCTTGGACGT 60.153 57.895 0.00 0.00 0.00 4.34
8215 10986 1.429148 GCGATTAGGGCTTGGACGTG 61.429 60.000 0.00 0.00 0.00 4.49
8216 10987 0.810031 CGATTAGGGCTTGGACGTGG 60.810 60.000 0.00 0.00 0.00 4.94
8217 10988 0.539986 GATTAGGGCTTGGACGTGGA 59.460 55.000 0.00 0.00 0.00 4.02
8218 10989 0.988832 ATTAGGGCTTGGACGTGGAA 59.011 50.000 0.00 0.00 0.00 3.53
8219 10990 0.766131 TTAGGGCTTGGACGTGGAAA 59.234 50.000 0.00 0.00 0.00 3.13
8220 10991 0.035739 TAGGGCTTGGACGTGGAAAC 59.964 55.000 0.00 0.00 0.00 2.78
8221 10992 2.265904 GGGCTTGGACGTGGAAACC 61.266 63.158 0.00 0.00 0.00 3.27
8222 10993 1.228154 GGCTTGGACGTGGAAACCT 60.228 57.895 0.00 0.00 0.00 3.50
8223 10994 0.035739 GGCTTGGACGTGGAAACCTA 59.964 55.000 0.00 0.00 0.00 3.08
8224 10995 1.154197 GCTTGGACGTGGAAACCTAC 58.846 55.000 0.00 0.00 0.00 3.18
8225 10996 1.804601 CTTGGACGTGGAAACCTACC 58.195 55.000 0.00 0.00 0.00 3.18
8226 10997 1.346722 CTTGGACGTGGAAACCTACCT 59.653 52.381 0.00 0.00 0.00 3.08
8227 10998 1.426751 TGGACGTGGAAACCTACCTT 58.573 50.000 0.00 0.00 0.00 3.50
8228 10999 1.345415 TGGACGTGGAAACCTACCTTC 59.655 52.381 0.00 0.00 0.00 3.46
8229 11000 1.670967 GGACGTGGAAACCTACCTTCG 60.671 57.143 0.00 0.00 0.00 3.79
8230 11001 0.320160 ACGTGGAAACCTACCTTCGC 60.320 55.000 0.00 0.00 0.00 4.70
8231 11002 1.017701 CGTGGAAACCTACCTTCGCC 61.018 60.000 0.00 0.00 0.00 5.54
8232 11003 0.323957 GTGGAAACCTACCTTCGCCT 59.676 55.000 0.00 0.00 0.00 5.52
8233 11004 0.323629 TGGAAACCTACCTTCGCCTG 59.676 55.000 0.00 0.00 0.00 4.85
8234 11005 0.392595 GGAAACCTACCTTCGCCTGG 60.393 60.000 0.00 0.00 0.00 4.45
8235 11006 0.323957 GAAACCTACCTTCGCCTGGT 59.676 55.000 0.00 0.00 41.28 4.00
8236 11007 0.036306 AAACCTACCTTCGCCTGGTG 59.964 55.000 0.00 0.00 38.42 4.17
8237 11008 0.834687 AACCTACCTTCGCCTGGTGA 60.835 55.000 5.70 5.70 38.42 4.02
8238 11009 0.617820 ACCTACCTTCGCCTGGTGAT 60.618 55.000 11.31 0.00 38.42 3.06
8239 11010 0.541863 CCTACCTTCGCCTGGTGATT 59.458 55.000 11.31 1.48 38.42 2.57
8240 11011 1.473434 CCTACCTTCGCCTGGTGATTC 60.473 57.143 11.31 0.00 38.42 2.52
8241 11012 0.174845 TACCTTCGCCTGGTGATTCG 59.825 55.000 11.31 4.16 38.42 3.34
8242 11013 1.079127 CCTTCGCCTGGTGATTCGT 60.079 57.895 11.31 0.00 0.00 3.85
8243 11014 1.084370 CCTTCGCCTGGTGATTCGTC 61.084 60.000 11.31 0.00 0.00 4.20
8244 11015 1.413767 CTTCGCCTGGTGATTCGTCG 61.414 60.000 11.31 0.00 0.00 5.12
8245 11016 3.554692 CGCCTGGTGATTCGTCGC 61.555 66.667 0.00 0.00 0.00 5.19
8246 11017 3.195698 GCCTGGTGATTCGTCGCC 61.196 66.667 0.00 1.17 40.51 5.54
8247 11018 2.885644 CCTGGTGATTCGTCGCCG 60.886 66.667 3.83 0.00 42.87 6.46
8248 11019 2.885644 CTGGTGATTCGTCGCCGG 60.886 66.667 0.00 0.00 42.87 6.13
8249 11020 3.642778 CTGGTGATTCGTCGCCGGT 62.643 63.158 1.90 0.00 42.87 5.28
8250 11021 3.186047 GGTGATTCGTCGCCGGTG 61.186 66.667 9.28 9.28 33.95 4.94
8251 11022 3.849953 GTGATTCGTCGCCGGTGC 61.850 66.667 11.05 4.65 33.95 5.01
8261 11032 3.400007 GCCGGTGCGAGAGAAATC 58.600 61.111 1.90 0.00 0.00 2.17
8262 11033 2.517450 GCCGGTGCGAGAGAAATCG 61.517 63.158 1.90 0.00 45.48 3.34
8263 11034 1.138883 CCGGTGCGAGAGAAATCGA 59.861 57.895 0.00 0.00 45.56 3.59
8264 11035 0.867753 CCGGTGCGAGAGAAATCGAG 60.868 60.000 0.00 0.00 45.56 4.04
8265 11036 0.867753 CGGTGCGAGAGAAATCGAGG 60.868 60.000 0.00 0.00 45.56 4.63
8266 11037 0.528684 GGTGCGAGAGAAATCGAGGG 60.529 60.000 0.00 0.00 45.56 4.30
8267 11038 0.456221 GTGCGAGAGAAATCGAGGGA 59.544 55.000 0.00 0.00 45.56 4.20
8268 11039 1.135083 GTGCGAGAGAAATCGAGGGAA 60.135 52.381 0.00 0.00 45.56 3.97
8269 11040 1.135139 TGCGAGAGAAATCGAGGGAAG 59.865 52.381 0.00 0.00 45.56 3.46
8270 11041 1.537135 GCGAGAGAAATCGAGGGAAGG 60.537 57.143 0.00 0.00 45.56 3.46
8271 11042 1.067821 CGAGAGAAATCGAGGGAAGGG 59.932 57.143 0.00 0.00 45.56 3.95
8272 11043 0.833949 AGAGAAATCGAGGGAAGGGC 59.166 55.000 0.00 0.00 0.00 5.19
8273 11044 0.530870 GAGAAATCGAGGGAAGGGCG 60.531 60.000 0.00 0.00 0.00 6.13
8274 11045 1.221021 GAAATCGAGGGAAGGGCGT 59.779 57.895 0.00 0.00 0.00 5.68
8275 11046 1.078426 AAATCGAGGGAAGGGCGTG 60.078 57.895 0.00 0.00 0.00 5.34
8276 11047 3.682292 AATCGAGGGAAGGGCGTGC 62.682 63.158 0.00 0.00 0.00 5.34
8278 11049 4.473520 CGAGGGAAGGGCGTGCAT 62.474 66.667 0.00 0.00 0.00 3.96
8279 11050 2.825836 GAGGGAAGGGCGTGCATG 60.826 66.667 0.09 0.09 0.00 4.06
8280 11051 4.431131 AGGGAAGGGCGTGCATGG 62.431 66.667 8.27 0.00 0.00 3.66
8283 11054 3.372730 GAAGGGCGTGCATGGCAA 61.373 61.111 30.87 0.00 41.47 4.52
8284 11055 3.631487 GAAGGGCGTGCATGGCAAC 62.631 63.158 30.87 16.43 41.47 4.17
8295 11066 2.123511 TGGCAACACCCAACCCTG 60.124 61.111 0.00 0.00 46.17 4.45
8296 11067 3.615709 GGCAACACCCAACCCTGC 61.616 66.667 0.00 0.00 0.00 4.85
8297 11068 2.521708 GCAACACCCAACCCTGCT 60.522 61.111 0.00 0.00 0.00 4.24
8298 11069 2.859981 GCAACACCCAACCCTGCTG 61.860 63.158 0.00 0.00 0.00 4.41
8299 11070 2.521708 AACACCCAACCCTGCTGC 60.522 61.111 0.00 0.00 0.00 5.25
8300 11071 4.954970 ACACCCAACCCTGCTGCG 62.955 66.667 0.00 0.00 0.00 5.18
8327 11098 2.569134 GCGGAGAGCGACTCAACT 59.431 61.111 13.97 0.00 46.54 3.16
8328 11099 1.803519 GCGGAGAGCGACTCAACTG 60.804 63.158 13.97 9.21 46.54 3.16
8329 11100 1.876664 CGGAGAGCGACTCAACTGA 59.123 57.895 13.97 0.00 46.54 3.41
8330 11101 0.179176 CGGAGAGCGACTCAACTGAG 60.179 60.000 13.97 5.15 46.54 3.35
8331 11102 1.169577 GGAGAGCGACTCAACTGAGA 58.830 55.000 13.61 0.00 46.54 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 3.812156 TGAACAGGAAAGAGAACGACA 57.188 42.857 0.00 0.00 0.00 4.35
110 232 6.876789 ACACGTCTAATACCAATCACATTTGA 59.123 34.615 0.00 0.00 35.73 2.69
135 257 1.308047 GGTGGCGCATAATGATGTGA 58.692 50.000 10.83 0.00 44.91 3.58
175 297 5.574443 GCTTTAGGCTTTGTCATGTGAAATC 59.426 40.000 0.00 0.00 38.06 2.17
191 313 1.476891 GGGGTTTGCTAAGCTTTAGGC 59.523 52.381 3.20 8.02 42.19 3.93
205 327 4.103469 GGTTTAAGGTGAAATTGGGGGTTT 59.897 41.667 0.00 0.00 0.00 3.27
230 352 0.179045 GCGGATCATGTGGCTAGGTT 60.179 55.000 0.00 0.00 0.00 3.50
234 356 1.067416 GTCGCGGATCATGTGGCTA 59.933 57.895 6.13 0.00 0.00 3.93
424 546 2.242572 CGCCATGAGCTCACCATCG 61.243 63.158 20.97 15.84 40.39 3.84
479 2175 4.612412 TGACCGTTCACGTGGCCC 62.612 66.667 17.00 2.81 37.74 5.80
485 2181 2.962786 TGGCGTTGACCGTTCACG 60.963 61.111 0.00 0.00 39.32 4.35
489 2185 2.177580 CACTGTGGCGTTGACCGTT 61.178 57.895 0.00 0.00 39.32 4.44
511 2207 3.727726 CTGATTGGTATACATGGCGTCA 58.272 45.455 5.01 0.00 0.00 4.35
543 2239 3.608506 CAGATACAGTCACTTGTACGTGC 59.391 47.826 0.00 0.00 36.45 5.34
547 2243 5.317733 AGCTCAGATACAGTCACTTGTAC 57.682 43.478 0.00 0.00 36.45 2.90
550 2246 8.409371 TCTTAATAGCTCAGATACAGTCACTTG 58.591 37.037 0.00 0.00 0.00 3.16
551 2247 8.410141 GTCTTAATAGCTCAGATACAGTCACTT 58.590 37.037 0.00 0.00 0.00 3.16
558 2254 7.661536 AAGGTGTCTTAATAGCTCAGATACA 57.338 36.000 0.00 0.00 31.98 2.29
647 2343 6.694611 AGGTAGAGAAATATTCACCTAGGGT 58.305 40.000 14.81 0.00 34.67 4.34
690 2458 4.217767 AGTGCACGTCTCTGTTATCTGTTA 59.782 41.667 12.01 0.00 0.00 2.41
691 2459 3.005897 AGTGCACGTCTCTGTTATCTGTT 59.994 43.478 12.01 0.00 0.00 3.16
692 2460 2.558795 AGTGCACGTCTCTGTTATCTGT 59.441 45.455 12.01 0.00 0.00 3.41
693 2461 2.919859 CAGTGCACGTCTCTGTTATCTG 59.080 50.000 12.01 0.00 33.00 2.90
694 2462 2.672478 GCAGTGCACGTCTCTGTTATCT 60.672 50.000 11.09 0.00 38.28 1.98
695 2463 1.656095 GCAGTGCACGTCTCTGTTATC 59.344 52.381 11.09 0.00 38.28 1.75
696 2464 1.673033 GGCAGTGCACGTCTCTGTTAT 60.673 52.381 18.61 0.00 38.28 1.89
697 2465 0.319555 GGCAGTGCACGTCTCTGTTA 60.320 55.000 18.61 0.00 38.28 2.41
698 2466 1.595382 GGCAGTGCACGTCTCTGTT 60.595 57.895 18.61 0.00 38.28 3.16
699 2467 1.179174 TAGGCAGTGCACGTCTCTGT 61.179 55.000 18.61 1.07 38.28 3.41
700 2468 0.734253 GTAGGCAGTGCACGTCTCTG 60.734 60.000 18.61 8.63 38.85 3.35
701 2469 0.896019 AGTAGGCAGTGCACGTCTCT 60.896 55.000 18.61 12.84 0.00 3.10
702 2470 0.809385 TAGTAGGCAGTGCACGTCTC 59.191 55.000 18.61 10.32 0.00 3.36
703 2471 1.475403 ATAGTAGGCAGTGCACGTCT 58.525 50.000 18.61 17.39 0.00 4.18
704 2472 2.358267 ACTATAGTAGGCAGTGCACGTC 59.642 50.000 18.61 8.21 0.00 4.34
705 2473 2.376109 ACTATAGTAGGCAGTGCACGT 58.624 47.619 18.61 3.11 0.00 4.49
706 2474 4.148563 CTACTATAGTAGGCAGTGCACG 57.851 50.000 26.21 7.77 43.16 5.34
716 2484 4.558898 CGCAGTTTGGGCCTACTATAGTAG 60.559 50.000 26.74 26.74 45.68 2.57
717 2485 3.319972 CGCAGTTTGGGCCTACTATAGTA 59.680 47.826 12.05 12.05 0.00 1.82
718 2486 2.102588 CGCAGTTTGGGCCTACTATAGT 59.897 50.000 10.87 10.87 0.00 2.12
719 2487 2.548067 CCGCAGTTTGGGCCTACTATAG 60.548 54.545 4.53 0.00 0.00 1.31
720 2488 1.414919 CCGCAGTTTGGGCCTACTATA 59.585 52.381 4.53 0.00 0.00 1.31
721 2489 0.180406 CCGCAGTTTGGGCCTACTAT 59.820 55.000 4.53 0.00 0.00 2.12
759 2527 2.685897 TGCGGTTAGGATGGCAATTTAC 59.314 45.455 0.00 0.00 31.50 2.01
867 2635 2.848694 AGATTGGAGATGATGGTGGTGT 59.151 45.455 0.00 0.00 0.00 4.16
1044 2813 4.367023 CGTTCGTCCCTTCGCCCA 62.367 66.667 0.00 0.00 0.00 5.36
1081 2850 4.260609 ATCGCGCATGCCCCTGAT 62.261 61.111 13.15 7.41 38.08 2.90
1545 3332 1.071471 CCCCTGGTCGTATGGATGC 59.929 63.158 0.00 0.00 0.00 3.91
1577 3364 2.291741 CCTCCAAAGAAGTCACTTGCAC 59.708 50.000 0.00 0.00 0.00 4.57
1648 3435 5.071788 TGGAACTAACTCTGAGTTTCATGGT 59.928 40.000 26.33 13.80 37.47 3.55
1728 3515 1.065551 GCCAATGAAATCGTAGGTGGC 59.934 52.381 0.00 0.00 42.88 5.01
1737 3524 4.156455 TGTCCTAGGAGCCAATGAAATC 57.844 45.455 13.15 0.00 0.00 2.17
1865 3652 2.976185 TCATGGTAGTGAAACCTGGTGA 59.024 45.455 0.00 0.00 40.44 4.02
2531 4318 2.967887 GCATTCCTTGGCTTGGGATAAT 59.032 45.455 0.00 0.00 0.00 1.28
2557 4344 0.945813 GGAGAGCGTGAGTAGCGTAT 59.054 55.000 0.00 0.00 40.04 3.06
2759 4546 9.941664 GTCCAATTTCATCATTGTAATACTCTG 57.058 33.333 0.00 0.00 32.95 3.35
3014 4801 7.526192 GCCTCTGAGACATAGGCTTATATTTCA 60.526 40.741 16.99 0.00 46.08 2.69
3688 5475 1.218844 GAGGGTGGGGCATAACCTTA 58.781 55.000 0.00 0.00 39.10 2.69
3689 5476 0.849094 TGAGGGTGGGGCATAACCTT 60.849 55.000 0.00 0.00 39.10 3.50
3690 5477 1.230149 TGAGGGTGGGGCATAACCT 60.230 57.895 0.00 0.00 39.10 3.50
3691 5478 1.076995 GTGAGGGTGGGGCATAACC 60.077 63.158 0.00 0.00 35.59 2.85
3692 5479 1.076995 GGTGAGGGTGGGGCATAAC 60.077 63.158 0.00 0.00 0.00 1.89
3693 5480 1.143329 TTGGTGAGGGTGGGGCATAA 61.143 55.000 0.00 0.00 0.00 1.90
3773 5759 5.653769 ACAATGTTTTGGCATAGTCTAGCAT 59.346 36.000 0.00 0.00 37.15 3.79
3803 5789 1.996191 GCGTCTCTGGACTGAAACATC 59.004 52.381 0.00 0.00 40.10 3.06
3843 5830 4.708177 TGCCTGAATCCTATAAACAGAGC 58.292 43.478 0.00 0.00 0.00 4.09
3857 5844 8.121305 TCATACAAACATTTTACTGCCTGAAT 57.879 30.769 0.00 0.00 0.00 2.57
4054 6041 2.504367 ACCAGAAATTCCAACCACGAG 58.496 47.619 0.00 0.00 0.00 4.18
4106 6093 5.185454 AGAGTAACAATTCATGATGCCGAA 58.815 37.500 0.00 0.00 0.00 4.30
4293 6280 6.295180 GGTCTTATATTTAGGAACGGAGGGAG 60.295 46.154 0.00 0.00 0.00 4.30
4294 6281 5.541484 GGTCTTATATTTAGGAACGGAGGGA 59.459 44.000 0.00 0.00 0.00 4.20
4295 6282 5.543020 AGGTCTTATATTTAGGAACGGAGGG 59.457 44.000 0.00 0.00 0.00 4.30
4297 6284 8.959705 AAAAGGTCTTATATTTAGGAACGGAG 57.040 34.615 0.00 0.00 0.00 4.63
4314 6301 8.425703 GCCTATAGTGAAATCTCTAAAAGGTCT 58.574 37.037 17.01 0.00 34.75 3.85
4315 6302 8.425703 AGCCTATAGTGAAATCTCTAAAAGGTC 58.574 37.037 17.01 12.59 34.75 3.85
4316 6303 8.325477 AGCCTATAGTGAAATCTCTAAAAGGT 57.675 34.615 17.01 5.96 34.75 3.50
4317 6304 9.699703 GTAGCCTATAGTGAAATCTCTAAAAGG 57.300 37.037 14.14 14.14 35.04 3.11
4323 6310 8.941995 TGTATGTAGCCTATAGTGAAATCTCT 57.058 34.615 0.00 0.00 0.00 3.10
4324 6311 9.015367 TCTGTATGTAGCCTATAGTGAAATCTC 57.985 37.037 0.00 0.00 0.00 2.75
4325 6312 8.941995 TCTGTATGTAGCCTATAGTGAAATCT 57.058 34.615 0.00 0.00 0.00 2.40
4326 6313 7.757624 GCTCTGTATGTAGCCTATAGTGAAATC 59.242 40.741 0.00 0.00 32.40 2.17
4327 6314 7.233553 TGCTCTGTATGTAGCCTATAGTGAAAT 59.766 37.037 0.00 0.00 37.97 2.17
4328 6315 6.549736 TGCTCTGTATGTAGCCTATAGTGAAA 59.450 38.462 0.00 0.00 37.97 2.69
4329 6316 6.068670 TGCTCTGTATGTAGCCTATAGTGAA 58.931 40.000 0.00 0.00 37.97 3.18
4330 6317 5.631119 TGCTCTGTATGTAGCCTATAGTGA 58.369 41.667 0.00 0.00 37.97 3.41
4331 6318 5.966742 TGCTCTGTATGTAGCCTATAGTG 57.033 43.478 0.00 0.00 37.97 2.74
4332 6319 6.978674 TTTGCTCTGTATGTAGCCTATAGT 57.021 37.500 0.00 0.00 37.97 2.12
4333 6320 8.090831 TCATTTTGCTCTGTATGTAGCCTATAG 58.909 37.037 0.00 0.00 37.97 1.31
4334 6321 7.962441 TCATTTTGCTCTGTATGTAGCCTATA 58.038 34.615 0.00 0.00 37.97 1.31
4335 6322 6.830912 TCATTTTGCTCTGTATGTAGCCTAT 58.169 36.000 0.00 0.00 37.97 2.57
4336 6323 6.127054 ACTCATTTTGCTCTGTATGTAGCCTA 60.127 38.462 0.00 0.00 37.97 3.93
4337 6324 5.102953 TCATTTTGCTCTGTATGTAGCCT 57.897 39.130 0.00 0.00 37.97 4.58
4338 6325 4.878397 ACTCATTTTGCTCTGTATGTAGCC 59.122 41.667 0.00 0.00 37.97 3.93
4339 6326 5.582269 TCACTCATTTTGCTCTGTATGTAGC 59.418 40.000 0.00 0.00 39.25 3.58
4340 6327 7.601073 TTCACTCATTTTGCTCTGTATGTAG 57.399 36.000 0.00 0.00 0.00 2.74
4341 6328 8.043113 AGATTCACTCATTTTGCTCTGTATGTA 58.957 33.333 0.00 0.00 0.00 2.29
4342 6329 6.883217 AGATTCACTCATTTTGCTCTGTATGT 59.117 34.615 0.00 0.00 0.00 2.29
4343 6330 7.317842 AGATTCACTCATTTTGCTCTGTATG 57.682 36.000 0.00 0.00 0.00 2.39
4344 6331 8.043113 TGTAGATTCACTCATTTTGCTCTGTAT 58.957 33.333 0.00 0.00 0.00 2.29
4345 6332 7.331934 GTGTAGATTCACTCATTTTGCTCTGTA 59.668 37.037 0.00 0.00 35.68 2.74
4346 6333 6.148480 GTGTAGATTCACTCATTTTGCTCTGT 59.852 38.462 0.00 0.00 35.68 3.41
4347 6334 6.370994 AGTGTAGATTCACTCATTTTGCTCTG 59.629 38.462 0.00 0.00 44.07 3.35
4348 6335 6.471146 AGTGTAGATTCACTCATTTTGCTCT 58.529 36.000 0.00 0.00 44.07 4.09
4349 6336 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
4380 6367 9.339850 GGACTACATACGGATGTATATAGACAT 57.660 37.037 20.64 12.70 45.42 3.06
4381 6368 8.323567 TGGACTACATACGGATGTATATAGACA 58.676 37.037 20.64 12.12 45.42 3.41
4382 6369 8.728337 TGGACTACATACGGATGTATATAGAC 57.272 38.462 20.64 10.95 45.42 2.59
4386 6373 9.121658 CACTATGGACTACATACGGATGTATAT 57.878 37.037 20.64 12.15 45.42 0.86
4387 6374 7.555195 CCACTATGGACTACATACGGATGTATA 59.445 40.741 20.64 10.04 42.60 1.47
4388 6375 6.377429 CCACTATGGACTACATACGGATGTAT 59.623 42.308 20.64 9.39 42.60 2.29
4389 6376 5.708697 CCACTATGGACTACATACGGATGTA 59.291 44.000 19.32 19.32 41.62 2.29
4390 6377 4.523173 CCACTATGGACTACATACGGATGT 59.477 45.833 19.12 19.12 44.08 3.06
4391 6378 4.765339 TCCACTATGGACTACATACGGATG 59.235 45.833 5.94 5.94 42.67 3.51
4392 6379 4.994282 TCCACTATGGACTACATACGGAT 58.006 43.478 0.00 0.00 42.67 4.18
4393 6380 4.442401 TCCACTATGGACTACATACGGA 57.558 45.455 0.00 0.00 42.67 4.69
4404 6391 6.903534 AGACCTTTTAGAGATTCCACTATGGA 59.096 38.462 0.00 0.00 46.61 3.41
4405 6392 7.130681 AGACCTTTTAGAGATTCCACTATGG 57.869 40.000 0.00 0.00 39.43 2.74
4421 6408 7.991460 CCTCCGTTCCTAAATATAAGACCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
4422 6409 7.419865 CCCTCCGTTCCTAAATATAAGACCTTT 60.420 40.741 0.00 0.00 0.00 3.11
4423 6410 6.042897 CCCTCCGTTCCTAAATATAAGACCTT 59.957 42.308 0.00 0.00 0.00 3.50
4424 6411 5.543020 CCCTCCGTTCCTAAATATAAGACCT 59.457 44.000 0.00 0.00 0.00 3.85
4425 6412 5.541484 TCCCTCCGTTCCTAAATATAAGACC 59.459 44.000 0.00 0.00 0.00 3.85
4426 6413 6.267242 ACTCCCTCCGTTCCTAAATATAAGAC 59.733 42.308 0.00 0.00 0.00 3.01
4427 6414 6.379579 ACTCCCTCCGTTCCTAAATATAAGA 58.620 40.000 0.00 0.00 0.00 2.10
4428 6415 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
4429 6416 7.951806 TCATACTCCCTCCGTTCCTAAATATAA 59.048 37.037 0.00 0.00 0.00 0.98
4430 6417 7.395489 GTCATACTCCCTCCGTTCCTAAATATA 59.605 40.741 0.00 0.00 0.00 0.86
4431 6418 6.210984 GTCATACTCCCTCCGTTCCTAAATAT 59.789 42.308 0.00 0.00 0.00 1.28
4432 6419 5.537674 GTCATACTCCCTCCGTTCCTAAATA 59.462 44.000 0.00 0.00 0.00 1.40
4433 6420 4.344390 GTCATACTCCCTCCGTTCCTAAAT 59.656 45.833 0.00 0.00 0.00 1.40
4434 6421 3.703052 GTCATACTCCCTCCGTTCCTAAA 59.297 47.826 0.00 0.00 0.00 1.85
4435 6422 3.294214 GTCATACTCCCTCCGTTCCTAA 58.706 50.000 0.00 0.00 0.00 2.69
4436 6423 2.242965 TGTCATACTCCCTCCGTTCCTA 59.757 50.000 0.00 0.00 0.00 2.94
4437 6424 1.006758 TGTCATACTCCCTCCGTTCCT 59.993 52.381 0.00 0.00 0.00 3.36
4438 6425 1.136500 GTGTCATACTCCCTCCGTTCC 59.864 57.143 0.00 0.00 0.00 3.62
4439 6426 1.822990 TGTGTCATACTCCCTCCGTTC 59.177 52.381 0.00 0.00 0.00 3.95
4440 6427 1.933021 TGTGTCATACTCCCTCCGTT 58.067 50.000 0.00 0.00 0.00 4.44
4441 6428 2.160721 ATGTGTCATACTCCCTCCGT 57.839 50.000 0.00 0.00 0.00 4.69
4442 6429 2.296471 GGTATGTGTCATACTCCCTCCG 59.704 54.545 16.09 0.00 0.00 4.63
4443 6430 3.305720 TGGTATGTGTCATACTCCCTCC 58.694 50.000 16.09 3.48 0.00 4.30
4444 6431 3.961408 ACTGGTATGTGTCATACTCCCTC 59.039 47.826 16.09 4.02 0.00 4.30
4445 6432 3.995636 ACTGGTATGTGTCATACTCCCT 58.004 45.455 16.09 0.00 0.00 4.20
4446 6433 4.262079 GCTACTGGTATGTGTCATACTCCC 60.262 50.000 16.09 4.60 0.00 4.30
4447 6434 4.341235 TGCTACTGGTATGTGTCATACTCC 59.659 45.833 16.09 5.16 0.00 3.85
4448 6435 5.515797 TGCTACTGGTATGTGTCATACTC 57.484 43.478 16.09 9.32 0.00 2.59
4449 6436 6.209589 CCTATGCTACTGGTATGTGTCATACT 59.790 42.308 16.09 3.67 0.00 2.12
4450 6437 6.208797 TCCTATGCTACTGGTATGTGTCATAC 59.791 42.308 10.34 10.34 0.00 2.39
4451 6438 6.311735 TCCTATGCTACTGGTATGTGTCATA 58.688 40.000 0.00 0.00 0.00 2.15
4452 6439 5.147767 TCCTATGCTACTGGTATGTGTCAT 58.852 41.667 0.00 0.00 0.00 3.06
4453 6440 4.542697 TCCTATGCTACTGGTATGTGTCA 58.457 43.478 0.00 0.00 0.00 3.58
4454 6441 5.336849 GGATCCTATGCTACTGGTATGTGTC 60.337 48.000 3.84 0.00 0.00 3.67
4455 6442 4.528596 GGATCCTATGCTACTGGTATGTGT 59.471 45.833 3.84 0.00 0.00 3.72
4456 6443 4.528206 TGGATCCTATGCTACTGGTATGTG 59.472 45.833 14.23 0.00 0.00 3.21
4457 6444 4.528596 GTGGATCCTATGCTACTGGTATGT 59.471 45.833 14.23 0.00 0.00 2.29
4615 6603 0.038744 AGAGACGGACGTTTAGGGGA 59.961 55.000 0.00 0.00 0.00 4.81
4643 6631 2.244695 TGAGTGCTCCGGACTTAGAAA 58.755 47.619 0.00 0.00 0.00 2.52
4731 6719 1.089920 AGCATGCGGAAGAACATGTC 58.910 50.000 13.01 0.00 44.43 3.06
4839 6827 3.544684 TGAAGGAATGGATTCGGACATG 58.455 45.455 0.00 0.00 37.67 3.21
5386 7497 1.676968 CCATCCAACACCGTCCTGA 59.323 57.895 0.00 0.00 0.00 3.86
5411 7522 1.664965 GACTGTGCTGTCCGGACAC 60.665 63.158 33.23 26.88 39.19 3.67
5430 7541 0.179086 ACATCGCATGCATACGTCCA 60.179 50.000 19.57 0.35 0.00 4.02
5444 7555 1.079127 AAAGCGGACCCTCACATCG 60.079 57.895 0.00 0.00 0.00 3.84
5448 7559 0.034896 TCTTCAAAGCGGACCCTCAC 59.965 55.000 0.00 0.00 0.00 3.51
5464 7575 2.584835 TGCACACTAAAGGCCATCTT 57.415 45.000 5.01 0.00 37.28 2.40
6183 8317 6.638610 ACAATTTCAAAGGACACACAAATCA 58.361 32.000 0.00 0.00 0.00 2.57
6596 8916 6.936335 TCTATTGTCACAATCTTTGCTTCAGA 59.064 34.615 6.21 0.00 0.00 3.27
6703 9023 1.214305 TGGCCCAGGCTGGATACTTT 61.214 55.000 34.84 0.00 40.96 2.66
6803 9126 4.528596 TCAGACTACAGAAAGAAAGGGAGG 59.471 45.833 0.00 0.00 0.00 4.30
6804 9127 5.474825 GTCAGACTACAGAAAGAAAGGGAG 58.525 45.833 0.00 0.00 0.00 4.30
7335 9902 8.388103 CCTGACGTAATCTAAATTTGTTAGGTG 58.612 37.037 16.07 8.19 34.51 4.00
7475 10042 9.778993 AAAGATTGACAAGATTTGATAATGACG 57.221 29.630 0.00 0.00 0.00 4.35
7590 10157 5.189934 AGACTTGTATTTAGGAACAGAGGGG 59.810 44.000 0.00 0.00 0.00 4.79
7709 10301 5.086058 CCATGTTAAGTATGAACACGCAAC 58.914 41.667 0.00 0.00 43.59 4.17
7753 10345 3.500680 TGATACCAAAAGTCAAGTTCGCC 59.499 43.478 0.00 0.00 0.00 5.54
7883 10521 1.296056 AATTGCGTGTACAGGGCGTC 61.296 55.000 16.75 5.11 0.00 5.19
8002 10641 2.616842 CACCAACTTGTTCGGTAGCTTT 59.383 45.455 0.00 0.00 0.00 3.51
8062 10833 0.758734 TCCTATCCGTGGCAATGGAG 59.241 55.000 8.35 0.00 44.90 3.86
8094 10865 1.538512 TCTAGACAACCGTGAAGACCG 59.461 52.381 0.00 0.00 0.00 4.79
8101 10872 4.703645 TCTCATCTTCTAGACAACCGTG 57.296 45.455 0.00 0.00 0.00 4.94
8136 10907 3.394719 ACGTTTGCCACTTTTGTTTGTT 58.605 36.364 0.00 0.00 0.00 2.83
8137 10908 3.033368 ACGTTTGCCACTTTTGTTTGT 57.967 38.095 0.00 0.00 0.00 2.83
8138 10909 4.397064 AAACGTTTGCCACTTTTGTTTG 57.603 36.364 13.81 0.00 0.00 2.93
8139 10910 5.425577 AAAAACGTTTGCCACTTTTGTTT 57.574 30.435 15.46 0.00 27.65 2.83
8140 10911 4.083749 GGAAAAACGTTTGCCACTTTTGTT 60.084 37.500 21.71 7.45 27.65 2.83
8141 10912 3.433957 GGAAAAACGTTTGCCACTTTTGT 59.566 39.130 21.71 0.00 27.65 2.83
8142 10913 3.997276 GGAAAAACGTTTGCCACTTTTG 58.003 40.909 21.71 0.00 27.65 2.44
8150 10921 2.546373 GGGTTAGGGGAAAAACGTTTGC 60.546 50.000 15.46 9.82 34.50 3.68
8151 10922 2.960384 AGGGTTAGGGGAAAAACGTTTG 59.040 45.455 15.46 0.00 0.00 2.93
8152 10923 3.317455 AGGGTTAGGGGAAAAACGTTT 57.683 42.857 7.96 7.96 0.00 3.60
8153 10924 4.451891 TTAGGGTTAGGGGAAAAACGTT 57.548 40.909 0.00 0.00 0.00 3.99
8154 10925 4.451891 TTTAGGGTTAGGGGAAAAACGT 57.548 40.909 0.00 0.00 0.00 3.99
8155 10926 5.509501 GGTTTTTAGGGTTAGGGGAAAAACG 60.510 44.000 12.51 0.00 44.87 3.60
8156 10927 5.221702 GGGTTTTTAGGGTTAGGGGAAAAAC 60.222 44.000 11.09 11.09 43.94 2.43
8157 10928 4.906664 GGGTTTTTAGGGTTAGGGGAAAAA 59.093 41.667 0.00 0.00 0.00 1.94
8158 10929 4.491675 GGGTTTTTAGGGTTAGGGGAAAA 58.508 43.478 0.00 0.00 0.00 2.29
8159 10930 3.181408 GGGGTTTTTAGGGTTAGGGGAAA 60.181 47.826 0.00 0.00 0.00 3.13
8160 10931 2.382993 GGGGTTTTTAGGGTTAGGGGAA 59.617 50.000 0.00 0.00 0.00 3.97
8161 10932 2.002315 GGGGTTTTTAGGGTTAGGGGA 58.998 52.381 0.00 0.00 0.00 4.81
8162 10933 2.005350 AGGGGTTTTTAGGGTTAGGGG 58.995 52.381 0.00 0.00 0.00 4.79
8163 10934 2.291996 CCAGGGGTTTTTAGGGTTAGGG 60.292 54.545 0.00 0.00 0.00 3.53
8164 10935 2.886809 GCCAGGGGTTTTTAGGGTTAGG 60.887 54.545 0.00 0.00 0.00 2.69
8165 10936 2.453521 GCCAGGGGTTTTTAGGGTTAG 58.546 52.381 0.00 0.00 0.00 2.34
8166 10937 1.272037 CGCCAGGGGTTTTTAGGGTTA 60.272 52.381 0.00 0.00 0.00 2.85
8167 10938 0.541063 CGCCAGGGGTTTTTAGGGTT 60.541 55.000 0.00 0.00 0.00 4.11
8168 10939 1.076014 CGCCAGGGGTTTTTAGGGT 59.924 57.895 0.00 0.00 0.00 4.34
8169 10940 1.680989 CCGCCAGGGGTTTTTAGGG 60.681 63.158 2.23 0.00 0.00 3.53
8170 10941 2.348104 GCCGCCAGGGGTTTTTAGG 61.348 63.158 2.23 0.00 38.20 2.69
8171 10942 2.696759 CGCCGCCAGGGGTTTTTAG 61.697 63.158 2.23 0.00 44.60 1.85
8172 10943 2.673687 CGCCGCCAGGGGTTTTTA 60.674 61.111 2.23 0.00 44.60 1.52
8189 10960 2.281139 GCCCTAATCGCCTCCAGC 60.281 66.667 0.00 0.00 38.52 4.85
8190 10961 0.533755 CAAGCCCTAATCGCCTCCAG 60.534 60.000 0.00 0.00 0.00 3.86
8191 10962 1.526887 CAAGCCCTAATCGCCTCCA 59.473 57.895 0.00 0.00 0.00 3.86
8192 10963 1.227973 CCAAGCCCTAATCGCCTCC 60.228 63.158 0.00 0.00 0.00 4.30
8193 10964 0.533085 GTCCAAGCCCTAATCGCCTC 60.533 60.000 0.00 0.00 0.00 4.70
8194 10965 1.527370 GTCCAAGCCCTAATCGCCT 59.473 57.895 0.00 0.00 0.00 5.52
8195 10966 1.887707 CGTCCAAGCCCTAATCGCC 60.888 63.158 0.00 0.00 0.00 5.54
8196 10967 1.153429 ACGTCCAAGCCCTAATCGC 60.153 57.895 0.00 0.00 0.00 4.58
8197 10968 0.810031 CCACGTCCAAGCCCTAATCG 60.810 60.000 0.00 0.00 0.00 3.34
8198 10969 0.539986 TCCACGTCCAAGCCCTAATC 59.460 55.000 0.00 0.00 0.00 1.75
8199 10970 0.988832 TTCCACGTCCAAGCCCTAAT 59.011 50.000 0.00 0.00 0.00 1.73
8200 10971 0.766131 TTTCCACGTCCAAGCCCTAA 59.234 50.000 0.00 0.00 0.00 2.69
8201 10972 0.035739 GTTTCCACGTCCAAGCCCTA 59.964 55.000 0.00 0.00 0.00 3.53
8202 10973 1.228154 GTTTCCACGTCCAAGCCCT 60.228 57.895 0.00 0.00 0.00 5.19
8203 10974 2.265904 GGTTTCCACGTCCAAGCCC 61.266 63.158 0.00 0.00 0.00 5.19
8204 10975 0.035739 TAGGTTTCCACGTCCAAGCC 59.964 55.000 1.63 1.63 0.00 4.35
8205 10976 1.154197 GTAGGTTTCCACGTCCAAGC 58.846 55.000 0.00 0.00 0.00 4.01
8206 10977 1.346722 AGGTAGGTTTCCACGTCCAAG 59.653 52.381 0.00 0.00 0.00 3.61
8207 10978 1.426751 AGGTAGGTTTCCACGTCCAA 58.573 50.000 0.00 0.00 0.00 3.53
8208 10979 1.345415 GAAGGTAGGTTTCCACGTCCA 59.655 52.381 0.00 0.00 0.00 4.02
8209 10980 1.670967 CGAAGGTAGGTTTCCACGTCC 60.671 57.143 0.00 0.00 0.00 4.79
8210 10981 1.706443 CGAAGGTAGGTTTCCACGTC 58.294 55.000 0.00 0.00 0.00 4.34
8211 10982 0.320160 GCGAAGGTAGGTTTCCACGT 60.320 55.000 0.00 0.00 32.91 4.49
8212 10983 1.017701 GGCGAAGGTAGGTTTCCACG 61.018 60.000 0.00 0.00 0.00 4.94
8213 10984 0.323957 AGGCGAAGGTAGGTTTCCAC 59.676 55.000 0.00 0.00 0.00 4.02
8214 10985 0.323629 CAGGCGAAGGTAGGTTTCCA 59.676 55.000 0.00 0.00 0.00 3.53
8215 10986 0.392595 CCAGGCGAAGGTAGGTTTCC 60.393 60.000 0.00 0.00 0.00 3.13
8216 10987 0.323957 ACCAGGCGAAGGTAGGTTTC 59.676 55.000 0.00 0.00 37.67 2.78
8217 10988 0.036306 CACCAGGCGAAGGTAGGTTT 59.964 55.000 0.00 0.00 37.23 3.27
8218 10989 0.834687 TCACCAGGCGAAGGTAGGTT 60.835 55.000 0.00 0.00 37.23 3.50
8219 10990 0.617820 ATCACCAGGCGAAGGTAGGT 60.618 55.000 0.00 0.00 37.23 3.08
8220 10991 0.541863 AATCACCAGGCGAAGGTAGG 59.458 55.000 0.00 0.00 37.23 3.18
8221 10992 1.802880 CGAATCACCAGGCGAAGGTAG 60.803 57.143 0.00 0.00 37.23 3.18
8222 10993 0.174845 CGAATCACCAGGCGAAGGTA 59.825 55.000 0.00 0.00 37.23 3.08
8223 10994 1.079127 CGAATCACCAGGCGAAGGT 60.079 57.895 0.00 0.00 40.85 3.50
8224 10995 1.079127 ACGAATCACCAGGCGAAGG 60.079 57.895 0.00 0.00 0.00 3.46
8225 10996 1.413767 CGACGAATCACCAGGCGAAG 61.414 60.000 0.00 0.00 0.00 3.79
8226 10997 1.445410 CGACGAATCACCAGGCGAA 60.445 57.895 0.00 0.00 0.00 4.70
8227 10998 2.180769 CGACGAATCACCAGGCGA 59.819 61.111 0.00 0.00 0.00 5.54
8228 10999 3.554692 GCGACGAATCACCAGGCG 61.555 66.667 0.00 0.00 0.00 5.52
8229 11000 3.195698 GGCGACGAATCACCAGGC 61.196 66.667 0.00 0.00 0.00 4.85
8244 11015 2.517450 CGATTTCTCTCGCACCGGC 61.517 63.158 0.00 0.00 0.00 6.13
8245 11016 0.867753 CTCGATTTCTCTCGCACCGG 60.868 60.000 0.00 0.00 38.52 5.28
8246 11017 0.867753 CCTCGATTTCTCTCGCACCG 60.868 60.000 0.00 0.00 38.52 4.94
8247 11018 0.528684 CCCTCGATTTCTCTCGCACC 60.529 60.000 0.00 0.00 38.52 5.01
8248 11019 0.456221 TCCCTCGATTTCTCTCGCAC 59.544 55.000 0.00 0.00 38.52 5.34
8249 11020 1.135139 CTTCCCTCGATTTCTCTCGCA 59.865 52.381 0.00 0.00 38.52 5.10
8250 11021 1.537135 CCTTCCCTCGATTTCTCTCGC 60.537 57.143 0.00 0.00 38.52 5.03
8251 11022 1.067821 CCCTTCCCTCGATTTCTCTCG 59.932 57.143 0.00 0.00 39.99 4.04
8252 11023 1.202592 GCCCTTCCCTCGATTTCTCTC 60.203 57.143 0.00 0.00 0.00 3.20
8253 11024 0.833949 GCCCTTCCCTCGATTTCTCT 59.166 55.000 0.00 0.00 0.00 3.10
8254 11025 0.530870 CGCCCTTCCCTCGATTTCTC 60.531 60.000 0.00 0.00 0.00 2.87
8255 11026 1.265454 ACGCCCTTCCCTCGATTTCT 61.265 55.000 0.00 0.00 0.00 2.52
8256 11027 1.090052 CACGCCCTTCCCTCGATTTC 61.090 60.000 0.00 0.00 0.00 2.17
8257 11028 1.078426 CACGCCCTTCCCTCGATTT 60.078 57.895 0.00 0.00 0.00 2.17
8258 11029 2.584608 CACGCCCTTCCCTCGATT 59.415 61.111 0.00 0.00 0.00 3.34
8259 11030 4.162690 GCACGCCCTTCCCTCGAT 62.163 66.667 0.00 0.00 0.00 3.59
8261 11032 4.473520 ATGCACGCCCTTCCCTCG 62.474 66.667 0.00 0.00 0.00 4.63
8262 11033 2.825836 CATGCACGCCCTTCCCTC 60.826 66.667 0.00 0.00 0.00 4.30
8263 11034 4.431131 CCATGCACGCCCTTCCCT 62.431 66.667 0.00 0.00 0.00 4.20
8266 11037 3.372730 TTGCCATGCACGCCCTTC 61.373 61.111 5.21 0.00 38.71 3.46
8267 11038 3.683937 GTTGCCATGCACGCCCTT 61.684 61.111 5.21 0.00 38.71 3.95
8268 11039 4.972733 TGTTGCCATGCACGCCCT 62.973 61.111 5.21 0.00 38.71 5.19
8269 11040 4.722855 GTGTTGCCATGCACGCCC 62.723 66.667 5.21 0.00 38.71 6.13
8270 11041 4.722855 GGTGTTGCCATGCACGCC 62.723 66.667 5.21 5.14 38.71 5.68
8271 11042 4.722855 GGGTGTTGCCATGCACGC 62.723 66.667 0.00 0.00 38.71 5.34
8272 11043 2.854401 TTGGGTGTTGCCATGCACG 61.854 57.895 0.00 0.00 38.71 5.34
8273 11044 1.300853 GTTGGGTGTTGCCATGCAC 60.301 57.895 0.00 0.00 38.71 4.57
8274 11045 2.506061 GGTTGGGTGTTGCCATGCA 61.506 57.895 0.00 0.00 39.65 3.96
8275 11046 2.343387 GGTTGGGTGTTGCCATGC 59.657 61.111 0.00 0.00 39.65 4.06
8276 11047 1.533753 AGGGTTGGGTGTTGCCATG 60.534 57.895 0.00 0.00 39.65 3.66
8277 11048 1.533753 CAGGGTTGGGTGTTGCCAT 60.534 57.895 0.00 0.00 39.65 4.40
8278 11049 2.123511 CAGGGTTGGGTGTTGCCA 60.124 61.111 0.00 0.00 39.65 4.92
8279 11050 3.615709 GCAGGGTTGGGTGTTGCC 61.616 66.667 0.00 0.00 0.00 4.52
8280 11051 2.521708 AGCAGGGTTGGGTGTTGC 60.522 61.111 0.00 0.00 35.09 4.17
8281 11052 2.859981 GCAGCAGGGTTGGGTGTTG 61.860 63.158 0.00 0.00 36.21 3.33
8282 11053 2.521708 GCAGCAGGGTTGGGTGTT 60.522 61.111 0.00 0.00 36.21 3.32
8283 11054 4.954970 CGCAGCAGGGTTGGGTGT 62.955 66.667 0.00 0.00 36.21 4.16
8308 11079 3.760035 TTGAGTCGCTCTCCGCCC 61.760 66.667 8.07 0.00 42.12 6.13
8309 11080 2.507324 GTTGAGTCGCTCTCCGCC 60.507 66.667 8.07 0.00 42.12 6.13
8310 11081 1.803519 CAGTTGAGTCGCTCTCCGC 60.804 63.158 8.07 1.21 42.12 5.54
8311 11082 0.179176 CTCAGTTGAGTCGCTCTCCG 60.179 60.000 0.91 0.00 42.12 4.63
8312 11083 1.169577 TCTCAGTTGAGTCGCTCTCC 58.830 55.000 8.85 0.31 42.60 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.