AutoCloner

Multiple sequence alignment - TraesCS5D01G125600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5D01G125600	chr5D	100.000	2537	0	0	1	2537	192272493	192269957	0.000000e+00	4686.0
1	TraesCS5D01G125600	chr2D	97.231	1661	36	4	1	1658	608389236	608387583	0.000000e+00	2804.0
2	TraesCS5D01G125600	chr2D	90.417	240	22	1	1754	1993	444860816	444861054	5.270000e-82	315.0
3	TraesCS5D01G125600	chr2D	90.000	240	23	1	1754	1993	506564474	506564712	2.450000e-80	309.0
4	TraesCS5D01G125600	chr5A	92.953	1632	99	12	36	1656	567945361	567946987	0.000000e+00	2362.0
5	TraesCS5D01G125600	chr5A	93.020	1404	64	20	2	1398	708304142	708302766	0.000000e+00	2019.0
6	TraesCS5D01G125600	chr5A	96.688	634	20	1	1904	2537	230073213	230072581	0.000000e+00	1053.0
7	TraesCS5D01G125600	chr5A	93.333	75	3	1	2	74	567945101	567945175	2.670000e-20	110.0
8	TraesCS5D01G125600	chr5A	91.489	47	3	1	1708	1754	230079060	230079015	2.110000e-06	63.9
9	TraesCS5D01G125600	chr3A	92.755	1532	84	11	2	1530	18849857	18848350	0.000000e+00	2189.0
10	TraesCS5D01G125600	chr3A	92.685	1531	85	11	2	1529	18868239	18866733	0.000000e+00	2182.0
11	TraesCS5D01G125600	chr3A	91.535	508	38	4	2	506	18878217	18877712	0.000000e+00	695.0
12	TraesCS5D01G125600	chr3A	90.551	508	43	4	2	506	18883034	18882529	0.000000e+00	667.0
13	TraesCS5D01G125600	chr7A	94.317	1390	69	7	1	1384	238585872	238584487	0.000000e+00	2121.0
14	TraesCS5D01G125600	chr7A	90.456	241	21	2	1754	1993	424628699	424628938	1.460000e-82	316.0
15	TraesCS5D01G125600	chr5B	95.502	956	36	4	703	1655	609885922	609886873	0.000000e+00	1520.0
16	TraesCS5D01G125600	chr5B	95.094	958	39	5	703	1656	609890176	609891129	0.000000e+00	1502.0
17	TraesCS5D01G125600	chr5B	95.089	957	39	5	703	1655	609881667	609882619	0.000000e+00	1500.0
18	TraesCS5D01G125600	chr5B	94.430	772	39	4	1766	2537	196471913	196471146	0.000000e+00	1184.0
19	TraesCS5D01G125600	chr5B	84.507	71	3	2	1713	1783	196472004	196471942	2.110000e-06	63.9
20	TraesCS5D01G125600	chr6B	94.671	957	43	6	703	1655	395675858	395674906	0.000000e+00	1478.0
21	TraesCS5D01G125600	chr4B	92.901	493	29	6	1170	1656	193974339	193974831	0.000000e+00	712.0
22	TraesCS5D01G125600	chr1B	93.130	262	12	3	1394	1655	660656132	660655877	1.840000e-101	379.0
23	TraesCS5D01G125600	chr7B	83.571	420	42	16	23	427	688586534	688586941	3.990000e-98	368.0
24	TraesCS5D01G125600	chr7B	90.204	245	22	2	1754	1998	290835543	290835785	4.070000e-83	318.0
25	TraesCS5D01G125600	chr7B	89.069	247	25	2	1750	1996	414077422	414077178	3.170000e-79	305.0
26	TraesCS5D01G125600	chr3D	89.723	253	24	2	1754	2006	501481013	501480763	3.150000e-84	322.0
27	TraesCS5D01G125600	chr7D	89.600	250	24	2	1745	1993	535881132	535881380	1.460000e-82	316.0
28	TraesCS5D01G125600	chr7D	90.417	240	22	1	1754	1993	93733307	93733545	5.270000e-82	315.0
29	TraesCS5D01G125600	chr2A	89.189	111	3	2	503	613	19652759	19652658	2.050000e-26	130.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5D01G125600	chr5D	192269957	192272493	2536	True	4686.000000	4686	100.000000	1	2537	1	chr5D.!!$R1	2536
1	TraesCS5D01G125600	chr2D	608387583	608389236	1653	True	2804.000000	2804	97.231000	1	1658	1	chr2D.!!$R1	1657
2	TraesCS5D01G125600	chr5A	708302766	708304142	1376	True	2019.000000	2019	93.020000	2	1398	1	chr5A.!!$R3	1396
3	TraesCS5D01G125600	chr5A	567945101	567946987	1886	False	1236.000000	2362	93.143000	2	1656	2	chr5A.!!$F1	1654
4	TraesCS5D01G125600	chr5A	230072581	230073213	632	True	1053.000000	1053	96.688000	1904	2537	1	chr5A.!!$R1	633
5	TraesCS5D01G125600	chr3A	18848350	18849857	1507	True	2189.000000	2189	92.755000	2	1530	1	chr3A.!!$R1	1528
6	TraesCS5D01G125600	chr3A	18866733	18868239	1506	True	2182.000000	2182	92.685000	2	1529	1	chr3A.!!$R2	1527
7	TraesCS5D01G125600	chr3A	18877712	18878217	505	True	695.000000	695	91.535000	2	506	1	chr3A.!!$R3	504
8	TraesCS5D01G125600	chr3A	18882529	18883034	505	True	667.000000	667	90.551000	2	506	1	chr3A.!!$R4	504
9	TraesCS5D01G125600	chr7A	238584487	238585872	1385	True	2121.000000	2121	94.317000	1	1384	1	chr7A.!!$R1	1383
10	TraesCS5D01G125600	chr5B	609881667	609891129	9462	False	1507.333333	1520	95.228333	703	1656	3	chr5B.!!$F1	953
11	TraesCS5D01G125600	chr5B	196471146	196472004	858	True	623.950000	1184	89.468500	1713	2537	2	chr5B.!!$R1	824
12	TraesCS5D01G125600	chr6B	395674906	395675858	952	True	1478.000000	1478	94.671000	703	1655	1	chr6B.!!$R1	952

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
329	558	3.688159	GTACGACGGTGTGGGGCT	61.688	66.667	0.0	0.0	0.0	5.19	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1963	10767	1.206371	CGTCCTCGTTTATTGGTCCCT	59.794	52.381	0.0	0.0	0.0	4.2	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
62	291	6.153340	AGCAGACATATGTTTTGTTAGGCAAT	59.847	34.615	10.30	0.00	36.89	3.56
168	397	7.801315	TGTTGCGTTCAGATTTAAACTATTCAC	59.199	33.333	0.00	0.00	0.00	3.18
329	558	3.688159	GTACGACGGTGTGGGGCT	61.688	66.667	0.00	0.00	0.00	5.19
1161	5648	0.758685	CCTCTCCATCTTCTCCGCCT	60.759	60.000	0.00	0.00	0.00	5.52
1306	5793	1.846124	AAGCGGGAAAGGAGGGACA	60.846	57.895	0.00	0.00	0.00	4.02
1308	5795	2.264794	CGGGAAAGGAGGGACACG	59.735	66.667	0.00	0.00	0.00	4.49
1432	10192	3.999297	GAGGAGGAGGCGAGGACGT	62.999	68.421	0.00	0.00	41.98	4.34
1555	10315	5.048713	CGTTGAAAAGACTAAAATGCCCTCT	60.049	40.000	0.00	0.00	0.00	3.69
1578	10338	2.171003	GGGGTGCAGAATTTACAAGCT	58.829	47.619	0.00	0.00	0.00	3.74
1627	10387	4.849329	GGGCGCGGTCGTGACTAG	62.849	72.222	8.83	0.00	38.14	2.57
1638	10398	4.260170	GGTCGTGACTAGGAGTCTAGAAA	58.740	47.826	8.04	0.00	45.27	2.52
1660	10420	7.761249	AGAAAGGTTTATATGTTCAATGCAAGC	59.239	33.333	0.00	0.00	0.00	4.01
1661	10421	6.780457	AGGTTTATATGTTCAATGCAAGCT	57.220	33.333	0.00	0.00	0.00	3.74
1662	10422	7.880160	AGGTTTATATGTTCAATGCAAGCTA	57.120	32.000	0.00	0.00	0.00	3.32
1663	10423	8.292444	AGGTTTATATGTTCAATGCAAGCTAA	57.708	30.769	0.00	0.00	0.00	3.09
1664	10424	8.748412	AGGTTTATATGTTCAATGCAAGCTAAA	58.252	29.630	0.00	0.00	0.00	1.85
1665	10425	8.807581	GGTTTATATGTTCAATGCAAGCTAAAC	58.192	33.333	0.00	0.00	0.00	2.01
1666	10426	9.573133	GTTTATATGTTCAATGCAAGCTAAACT	57.427	29.630	0.00	0.00	0.00	2.66
1667	10427	9.571810	TTTATATGTTCAATGCAAGCTAAACTG	57.428	29.630	0.00	0.00	0.00	3.16
1668	10428	5.710513	ATGTTCAATGCAAGCTAAACTGA	57.289	34.783	0.00	0.00	0.00	3.41
1669	10429	5.512753	TGTTCAATGCAAGCTAAACTGAA	57.487	34.783	0.00	0.00	0.00	3.02
1670	10430	5.522456	TGTTCAATGCAAGCTAAACTGAAG	58.478	37.500	0.00	0.00	0.00	3.02
1671	10431	4.164822	TCAATGCAAGCTAAACTGAAGC	57.835	40.909	0.00	0.00	40.40	3.86
1681	10441	5.223225	GCTAAACTGAAGCTAACATGTCC	57.777	43.478	0.00	0.00	37.01	4.02
1682	10442	4.095036	GCTAAACTGAAGCTAACATGTCCC	59.905	45.833	0.00	0.00	37.01	4.46
1683	10443	2.789409	ACTGAAGCTAACATGTCCCC	57.211	50.000	0.00	0.00	0.00	4.81
1684	10444	1.985159	ACTGAAGCTAACATGTCCCCA	59.015	47.619	0.00	0.00	0.00	4.96
1685	10445	2.375174	ACTGAAGCTAACATGTCCCCAA	59.625	45.455	0.00	0.00	0.00	4.12
1686	10446	3.012518	CTGAAGCTAACATGTCCCCAAG	58.987	50.000	0.00	0.00	0.00	3.61
1687	10447	2.375174	TGAAGCTAACATGTCCCCAAGT	59.625	45.455	0.00	0.00	0.00	3.16
1688	10448	3.181434	TGAAGCTAACATGTCCCCAAGTT	60.181	43.478	0.00	0.00	36.53	2.66
1689	10449	3.073274	AGCTAACATGTCCCCAAGTTC	57.927	47.619	0.00	0.00	34.56	3.01
1690	10450	2.375174	AGCTAACATGTCCCCAAGTTCA	59.625	45.455	0.00	0.00	34.56	3.18
1691	10451	2.488153	GCTAACATGTCCCCAAGTTCAC	59.512	50.000	0.00	0.00	34.56	3.18
1692	10452	1.995376	AACATGTCCCCAAGTTCACC	58.005	50.000	0.00	0.00	26.52	4.02
1693	10453	1.149101	ACATGTCCCCAAGTTCACCT	58.851	50.000	0.00	0.00	0.00	4.00
1694	10454	2.344592	ACATGTCCCCAAGTTCACCTA	58.655	47.619	0.00	0.00	0.00	3.08
1695	10455	2.305927	ACATGTCCCCAAGTTCACCTAG	59.694	50.000	0.00	0.00	0.00	3.02
1696	10456	2.409064	TGTCCCCAAGTTCACCTAGA	57.591	50.000	0.00	0.00	0.00	2.43
1697	10457	2.915869	TGTCCCCAAGTTCACCTAGAT	58.084	47.619	0.00	0.00	0.00	1.98
1698	10458	2.571653	TGTCCCCAAGTTCACCTAGATG	59.428	50.000	0.00	0.00	0.00	2.90
1699	10459	2.092914	GTCCCCAAGTTCACCTAGATGG	60.093	54.545	0.00	0.00	42.93	3.51
1700	10460	1.212935	CCCCAAGTTCACCTAGATGGG	59.787	57.143	1.59	1.59	41.76	4.00
1701	10461	2.196595	CCCAAGTTCACCTAGATGGGA	58.803	52.381	2.43	0.00	43.87	4.37
1702	10462	2.576191	CCCAAGTTCACCTAGATGGGAA	59.424	50.000	2.43	0.00	43.87	3.97
1703	10463	3.610911	CCAAGTTCACCTAGATGGGAAC	58.389	50.000	6.12	6.12	41.83	3.62
1704	10464	6.096544	CCCAAGTTCACCTAGATGGGAACA	62.097	50.000	14.26	0.00	43.87	3.18
1705	10465	7.834110	CCCAAGTTCACCTAGATGGGAACAG	62.834	52.000	14.26	7.76	43.87	3.16
1742	10502	2.673368	CGAAGTTCACCTAGATGGCAAC	59.327	50.000	3.32	0.00	40.22	4.17
1762	10522	7.028361	GGCAACAGAAGATATATACTACGTCC	58.972	42.308	0.00	0.00	0.00	4.79
1764	10524	7.360691	GCAACAGAAGATATATACTACGTCCGA	60.361	40.741	0.00	0.00	0.00	4.55
1776	10558	3.703052	ACTACGTCCGATCCTGGTTTATT	59.297	43.478	0.00	0.00	0.00	1.40
1785	10589	2.364190	TCCTGGTTTATTGGTCCCCTT	58.636	47.619	0.00	0.00	0.00	3.95
1787	10591	3.924072	TCCTGGTTTATTGGTCCCCTTTA	59.076	43.478	0.00	0.00	0.00	1.85
1798	10602	9.890915	TTATTGGTCCCCTTTATAATTTATGCT	57.109	29.630	0.00	0.00	0.00	3.79
1850	10654	7.856145	AAGTGTTAATTCATGCCAACAAAAA	57.144	28.000	0.00	0.00	33.04	1.94
1861	10665	8.489990	TCATGCCAACAAAAATTATACCATTG	57.510	30.769	0.00	0.00	0.00	2.82
1926	10730	6.641723	TGTGACATGCATGAACATTTTGTTAG	59.358	34.615	32.75	1.29	41.28	2.34
1931	10735	9.539825	ACATGCATGAACATTTTGTTAGTTAAA	57.460	25.926	32.75	0.00	41.28	1.52
1977	10781	8.463607	ACAAAATACAATAGGGACCAATAAACG	58.536	33.333	0.00	0.00	0.00	3.60
1984	10788	1.205417	GGGACCAATAAACGAGGACGA	59.795	52.381	0.00	0.00	42.66	4.20
2053	10857	1.363443	CGCAGTGCCACCAAAATGT	59.637	52.632	10.11	0.00	0.00	2.71
2130	10934	7.984050	TCTGCAACAAATATTGAAAACCTTTGA	59.016	29.630	0.00	0.00	35.37	2.69
2478	11282	1.003839	CCTACTGTTTGCCGGCTCA	60.004	57.895	29.70	21.45	0.00	4.26
2520	11324	3.362295	CTCTTCGATCAGCTTTCTCTCG	58.638	50.000	0.00	0.00	0.00	4.04

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
168	397	3.862124	GTGTGCGCACTAGGTCTG	58.138	61.111	37.59	0.00	42.13	3.51
222	451	3.868985	ACTCCCAACCCGCGTTGT	61.869	61.111	11.73	0.00	46.71	3.32
329	558	4.038522	GCTACACTGCTCCTGATCTTCATA	59.961	45.833	0.00	0.00	0.00	2.15
501	731	6.982724	CAGATATAGATTGCAGTCAAGACACA	59.017	38.462	12.16	0.00	35.37	3.72
692	922	5.876651	TCCAGTATCTGTAACATGCATCT	57.123	39.130	0.00	0.00	0.00	2.90
1161	5648	3.393970	CCTTCTCTCCCCGCAGCA	61.394	66.667	0.00	0.00	0.00	4.41
1295	5782	2.933834	CCCCCGTGTCCCTCCTTT	60.934	66.667	0.00	0.00	0.00	3.11
1407	10167	3.934962	GCCTCCTCCTCCATCCGC	61.935	72.222	0.00	0.00	0.00	5.54
1432	10192	3.006728	CCCCACGAACCCTAGCCA	61.007	66.667	0.00	0.00	0.00	4.75
1492	10252	1.869132	CTTTTCAGCAGGCCAAAAAGC	59.131	47.619	5.01	0.05	33.47	3.51
1578	10338	4.758688	CCTCATATAATCGCTATGCCACA	58.241	43.478	0.00	0.00	0.00	4.17
1627	10387	9.886132	TTGAACATATAAACCTTTCTAGACTCC	57.114	33.333	0.00	0.00	0.00	3.85
1638	10398	6.780457	AGCTTGCATTGAACATATAAACCT	57.220	33.333	0.00	0.00	0.00	3.50
1659	10419	4.095036	GGGACATGTTAGCTTCAGTTTAGC	59.905	45.833	0.00	0.00	38.93	3.09
1660	10420	4.636206	GGGGACATGTTAGCTTCAGTTTAG	59.364	45.833	0.00	0.00	0.00	1.85
1661	10421	4.042311	TGGGGACATGTTAGCTTCAGTTTA	59.958	41.667	0.00	0.00	33.40	2.01
1662	10422	3.181434	TGGGGACATGTTAGCTTCAGTTT	60.181	43.478	0.00	0.00	33.40	2.66
1663	10423	2.375174	TGGGGACATGTTAGCTTCAGTT	59.625	45.455	0.00	0.00	33.40	3.16
1664	10424	1.985159	TGGGGACATGTTAGCTTCAGT	59.015	47.619	0.00	0.00	33.40	3.41
1665	10425	2.787473	TGGGGACATGTTAGCTTCAG	57.213	50.000	0.00	0.00	33.40	3.02
1666	10426	2.375174	ACTTGGGGACATGTTAGCTTCA	59.625	45.455	0.00	0.00	45.53	3.02
1667	10427	3.073274	ACTTGGGGACATGTTAGCTTC	57.927	47.619	0.00	0.00	45.53	3.86
1675	10435	2.571653	TCTAGGTGAACTTGGGGACATG	59.428	50.000	0.00	0.00	42.32	3.21
1676	10436	2.915869	TCTAGGTGAACTTGGGGACAT	58.084	47.619	0.00	0.00	42.32	3.06
1677	10437	2.409064	TCTAGGTGAACTTGGGGACA	57.591	50.000	0.00	0.00	39.83	4.02
1678	10438	2.092914	CCATCTAGGTGAACTTGGGGAC	60.093	54.545	3.99	0.00	0.00	4.46
1679	10439	2.196595	CCATCTAGGTGAACTTGGGGA	58.803	52.381	3.99	0.00	0.00	4.81
1680	10440	1.212935	CCCATCTAGGTGAACTTGGGG	59.787	57.143	3.99	0.00	38.34	4.96
1681	10441	2.196595	TCCCATCTAGGTGAACTTGGG	58.803	52.381	3.99	0.00	41.62	4.12
1682	10442	3.009033	TGTTCCCATCTAGGTGAACTTGG	59.991	47.826	3.99	0.00	42.88	3.61
1683	10443	4.020218	TCTGTTCCCATCTAGGTGAACTTG	60.020	45.833	3.99	0.63	42.88	3.16
1684	10444	4.168101	TCTGTTCCCATCTAGGTGAACTT	58.832	43.478	3.99	0.00	42.88	2.66
1685	10445	3.791320	TCTGTTCCCATCTAGGTGAACT	58.209	45.455	3.99	0.00	42.88	3.01
1686	10446	4.508662	CTTCTGTTCCCATCTAGGTGAAC	58.491	47.826	3.99	2.50	42.82	3.18
1687	10447	3.055094	GCTTCTGTTCCCATCTAGGTGAA	60.055	47.826	3.99	0.00	34.66	3.18
1688	10448	2.501723	GCTTCTGTTCCCATCTAGGTGA	59.498	50.000	3.99	0.00	34.66	4.02
1689	10449	2.503356	AGCTTCTGTTCCCATCTAGGTG	59.497	50.000	0.00	0.00	34.66	4.00
1690	10450	2.839228	AGCTTCTGTTCCCATCTAGGT	58.161	47.619	0.00	0.00	34.66	3.08
1691	10451	4.219115	TCTAGCTTCTGTTCCCATCTAGG	58.781	47.826	0.00	0.00	37.03	3.02
1692	10452	7.178274	ACATATCTAGCTTCTGTTCCCATCTAG	59.822	40.741	0.00	0.00	0.00	2.43
1693	10453	7.013220	ACATATCTAGCTTCTGTTCCCATCTA	58.987	38.462	0.00	0.00	0.00	1.98
1694	10454	5.843421	ACATATCTAGCTTCTGTTCCCATCT	59.157	40.000	0.00	0.00	0.00	2.90
1695	10455	6.107901	ACATATCTAGCTTCTGTTCCCATC	57.892	41.667	0.00	0.00	0.00	3.51
1696	10456	5.012561	GGACATATCTAGCTTCTGTTCCCAT	59.987	44.000	0.00	0.00	0.00	4.00
1697	10457	4.345257	GGACATATCTAGCTTCTGTTCCCA	59.655	45.833	0.00	0.00	0.00	4.37
1698	10458	4.262678	GGGACATATCTAGCTTCTGTTCCC	60.263	50.000	0.00	0.00	30.50	3.97
1699	10459	4.559704	CGGGACATATCTAGCTTCTGTTCC	60.560	50.000	0.00	0.00	32.97	3.62
1700	10460	4.278669	TCGGGACATATCTAGCTTCTGTTC	59.721	45.833	0.00	0.00	0.00	3.18
1701	10461	4.215908	TCGGGACATATCTAGCTTCTGTT	58.784	43.478	0.00	0.00	0.00	3.16
1702	10462	3.833732	TCGGGACATATCTAGCTTCTGT	58.166	45.455	0.00	0.00	0.00	3.41
1703	10463	4.279671	ACTTCGGGACATATCTAGCTTCTG	59.720	45.833	0.00	0.00	0.00	3.02
1704	10464	4.475345	ACTTCGGGACATATCTAGCTTCT	58.525	43.478	0.00	0.00	0.00	2.85
1705	10465	4.857509	ACTTCGGGACATATCTAGCTTC	57.142	45.455	0.00	0.00	0.00	3.86
1706	10466	4.649674	TGAACTTCGGGACATATCTAGCTT	59.350	41.667	0.00	0.00	0.00	3.74
1707	10467	4.038162	GTGAACTTCGGGACATATCTAGCT	59.962	45.833	0.00	0.00	0.00	3.32
1708	10468	4.299978	GTGAACTTCGGGACATATCTAGC	58.700	47.826	0.00	0.00	0.00	3.42
1709	10469	4.585162	AGGTGAACTTCGGGACATATCTAG	59.415	45.833	0.00	0.00	0.00	2.43
1710	10470	4.543689	AGGTGAACTTCGGGACATATCTA	58.456	43.478	0.00	0.00	0.00	1.98
1711	10471	3.375699	AGGTGAACTTCGGGACATATCT	58.624	45.455	0.00	0.00	0.00	1.98
1758	10518	2.210116	CCAATAAACCAGGATCGGACG	58.790	52.381	0.00	0.00	0.00	4.79
1762	10522	2.572290	GGGACCAATAAACCAGGATCG	58.428	52.381	0.00	0.00	0.00	3.69
1834	10638	9.683870	AATGGTATAATTTTTGTTGGCATGAAT	57.316	25.926	0.00	0.00	0.00	2.57
1836	10640	7.551974	CCAATGGTATAATTTTTGTTGGCATGA	59.448	33.333	0.00	0.00	0.00	3.07
1901	10705	4.946445	ACAAAATGTTCATGCATGTCACA	58.054	34.783	26.19	26.19	0.00	3.58
1949	10753	8.887264	TTATTGGTCCCTATTGTATTTTGTGT	57.113	30.769	0.00	0.00	0.00	3.72
1963	10767	1.206371	CGTCCTCGTTTATTGGTCCCT	59.794	52.381	0.00	0.00	0.00	4.20
1966	10770	2.928116	CCTTCGTCCTCGTTTATTGGTC	59.072	50.000	0.00	0.00	38.33	4.02
1977	10781	6.690194	TTACAATCTACTACCTTCGTCCTC	57.310	41.667	0.00	0.00	0.00	3.71
1984	10788	7.361457	TGCAGCTATTACAATCTACTACCTT	57.639	36.000	0.00	0.00	0.00	3.50
2053	10857	3.106242	AGCTGTAACACGAACATGTGA	57.894	42.857	0.00	0.00	42.55	3.58
2130	10934	6.704056	AGTATTAGGGGCATTATTACTGCT	57.296	37.500	6.05	0.00	39.60	4.24
2295	11099	6.155221	ACTGTTGAGAGATAAAGCCATGTCTA	59.845	38.462	0.00	0.00	29.23	2.59

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.