Multiple sequence alignment - TraesCS5D01G124300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G124300 chr5D 100.000 9880 0 0 1 9880 188344315 188334436 0.000000e+00 18246.0
1 TraesCS5D01G124300 chr5D 91.208 853 54 16 2 849 383625219 383626055 0.000000e+00 1140.0
2 TraesCS5D01G124300 chr5D 88.243 808 71 20 2 802 464293832 464293042 0.000000e+00 944.0
3 TraesCS5D01G124300 chr5D 98.370 184 3 0 3947 4130 277243280 277243097 3.440000e-84 324.0
4 TraesCS5D01G124300 chr5D 100.000 46 0 0 1082 1127 188343195 188343150 1.770000e-12 86.1
5 TraesCS5D01G124300 chr5D 100.000 46 0 0 1121 1166 188343234 188343189 1.770000e-12 86.1
6 TraesCS5D01G124300 chr5D 100.000 39 0 0 8644 8682 188335633 188335595 1.380000e-08 73.1
7 TraesCS5D01G124300 chr5D 100.000 39 0 0 8683 8721 188335672 188335634 1.380000e-08 73.1
8 TraesCS5D01G124300 chr5A 97.046 5450 115 14 4131 9558 242851165 242856590 0.000000e+00 9130.0
9 TraesCS5D01G124300 chr5A 94.854 1263 29 9 2691 3951 242849948 242851176 0.000000e+00 1940.0
10 TraesCS5D01G124300 chr5A 97.171 813 20 1 1121 1930 242843493 242844305 0.000000e+00 1371.0
11 TraesCS5D01G124300 chr5A 92.583 755 11 14 1926 2656 242849217 242849950 0.000000e+00 1042.0
12 TraesCS5D01G124300 chr5A 86.044 867 88 26 2 856 605420811 605419966 0.000000e+00 900.0
13 TraesCS5D01G124300 chr5A 96.914 324 10 0 9557 9880 242856688 242857011 2.430000e-150 544.0
14 TraesCS5D01G124300 chr5A 95.668 277 8 2 850 1125 242843263 242843536 9.110000e-120 442.0
15 TraesCS5D01G124300 chr5A 98.895 181 2 0 3948 4128 366234994 366234814 3.440000e-84 324.0
16 TraesCS5D01G124300 chr5A 95.161 62 3 0 9557 9618 242856619 242856680 2.270000e-16 99.0
17 TraesCS5D01G124300 chr5A 100.000 39 0 0 8683 8721 242855686 242855724 1.380000e-08 73.1
18 TraesCS5D01G124300 chr5A 100.000 39 0 0 8644 8682 242855725 242855763 1.380000e-08 73.1
19 TraesCS5D01G124300 chr5B 96.905 3457 79 8 5990 9427 153896926 153893479 0.000000e+00 5766.0
20 TraesCS5D01G124300 chr5B 97.341 1655 35 5 4131 5782 153899584 153897936 0.000000e+00 2804.0
21 TraesCS5D01G124300 chr5B 94.694 1470 39 10 1124 2563 153903115 153901655 0.000000e+00 2246.0
22 TraesCS5D01G124300 chr5B 96.976 496 10 3 3457 3951 153900064 153899573 0.000000e+00 828.0
23 TraesCS5D01G124300 chr5B 93.594 281 11 3 850 1127 153903349 153903073 7.140000e-111 412.0
24 TraesCS5D01G124300 chr5B 89.965 289 9 6 9571 9841 153893467 153893181 1.220000e-93 355.0
25 TraesCS5D01G124300 chr5B 97.436 156 4 0 5842 5997 153897936 153897781 5.880000e-67 267.0
26 TraesCS5D01G124300 chr5B 97.674 129 3 0 2558 2686 153901376 153901248 1.290000e-53 222.0
27 TraesCS5D01G124300 chr5B 78.462 130 22 5 4805 4933 92236670 92236546 8.230000e-11 80.5
28 TraesCS5D01G124300 chr5B 100.000 39 0 0 8644 8682 153894225 153894187 1.380000e-08 73.1
29 TraesCS5D01G124300 chr5B 100.000 39 0 0 8683 8721 153894264 153894226 1.380000e-08 73.1
30 TraesCS5D01G124300 chr4A 88.435 856 81 12 2 849 348486030 348485185 0.000000e+00 1016.0
31 TraesCS5D01G124300 chr4A 86.433 855 90 21 2 846 163307149 163307987 0.000000e+00 913.0
32 TraesCS5D01G124300 chr2D 87.734 856 80 19 2 849 38172962 38173800 0.000000e+00 976.0
33 TraesCS5D01G124300 chr2D 98.361 183 3 0 3948 4130 180879594 180879412 1.240000e-83 322.0
34 TraesCS5D01G124300 chr7D 87.953 855 66 23 2 851 122820155 122820977 0.000000e+00 974.0
35 TraesCS5D01G124300 chr1D 86.263 859 86 23 2 849 110907807 110906970 0.000000e+00 904.0
36 TraesCS5D01G124300 chr7A 86.047 860 89 24 2 849 206773687 206774527 0.000000e+00 894.0
37 TraesCS5D01G124300 chr2B 85.397 856 100 19 2 849 366597410 366598248 0.000000e+00 865.0
38 TraesCS5D01G124300 chr1A 85.116 860 93 29 2 848 278229224 278230061 0.000000e+00 846.0
39 TraesCS5D01G124300 chr4D 88.440 718 54 19 2 717 179896725 179896035 0.000000e+00 839.0
40 TraesCS5D01G124300 chrUn 100.000 384 0 0 7062 7445 480923497 480923880 0.000000e+00 710.0
41 TraesCS5D01G124300 chrUn 85.846 325 31 12 2 326 89953900 89953591 2.060000e-86 331.0
42 TraesCS5D01G124300 chr6D 90.129 466 29 14 3 468 426968352 426968800 3.070000e-164 590.0
43 TraesCS5D01G124300 chr6D 86.799 303 23 14 6 308 72353241 72352956 1.240000e-83 322.0
44 TraesCS5D01G124300 chr3D 98.370 184 3 0 3947 4130 466287326 466287143 3.440000e-84 324.0
45 TraesCS5D01G124300 chr3D 90.404 198 12 3 5017 5209 327737098 327737293 4.580000e-63 254.0
46 TraesCS5D01G124300 chr1B 98.370 184 3 0 3947 4130 609414918 609414735 3.440000e-84 324.0
47 TraesCS5D01G124300 chr3A 98.889 180 2 0 3951 4130 308688712 308688533 1.240000e-83 322.0
48 TraesCS5D01G124300 chr3A 89.950 199 13 3 5017 5210 441860411 441860607 5.920000e-62 250.0
49 TraesCS5D01G124300 chr6B 96.875 192 4 1 3948 4139 597080535 597080724 4.450000e-83 320.0
50 TraesCS5D01G124300 chr3B 94.975 199 8 2 3948 4145 544788461 544788264 2.680000e-80 311.0
51 TraesCS5D01G124300 chr3B 89.552 201 12 4 5017 5210 421908666 421908468 7.660000e-61 246.0
52 TraesCS5D01G124300 chr2A 93.720 207 8 4 3948 4153 90220739 90220537 1.250000e-78 305.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G124300 chr5D 188334436 188344315 9879 True 18246.000000 18246 100.000000 1 9880 1 chr5D.!!$R1 9879
1 TraesCS5D01G124300 chr5D 383625219 383626055 836 False 1140.000000 1140 91.208000 2 849 1 chr5D.!!$F1 847
2 TraesCS5D01G124300 chr5D 464293042 464293832 790 True 944.000000 944 88.243000 2 802 1 chr5D.!!$R3 800
3 TraesCS5D01G124300 chr5A 242849217 242857011 7794 False 1843.028571 9130 96.651143 1926 9880 7 chr5A.!!$F2 7954
4 TraesCS5D01G124300 chr5A 242843263 242844305 1042 False 906.500000 1371 96.419500 850 1930 2 chr5A.!!$F1 1080
5 TraesCS5D01G124300 chr5A 605419966 605420811 845 True 900.000000 900 86.044000 2 856 1 chr5A.!!$R2 854
6 TraesCS5D01G124300 chr5B 153893181 153903349 10168 True 1304.620000 5766 96.458500 850 9841 10 chr5B.!!$R2 8991
7 TraesCS5D01G124300 chr4A 348485185 348486030 845 True 1016.000000 1016 88.435000 2 849 1 chr4A.!!$R1 847
8 TraesCS5D01G124300 chr4A 163307149 163307987 838 False 913.000000 913 86.433000 2 846 1 chr4A.!!$F1 844
9 TraesCS5D01G124300 chr2D 38172962 38173800 838 False 976.000000 976 87.734000 2 849 1 chr2D.!!$F1 847
10 TraesCS5D01G124300 chr7D 122820155 122820977 822 False 974.000000 974 87.953000 2 851 1 chr7D.!!$F1 849
11 TraesCS5D01G124300 chr1D 110906970 110907807 837 True 904.000000 904 86.263000 2 849 1 chr1D.!!$R1 847
12 TraesCS5D01G124300 chr7A 206773687 206774527 840 False 894.000000 894 86.047000 2 849 1 chr7A.!!$F1 847
13 TraesCS5D01G124300 chr2B 366597410 366598248 838 False 865.000000 865 85.397000 2 849 1 chr2B.!!$F1 847
14 TraesCS5D01G124300 chr1A 278229224 278230061 837 False 846.000000 846 85.116000 2 848 1 chr1A.!!$F1 846
15 TraesCS5D01G124300 chr4D 179896035 179896725 690 True 839.000000 839 88.440000 2 717 1 chr4D.!!$R1 715

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
804 829 0.753867 TGGACGGCGATAAAGGCATA 59.246 50.000 16.62 0.00 36.37 3.14 F
1986 2019 0.462047 ACTATGCTACCACGGCAAGC 60.462 55.000 4.46 4.46 43.14 4.01 F
2194 2229 0.602638 CACGGCAGCACAACTAAGGA 60.603 55.000 0.00 0.00 0.00 3.36 F
4009 4766 0.250038 CTATGGACAGGGATGCGTGG 60.250 60.000 11.72 0.00 0.00 4.94 F
4034 4791 0.179037 TGCTATCCATGTGCCAGAGC 60.179 55.000 0.00 0.00 40.48 4.09 F
4053 4810 0.179100 CCATGAGTTGGTCGCGAGAT 60.179 55.000 10.24 0.00 45.19 2.75 F
4840 5598 0.183731 AATCTCCCCGGCCAGATTTC 59.816 55.000 16.63 0.00 36.15 2.17 F
4933 5691 1.003580 TCTGGCAAGGAATCGAGCTTT 59.996 47.619 0.00 0.00 0.00 3.51 F
6556 8184 0.880278 TGCGTCTGGCTGAAGTTGAC 60.880 55.000 8.85 0.00 44.05 3.18 F
6850 8478 0.955919 CAAACGGTTCTGCCCTCCTC 60.956 60.000 0.00 0.00 0.00 3.71 F
8240 9873 1.468914 GAAGAATCAAACACGGGGAGC 59.531 52.381 0.00 0.00 0.00 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2687 3030 1.623811 ACCCACAGTTCTTGATAGCGT 59.376 47.619 0.00 0.00 0.00 5.07 R
3130 3473 0.909623 TTAGGCCCAACTACTCCAGC 59.090 55.000 0.00 0.00 0.00 4.85 R
4015 4772 0.179037 GCTCTGGCACATGGATAGCA 60.179 55.000 0.00 0.00 38.20 3.49 R
5071 5830 2.158827 TCTCTTGTTGGCTGCAGTACAA 60.159 45.455 16.64 19.80 0.00 2.41 R
5670 6431 3.431346 GGGAGGAGTTAACCGGTGATAAC 60.431 52.174 17.79 17.79 34.73 1.89 R
5895 6657 9.903682 ATTATTTATGTAGAATCATGCTTGTGC 57.096 29.630 0.00 0.00 40.20 4.57 R
6556 8184 2.290916 ACAGATACGTAGAGTGCCATCG 59.709 50.000 0.08 0.00 0.00 3.84 R
6880 8508 2.158127 TGGTCCTACCTTGGGTGAAGTA 60.158 50.000 0.00 0.00 39.58 2.24 R
7508 9141 0.033366 GGAACCAAAAATGGCACGCT 59.967 50.000 0.00 0.00 0.00 5.07 R
8459 10104 0.687354 AGGGGCTAATGGACATAGCG 59.313 55.000 0.00 0.00 37.69 4.26 R
9381 11031 2.418628 ACGAACAATACAATTGGCGGAG 59.581 45.455 10.83 0.00 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
138 140 4.082523 CCGGCGTGTGGACAGGAT 62.083 66.667 6.01 0.00 33.92 3.24
163 165 2.755469 AATCCACACCGGCATGGC 60.755 61.111 17.97 9.69 43.94 4.40
328 331 4.372656 AGGAATCTCGAGCGGAAATTAAG 58.627 43.478 7.81 0.00 0.00 1.85
356 363 2.614969 AGGGGGAATGCAGGCAGA 60.615 61.111 0.00 0.00 0.00 4.26
762 787 2.486203 ACGCAAAATCAGCCATTTCGTA 59.514 40.909 4.54 0.00 34.70 3.43
767 792 5.576384 GCAAAATCAGCCATTTCGTATCAAA 59.424 36.000 0.00 0.00 33.16 2.69
796 821 3.255725 CAAAAGTAACTGGACGGCGATA 58.744 45.455 16.62 0.00 0.00 2.92
804 829 0.753867 TGGACGGCGATAAAGGCATA 59.246 50.000 16.62 0.00 36.37 3.14
909 939 1.663911 TGGCAGCCTTAAACCCTCTA 58.336 50.000 14.15 0.00 0.00 2.43
920 950 5.429130 CTTAAACCCTCTAAGCCCTTGTAG 58.571 45.833 0.00 0.00 0.00 2.74
921 951 2.644060 ACCCTCTAAGCCCTTGTAGT 57.356 50.000 0.00 0.00 0.00 2.73
922 952 3.771071 ACCCTCTAAGCCCTTGTAGTA 57.229 47.619 0.00 0.00 0.00 1.82
1128 1158 2.512515 GCTCATCCAGCGTCACCC 60.513 66.667 0.00 0.00 38.76 4.61
1129 1159 3.023949 GCTCATCCAGCGTCACCCT 62.024 63.158 0.00 0.00 38.76 4.34
1130 1160 1.676678 GCTCATCCAGCGTCACCCTA 61.677 60.000 0.00 0.00 38.76 3.53
1131 1161 1.043816 CTCATCCAGCGTCACCCTAT 58.956 55.000 0.00 0.00 0.00 2.57
1132 1162 0.752658 TCATCCAGCGTCACCCTATG 59.247 55.000 0.00 0.00 0.00 2.23
1133 1163 0.882042 CATCCAGCGTCACCCTATGC 60.882 60.000 0.00 0.00 0.00 3.14
1134 1164 2.369257 ATCCAGCGTCACCCTATGCG 62.369 60.000 0.00 0.00 36.47 4.73
1155 1185 4.172512 CCGGCTGCTCCTGCTCAT 62.173 66.667 0.00 0.00 40.48 2.90
1156 1186 2.588314 CGGCTGCTCCTGCTCATC 60.588 66.667 0.00 0.00 40.48 2.92
1157 1187 2.203181 GGCTGCTCCTGCTCATCC 60.203 66.667 0.00 0.00 40.48 3.51
1158 1188 2.588439 GCTGCTCCTGCTCATCCA 59.412 61.111 0.00 0.00 40.48 3.41
1159 1189 1.524165 GCTGCTCCTGCTCATCCAG 60.524 63.158 0.00 0.00 40.48 3.86
1309 1339 3.362797 TCGACGCTCCTTGCTCGT 61.363 61.111 0.00 0.00 40.50 4.18
1599 1629 4.716784 TGCTAGTTCAATCTACCCTGTGAT 59.283 41.667 0.00 0.00 0.00 3.06
1986 2019 0.462047 ACTATGCTACCACGGCAAGC 60.462 55.000 4.46 4.46 43.14 4.01
1987 2020 1.153249 TATGCTACCACGGCAAGCC 60.153 57.895 0.00 0.00 43.14 4.35
2095 2128 9.451002 AAATCCATATTTGATCTATCTGCAGAG 57.549 33.333 22.96 9.67 33.97 3.35
2098 2132 8.654094 TCCATATTTGATCTATCTGCAGAGAAA 58.346 33.333 22.96 4.30 0.00 2.52
2194 2229 0.602638 CACGGCAGCACAACTAAGGA 60.603 55.000 0.00 0.00 0.00 3.36
2195 2230 0.602905 ACGGCAGCACAACTAAGGAC 60.603 55.000 0.00 0.00 0.00 3.85
2196 2231 0.602638 CGGCAGCACAACTAAGGACA 60.603 55.000 0.00 0.00 0.00 4.02
2616 2959 7.605309 TGTTCTGCAAGCTAAGGATATGATATG 59.395 37.037 0.00 0.00 0.00 1.78
2686 3029 7.875971 ACATGAGGAAGAATGTTTCTGTTAAC 58.124 34.615 0.00 0.00 40.59 2.01
2687 3030 7.502226 ACATGAGGAAGAATGTTTCTGTTAACA 59.498 33.333 8.28 8.28 40.59 2.41
2688 3031 7.259290 TGAGGAAGAATGTTTCTGTTAACAC 57.741 36.000 3.59 0.00 40.53 3.32
2689 3032 6.018262 TGAGGAAGAATGTTTCTGTTAACACG 60.018 38.462 3.59 1.56 40.53 4.49
2690 3033 4.909880 GGAAGAATGTTTCTGTTAACACGC 59.090 41.667 3.59 0.00 40.53 5.34
2691 3034 5.277828 GGAAGAATGTTTCTGTTAACACGCT 60.278 40.000 3.59 0.00 40.53 5.07
2692 3035 6.073440 GGAAGAATGTTTCTGTTAACACGCTA 60.073 38.462 3.59 0.00 40.53 4.26
2716 3059 6.636454 TCAAGAACTGTGGGTTATCCTTAT 57.364 37.500 0.00 0.00 38.41 1.73
2762 3105 3.561725 GGATTTACTGGAATTCTCAGCGG 59.438 47.826 18.38 5.56 35.78 5.52
2770 3113 2.622436 GAATTCTCAGCGGTAAGTGCT 58.378 47.619 0.00 0.00 45.31 4.40
2771 3114 2.770164 ATTCTCAGCGGTAAGTGCTT 57.230 45.000 0.00 0.00 41.72 3.91
2772 3115 3.887621 ATTCTCAGCGGTAAGTGCTTA 57.112 42.857 0.00 0.00 41.72 3.09
2773 3116 3.887621 TTCTCAGCGGTAAGTGCTTAT 57.112 42.857 0.00 0.00 41.72 1.73
2774 3117 4.994907 TTCTCAGCGGTAAGTGCTTATA 57.005 40.909 0.00 0.00 41.72 0.98
2775 3118 5.531122 TTCTCAGCGGTAAGTGCTTATAT 57.469 39.130 0.00 0.00 41.72 0.86
2777 3120 6.644248 TCTCAGCGGTAAGTGCTTATATAA 57.356 37.500 0.00 0.00 41.72 0.98
2778 3121 7.228314 TCTCAGCGGTAAGTGCTTATATAAT 57.772 36.000 0.00 0.00 41.72 1.28
2779 3122 8.344446 TCTCAGCGGTAAGTGCTTATATAATA 57.656 34.615 0.00 0.00 41.72 0.98
2780 3123 8.967918 TCTCAGCGGTAAGTGCTTATATAATAT 58.032 33.333 0.00 0.00 41.72 1.28
2847 3190 4.119862 CCAATACCTGGTATCAAGACGTG 58.880 47.826 19.19 11.65 40.78 4.49
2873 3216 6.987403 AGGTTCCCTTTATTTGCTTTGTAA 57.013 33.333 0.00 0.00 0.00 2.41
2874 3217 7.368198 AGGTTCCCTTTATTTGCTTTGTAAA 57.632 32.000 0.00 0.00 0.00 2.01
2915 3258 1.067915 ACGCGTGCATAATTTTGGCTT 60.068 42.857 12.93 0.00 0.00 4.35
2932 3275 3.069586 TGGCTTCTTATCTGTATGGTCCG 59.930 47.826 0.00 0.00 0.00 4.79
2960 3303 4.438200 CCATAGTTGCCAATGTTTCGTACC 60.438 45.833 0.00 0.00 0.00 3.34
3036 3379 9.760926 ATACAGCAGAGAATATATCCTTCTGTA 57.239 33.333 16.47 16.47 38.30 2.74
3120 3463 8.737175 AGTTCACGAGACAGTTACTTAATATCA 58.263 33.333 0.00 0.00 0.00 2.15
3130 3473 8.361139 ACAGTTACTTAATATCATTCCTCGAGG 58.639 37.037 26.32 26.32 0.00 4.63
3186 3529 5.538053 TGCATTTTGTACAAAGGGAGATCAA 59.462 36.000 19.72 3.81 0.00 2.57
3272 3615 7.120579 TCCAGTTATGTTTATCACATGAACACC 59.879 37.037 0.00 0.00 46.37 4.16
3522 4278 4.528076 TGTAGCCCTAACAGATCTCTCT 57.472 45.455 0.00 0.00 0.00 3.10
3942 4699 7.360361 CCCAATAGGTTTTTATATCTTGACGC 58.640 38.462 0.00 0.00 0.00 5.19
3943 4700 7.012894 CCCAATAGGTTTTTATATCTTGACGCA 59.987 37.037 0.00 0.00 0.00 5.24
3944 4701 8.567948 CCAATAGGTTTTTATATCTTGACGCAT 58.432 33.333 0.00 0.00 0.00 4.73
3945 4702 9.950680 CAATAGGTTTTTATATCTTGACGCATT 57.049 29.630 0.00 0.00 0.00 3.56
3947 4704 9.950680 ATAGGTTTTTATATCTTGACGCATTTG 57.049 29.630 0.00 0.00 0.00 2.32
3948 4705 7.826690 AGGTTTTTATATCTTGACGCATTTGT 58.173 30.769 0.00 0.00 0.00 2.83
3949 4706 8.303876 AGGTTTTTATATCTTGACGCATTTGTT 58.696 29.630 0.00 0.00 0.00 2.83
3950 4707 9.562583 GGTTTTTATATCTTGACGCATTTGTTA 57.437 29.630 0.00 0.00 0.00 2.41
3955 4712 9.594478 TTATATCTTGACGCATTTGTTAAGAGA 57.406 29.630 7.11 3.45 44.45 3.10
3956 4713 5.845985 TCTTGACGCATTTGTTAAGAGAG 57.154 39.130 0.00 0.00 38.91 3.20
3957 4714 5.538118 TCTTGACGCATTTGTTAAGAGAGA 58.462 37.500 0.00 0.00 38.91 3.10
3958 4715 5.405571 TCTTGACGCATTTGTTAAGAGAGAC 59.594 40.000 0.00 0.00 38.91 3.36
3959 4716 3.994392 TGACGCATTTGTTAAGAGAGACC 59.006 43.478 0.00 0.00 0.00 3.85
3960 4717 4.246458 GACGCATTTGTTAAGAGAGACCT 58.754 43.478 0.00 0.00 0.00 3.85
3961 4718 3.997021 ACGCATTTGTTAAGAGAGACCTG 59.003 43.478 0.00 0.00 0.00 4.00
3962 4719 4.245660 CGCATTTGTTAAGAGAGACCTGA 58.754 43.478 0.00 0.00 0.00 3.86
3963 4720 4.690748 CGCATTTGTTAAGAGAGACCTGAA 59.309 41.667 0.00 0.00 0.00 3.02
3964 4721 5.163913 CGCATTTGTTAAGAGAGACCTGAAG 60.164 44.000 0.00 0.00 0.00 3.02
3965 4722 5.123027 GCATTTGTTAAGAGAGACCTGAAGG 59.877 44.000 0.00 0.00 42.17 3.46
3966 4723 6.467677 CATTTGTTAAGAGAGACCTGAAGGA 58.532 40.000 2.62 0.00 38.94 3.36
3967 4724 6.688073 TTTGTTAAGAGAGACCTGAAGGAT 57.312 37.500 2.62 0.00 38.94 3.24
3968 4725 6.688073 TTGTTAAGAGAGACCTGAAGGATT 57.312 37.500 2.62 0.00 38.94 3.01
3969 4726 6.042638 TGTTAAGAGAGACCTGAAGGATTG 57.957 41.667 2.62 0.00 38.94 2.67
3970 4727 5.046304 TGTTAAGAGAGACCTGAAGGATTGG 60.046 44.000 2.62 0.00 38.94 3.16
3971 4728 3.481559 AGAGAGACCTGAAGGATTGGA 57.518 47.619 2.62 0.00 38.94 3.53
3972 4729 3.373830 AGAGAGACCTGAAGGATTGGAG 58.626 50.000 2.62 0.00 38.94 3.86
3973 4730 3.103742 GAGAGACCTGAAGGATTGGAGT 58.896 50.000 2.62 0.00 38.94 3.85
3974 4731 4.017037 AGAGAGACCTGAAGGATTGGAGTA 60.017 45.833 2.62 0.00 38.94 2.59
3975 4732 4.889780 AGAGACCTGAAGGATTGGAGTAT 58.110 43.478 2.62 0.00 38.94 2.12
3976 4733 4.898861 AGAGACCTGAAGGATTGGAGTATC 59.101 45.833 2.62 0.00 38.94 2.24
3977 4734 4.624913 AGACCTGAAGGATTGGAGTATCA 58.375 43.478 2.62 0.00 38.94 2.15
3978 4735 4.407296 AGACCTGAAGGATTGGAGTATCAC 59.593 45.833 2.62 0.00 38.94 3.06
3979 4736 3.456277 ACCTGAAGGATTGGAGTATCACC 59.544 47.826 2.62 0.00 38.94 4.02
3980 4737 3.455910 CCTGAAGGATTGGAGTATCACCA 59.544 47.826 0.00 0.00 34.60 4.17
3981 4738 6.527086 ACCTGAAGGATTGGAGTATCACCAA 61.527 44.000 2.62 0.00 43.61 3.67
3982 4739 7.950045 ACCTGAAGGATTGGAGTATCACCAAA 61.950 42.308 2.62 0.00 43.17 3.28
3983 4740 9.647145 ACCTGAAGGATTGGAGTATCACCAAAG 62.647 44.444 2.62 0.00 43.17 2.77
3990 4747 5.086104 TGGAGTATCACCAAAGAACTAGC 57.914 43.478 0.00 0.00 36.25 3.42
3991 4748 4.777896 TGGAGTATCACCAAAGAACTAGCT 59.222 41.667 0.00 0.00 36.25 3.32
3992 4749 5.955959 TGGAGTATCACCAAAGAACTAGCTA 59.044 40.000 0.00 0.00 36.25 3.32
3993 4750 6.611642 TGGAGTATCACCAAAGAACTAGCTAT 59.388 38.462 0.00 0.00 36.25 2.97
3994 4751 6.926272 GGAGTATCACCAAAGAACTAGCTATG 59.074 42.308 0.00 0.00 36.25 2.23
3995 4752 6.821388 AGTATCACCAAAGAACTAGCTATGG 58.179 40.000 7.17 7.17 0.00 2.74
3996 4753 5.957771 ATCACCAAAGAACTAGCTATGGA 57.042 39.130 14.35 0.00 0.00 3.41
3997 4754 5.086104 TCACCAAAGAACTAGCTATGGAC 57.914 43.478 14.35 0.00 0.00 4.02
3998 4755 4.530553 TCACCAAAGAACTAGCTATGGACA 59.469 41.667 14.35 0.00 0.00 4.02
3999 4756 4.872691 CACCAAAGAACTAGCTATGGACAG 59.127 45.833 14.35 0.00 0.00 3.51
4000 4757 4.080863 ACCAAAGAACTAGCTATGGACAGG 60.081 45.833 14.35 5.47 0.00 4.00
4001 4758 4.446371 CAAAGAACTAGCTATGGACAGGG 58.554 47.826 0.00 0.00 0.00 4.45
4002 4759 3.689872 AGAACTAGCTATGGACAGGGA 57.310 47.619 0.00 0.00 0.00 4.20
4003 4760 4.206244 AGAACTAGCTATGGACAGGGAT 57.794 45.455 0.00 0.00 0.00 3.85
4004 4761 3.900601 AGAACTAGCTATGGACAGGGATG 59.099 47.826 0.00 0.00 0.00 3.51
4005 4762 1.974236 ACTAGCTATGGACAGGGATGC 59.026 52.381 0.00 0.00 0.00 3.91
4006 4763 0.969149 TAGCTATGGACAGGGATGCG 59.031 55.000 0.00 0.00 0.00 4.73
4007 4764 1.050988 AGCTATGGACAGGGATGCGT 61.051 55.000 0.00 0.00 0.00 5.24
4008 4765 0.882042 GCTATGGACAGGGATGCGTG 60.882 60.000 5.28 5.28 0.00 5.34
4009 4766 0.250038 CTATGGACAGGGATGCGTGG 60.250 60.000 11.72 0.00 0.00 4.94
4010 4767 0.689412 TATGGACAGGGATGCGTGGA 60.689 55.000 11.72 0.00 0.00 4.02
4011 4768 1.561769 ATGGACAGGGATGCGTGGAA 61.562 55.000 11.72 0.00 0.00 3.53
4012 4769 1.450312 GGACAGGGATGCGTGGAAG 60.450 63.158 11.72 0.00 0.00 3.46
4013 4770 2.045926 ACAGGGATGCGTGGAAGC 60.046 61.111 11.72 0.00 37.71 3.86
4014 4771 2.270205 CAGGGATGCGTGGAAGCT 59.730 61.111 0.00 0.00 38.13 3.74
4015 4772 1.377725 CAGGGATGCGTGGAAGCTT 60.378 57.895 0.00 0.00 38.13 3.74
4016 4773 1.377725 AGGGATGCGTGGAAGCTTG 60.378 57.895 2.10 0.00 38.13 4.01
4017 4774 2.486966 GGATGCGTGGAAGCTTGC 59.513 61.111 11.58 11.58 38.13 4.01
4018 4775 2.042831 GGATGCGTGGAAGCTTGCT 61.043 57.895 19.34 0.00 38.13 3.91
4019 4776 0.744414 GGATGCGTGGAAGCTTGCTA 60.744 55.000 19.34 2.82 38.13 3.49
4020 4777 1.303309 GATGCGTGGAAGCTTGCTAT 58.697 50.000 19.34 8.18 38.13 2.97
4021 4778 1.262683 GATGCGTGGAAGCTTGCTATC 59.737 52.381 19.34 12.79 38.13 2.08
4022 4779 0.744414 TGCGTGGAAGCTTGCTATCC 60.744 55.000 19.34 6.99 38.13 2.59
4023 4780 0.744414 GCGTGGAAGCTTGCTATCCA 60.744 55.000 19.34 9.80 40.84 3.41
4024 4781 1.959042 CGTGGAAGCTTGCTATCCAT 58.041 50.000 19.34 0.00 44.55 3.41
4025 4782 1.600957 CGTGGAAGCTTGCTATCCATG 59.399 52.381 19.34 20.51 44.55 3.66
4026 4783 2.648059 GTGGAAGCTTGCTATCCATGT 58.352 47.619 19.34 0.00 44.55 3.21
4027 4784 2.357009 GTGGAAGCTTGCTATCCATGTG 59.643 50.000 19.34 0.00 44.55 3.21
4028 4785 1.336125 GGAAGCTTGCTATCCATGTGC 59.664 52.381 11.19 0.00 33.30 4.57
4029 4786 1.336125 GAAGCTTGCTATCCATGTGCC 59.664 52.381 2.10 0.00 0.00 5.01
4030 4787 0.256752 AGCTTGCTATCCATGTGCCA 59.743 50.000 0.00 0.00 0.00 4.92
4031 4788 0.666913 GCTTGCTATCCATGTGCCAG 59.333 55.000 0.00 0.00 0.00 4.85
4032 4789 1.748244 GCTTGCTATCCATGTGCCAGA 60.748 52.381 0.00 0.00 0.00 3.86
4033 4790 2.219458 CTTGCTATCCATGTGCCAGAG 58.781 52.381 0.00 0.00 0.00 3.35
4034 4791 0.179037 TGCTATCCATGTGCCAGAGC 60.179 55.000 0.00 0.00 40.48 4.09
4035 4792 0.888285 GCTATCCATGTGCCAGAGCC 60.888 60.000 0.00 0.00 38.69 4.70
4036 4793 0.471191 CTATCCATGTGCCAGAGCCA 59.529 55.000 0.00 0.00 38.69 4.75
4037 4794 1.073444 CTATCCATGTGCCAGAGCCAT 59.927 52.381 0.00 0.00 38.69 4.40
4038 4795 0.467474 ATCCATGTGCCAGAGCCATG 60.467 55.000 8.59 8.59 42.54 3.66
4039 4796 1.077285 CCATGTGCCAGAGCCATGA 60.077 57.895 14.22 0.00 44.14 3.07
4040 4797 1.101635 CCATGTGCCAGAGCCATGAG 61.102 60.000 14.22 5.17 44.14 2.90
4041 4798 0.393944 CATGTGCCAGAGCCATGAGT 60.394 55.000 0.00 0.00 44.14 3.41
4042 4799 0.330604 ATGTGCCAGAGCCATGAGTT 59.669 50.000 0.00 0.00 38.69 3.01
4043 4800 0.607217 TGTGCCAGAGCCATGAGTTG 60.607 55.000 0.00 0.00 38.69 3.16
4051 4808 3.786101 CCATGAGTTGGTCGCGAG 58.214 61.111 10.24 0.00 40.99 5.03
4052 4809 1.215382 CCATGAGTTGGTCGCGAGA 59.785 57.895 10.24 0.00 40.99 4.04
4053 4810 0.179100 CCATGAGTTGGTCGCGAGAT 60.179 55.000 10.24 0.00 45.19 2.75
4054 4811 1.203928 CATGAGTTGGTCGCGAGATC 58.796 55.000 10.24 2.63 45.19 2.75
4055 4812 1.107114 ATGAGTTGGTCGCGAGATCT 58.893 50.000 10.24 5.84 43.23 2.75
4056 4813 0.888619 TGAGTTGGTCGCGAGATCTT 59.111 50.000 10.24 0.00 43.23 2.40
4057 4814 2.089201 TGAGTTGGTCGCGAGATCTTA 58.911 47.619 10.24 0.00 43.23 2.10
4058 4815 2.688446 TGAGTTGGTCGCGAGATCTTAT 59.312 45.455 10.24 0.00 43.23 1.73
4059 4816 3.046390 GAGTTGGTCGCGAGATCTTATG 58.954 50.000 10.24 0.00 43.23 1.90
4060 4817 2.128035 GTTGGTCGCGAGATCTTATGG 58.872 52.381 10.24 0.00 43.23 2.74
4061 4818 0.673985 TGGTCGCGAGATCTTATGGG 59.326 55.000 10.24 0.00 43.23 4.00
4062 4819 0.674534 GGTCGCGAGATCTTATGGGT 59.325 55.000 10.24 0.00 45.19 4.51
4063 4820 1.068741 GGTCGCGAGATCTTATGGGTT 59.931 52.381 10.24 0.00 45.19 4.11
4064 4821 2.483188 GGTCGCGAGATCTTATGGGTTT 60.483 50.000 10.24 0.00 45.19 3.27
4065 4822 2.795470 GTCGCGAGATCTTATGGGTTTC 59.205 50.000 10.24 0.00 45.19 2.78
4066 4823 2.429250 TCGCGAGATCTTATGGGTTTCA 59.571 45.455 3.71 0.00 33.31 2.69
4067 4824 2.540101 CGCGAGATCTTATGGGTTTCAC 59.460 50.000 0.00 0.00 0.00 3.18
4068 4825 2.872858 GCGAGATCTTATGGGTTTCACC 59.127 50.000 0.00 0.00 37.60 4.02
4069 4826 3.432326 GCGAGATCTTATGGGTTTCACCT 60.432 47.826 0.00 0.00 38.64 4.00
4070 4827 4.372656 CGAGATCTTATGGGTTTCACCTC 58.627 47.826 0.00 0.00 38.64 3.85
4071 4828 4.100189 CGAGATCTTATGGGTTTCACCTCT 59.900 45.833 0.00 0.00 38.64 3.69
4072 4829 5.302059 CGAGATCTTATGGGTTTCACCTCTA 59.698 44.000 0.00 0.00 38.64 2.43
4073 4830 6.515862 CGAGATCTTATGGGTTTCACCTCTAG 60.516 46.154 0.00 0.00 38.64 2.43
4074 4831 4.755266 TCTTATGGGTTTCACCTCTAGC 57.245 45.455 0.00 0.00 38.64 3.42
4075 4832 3.454812 TCTTATGGGTTTCACCTCTAGCC 59.545 47.826 0.00 0.00 38.64 3.93
4076 4833 1.972588 ATGGGTTTCACCTCTAGCCT 58.027 50.000 0.00 0.00 38.64 4.58
4077 4834 2.634639 TGGGTTTCACCTCTAGCCTA 57.365 50.000 0.00 0.00 38.64 3.93
4078 4835 3.130734 TGGGTTTCACCTCTAGCCTAT 57.869 47.619 0.00 0.00 38.64 2.57
4079 4836 3.039011 TGGGTTTCACCTCTAGCCTATC 58.961 50.000 0.00 0.00 38.64 2.08
4080 4837 2.369203 GGGTTTCACCTCTAGCCTATCC 59.631 54.545 0.00 0.00 38.64 2.59
4081 4838 2.369203 GGTTTCACCTCTAGCCTATCCC 59.631 54.545 0.00 0.00 34.73 3.85
4082 4839 3.039011 GTTTCACCTCTAGCCTATCCCA 58.961 50.000 0.00 0.00 0.00 4.37
4083 4840 3.414759 TTCACCTCTAGCCTATCCCAA 57.585 47.619 0.00 0.00 0.00 4.12
4084 4841 2.679082 TCACCTCTAGCCTATCCCAAC 58.321 52.381 0.00 0.00 0.00 3.77
4085 4842 2.247635 TCACCTCTAGCCTATCCCAACT 59.752 50.000 0.00 0.00 0.00 3.16
4086 4843 3.041946 CACCTCTAGCCTATCCCAACTT 58.958 50.000 0.00 0.00 0.00 2.66
4087 4844 3.041946 ACCTCTAGCCTATCCCAACTTG 58.958 50.000 0.00 0.00 0.00 3.16
4088 4845 3.041946 CCTCTAGCCTATCCCAACTTGT 58.958 50.000 0.00 0.00 0.00 3.16
4089 4846 3.456277 CCTCTAGCCTATCCCAACTTGTT 59.544 47.826 0.00 0.00 0.00 2.83
4090 4847 4.080299 CCTCTAGCCTATCCCAACTTGTTT 60.080 45.833 0.00 0.00 0.00 2.83
4091 4848 4.843728 TCTAGCCTATCCCAACTTGTTTG 58.156 43.478 0.00 0.00 34.63 2.93
4102 4859 3.977427 CAACTTGTTTGGGACTAAAGGC 58.023 45.455 0.00 0.00 0.00 4.35
4103 4860 3.595190 ACTTGTTTGGGACTAAAGGCT 57.405 42.857 0.00 0.00 0.00 4.58
4104 4861 3.910989 ACTTGTTTGGGACTAAAGGCTT 58.089 40.909 0.00 0.00 0.00 4.35
4105 4862 4.286707 ACTTGTTTGGGACTAAAGGCTTT 58.713 39.130 17.76 17.76 0.00 3.51
4106 4863 4.099419 ACTTGTTTGGGACTAAAGGCTTTG 59.901 41.667 22.32 13.97 0.00 2.77
4107 4864 3.637769 TGTTTGGGACTAAAGGCTTTGT 58.362 40.909 22.32 16.86 0.00 2.83
4108 4865 4.027437 TGTTTGGGACTAAAGGCTTTGTT 58.973 39.130 22.32 8.73 0.00 2.83
4109 4866 4.142049 TGTTTGGGACTAAAGGCTTTGTTG 60.142 41.667 22.32 13.85 0.00 3.33
4110 4867 3.306472 TGGGACTAAAGGCTTTGTTGT 57.694 42.857 22.32 16.69 0.00 3.32
4111 4868 3.637769 TGGGACTAAAGGCTTTGTTGTT 58.362 40.909 22.32 1.84 0.00 2.83
4112 4869 3.383185 TGGGACTAAAGGCTTTGTTGTTG 59.617 43.478 22.32 7.79 0.00 3.33
4113 4870 3.383505 GGGACTAAAGGCTTTGTTGTTGT 59.616 43.478 22.32 10.58 0.00 3.32
4114 4871 4.142026 GGGACTAAAGGCTTTGTTGTTGTT 60.142 41.667 22.32 0.00 0.00 2.83
4115 4872 4.803613 GGACTAAAGGCTTTGTTGTTGTTG 59.196 41.667 22.32 0.00 0.00 3.33
4116 4873 5.400066 ACTAAAGGCTTTGTTGTTGTTGT 57.600 34.783 22.32 0.00 0.00 3.32
4117 4874 5.789521 ACTAAAGGCTTTGTTGTTGTTGTT 58.210 33.333 22.32 0.00 0.00 2.83
4118 4875 5.637387 ACTAAAGGCTTTGTTGTTGTTGTTG 59.363 36.000 22.32 0.00 0.00 3.33
4119 4876 3.676291 AGGCTTTGTTGTTGTTGTTGT 57.324 38.095 0.00 0.00 0.00 3.32
4120 4877 4.001618 AGGCTTTGTTGTTGTTGTTGTT 57.998 36.364 0.00 0.00 0.00 2.83
4121 4878 3.745458 AGGCTTTGTTGTTGTTGTTGTTG 59.255 39.130 0.00 0.00 0.00 3.33
4122 4879 3.496507 GGCTTTGTTGTTGTTGTTGTTGT 59.503 39.130 0.00 0.00 0.00 3.32
4123 4880 4.024472 GGCTTTGTTGTTGTTGTTGTTGTT 60.024 37.500 0.00 0.00 0.00 2.83
4124 4881 4.903016 GCTTTGTTGTTGTTGTTGTTGTTG 59.097 37.500 0.00 0.00 0.00 3.33
4125 4882 5.503194 GCTTTGTTGTTGTTGTTGTTGTTGT 60.503 36.000 0.00 0.00 0.00 3.32
4126 4883 6.422776 TTTGTTGTTGTTGTTGTTGTTGTT 57.577 29.167 0.00 0.00 0.00 2.83
4127 4884 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
4128 4885 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
4129 4886 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
4632 5390 1.202076 GCATTACTCTTTCTGCCGTGC 60.202 52.381 0.00 0.00 0.00 5.34
4732 5490 3.121019 CTAGGCGCTCGCTTAGGT 58.879 61.111 20.91 3.16 43.99 3.08
4762 5520 3.067084 TGGCACCTGGCAGTCCAAA 62.067 57.895 14.43 0.00 46.12 3.28
4763 5521 2.580155 TGGCACCTGGCAGTCCAAAA 62.580 55.000 14.43 0.00 46.12 2.44
4764 5522 2.123409 GCACCTGGCAGTCCAAAAA 58.877 52.632 14.43 0.00 42.91 1.94
4840 5598 0.183731 AATCTCCCCGGCCAGATTTC 59.816 55.000 16.63 0.00 36.15 2.17
4933 5691 1.003580 TCTGGCAAGGAATCGAGCTTT 59.996 47.619 0.00 0.00 0.00 3.51
4944 5702 1.962822 CGAGCTTTGCTGTGGCTGA 60.963 57.895 0.00 0.00 39.88 4.26
4948 5706 1.012486 GCTTTGCTGTGGCTGATTGC 61.012 55.000 0.00 0.00 39.59 3.56
4979 5737 4.316823 AGGGAGGTGGCGTGAGGA 62.317 66.667 0.00 0.00 0.00 3.71
5014 5772 4.730600 TGCTGTGTATATATGCGCTTTG 57.269 40.909 9.73 6.95 0.00 2.77
5071 5830 2.269940 AGTGTTCAGCTAGGGTCCATT 58.730 47.619 0.00 0.00 0.00 3.16
5895 6657 3.053831 AGTTGACACCAGGTATTTCGG 57.946 47.619 0.00 0.00 0.00 4.30
6242 7866 3.316308 GCTACTGTGCTATTTCCCCAATG 59.684 47.826 0.00 0.00 0.00 2.82
6249 7873 3.640967 TGCTATTTCCCCAATGTTATGCC 59.359 43.478 0.00 0.00 0.00 4.40
6556 8184 0.880278 TGCGTCTGGCTGAAGTTGAC 60.880 55.000 8.85 0.00 44.05 3.18
6622 8250 2.239150 AGCTCAATCAACTGAGATGGCT 59.761 45.455 4.81 0.00 44.82 4.75
6711 8339 4.692228 ACGAAGCAAAAACATGGAAATGT 58.308 34.783 0.00 0.00 36.10 2.71
6849 8477 1.073199 CAAACGGTTCTGCCCTCCT 59.927 57.895 0.00 0.00 0.00 3.69
6850 8478 0.955919 CAAACGGTTCTGCCCTCCTC 60.956 60.000 0.00 0.00 0.00 3.71
6851 8479 2.125766 AAACGGTTCTGCCCTCCTCC 62.126 60.000 0.00 0.00 0.00 4.30
6960 8589 8.213679 TCTGCAGCTACCTTTTTGAGATATATT 58.786 33.333 9.47 0.00 0.00 1.28
7037 8666 9.748708 CAGTGGAAGTATTGAAATTGAGAAAAA 57.251 29.630 0.00 0.00 0.00 1.94
7060 8689 3.077484 ACTCACCAATCCAGGAACATG 57.923 47.619 0.00 0.00 0.00 3.21
7508 9141 6.936279 AGCACTATTAGCTTGTTAGTCTTGA 58.064 36.000 0.00 0.00 39.87 3.02
7509 9142 7.038659 AGCACTATTAGCTTGTTAGTCTTGAG 58.961 38.462 0.00 0.00 39.87 3.02
7510 9143 6.237969 GCACTATTAGCTTGTTAGTCTTGAGC 60.238 42.308 0.00 0.00 0.00 4.26
7511 9144 6.020281 CACTATTAGCTTGTTAGTCTTGAGCG 60.020 42.308 0.00 0.00 38.34 5.03
7668 9301 9.423061 GACATTATTTTATTTGTCTTTGCAGGT 57.577 29.630 0.00 0.00 36.43 4.00
7807 9440 3.686016 ACCCTGTATTTACTGTTGCCAG 58.314 45.455 0.00 0.00 44.68 4.85
7877 9510 3.123620 GCCTCTGCTGTTCTGGCG 61.124 66.667 0.00 0.00 33.96 5.69
7885 9518 3.194755 TCTGCTGTTCTGGCGTCTAATAA 59.805 43.478 0.00 0.00 0.00 1.40
7896 9529 3.181517 GGCGTCTAATAAACCGAACAACC 60.182 47.826 0.00 0.00 0.00 3.77
8233 9866 3.399330 TGTCTCCGGAAGAATCAAACAC 58.601 45.455 5.23 0.00 35.21 3.32
8240 9873 1.468914 GAAGAATCAAACACGGGGAGC 59.531 52.381 0.00 0.00 0.00 4.70
8459 10104 1.000274 GGCATGCCGAATAATGGTTCC 60.000 52.381 23.48 0.00 0.00 3.62
8507 10152 4.662145 CTGTATTTTCATTCACTTCGGCC 58.338 43.478 0.00 0.00 0.00 6.13
8615 10260 3.788142 AGATGACTGTGGGGAATAACCAT 59.212 43.478 0.00 0.00 40.70 3.55
8828 10473 0.179004 TTTCAATGGGCACTGTCCGT 60.179 50.000 0.00 0.00 0.00 4.69
8965 10613 6.154445 CCTACATTGCAAATTGATATGGCTC 58.846 40.000 1.71 0.00 0.00 4.70
9195 10845 6.115448 AGGTATCTGTTCTTGTTACTGCTT 57.885 37.500 0.00 0.00 0.00 3.91
9348 10998 3.190874 CATCTCGTCCAGAGTTTTAGCC 58.809 50.000 0.00 0.00 46.86 3.93
9381 11031 3.531538 TGAGATTGATCTAACGTTGCCC 58.468 45.455 11.99 0.00 37.25 5.36
9462 11112 2.094078 CACCGGAACCATGATTTGCATT 60.094 45.455 9.46 0.00 34.15 3.56
9463 11113 2.566724 ACCGGAACCATGATTTGCATTT 59.433 40.909 9.46 0.00 34.15 2.32
9464 11114 3.007831 ACCGGAACCATGATTTGCATTTT 59.992 39.130 9.46 0.00 34.15 1.82
9465 11115 4.002316 CCGGAACCATGATTTGCATTTTT 58.998 39.130 0.00 0.00 34.15 1.94
9466 11116 5.174395 CCGGAACCATGATTTGCATTTTTA 58.826 37.500 0.00 0.00 34.15 1.52
9467 11117 5.291614 CCGGAACCATGATTTGCATTTTTAG 59.708 40.000 0.00 0.00 34.15 1.85
9468 11118 6.098679 CGGAACCATGATTTGCATTTTTAGA 58.901 36.000 0.00 0.00 34.15 2.10
9469 11119 6.757947 CGGAACCATGATTTGCATTTTTAGAT 59.242 34.615 0.00 0.00 34.15 1.98
9470 11120 7.278424 CGGAACCATGATTTGCATTTTTAGATT 59.722 33.333 0.00 0.00 34.15 2.40
9471 11121 9.598517 GGAACCATGATTTGCATTTTTAGATTA 57.401 29.630 0.00 0.00 34.15 1.75
9550 11200 6.552725 TGCAATGGGGCATAAATATTCTTGTA 59.447 34.615 0.00 0.00 39.25 2.41
9553 11203 8.587608 CAATGGGGCATAAATATTCTTGTATGT 58.412 33.333 6.70 0.00 0.00 2.29
9651 11410 4.238761 TGCACATATACGAGAGCTAACC 57.761 45.455 0.00 0.00 0.00 2.85
9786 11545 5.691305 GTGTTGCTCACAAGAAAATAATGCA 59.309 36.000 0.00 0.00 45.51 3.96
9798 11557 7.658179 AGAAAATAATGCACATACGATCGAT 57.342 32.000 24.34 8.18 0.00 3.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
122 124 0.179084 ATTATCCTGTCCACACGCCG 60.179 55.000 0.00 0.00 0.00 6.46
125 127 1.953559 CCCATTATCCTGTCCACACG 58.046 55.000 0.00 0.00 0.00 4.49
163 165 2.740055 GCCTATCCGCGATGGCAG 60.740 66.667 20.52 6.50 44.34 4.85
294 296 1.271102 GAGATTCCTCGAGATTCCGGG 59.729 57.143 15.71 0.00 0.00 5.73
328 331 1.068352 ATTCCCCCTCCCCTATGTGC 61.068 60.000 0.00 0.00 0.00 4.57
356 363 0.327924 TCCATCCCACGCTCACATTT 59.672 50.000 0.00 0.00 0.00 2.32
743 768 4.671377 TGATACGAAATGGCTGATTTTGC 58.329 39.130 0.00 0.00 38.57 3.68
762 787 6.420604 CCAGTTACTTTTGCACGAATTTTGAT 59.579 34.615 0.00 0.00 0.00 2.57
767 792 4.553938 CGTCCAGTTACTTTTGCACGAATT 60.554 41.667 0.00 0.00 0.00 2.17
796 821 2.738743 CCAACTCACCCATATGCCTTT 58.261 47.619 0.00 0.00 0.00 3.11
804 829 1.423541 TGTGTTAGCCAACTCACCCAT 59.576 47.619 0.00 0.00 34.20 4.00
909 939 9.392259 GTAAAATAGTGATTACTACAAGGGCTT 57.608 33.333 0.00 0.00 41.92 4.35
920 950 7.803131 AGAGGAAGGGGTAAAATAGTGATTAC 58.197 38.462 0.00 0.00 0.00 1.89
921 951 7.849904 AGAGAGGAAGGGGTAAAATAGTGATTA 59.150 37.037 0.00 0.00 0.00 1.75
922 952 6.678857 AGAGAGGAAGGGGTAAAATAGTGATT 59.321 38.462 0.00 0.00 0.00 2.57
1111 1141 1.676678 TAGGGTGACGCTGGATGAGC 61.677 60.000 12.79 0.00 45.20 4.26
1138 1168 4.172512 ATGAGCAGGAGCAGCCGG 62.173 66.667 0.00 0.00 45.49 6.13
1139 1169 2.588314 GATGAGCAGGAGCAGCCG 60.588 66.667 0.00 0.00 45.49 5.52
1140 1170 2.203181 GGATGAGCAGGAGCAGCC 60.203 66.667 0.00 0.00 45.49 4.85
1141 1171 1.524165 CTGGATGAGCAGGAGCAGC 60.524 63.158 0.00 0.00 45.49 5.25
1142 1172 4.859400 CTGGATGAGCAGGAGCAG 57.141 61.111 0.00 0.00 45.49 4.24
1150 1180 2.447887 CGTGTGACGCTGGATGAGC 61.448 63.158 0.00 0.00 45.20 4.26
1151 1181 1.807165 CCGTGTGACGCTGGATGAG 60.807 63.158 1.70 0.00 40.91 2.90
1152 1182 2.261361 CCGTGTGACGCTGGATGA 59.739 61.111 1.70 0.00 40.91 2.92
1153 1183 3.490759 GCCGTGTGACGCTGGATG 61.491 66.667 10.36 0.00 40.91 3.51
1160 1190 3.403057 CTTCACCGCCGTGTGACG 61.403 66.667 7.73 3.54 44.55 4.35
1161 1191 3.041940 CCTTCACCGCCGTGTGAC 61.042 66.667 7.73 0.00 44.55 3.67
1162 1192 4.308458 CCCTTCACCGCCGTGTGA 62.308 66.667 5.09 4.62 43.26 3.58
1163 1193 4.308458 TCCCTTCACCGCCGTGTG 62.308 66.667 5.09 0.10 41.09 3.82
1164 1194 4.003788 CTCCCTTCACCGCCGTGT 62.004 66.667 5.09 0.00 41.09 4.49
1591 1621 6.633325 AGAATTATCTCCCATATCACAGGG 57.367 41.667 0.00 0.00 46.90 4.45
1863 1896 3.863400 GCTTAAACTCGGTGTCTAGGCAA 60.863 47.826 0.00 0.00 0.00 4.52
1993 2026 7.625828 ATCATAACTTTTTGCAGGTACTACC 57.374 36.000 0.00 0.00 36.02 3.18
2137 2172 7.139392 GGTAGCACCTCTAAAAAGTTTTGAAG 58.861 38.462 0.61 3.37 34.73 3.02
2379 2438 3.133542 TCAGTAGACAGATTCTGCATGGG 59.866 47.826 13.64 0.25 39.36 4.00
2528 2587 3.814842 CCACACTAACACTGCTCAAATGA 59.185 43.478 0.00 0.00 0.00 2.57
2616 2959 5.123979 GGACAAGGTGATGTGAATTTCCTAC 59.876 44.000 0.00 0.00 32.57 3.18
2686 3029 2.002586 CCCACAGTTCTTGATAGCGTG 58.997 52.381 0.00 0.00 0.00 5.34
2687 3030 1.623811 ACCCACAGTTCTTGATAGCGT 59.376 47.619 0.00 0.00 0.00 5.07
2688 3031 2.386661 ACCCACAGTTCTTGATAGCG 57.613 50.000 0.00 0.00 0.00 4.26
2689 3032 4.816925 GGATAACCCACAGTTCTTGATAGC 59.183 45.833 0.00 0.00 40.05 2.97
2690 3033 6.240549 AGGATAACCCACAGTTCTTGATAG 57.759 41.667 0.00 0.00 40.05 2.08
2691 3034 6.636454 AAGGATAACCCACAGTTCTTGATA 57.364 37.500 0.00 0.00 40.05 2.15
2692 3035 5.520748 AAGGATAACCCACAGTTCTTGAT 57.479 39.130 0.00 0.00 40.05 2.57
2716 3059 6.014669 CCCAACAAAATATCAAAGGAACCAGA 60.015 38.462 0.00 0.00 0.00 3.86
2780 3123 9.674068 TGCTACCAACATGACAAATATAACTTA 57.326 29.630 0.00 0.00 0.00 2.24
2781 3124 8.574251 TGCTACCAACATGACAAATATAACTT 57.426 30.769 0.00 0.00 0.00 2.66
2782 3125 8.574251 TTGCTACCAACATGACAAATATAACT 57.426 30.769 0.00 0.00 0.00 2.24
2783 3126 9.072294 GTTTGCTACCAACATGACAAATATAAC 57.928 33.333 0.00 0.00 30.59 1.89
2873 3216 2.548493 GCCACACATTGCAATTGTCCTT 60.548 45.455 9.83 0.00 0.00 3.36
2874 3217 1.001181 GCCACACATTGCAATTGTCCT 59.999 47.619 9.83 0.00 0.00 3.85
2876 3219 1.794116 GTGCCACACATTGCAATTGTC 59.206 47.619 9.83 7.60 39.57 3.18
2877 3220 1.868469 GTGCCACACATTGCAATTGT 58.132 45.000 9.83 14.19 39.57 2.71
2879 3222 0.945265 GCGTGCCACACATTGCAATT 60.945 50.000 9.83 0.00 39.57 2.32
2905 3248 7.068716 GGACCATACAGATAAGAAGCCAAAATT 59.931 37.037 0.00 0.00 0.00 1.82
2915 3258 4.523173 GGTGATCGGACCATACAGATAAGA 59.477 45.833 0.00 0.00 35.88 2.10
2960 3303 7.212274 AGGATTTGAGGAAAATGTGAAAACAG 58.788 34.615 0.00 0.00 38.64 3.16
3036 3379 8.606830 AGTACCCAAGAGAATGTAAAGAAATCT 58.393 33.333 0.00 0.00 0.00 2.40
3120 3463 1.063567 ACTACTCCAGCCTCGAGGAAT 60.064 52.381 35.69 19.52 37.39 3.01
3130 3473 0.909623 TTAGGCCCAACTACTCCAGC 59.090 55.000 0.00 0.00 0.00 4.85
3186 3529 3.115390 ACCCTATGCCACAGTTCTATGT 58.885 45.455 0.00 0.00 0.00 2.29
3288 3631 9.354673 AGAAACAAGGAATCAGAACAATAAGAA 57.645 29.630 0.00 0.00 0.00 2.52
3289 3632 8.924511 AGAAACAAGGAATCAGAACAATAAGA 57.075 30.769 0.00 0.00 0.00 2.10
3391 3735 9.520204 CAGAACATGAACTCAAGTTTTAACATT 57.480 29.630 0.00 0.00 37.82 2.71
3392 3736 7.649306 GCAGAACATGAACTCAAGTTTTAACAT 59.351 33.333 0.00 0.00 37.82 2.71
3393 3737 6.972328 GCAGAACATGAACTCAAGTTTTAACA 59.028 34.615 0.00 0.00 37.82 2.41
3395 3739 7.333528 AGCAGAACATGAACTCAAGTTTTAA 57.666 32.000 0.00 0.00 37.82 1.52
3522 4278 7.004555 ACAGAACATACAGACAGTTATTCCA 57.995 36.000 0.00 0.00 0.00 3.53
3813 4570 9.529325 AGTAGTTCCAAACTTTTAAGCAAAATC 57.471 29.630 0.00 0.00 42.81 2.17
3918 4675 7.925993 TGCGTCAAGATATAAAAACCTATTGG 58.074 34.615 0.00 0.00 39.83 3.16
3939 4696 3.997021 CAGGTCTCTCTTAACAAATGCGT 59.003 43.478 0.00 0.00 0.00 5.24
3940 4697 4.245660 TCAGGTCTCTCTTAACAAATGCG 58.754 43.478 0.00 0.00 0.00 4.73
3941 4698 5.123027 CCTTCAGGTCTCTCTTAACAAATGC 59.877 44.000 0.00 0.00 0.00 3.56
3942 4699 6.467677 TCCTTCAGGTCTCTCTTAACAAATG 58.532 40.000 0.00 0.00 36.34 2.32
3943 4700 6.688073 TCCTTCAGGTCTCTCTTAACAAAT 57.312 37.500 0.00 0.00 36.34 2.32
3944 4701 6.688073 ATCCTTCAGGTCTCTCTTAACAAA 57.312 37.500 0.00 0.00 36.34 2.83
3945 4702 6.467677 CAATCCTTCAGGTCTCTCTTAACAA 58.532 40.000 0.00 0.00 36.34 2.83
3946 4703 5.046304 CCAATCCTTCAGGTCTCTCTTAACA 60.046 44.000 0.00 0.00 36.34 2.41
3947 4704 5.187967 TCCAATCCTTCAGGTCTCTCTTAAC 59.812 44.000 0.00 0.00 36.34 2.01
3948 4705 5.342017 TCCAATCCTTCAGGTCTCTCTTAA 58.658 41.667 0.00 0.00 36.34 1.85
3949 4706 4.947883 TCCAATCCTTCAGGTCTCTCTTA 58.052 43.478 0.00 0.00 36.34 2.10
3950 4707 3.774216 CTCCAATCCTTCAGGTCTCTCTT 59.226 47.826 0.00 0.00 36.34 2.85
3951 4708 3.245948 ACTCCAATCCTTCAGGTCTCTCT 60.246 47.826 0.00 0.00 36.34 3.10
3952 4709 3.103742 ACTCCAATCCTTCAGGTCTCTC 58.896 50.000 0.00 0.00 36.34 3.20
3953 4710 3.197927 ACTCCAATCCTTCAGGTCTCT 57.802 47.619 0.00 0.00 36.34 3.10
3954 4711 4.651503 TGATACTCCAATCCTTCAGGTCTC 59.348 45.833 0.00 0.00 36.34 3.36
3955 4712 4.407296 GTGATACTCCAATCCTTCAGGTCT 59.593 45.833 0.00 0.00 36.34 3.85
3956 4713 4.443598 GGTGATACTCCAATCCTTCAGGTC 60.444 50.000 0.00 0.00 36.34 3.85
3957 4714 3.456277 GGTGATACTCCAATCCTTCAGGT 59.544 47.826 0.00 0.00 36.34 4.00
3958 4715 3.455910 TGGTGATACTCCAATCCTTCAGG 59.544 47.826 0.00 0.00 31.50 3.86
3959 4716 4.760530 TGGTGATACTCCAATCCTTCAG 57.239 45.455 0.00 0.00 31.50 3.02
3960 4717 5.250543 TCTTTGGTGATACTCCAATCCTTCA 59.749 40.000 6.20 0.00 43.25 3.02
3961 4718 5.745227 TCTTTGGTGATACTCCAATCCTTC 58.255 41.667 6.20 0.00 43.25 3.46
3962 4719 5.779241 TCTTTGGTGATACTCCAATCCTT 57.221 39.130 6.20 0.00 43.25 3.36
3963 4720 5.251700 AGTTCTTTGGTGATACTCCAATCCT 59.748 40.000 6.20 0.00 43.25 3.24
3964 4721 5.501156 AGTTCTTTGGTGATACTCCAATCC 58.499 41.667 6.20 0.00 43.25 3.01
3965 4722 6.258947 GCTAGTTCTTTGGTGATACTCCAATC 59.741 42.308 6.20 0.00 43.25 2.67
3966 4723 6.069963 AGCTAGTTCTTTGGTGATACTCCAAT 60.070 38.462 6.20 0.00 43.25 3.16
3967 4724 5.248477 AGCTAGTTCTTTGGTGATACTCCAA 59.752 40.000 0.00 0.00 42.29 3.53
3968 4725 4.777896 AGCTAGTTCTTTGGTGATACTCCA 59.222 41.667 0.00 0.00 0.00 3.86
3969 4726 5.346181 AGCTAGTTCTTTGGTGATACTCC 57.654 43.478 0.00 0.00 0.00 3.85
3970 4727 6.926272 CCATAGCTAGTTCTTTGGTGATACTC 59.074 42.308 0.00 0.00 32.65 2.59
3971 4728 6.611642 TCCATAGCTAGTTCTTTGGTGATACT 59.388 38.462 8.33 0.00 36.79 2.12
3972 4729 6.702282 GTCCATAGCTAGTTCTTTGGTGATAC 59.298 42.308 8.33 0.00 36.79 2.24
3973 4730 6.382859 TGTCCATAGCTAGTTCTTTGGTGATA 59.617 38.462 8.33 0.00 36.79 2.15
3974 4731 5.189736 TGTCCATAGCTAGTTCTTTGGTGAT 59.810 40.000 8.33 0.00 36.79 3.06
3975 4732 4.530553 TGTCCATAGCTAGTTCTTTGGTGA 59.469 41.667 8.33 0.00 36.79 4.02
3976 4733 4.832248 TGTCCATAGCTAGTTCTTTGGTG 58.168 43.478 8.33 0.00 36.79 4.17
3977 4734 4.080863 CCTGTCCATAGCTAGTTCTTTGGT 60.081 45.833 8.33 0.00 36.79 3.67
3978 4735 4.446371 CCTGTCCATAGCTAGTTCTTTGG 58.554 47.826 0.00 0.65 36.78 3.28
3979 4736 4.162320 TCCCTGTCCATAGCTAGTTCTTTG 59.838 45.833 0.00 0.00 0.00 2.77
3980 4737 4.362677 TCCCTGTCCATAGCTAGTTCTTT 58.637 43.478 0.00 0.00 0.00 2.52
3981 4738 3.995636 TCCCTGTCCATAGCTAGTTCTT 58.004 45.455 0.00 0.00 0.00 2.52
3982 4739 3.689872 TCCCTGTCCATAGCTAGTTCT 57.310 47.619 0.00 0.00 0.00 3.01
3983 4740 3.556004 GCATCCCTGTCCATAGCTAGTTC 60.556 52.174 0.00 0.00 0.00 3.01
3984 4741 2.370189 GCATCCCTGTCCATAGCTAGTT 59.630 50.000 0.00 0.00 0.00 2.24
3985 4742 1.974236 GCATCCCTGTCCATAGCTAGT 59.026 52.381 0.00 0.00 0.00 2.57
3986 4743 1.067283 CGCATCCCTGTCCATAGCTAG 60.067 57.143 0.00 0.00 0.00 3.42
3987 4744 0.969149 CGCATCCCTGTCCATAGCTA 59.031 55.000 0.00 0.00 0.00 3.32
3988 4745 1.050988 ACGCATCCCTGTCCATAGCT 61.051 55.000 0.00 0.00 0.00 3.32
3989 4746 0.882042 CACGCATCCCTGTCCATAGC 60.882 60.000 0.00 0.00 0.00 2.97
3990 4747 0.250038 CCACGCATCCCTGTCCATAG 60.250 60.000 0.00 0.00 0.00 2.23
3991 4748 0.689412 TCCACGCATCCCTGTCCATA 60.689 55.000 0.00 0.00 0.00 2.74
3992 4749 1.561769 TTCCACGCATCCCTGTCCAT 61.562 55.000 0.00 0.00 0.00 3.41
3993 4750 2.184020 CTTCCACGCATCCCTGTCCA 62.184 60.000 0.00 0.00 0.00 4.02
3994 4751 1.450312 CTTCCACGCATCCCTGTCC 60.450 63.158 0.00 0.00 0.00 4.02
3995 4752 2.109126 GCTTCCACGCATCCCTGTC 61.109 63.158 0.00 0.00 0.00 3.51
3996 4753 2.045926 GCTTCCACGCATCCCTGT 60.046 61.111 0.00 0.00 0.00 4.00
3997 4754 1.377725 AAGCTTCCACGCATCCCTG 60.378 57.895 0.00 0.00 0.00 4.45
3998 4755 1.377725 CAAGCTTCCACGCATCCCT 60.378 57.895 0.00 0.00 0.00 4.20
3999 4756 3.056313 GCAAGCTTCCACGCATCCC 62.056 63.158 0.00 0.00 0.00 3.85
4000 4757 0.744414 TAGCAAGCTTCCACGCATCC 60.744 55.000 8.96 0.00 0.00 3.51
4001 4758 1.262683 GATAGCAAGCTTCCACGCATC 59.737 52.381 8.96 6.32 0.00 3.91
4002 4759 1.303309 GATAGCAAGCTTCCACGCAT 58.697 50.000 8.96 1.45 0.00 4.73
4003 4760 0.744414 GGATAGCAAGCTTCCACGCA 60.744 55.000 8.96 0.00 0.00 5.24
4004 4761 0.744414 TGGATAGCAAGCTTCCACGC 60.744 55.000 16.61 0.00 34.65 5.34
4005 4762 1.600957 CATGGATAGCAAGCTTCCACG 59.399 52.381 20.41 13.24 42.09 4.94
4006 4763 2.357009 CACATGGATAGCAAGCTTCCAC 59.643 50.000 20.41 0.00 42.09 4.02
4007 4764 2.646930 CACATGGATAGCAAGCTTCCA 58.353 47.619 20.33 20.33 43.37 3.53
4008 4765 1.336125 GCACATGGATAGCAAGCTTCC 59.664 52.381 0.00 7.95 0.00 3.46
4009 4766 1.336125 GGCACATGGATAGCAAGCTTC 59.664 52.381 0.00 0.00 0.00 3.86
4010 4767 1.341285 TGGCACATGGATAGCAAGCTT 60.341 47.619 0.00 0.00 0.00 3.74
4011 4768 0.256752 TGGCACATGGATAGCAAGCT 59.743 50.000 0.00 0.00 0.00 3.74
4012 4769 0.666913 CTGGCACATGGATAGCAAGC 59.333 55.000 0.00 0.00 38.20 4.01
4013 4770 2.219458 CTCTGGCACATGGATAGCAAG 58.781 52.381 0.00 0.00 38.20 4.01
4014 4771 1.748244 GCTCTGGCACATGGATAGCAA 60.748 52.381 0.00 0.00 38.20 3.91
4015 4772 0.179037 GCTCTGGCACATGGATAGCA 60.179 55.000 0.00 0.00 38.20 3.49
4016 4773 0.888285 GGCTCTGGCACATGGATAGC 60.888 60.000 0.00 0.00 38.20 2.97
4017 4774 0.471191 TGGCTCTGGCACATGGATAG 59.529 55.000 0.00 0.00 38.20 2.08
4018 4775 1.142936 ATGGCTCTGGCACATGGATA 58.857 50.000 0.00 0.00 41.84 2.59
4019 4776 0.467474 CATGGCTCTGGCACATGGAT 60.467 55.000 7.68 0.00 41.84 3.41
4020 4777 1.077285 CATGGCTCTGGCACATGGA 60.077 57.895 7.68 0.00 41.84 3.41
4021 4778 1.077285 TCATGGCTCTGGCACATGG 60.077 57.895 13.76 0.00 41.84 3.66
4022 4779 0.393944 ACTCATGGCTCTGGCACATG 60.394 55.000 8.97 8.97 41.84 3.21
4023 4780 0.330604 AACTCATGGCTCTGGCACAT 59.669 50.000 0.00 0.00 41.84 3.21
4024 4781 0.607217 CAACTCATGGCTCTGGCACA 60.607 55.000 0.00 0.00 41.84 4.57
4025 4782 1.310933 CCAACTCATGGCTCTGGCAC 61.311 60.000 0.00 0.00 43.80 5.01
4026 4783 1.001764 CCAACTCATGGCTCTGGCA 60.002 57.895 0.00 0.00 43.80 4.92
4027 4784 3.915575 CCAACTCATGGCTCTGGC 58.084 61.111 0.00 0.00 43.80 4.85
4035 4792 1.202348 AGATCTCGCGACCAACTCATG 60.202 52.381 3.71 0.00 0.00 3.07
4036 4793 1.107114 AGATCTCGCGACCAACTCAT 58.893 50.000 3.71 0.00 0.00 2.90
4037 4794 0.888619 AAGATCTCGCGACCAACTCA 59.111 50.000 3.71 0.00 0.00 3.41
4038 4795 2.846039 TAAGATCTCGCGACCAACTC 57.154 50.000 3.71 0.00 0.00 3.01
4039 4796 2.223829 CCATAAGATCTCGCGACCAACT 60.224 50.000 3.71 0.00 0.00 3.16
4040 4797 2.128035 CCATAAGATCTCGCGACCAAC 58.872 52.381 3.71 0.00 0.00 3.77
4041 4798 1.068588 CCCATAAGATCTCGCGACCAA 59.931 52.381 3.71 0.00 0.00 3.67
4042 4799 0.673985 CCCATAAGATCTCGCGACCA 59.326 55.000 3.71 0.00 0.00 4.02
4043 4800 0.674534 ACCCATAAGATCTCGCGACC 59.325 55.000 3.71 0.00 0.00 4.79
4044 4801 2.510768 AACCCATAAGATCTCGCGAC 57.489 50.000 3.71 0.00 0.00 5.19
4045 4802 2.429250 TGAAACCCATAAGATCTCGCGA 59.571 45.455 9.26 9.26 0.00 5.87
4046 4803 2.540101 GTGAAACCCATAAGATCTCGCG 59.460 50.000 0.00 0.00 0.00 5.87
4061 4818 3.039011 TGGGATAGGCTAGAGGTGAAAC 58.961 50.000 0.00 0.00 0.00 2.78
4062 4819 3.414759 TGGGATAGGCTAGAGGTGAAA 57.585 47.619 0.00 0.00 0.00 2.69
4063 4820 3.039011 GTTGGGATAGGCTAGAGGTGAA 58.961 50.000 0.00 0.00 0.00 3.18
4064 4821 2.247635 AGTTGGGATAGGCTAGAGGTGA 59.752 50.000 0.00 0.00 0.00 4.02
4065 4822 2.683768 AGTTGGGATAGGCTAGAGGTG 58.316 52.381 0.00 0.00 0.00 4.00
4066 4823 3.041946 CAAGTTGGGATAGGCTAGAGGT 58.958 50.000 0.00 0.00 0.00 3.85
4067 4824 3.041946 ACAAGTTGGGATAGGCTAGAGG 58.958 50.000 7.96 0.00 0.00 3.69
4068 4825 4.762289 AACAAGTTGGGATAGGCTAGAG 57.238 45.455 7.96 0.00 0.00 2.43
4069 4826 4.843728 CAAACAAGTTGGGATAGGCTAGA 58.156 43.478 7.96 0.00 33.18 2.43
4081 4838 3.636764 AGCCTTTAGTCCCAAACAAGTTG 59.363 43.478 0.00 0.00 36.94 3.16
4082 4839 3.910989 AGCCTTTAGTCCCAAACAAGTT 58.089 40.909 0.00 0.00 0.00 2.66
4083 4840 3.595190 AGCCTTTAGTCCCAAACAAGT 57.405 42.857 0.00 0.00 0.00 3.16
4084 4841 4.099419 ACAAAGCCTTTAGTCCCAAACAAG 59.901 41.667 0.00 0.00 0.00 3.16
4085 4842 4.027437 ACAAAGCCTTTAGTCCCAAACAA 58.973 39.130 0.00 0.00 0.00 2.83
4086 4843 3.637769 ACAAAGCCTTTAGTCCCAAACA 58.362 40.909 0.00 0.00 0.00 2.83
4087 4844 4.142026 ACAACAAAGCCTTTAGTCCCAAAC 60.142 41.667 0.00 0.00 0.00 2.93
4088 4845 4.027437 ACAACAAAGCCTTTAGTCCCAAA 58.973 39.130 0.00 0.00 0.00 3.28
4089 4846 3.637769 ACAACAAAGCCTTTAGTCCCAA 58.362 40.909 0.00 0.00 0.00 4.12
4090 4847 3.306472 ACAACAAAGCCTTTAGTCCCA 57.694 42.857 0.00 0.00 0.00 4.37
4091 4848 3.383505 ACAACAACAAAGCCTTTAGTCCC 59.616 43.478 0.00 0.00 0.00 4.46
4092 4849 4.649088 ACAACAACAAAGCCTTTAGTCC 57.351 40.909 0.00 0.00 0.00 3.85
4093 4850 5.407502 ACAACAACAACAAAGCCTTTAGTC 58.592 37.500 0.00 0.00 0.00 2.59
4094 4851 5.400066 ACAACAACAACAAAGCCTTTAGT 57.600 34.783 0.00 0.00 0.00 2.24
4095 4852 5.637387 ACAACAACAACAACAAAGCCTTTAG 59.363 36.000 0.00 0.00 0.00 1.85
4096 4853 5.542779 ACAACAACAACAACAAAGCCTTTA 58.457 33.333 0.00 0.00 0.00 1.85
4097 4854 4.384940 ACAACAACAACAACAAAGCCTTT 58.615 34.783 0.00 0.00 0.00 3.11
4098 4855 4.001618 ACAACAACAACAACAAAGCCTT 57.998 36.364 0.00 0.00 0.00 4.35
4099 4856 3.676291 ACAACAACAACAACAAAGCCT 57.324 38.095 0.00 0.00 0.00 4.58
4100 4857 3.496507 ACAACAACAACAACAACAAAGCC 59.503 39.130 0.00 0.00 0.00 4.35
4101 4858 4.723879 ACAACAACAACAACAACAAAGC 57.276 36.364 0.00 0.00 0.00 3.51
4102 4859 6.042144 ACAACAACAACAACAACAACAAAG 57.958 33.333 0.00 0.00 0.00 2.77
4103 4860 6.128282 ACAACAACAACAACAACAACAACAAA 60.128 30.769 0.00 0.00 0.00 2.83
4104 4861 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
4105 4862 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
4106 4863 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
4107 4864 6.291637 CGTAACAACAACAACAACAACAACAA 60.292 34.615 0.00 0.00 0.00 2.83
4108 4865 5.173312 CGTAACAACAACAACAACAACAACA 59.827 36.000 0.00 0.00 0.00 3.33
4109 4866 5.591362 CGTAACAACAACAACAACAACAAC 58.409 37.500 0.00 0.00 0.00 3.32
4110 4867 4.148348 GCGTAACAACAACAACAACAACAA 59.852 37.500 0.00 0.00 0.00 2.83
4111 4868 3.669122 GCGTAACAACAACAACAACAACA 59.331 39.130 0.00 0.00 0.00 3.33
4112 4869 3.669122 TGCGTAACAACAACAACAACAAC 59.331 39.130 0.00 0.00 0.00 3.32
4113 4870 3.897325 TGCGTAACAACAACAACAACAA 58.103 36.364 0.00 0.00 0.00 2.83
4114 4871 3.554259 TGCGTAACAACAACAACAACA 57.446 38.095 0.00 0.00 0.00 3.33
4115 4872 5.164041 ACAAATGCGTAACAACAACAACAAC 60.164 36.000 0.00 0.00 0.00 3.32
4116 4873 4.923871 ACAAATGCGTAACAACAACAACAA 59.076 33.333 0.00 0.00 0.00 2.83
4117 4874 4.486090 ACAAATGCGTAACAACAACAACA 58.514 34.783 0.00 0.00 0.00 3.33
4118 4875 5.443142 AACAAATGCGTAACAACAACAAC 57.557 34.783 0.00 0.00 0.00 3.32
4119 4876 6.323266 AGTAACAAATGCGTAACAACAACAA 58.677 32.000 0.00 0.00 0.00 2.83
4120 4877 5.881447 AGTAACAAATGCGTAACAACAACA 58.119 33.333 0.00 0.00 0.00 3.33
4121 4878 6.251801 ACAAGTAACAAATGCGTAACAACAAC 59.748 34.615 0.00 0.00 0.00 3.32
4122 4879 6.323266 ACAAGTAACAAATGCGTAACAACAA 58.677 32.000 0.00 0.00 0.00 2.83
4123 4880 5.881447 ACAAGTAACAAATGCGTAACAACA 58.119 33.333 0.00 0.00 0.00 3.33
4124 4881 7.111041 CAGTACAAGTAACAAATGCGTAACAAC 59.889 37.037 0.00 0.00 0.00 3.32
4125 4882 7.127042 CAGTACAAGTAACAAATGCGTAACAA 58.873 34.615 0.00 0.00 0.00 2.83
4126 4883 6.258287 ACAGTACAAGTAACAAATGCGTAACA 59.742 34.615 0.00 0.00 0.00 2.41
4127 4884 6.652245 ACAGTACAAGTAACAAATGCGTAAC 58.348 36.000 0.00 0.00 0.00 2.50
4128 4885 6.847956 ACAGTACAAGTAACAAATGCGTAA 57.152 33.333 0.00 0.00 0.00 3.18
4129 4886 6.479331 TCAACAGTACAAGTAACAAATGCGTA 59.521 34.615 0.00 0.00 0.00 4.42
4582 5340 2.103094 TCAATACTGCTCGAGGGATTGG 59.897 50.000 20.17 7.72 33.18 3.16
4632 5390 4.102210 ACCAGACAGGACATCATTCTATGG 59.898 45.833 0.00 0.00 41.22 2.74
4713 5471 3.433319 CTAAGCGAGCGCCTAGGA 58.567 61.111 14.75 0.00 43.17 2.94
4840 5598 2.496899 ACATACTTGCTGGGAAGGTG 57.503 50.000 6.78 7.20 0.00 4.00
4979 5737 2.225117 ACACAGCAAATTAGGGAGCCTT 60.225 45.455 0.00 0.00 34.61 4.35
5014 5772 4.327982 TGGATACAGCTGCATTCTACTC 57.672 45.455 15.27 0.00 46.17 2.59
5071 5830 2.158827 TCTCTTGTTGGCTGCAGTACAA 60.159 45.455 16.64 19.80 0.00 2.41
5405 6166 4.226168 CCTAGAAGAAACAGGACCCTGAAT 59.774 45.833 21.84 10.05 46.30 2.57
5670 6431 3.431346 GGGAGGAGTTAACCGGTGATAAC 60.431 52.174 17.79 17.79 34.73 1.89
5895 6657 9.903682 ATTATTTATGTAGAATCATGCTTGTGC 57.096 29.630 0.00 0.00 40.20 4.57
6274 7898 5.491982 AGCCAGTAAGGTAGAACATCAAAG 58.508 41.667 0.00 0.00 40.61 2.77
6354 7982 3.340814 TGAGAGCAATGTTCTTCCTCC 57.659 47.619 0.22 0.00 0.00 4.30
6556 8184 2.290916 ACAGATACGTAGAGTGCCATCG 59.709 50.000 0.08 0.00 0.00 3.84
6622 8250 6.330004 TCAAGCTGTTTCAATATCTTTGCA 57.670 33.333 0.00 0.00 0.00 4.08
6711 8339 6.388100 AGAAATAGAATCCTCAACATCCAGGA 59.612 38.462 0.00 0.00 43.20 3.86
6849 8477 8.609617 TTCAGAGGATGATTTACTTTCTAGGA 57.390 34.615 0.00 0.00 37.89 2.94
6850 8478 9.844257 AATTCAGAGGATGATTTACTTTCTAGG 57.156 33.333 0.00 0.00 37.89 3.02
6880 8508 2.158127 TGGTCCTACCTTGGGTGAAGTA 60.158 50.000 0.00 0.00 39.58 2.24
6984 8613 2.696187 GTCCACCTCCAGAGAATCCTAC 59.304 54.545 0.00 0.00 33.66 3.18
7037 8666 3.248024 TGTTCCTGGATTGGTGAGTAGT 58.752 45.455 0.00 0.00 0.00 2.73
7060 8689 2.494059 TGTTCCAGAGTTGTTAGCAGC 58.506 47.619 0.00 0.00 0.00 5.25
7508 9141 0.033366 GGAACCAAAAATGGCACGCT 59.967 50.000 0.00 0.00 0.00 5.07
7509 9142 0.249657 TGGAACCAAAAATGGCACGC 60.250 50.000 0.00 0.00 0.00 5.34
7510 9143 1.068434 AGTGGAACCAAAAATGGCACG 59.932 47.619 0.00 0.00 37.80 5.34
7511 9144 2.908688 AGTGGAACCAAAAATGGCAC 57.091 45.000 0.00 0.00 37.80 5.01
7807 9440 4.395625 ACTTAAGGTTGTAGGCTTGGAAC 58.604 43.478 7.53 0.00 0.00 3.62
7877 9510 6.505044 AATGGGTTGTTCGGTTTATTAGAC 57.495 37.500 0.00 0.00 0.00 2.59
7885 9518 3.449377 AGACAAAAATGGGTTGTTCGGTT 59.551 39.130 0.00 0.00 39.29 4.44
8233 9866 2.793831 CCAAATGGTAAGCTCCCCG 58.206 57.895 0.00 0.00 0.00 5.73
8459 10104 0.687354 AGGGGCTAATGGACATAGCG 59.313 55.000 0.00 0.00 37.69 4.26
8507 10152 4.442706 GTGGATCTGGTATTGTAGGTGTG 58.557 47.826 0.00 0.00 0.00 3.82
8615 10260 1.551883 GGGGCCGTAACAGAAAGAGTA 59.448 52.381 0.00 0.00 0.00 2.59
8828 10473 2.104622 TCTGCCAGACTTGTCATTGTCA 59.895 45.455 3.49 0.00 35.81 3.58
9170 10820 5.246203 AGCAGTAACAAGAACAGATACCTCA 59.754 40.000 0.00 0.00 0.00 3.86
9172 10822 5.746990 AGCAGTAACAAGAACAGATACCT 57.253 39.130 0.00 0.00 0.00 3.08
9195 10845 3.928754 AGGTGCAAGGATCATAGGACTA 58.071 45.455 0.00 0.00 0.00 2.59
9348 10998 9.050601 GTTAGATCAATCTCATTAAACTGGGAG 57.949 37.037 0.00 0.00 38.32 4.30
9381 11031 2.418628 ACGAACAATACAATTGGCGGAG 59.581 45.455 10.83 0.00 0.00 4.63
9462 11112 9.969001 ACAGGCAATTACCTAACTAATCTAAAA 57.031 29.630 0.00 0.00 38.26 1.52
9463 11113 9.391006 CACAGGCAATTACCTAACTAATCTAAA 57.609 33.333 0.00 0.00 38.26 1.85
9464 11114 8.764558 TCACAGGCAATTACCTAACTAATCTAA 58.235 33.333 0.00 0.00 38.26 2.10
9465 11115 8.313944 TCACAGGCAATTACCTAACTAATCTA 57.686 34.615 0.00 0.00 38.26 1.98
9466 11116 7.195374 TCACAGGCAATTACCTAACTAATCT 57.805 36.000 0.00 0.00 38.26 2.40
9467 11117 8.451908 AATCACAGGCAATTACCTAACTAATC 57.548 34.615 0.00 0.00 38.26 1.75
9468 11118 8.686334 CAAATCACAGGCAATTACCTAACTAAT 58.314 33.333 0.00 0.00 38.26 1.73
9469 11119 7.362574 GCAAATCACAGGCAATTACCTAACTAA 60.363 37.037 0.00 0.00 38.26 2.24
9470 11120 6.094881 GCAAATCACAGGCAATTACCTAACTA 59.905 38.462 0.00 0.00 38.26 2.24
9471 11121 5.105756 GCAAATCACAGGCAATTACCTAACT 60.106 40.000 0.00 0.00 38.26 2.24
9472 11122 5.102313 GCAAATCACAGGCAATTACCTAAC 58.898 41.667 0.00 0.00 38.26 2.34
9600 11280 5.388654 TCTTTTCTTTGATGCTTTCCCTCT 58.611 37.500 0.00 0.00 0.00 3.69
9651 11410 5.269505 AGATTAGGCTAGTGCACAGTTAG 57.730 43.478 21.04 13.11 41.91 2.34
9786 11545 7.974501 ACACTTCTTTTCTTATCGATCGTATGT 59.025 33.333 15.94 2.85 0.00 2.29
9851 11610 7.678947 AAGTGGAATGATTCTTCTACACTTG 57.321 36.000 19.06 0.00 43.73 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.