Multiple sequence alignment - TraesCS5D01G122400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G122400 chr5D 100.000 5044 0 0 1 5044 177169193 177174236 0.000000e+00 9315.0
1 TraesCS5D01G122400 chr5D 88.462 104 4 3 4738 4838 496271798 496271896 8.870000e-23 119.0
2 TraesCS5D01G122400 chr5A 96.994 4790 102 11 1 4750 180991579 180996366 0.000000e+00 8010.0
3 TraesCS5D01G122400 chr5A 88.288 222 19 5 4827 5044 180996363 180996581 5.010000e-65 259.0
4 TraesCS5D01G122400 chr5B 96.259 4811 85 24 1 4751 191958160 191962935 0.000000e+00 7799.0
5 TraesCS5D01G122400 chr5B 91.324 219 16 2 4828 5044 191962935 191963152 3.820000e-76 296.0
6 TraesCS5D01G122400 chr5B 90.722 97 6 1 4745 4838 432174699 432174795 5.300000e-25 126.0
7 TraesCS5D01G122400 chr5B 94.872 39 2 0 4318 4356 191962506 191962468 1.520000e-05 62.1
8 TraesCS5D01G122400 chr2D 81.734 323 46 9 2888 3205 598634698 598634384 1.800000e-64 257.0
9 TraesCS5D01G122400 chr2A 81.481 324 47 10 2888 3206 732564433 732564118 2.330000e-63 254.0
10 TraesCS5D01G122400 chr7B 90.722 97 5 3 4744 4836 687063314 687063410 5.300000e-25 126.0
11 TraesCS5D01G122400 chr3D 92.222 90 4 3 4744 4830 22678507 22678596 1.910000e-24 124.0
12 TraesCS5D01G122400 chr3B 90.526 95 6 3 4742 4833 807575518 807575424 6.860000e-24 122.0
13 TraesCS5D01G122400 chr3B 87.500 104 9 2 4748 4847 434307605 434307502 3.190000e-22 117.0
14 TraesCS5D01G122400 chr3B 92.857 42 3 0 4315 4356 172005846 172005805 1.520000e-05 62.1
15 TraesCS5D01G122400 chr6B 89.583 96 8 2 4748 4842 617049608 617049702 2.470000e-23 121.0
16 TraesCS5D01G122400 chr6A 87.736 106 6 7 4748 4848 447160938 447160835 3.190000e-22 117.0
17 TraesCS5D01G122400 chr7D 86.364 110 9 6 4739 4844 4013610 4013503 1.150000e-21 115.0
18 TraesCS5D01G122400 chr7A 89.796 49 5 0 4316 4364 724263325 724263277 4.220000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G122400 chr5D 177169193 177174236 5043 False 9315.0 9315 100.0000 1 5044 1 chr5D.!!$F1 5043
1 TraesCS5D01G122400 chr5A 180991579 180996581 5002 False 4134.5 8010 92.6410 1 5044 2 chr5A.!!$F1 5043
2 TraesCS5D01G122400 chr5B 191958160 191963152 4992 False 4047.5 7799 93.7915 1 5044 2 chr5B.!!$F2 5043

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
143 145 0.883153 TCGATTCGTCTTCGTGGGAA 59.117 50.000 5.89 0.0 37.82 3.97 F
174 177 1.206849 CACCTTTCTGCTCTCCTCTCC 59.793 57.143 0.00 0.0 0.00 3.71 F
1487 1521 1.895798 TCGAGTTCATCTGAAGCAGGT 59.104 47.619 0.00 0.0 34.27 4.00 F
2762 2796 1.936547 GAGCTACCATTGCACTACTGC 59.063 52.381 0.00 0.0 44.52 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2110 2144 0.908198 ATTCTGGGAGCACTCACCTC 59.092 55.0 0.00 0.0 30.24 3.85 R
2355 2389 5.464057 TCAAAGCAAACAAGCAATCTGAATG 59.536 36.0 0.00 0.0 36.85 2.67 R
3397 3437 1.109323 ACAACAAGTTGAGGCAGCCC 61.109 55.0 18.90 0.0 42.93 5.19 R
4138 4180 0.917533 ATCTGCATGCTCCTCCAAGT 59.082 50.0 20.33 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
143 145 0.883153 TCGATTCGTCTTCGTGGGAA 59.117 50.000 5.89 0.00 37.82 3.97
174 177 1.206849 CACCTTTCTGCTCTCCTCTCC 59.793 57.143 0.00 0.00 0.00 3.71
520 549 7.365840 TGGAACGCAAAAAGTTGTTATTTTT 57.634 28.000 0.00 0.00 39.73 1.94
605 634 2.564975 GCTTGCGTTGCATCTGCT 59.435 55.556 3.53 0.00 38.76 4.24
759 788 4.021719 AGGAACACTTCTGATTGCATTTGG 60.022 41.667 0.00 0.00 0.00 3.28
1487 1521 1.895798 TCGAGTTCATCTGAAGCAGGT 59.104 47.619 0.00 0.00 34.27 4.00
2355 2389 5.182001 ACTGTGTATCTTGCAGAATTGGTTC 59.818 40.000 0.00 0.00 34.60 3.62
2413 2447 8.962679 GGATATTGAGTACCTGATTAGTAGGAG 58.037 40.741 0.00 0.00 38.71 3.69
2722 2756 6.650807 TCAGTTTGCTAATCTAAACTCACCTG 59.349 38.462 0.00 0.00 43.23 4.00
2762 2796 1.936547 GAGCTACCATTGCACTACTGC 59.063 52.381 0.00 0.00 44.52 4.40
2790 2824 4.251268 GGCTCGGTTTATGACAGTAGTTT 58.749 43.478 0.00 0.00 0.00 2.66
2955 2991 3.383185 TCAACTTTAAGGGTGCCACTTTG 59.617 43.478 0.00 0.00 0.00 2.77
2980 3020 6.586844 GGAGAGGCGTATTTAGTAACATCATC 59.413 42.308 0.00 0.00 0.00 2.92
2999 3039 6.397831 TCATCGTACGGTTTTTCTATGTTG 57.602 37.500 16.52 0.00 0.00 3.33
3153 3193 7.096551 GTGATCTTAAGCCAGAGAATATCCTC 58.903 42.308 0.00 0.00 0.00 3.71
3397 3437 3.941704 AGCCTAAATCTTCCCTGAAGG 57.058 47.619 4.16 0.00 39.82 3.46
3489 3529 3.765381 TGCACCAGAAATCATCAAAGGA 58.235 40.909 0.00 0.00 0.00 3.36
3534 3574 0.812549 GGTGGACGTTTGGTGTGTTT 59.187 50.000 0.00 0.00 0.00 2.83
3547 3587 7.253618 CGTTTGGTGTGTTTCTTTATGAACTTG 60.254 37.037 0.00 0.00 33.88 3.16
4138 4180 3.133901 TCTTCCTATTGTGCAGCCGAATA 59.866 43.478 0.00 0.00 0.00 1.75
4251 4293 5.406780 CACTGATGTTTCACCTACAAGACTC 59.593 44.000 0.00 0.00 0.00 3.36
4280 4322 7.281100 ACTTCTGTGAAAGGAACTCTTACAAAG 59.719 37.037 0.00 0.00 38.49 2.77
4286 4328 7.226720 GTGAAAGGAACTCTTACAAAGACATCA 59.773 37.037 0.00 0.00 38.49 3.07
4316 4358 4.736611 ACTCCATATACTCCCTCCGTTA 57.263 45.455 0.00 0.00 0.00 3.18
4318 4360 5.461327 ACTCCATATACTCCCTCCGTTAAA 58.539 41.667 0.00 0.00 0.00 1.52
4347 4413 4.911514 AACGCCTTACAAAAGTGAACAT 57.088 36.364 0.00 0.00 0.00 2.71
4484 4550 4.460382 CCCTGCAATGTGTATCTTTGTCTT 59.540 41.667 0.00 0.00 34.83 3.01
4671 4738 2.871633 TGCACGATTTATGATGCGTCAT 59.128 40.909 24.19 24.19 46.54 3.06
4686 4753 3.490896 TGCGTCATATTTCGAGAAGATGC 59.509 43.478 11.29 11.29 38.22 3.91
4751 4818 3.532542 GTGAGGGTTATGCCTTGTACTC 58.467 50.000 0.00 0.00 37.43 2.59
4752 4819 2.504175 TGAGGGTTATGCCTTGTACTCC 59.496 50.000 0.00 0.00 37.43 3.85
4753 4820 2.504175 GAGGGTTATGCCTTGTACTCCA 59.496 50.000 0.00 0.00 37.43 3.86
4754 4821 3.123273 AGGGTTATGCCTTGTACTCCAT 58.877 45.455 0.00 0.00 37.43 3.41
4755 4822 3.136626 AGGGTTATGCCTTGTACTCCATC 59.863 47.826 0.00 0.00 37.43 3.51
4756 4823 3.477530 GGTTATGCCTTGTACTCCATCC 58.522 50.000 0.00 0.00 0.00 3.51
4757 4824 3.131396 GTTATGCCTTGTACTCCATCCG 58.869 50.000 0.00 0.00 0.00 4.18
4758 4825 1.204146 ATGCCTTGTACTCCATCCGT 58.796 50.000 0.00 0.00 0.00 4.69
4759 4826 1.855295 TGCCTTGTACTCCATCCGTA 58.145 50.000 0.00 0.00 0.00 4.02
4760 4827 2.181125 TGCCTTGTACTCCATCCGTAA 58.819 47.619 0.00 0.00 0.00 3.18
4761 4828 2.568062 TGCCTTGTACTCCATCCGTAAA 59.432 45.455 0.00 0.00 0.00 2.01
4762 4829 2.934553 GCCTTGTACTCCATCCGTAAAC 59.065 50.000 0.00 0.00 0.00 2.01
4763 4830 3.369157 GCCTTGTACTCCATCCGTAAACT 60.369 47.826 0.00 0.00 0.00 2.66
4764 4831 4.142093 GCCTTGTACTCCATCCGTAAACTA 60.142 45.833 0.00 0.00 0.00 2.24
4765 4832 5.625197 GCCTTGTACTCCATCCGTAAACTAA 60.625 44.000 0.00 0.00 0.00 2.24
4766 4833 6.579865 CCTTGTACTCCATCCGTAAACTAAT 58.420 40.000 0.00 0.00 0.00 1.73
4767 4834 7.685155 GCCTTGTACTCCATCCGTAAACTAATA 60.685 40.741 0.00 0.00 0.00 0.98
4768 4835 8.365647 CCTTGTACTCCATCCGTAAACTAATAT 58.634 37.037 0.00 0.00 0.00 1.28
4774 4841 8.305317 ACTCCATCCGTAAACTAATATAAGAGC 58.695 37.037 0.00 0.00 0.00 4.09
4775 4842 7.310664 TCCATCCGTAAACTAATATAAGAGCG 58.689 38.462 0.00 0.00 0.00 5.03
4776 4843 7.040201 TCCATCCGTAAACTAATATAAGAGCGT 60.040 37.037 0.00 0.00 0.00 5.07
4777 4844 7.597743 CCATCCGTAAACTAATATAAGAGCGTT 59.402 37.037 0.00 0.00 0.00 4.84
4778 4845 8.975439 CATCCGTAAACTAATATAAGAGCGTTT 58.025 33.333 0.00 0.00 0.00 3.60
4780 4847 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
4781 4848 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
4790 4857 9.998106 AATATAAGAGCGTTTAGACCATTACAT 57.002 29.630 0.00 0.00 0.00 2.29
4791 4858 9.998106 ATATAAGAGCGTTTAGACCATTACATT 57.002 29.630 0.00 0.00 0.00 2.71
4793 4860 7.772332 AAGAGCGTTTAGACCATTACATTAG 57.228 36.000 0.00 0.00 0.00 1.73
4794 4861 6.875076 AGAGCGTTTAGACCATTACATTAGT 58.125 36.000 0.00 0.00 0.00 2.24
4795 4862 6.757010 AGAGCGTTTAGACCATTACATTAGTG 59.243 38.462 0.00 0.00 0.00 2.74
4796 4863 6.636705 AGCGTTTAGACCATTACATTAGTGA 58.363 36.000 0.00 0.00 0.00 3.41
4797 4864 7.272978 AGCGTTTAGACCATTACATTAGTGAT 58.727 34.615 0.00 0.00 0.00 3.06
4798 4865 7.438459 AGCGTTTAGACCATTACATTAGTGATC 59.562 37.037 0.00 0.00 0.00 2.92
4799 4866 7.438459 GCGTTTAGACCATTACATTAGTGATCT 59.562 37.037 0.00 0.00 0.00 2.75
4800 4867 9.961265 CGTTTAGACCATTACATTAGTGATCTA 57.039 33.333 0.00 0.00 0.00 1.98
4804 4871 8.873215 AGACCATTACATTAGTGATCTAAACG 57.127 34.615 0.00 0.00 39.23 3.60
4805 4872 7.438459 AGACCATTACATTAGTGATCTAAACGC 59.562 37.037 0.00 0.00 39.23 4.84
4806 4873 7.272978 ACCATTACATTAGTGATCTAAACGCT 58.727 34.615 0.00 0.00 39.23 5.07
4807 4874 7.438459 ACCATTACATTAGTGATCTAAACGCTC 59.562 37.037 0.00 0.00 39.23 5.03
4808 4875 7.653713 CCATTACATTAGTGATCTAAACGCTCT 59.346 37.037 0.00 0.00 39.23 4.09
4809 4876 9.035607 CATTACATTAGTGATCTAAACGCTCTT 57.964 33.333 0.00 0.00 39.23 2.85
4826 4893 9.543783 AAACGCTCTTATATTAGTTTAAGGGAG 57.456 33.333 0.43 0.00 33.49 4.30
4827 4894 8.247666 ACGCTCTTATATTAGTTTAAGGGAGT 57.752 34.615 0.43 0.46 35.11 3.85
4841 4910 7.881751 AGTTTAAGGGAGTACAATGTAAGGTTC 59.118 37.037 0.00 0.00 0.00 3.62
4848 4917 8.674607 GGGAGTACAATGTAAGGTTCATAAAAG 58.325 37.037 0.00 0.00 0.00 2.27
4983 5052 6.182507 ACAAAACATCTCCTTACACACCTA 57.817 37.500 0.00 0.00 0.00 3.08
4993 5062 4.081309 TCCTTACACACCTAGCATTGTACC 60.081 45.833 0.00 0.00 0.00 3.34
4996 5065 3.939066 ACACACCTAGCATTGTACCTTC 58.061 45.455 0.00 0.00 0.00 3.46
5032 5103 1.815003 CCATGTCAAAGGAGCCTCAAC 59.185 52.381 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
143 145 0.853530 AGAAAGGTGAAGGGGTTGCT 59.146 50.000 0.00 0.00 0.00 3.91
174 177 1.457831 CCTCGGGAAGGTAGGGAGG 60.458 68.421 0.00 0.00 40.67 4.30
392 420 3.374745 CTCGACAGCAACAGCAAATTTT 58.625 40.909 0.00 0.00 0.00 1.82
520 549 0.551624 AAATTTCGGGAGGGAGGGGA 60.552 55.000 0.00 0.00 0.00 4.81
605 634 3.760151 CACATTTCAGCTCAATTCTCCCA 59.240 43.478 0.00 0.00 0.00 4.37
759 788 5.106237 ACTGATAAGAGTCCACGAAGTACAC 60.106 44.000 0.00 0.00 41.61 2.90
822 855 6.403200 GGCAATAGCAACATTTCTCGAAACTA 60.403 38.462 0.00 0.00 44.61 2.24
2110 2144 0.908198 ATTCTGGGAGCACTCACCTC 59.092 55.000 0.00 0.00 30.24 3.85
2355 2389 5.464057 TCAAAGCAAACAAGCAATCTGAATG 59.536 36.000 0.00 0.00 36.85 2.67
2722 2756 4.386867 TCGGTCAGAGATTGTAATCACC 57.613 45.455 7.30 4.98 37.89 4.02
2762 2796 2.746904 TGTCATAAACCGAGCCAACATG 59.253 45.455 0.00 0.00 0.00 3.21
2790 2824 5.549742 AGCAGGAAATTTGGAACATCAAA 57.450 34.783 0.00 0.00 39.30 2.69
2955 2991 5.839621 TGATGTTACTAAATACGCCTCTCC 58.160 41.667 0.00 0.00 0.00 3.71
2980 3020 9.464248 GTTATTACAACATAGAAAAACCGTACG 57.536 33.333 8.69 8.69 0.00 3.67
2999 3039 7.193595 ACACAAGTGCAAAACAGAGTTATTAC 58.806 34.615 0.00 0.00 0.00 1.89
3153 3193 2.104132 TGACCATCATCGCGGACG 59.896 61.111 6.13 0.00 42.01 4.79
3397 3437 1.109323 ACAACAAGTTGAGGCAGCCC 61.109 55.000 18.90 0.00 42.93 5.19
3489 3529 1.610673 AGCACTCCCGTGACCATCT 60.611 57.895 0.00 0.00 43.97 2.90
3534 3574 8.038944 GTCCTACCATACACAAGTTCATAAAGA 58.961 37.037 0.00 0.00 0.00 2.52
3965 4005 1.064003 ATGTACAGACAGCCCCAACA 58.936 50.000 0.33 0.00 39.50 3.33
4138 4180 0.917533 ATCTGCATGCTCCTCCAAGT 59.082 50.000 20.33 0.00 0.00 3.16
4251 4293 3.060602 GAGTTCCTTTCACAGAAGTCCG 58.939 50.000 0.00 0.00 36.75 4.79
4286 4328 8.661345 GGAGGGAGTATATGGAGTAAGAAAAAT 58.339 37.037 0.00 0.00 0.00 1.82
4316 4358 7.434013 CACTTTTGTAAGGCGTTTTAGACATTT 59.566 33.333 0.00 0.00 35.61 2.32
4318 4360 6.261381 TCACTTTTGTAAGGCGTTTTAGACAT 59.739 34.615 0.00 0.00 35.61 3.06
4645 4712 3.720818 CGCATCATAAATCGTGCAAACTC 59.279 43.478 0.00 0.00 37.44 3.01
4671 4738 3.118920 TGTTCCCGCATCTTCTCGAAATA 60.119 43.478 0.00 0.00 0.00 1.40
4686 4753 4.023279 TGAGTTCAAAATCACATGTTCCCG 60.023 41.667 0.00 0.00 0.00 5.14
4722 4789 1.747206 GCATAACCCTCACCGAGCATT 60.747 52.381 0.00 0.00 0.00 3.56
4751 4818 7.088905 ACGCTCTTATATTAGTTTACGGATGG 58.911 38.462 0.00 0.00 0.00 3.51
4752 4819 8.516811 AACGCTCTTATATTAGTTTACGGATG 57.483 34.615 0.00 0.00 0.00 3.51
4754 4821 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
4755 4822 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
4764 4831 9.998106 ATGTAATGGTCTAAACGCTCTTATATT 57.002 29.630 0.00 0.00 0.00 1.28
4765 4832 9.998106 AATGTAATGGTCTAAACGCTCTTATAT 57.002 29.630 0.00 0.00 0.00 0.86
4767 4834 9.477484 CTAATGTAATGGTCTAAACGCTCTTAT 57.523 33.333 0.00 0.00 0.00 1.73
4768 4835 8.472413 ACTAATGTAATGGTCTAAACGCTCTTA 58.528 33.333 0.00 0.00 0.00 2.10
4769 4836 7.277981 CACTAATGTAATGGTCTAAACGCTCTT 59.722 37.037 0.00 0.00 0.00 2.85
4770 4837 6.757010 CACTAATGTAATGGTCTAAACGCTCT 59.243 38.462 0.00 0.00 0.00 4.09
4771 4838 6.755141 TCACTAATGTAATGGTCTAAACGCTC 59.245 38.462 0.00 0.00 0.00 5.03
4772 4839 6.636705 TCACTAATGTAATGGTCTAAACGCT 58.363 36.000 0.00 0.00 0.00 5.07
4773 4840 6.897259 TCACTAATGTAATGGTCTAAACGC 57.103 37.500 0.00 0.00 0.00 4.84
4774 4841 8.873215 AGATCACTAATGTAATGGTCTAAACG 57.127 34.615 0.00 0.00 31.95 3.60
4778 4845 9.961265 CGTTTAGATCACTAATGTAATGGTCTA 57.039 33.333 0.00 0.00 38.23 2.59
4779 4846 7.438459 GCGTTTAGATCACTAATGTAATGGTCT 59.562 37.037 0.00 0.00 38.23 3.85
4780 4847 7.438459 AGCGTTTAGATCACTAATGTAATGGTC 59.562 37.037 0.00 0.00 38.23 4.02
4781 4848 7.272978 AGCGTTTAGATCACTAATGTAATGGT 58.727 34.615 0.00 0.00 38.23 3.55
4782 4849 7.653713 AGAGCGTTTAGATCACTAATGTAATGG 59.346 37.037 0.00 0.00 38.23 3.16
4783 4850 8.581057 AGAGCGTTTAGATCACTAATGTAATG 57.419 34.615 0.00 0.00 38.23 1.90
4800 4867 9.543783 CTCCCTTAAACTAATATAAGAGCGTTT 57.456 33.333 0.00 0.00 32.10 3.60
4801 4868 8.702819 ACTCCCTTAAACTAATATAAGAGCGTT 58.297 33.333 0.00 0.00 32.10 4.84
4802 4869 8.247666 ACTCCCTTAAACTAATATAAGAGCGT 57.752 34.615 0.00 0.00 32.10 5.07
4803 4870 9.623350 GTACTCCCTTAAACTAATATAAGAGCG 57.377 37.037 0.00 0.00 32.10 5.03
4812 4879 9.901172 CCTTACATTGTACTCCCTTAAACTAAT 57.099 33.333 0.00 0.00 0.00 1.73
4813 4880 8.883302 ACCTTACATTGTACTCCCTTAAACTAA 58.117 33.333 0.00 0.00 0.00 2.24
4814 4881 8.439964 ACCTTACATTGTACTCCCTTAAACTA 57.560 34.615 0.00 0.00 0.00 2.24
4815 4882 7.325725 ACCTTACATTGTACTCCCTTAAACT 57.674 36.000 0.00 0.00 0.00 2.66
4816 4883 7.662669 TGAACCTTACATTGTACTCCCTTAAAC 59.337 37.037 0.00 0.00 0.00 2.01
4817 4884 7.747690 TGAACCTTACATTGTACTCCCTTAAA 58.252 34.615 0.00 0.00 0.00 1.52
4818 4885 7.319052 TGAACCTTACATTGTACTCCCTTAA 57.681 36.000 0.00 0.00 0.00 1.85
4819 4886 6.938698 TGAACCTTACATTGTACTCCCTTA 57.061 37.500 0.00 0.00 0.00 2.69
4820 4887 5.836024 TGAACCTTACATTGTACTCCCTT 57.164 39.130 0.00 0.00 0.00 3.95
4821 4888 7.504926 TTATGAACCTTACATTGTACTCCCT 57.495 36.000 0.00 0.00 0.00 4.20
4822 4889 8.570068 TTTTATGAACCTTACATTGTACTCCC 57.430 34.615 0.00 0.00 0.00 4.30
4823 4890 9.227777 ACTTTTATGAACCTTACATTGTACTCC 57.772 33.333 0.00 0.00 0.00 3.85
4977 5046 3.583086 ACAGAAGGTACAATGCTAGGTGT 59.417 43.478 0.00 0.00 0.00 4.16
4983 5052 3.146104 AGCAACAGAAGGTACAATGCT 57.854 42.857 0.00 0.00 37.80 3.79
4993 5062 3.521560 TGGCGATTAGTAGCAACAGAAG 58.478 45.455 0.00 0.00 34.54 2.85
4996 5065 3.198068 ACATGGCGATTAGTAGCAACAG 58.802 45.455 0.00 0.00 34.54 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.