Multiple sequence alignment - TraesCS5D01G121500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G121500 chr5D 100.000 5875 0 0 1 5875 174801205 174795331 0.000000e+00 10850.0
1 TraesCS5D01G121500 chr5B 94.099 2559 116 14 40 2576 182988786 182991331 0.000000e+00 3856.0
2 TraesCS5D01G121500 chr5B 92.574 1387 74 14 2863 4224 37595304 37593922 0.000000e+00 1964.0
3 TraesCS5D01G121500 chr5B 94.240 1059 47 7 4745 5792 182991977 182993032 0.000000e+00 1605.0
4 TraesCS5D01G121500 chr5B 97.838 370 8 0 4276 4645 182991561 182991930 1.790000e-179 640.0
5 TraesCS5D01G121500 chr5B 95.918 245 6 3 2626 2867 182991330 182991573 1.530000e-105 394.0
6 TraesCS5D01G121500 chr5B 97.727 44 0 1 2568 2611 582898573 582898531 2.270000e-09 75.0
7 TraesCS5D01G121500 chr5A 94.035 1995 44 18 618 2576 198653242 198651287 0.000000e+00 2955.0
8 TraesCS5D01G121500 chr5A 94.228 1386 56 9 2868 4230 76961021 76962405 0.000000e+00 2095.0
9 TraesCS5D01G121500 chr5A 96.341 738 24 2 4745 5480 198650663 198649927 0.000000e+00 1210.0
10 TraesCS5D01G121500 chr5A 98.378 370 6 0 4276 4645 198651079 198650710 0.000000e+00 651.0
11 TraesCS5D01G121500 chr5A 93.765 417 13 4 5471 5875 198648994 198648579 1.080000e-171 614.0
12 TraesCS5D01G121500 chr5A 92.083 240 18 1 1 240 198653492 198653254 2.620000e-88 337.0
13 TraesCS5D01G121500 chr5A 94.505 182 7 2 2626 2807 198651288 198651110 1.610000e-70 278.0
14 TraesCS5D01G121500 chr3D 98.472 1374 18 3 2859 4230 173701862 173700490 0.000000e+00 2418.0
15 TraesCS5D01G121500 chr3D 95.105 1287 40 4 2867 4130 580582452 580581166 0.000000e+00 2006.0
16 TraesCS5D01G121500 chr3D 96.491 57 0 1 4218 4274 173700462 173700408 6.270000e-15 93.5
17 TraesCS5D01G121500 chr3D 97.297 37 0 1 2575 2611 13929159 13929194 1.770000e-05 62.1
18 TraesCS5D01G121500 chr7D 96.109 1362 29 7 2867 4204 577987045 577985684 0.000000e+00 2200.0
19 TraesCS5D01G121500 chr7D 95.530 1387 33 5 2867 4230 524542918 524541538 0.000000e+00 2191.0
20 TraesCS5D01G121500 chr7D 95.352 1377 41 4 2877 4230 83459079 83457703 0.000000e+00 2167.0
21 TraesCS5D01G121500 chr2D 95.703 1373 35 12 2866 4215 563096915 563098286 0.000000e+00 2187.0
22 TraesCS5D01G121500 chr2D 99.425 869 5 0 2867 3735 87671658 87672526 0.000000e+00 1578.0
23 TraesCS5D01G121500 chr2D 97.368 38 0 1 2575 2612 383338143 383338107 4.920000e-06 63.9
24 TraesCS5D01G121500 chr2B 94.135 1381 57 7 2868 4225 38260767 38262146 0.000000e+00 2080.0
25 TraesCS5D01G121500 chr1A 92.754 1380 67 11 2869 4225 3921589 3922958 0.000000e+00 1964.0
26 TraesCS5D01G121500 chr1A 94.737 57 1 1 4218 4274 3922991 3923045 2.920000e-13 87.9
27 TraesCS5D01G121500 chr1A 97.917 48 1 0 4227 4274 53446608 53446561 3.770000e-12 84.2
28 TraesCS5D01G121500 chr1A 97.368 38 1 0 2574 2611 25539011 25538974 1.370000e-06 65.8
29 TraesCS5D01G121500 chr1B 93.803 1307 57 12 2865 4148 582541920 582540615 0.000000e+00 1943.0
30 TraesCS5D01G121500 chr1B 90.691 376 33 2 240 613 504116115 504116490 3.160000e-137 499.0
31 TraesCS5D01G121500 chr1B 91.081 370 30 3 246 613 352332316 352331948 1.140000e-136 497.0
32 TraesCS5D01G121500 chr1B 96.491 57 0 1 4218 4274 41989774 41989720 6.270000e-15 93.5
33 TraesCS5D01G121500 chr1B 97.917 48 1 0 4227 4274 661985408 661985455 3.770000e-12 84.2
34 TraesCS5D01G121500 chr6D 95.252 1011 26 3 2868 3857 209621133 209622142 0.000000e+00 1581.0
35 TraesCS5D01G121500 chr6D 91.247 377 28 5 240 613 61601188 61600814 5.250000e-140 508.0
36 TraesCS5D01G121500 chr6D 90.566 53 4 1 2575 2627 29366078 29366027 1.060000e-07 69.4
37 TraesCS5D01G121500 chr4A 91.489 376 30 2 240 613 699175015 699175390 3.140000e-142 516.0
38 TraesCS5D01G121500 chr3B 91.622 370 29 2 246 613 825271459 825271090 1.460000e-140 510.0
39 TraesCS5D01G121500 chr3B 77.729 229 35 8 9 225 131061492 131061268 6.180000e-25 126.0
40 TraesCS5D01G121500 chr6B 90.957 376 32 2 240 613 692559101 692558726 6.790000e-139 505.0
41 TraesCS5D01G121500 chr6B 97.368 38 0 1 2575 2612 217164589 217164553 4.920000e-06 63.9
42 TraesCS5D01G121500 chr4B 91.081 370 31 2 246 613 424285595 424285226 3.160000e-137 499.0
43 TraesCS5D01G121500 chr4B 92.982 57 2 1 4218 4274 590052346 590052292 1.360000e-11 82.4
44 TraesCS5D01G121500 chr7A 90.836 371 32 2 246 614 10222476 10222106 4.090000e-136 496.0
45 TraesCS5D01G121500 chr3A 94.643 56 1 1 4219 4274 461902605 461902552 1.050000e-12 86.1
46 TraesCS5D01G121500 chr3A 97.917 48 1 0 4227 4274 403394245 403394198 3.770000e-12 84.2
47 TraesCS5D01G121500 chr3A 95.000 40 1 1 2568 2607 514095868 514095830 1.770000e-05 62.1
48 TraesCS5D01G121500 chr7B 97.959 49 0 1 4227 4274 728103528 728103576 3.770000e-12 84.2
49 TraesCS5D01G121500 chr1D 97.297 37 1 0 2575 2611 451859088 451859052 4.920000e-06 63.9
50 TraesCS5D01G121500 chr1D 95.000 40 1 1 2572 2611 162713719 162713757 1.770000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G121500 chr5D 174795331 174801205 5874 True 10850.00 10850 100.000000 1 5875 1 chr5D.!!$R1 5874
1 TraesCS5D01G121500 chr5B 37593922 37595304 1382 True 1964.00 1964 92.574000 2863 4224 1 chr5B.!!$R1 1361
2 TraesCS5D01G121500 chr5B 182988786 182993032 4246 False 1623.75 3856 95.523750 40 5792 4 chr5B.!!$F1 5752
3 TraesCS5D01G121500 chr5A 76961021 76962405 1384 False 2095.00 2095 94.228000 2868 4230 1 chr5A.!!$F1 1362
4 TraesCS5D01G121500 chr5A 198648579 198653492 4913 True 1007.50 2955 94.851167 1 5875 6 chr5A.!!$R1 5874
5 TraesCS5D01G121500 chr3D 580581166 580582452 1286 True 2006.00 2006 95.105000 2867 4130 1 chr3D.!!$R1 1263
6 TraesCS5D01G121500 chr3D 173700408 173701862 1454 True 1255.75 2418 97.481500 2859 4274 2 chr3D.!!$R2 1415
7 TraesCS5D01G121500 chr7D 577985684 577987045 1361 True 2200.00 2200 96.109000 2867 4204 1 chr7D.!!$R3 1337
8 TraesCS5D01G121500 chr7D 524541538 524542918 1380 True 2191.00 2191 95.530000 2867 4230 1 chr7D.!!$R2 1363
9 TraesCS5D01G121500 chr7D 83457703 83459079 1376 True 2167.00 2167 95.352000 2877 4230 1 chr7D.!!$R1 1353
10 TraesCS5D01G121500 chr2D 563096915 563098286 1371 False 2187.00 2187 95.703000 2866 4215 1 chr2D.!!$F2 1349
11 TraesCS5D01G121500 chr2D 87671658 87672526 868 False 1578.00 1578 99.425000 2867 3735 1 chr2D.!!$F1 868
12 TraesCS5D01G121500 chr2B 38260767 38262146 1379 False 2080.00 2080 94.135000 2868 4225 1 chr2B.!!$F1 1357
13 TraesCS5D01G121500 chr1A 3921589 3923045 1456 False 1025.95 1964 93.745500 2869 4274 2 chr1A.!!$F1 1405
14 TraesCS5D01G121500 chr1B 582540615 582541920 1305 True 1943.00 1943 93.803000 2865 4148 1 chr1B.!!$R3 1283
15 TraesCS5D01G121500 chr6D 209621133 209622142 1009 False 1581.00 1581 95.252000 2868 3857 1 chr6D.!!$F1 989

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
372 374 0.039256 TTTTCATCTGCTGCGGTTGC 60.039 50.000 13.43 0.00 43.20 4.17 F
382 384 0.317269 CTGCGGTTGCTGTTCTGTTG 60.317 55.000 0.00 0.00 43.34 3.33 F
512 515 0.386858 TCAGTGCTTGTAGTCGTCGC 60.387 55.000 0.00 0.00 0.00 5.19 F
516 519 0.450583 TGCTTGTAGTCGTCGCTAGG 59.549 55.000 0.00 0.00 0.00 3.02 F
1886 1926 0.536460 TCGTTTTCAGGACAAGGGCC 60.536 55.000 0.00 0.00 0.00 5.80 F
3036 3094 1.227674 CGATGAAGGGGTGCTAGCC 60.228 63.158 13.29 3.27 34.31 3.93 F
3461 3580 0.108945 GCCCAAATGAAGAGCACAGC 60.109 55.000 0.00 0.00 0.00 4.40 F
4644 4810 1.139058 GTCAACCAGAGACCACAGTGT 59.861 52.381 0.00 0.00 0.00 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1176 1196 0.161024 GAAGGAAAGCGTTGTCGTCG 59.839 55.000 0.00 0.0 39.49 5.12 R
1183 1203 0.537371 CTGGGGTGAAGGAAAGCGTT 60.537 55.000 0.00 0.0 0.00 4.84 R
1886 1926 5.597813 AGCTTTCAATCAGTTTCTGTACG 57.402 39.130 0.00 0.0 32.61 3.67 R
2205 2245 6.514947 ACAATACAAGCTGCAAAATTCAGAA 58.485 32.000 1.02 0.0 33.54 3.02 R
3247 3306 1.478137 CGATGTTCTAGCGTAGGTGC 58.522 55.000 0.00 0.0 40.22 5.01 R
4661 4827 0.032130 TCAACACACTGCGGTCTCTC 59.968 55.000 0.00 0.0 0.00 3.20 R
4664 4830 0.106708 ATGTCAACACACTGCGGTCT 59.893 50.000 0.00 0.0 34.48 3.85 R
5796 6921 1.073763 AGGCAAGAACCATGTGTGCTA 59.926 47.619 0.00 0.0 28.27 3.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 1.217882 CCGTTCAACCGCATCTATCC 58.782 55.000 0.00 0.00 0.00 2.59
37 38 2.030457 CGTTCAACCGCATCTATCCAAC 59.970 50.000 0.00 0.00 0.00 3.77
38 39 3.006940 GTTCAACCGCATCTATCCAACA 58.993 45.455 0.00 0.00 0.00 3.33
49 50 2.236146 TCTATCCAACAGTTCACGCCAT 59.764 45.455 0.00 0.00 0.00 4.40
242 243 3.202906 TGTGTACAGTCACTCTTTTGGC 58.797 45.455 0.00 0.00 38.90 4.52
244 245 2.171659 TGTACAGTCACTCTTTTGGCCA 59.828 45.455 0.00 0.00 0.00 5.36
254 255 1.133199 TCTTTTGGCCATGTGGAGGTT 60.133 47.619 6.09 0.00 37.39 3.50
258 259 0.105760 TGGCCATGTGGAGGTTTGTT 60.106 50.000 0.00 0.00 37.39 2.83
261 262 2.547855 GGCCATGTGGAGGTTTGTTTTC 60.548 50.000 0.00 0.00 37.39 2.29
262 263 2.102252 GCCATGTGGAGGTTTGTTTTCA 59.898 45.455 2.55 0.00 37.39 2.69
266 267 1.028905 TGGAGGTTTGTTTTCAGCGG 58.971 50.000 0.00 0.00 0.00 5.52
273 274 4.636206 AGGTTTGTTTTCAGCGGATCTATC 59.364 41.667 0.00 0.00 0.00 2.08
280 281 5.607939 TTTCAGCGGATCTATCTTTGGTA 57.392 39.130 0.00 0.00 0.00 3.25
282 283 3.574396 TCAGCGGATCTATCTTTGGTAGG 59.426 47.826 0.00 0.00 0.00 3.18
294 295 2.396590 TTGGTAGGTTTGCTCGGATC 57.603 50.000 0.00 0.00 0.00 3.36
295 296 1.568504 TGGTAGGTTTGCTCGGATCT 58.431 50.000 0.00 0.00 0.00 2.75
299 300 0.173708 AGGTTTGCTCGGATCTCGTC 59.826 55.000 0.00 0.00 40.32 4.20
302 303 1.089112 TTTGCTCGGATCTCGTCGTA 58.911 50.000 0.00 0.00 40.32 3.43
331 332 2.613691 ACGTTTGTGTGTCTTCGAGTT 58.386 42.857 0.00 0.00 0.00 3.01
364 366 9.842775 TTCTGATCTACATTATTTTCATCTGCT 57.157 29.630 0.00 0.00 0.00 4.24
365 367 9.269453 TCTGATCTACATTATTTTCATCTGCTG 57.731 33.333 0.00 0.00 0.00 4.41
372 374 0.039256 TTTTCATCTGCTGCGGTTGC 60.039 50.000 13.43 0.00 43.20 4.17
378 380 2.203195 TGCTGCGGTTGCTGTTCT 60.203 55.556 0.00 0.00 43.34 3.01
381 383 2.024918 CTGCGGTTGCTGTTCTGTT 58.975 52.632 0.00 0.00 43.34 3.16
382 384 0.317269 CTGCGGTTGCTGTTCTGTTG 60.317 55.000 0.00 0.00 43.34 3.33
395 397 2.048597 TGTTGCGCTGGTCCTACG 60.049 61.111 9.73 0.30 0.00 3.51
396 398 2.813908 GTTGCGCTGGTCCTACGG 60.814 66.667 9.73 0.00 0.00 4.02
416 418 0.669625 GGCCTTAGCACGACGACTTT 60.670 55.000 0.00 0.00 42.56 2.66
417 419 1.145803 GCCTTAGCACGACGACTTTT 58.854 50.000 0.00 0.00 39.53 2.27
437 439 7.037438 ACTTTTCGACTGTCTACTACAACAAA 58.963 34.615 6.21 0.00 37.74 2.83
460 463 2.892640 CCGACTCTGGCGATGGAA 59.107 61.111 0.00 0.00 0.00 3.53
512 515 0.386858 TCAGTGCTTGTAGTCGTCGC 60.387 55.000 0.00 0.00 0.00 5.19
516 519 0.450583 TGCTTGTAGTCGTCGCTAGG 59.549 55.000 0.00 0.00 0.00 3.02
519 522 1.736126 CTTGTAGTCGTCGCTAGGTGA 59.264 52.381 0.00 0.00 0.00 4.02
521 524 1.938577 TGTAGTCGTCGCTAGGTGATC 59.061 52.381 0.00 0.00 0.00 2.92
531 534 2.814919 CGCTAGGTGATCTACGGATCTT 59.185 50.000 7.39 0.00 46.18 2.40
580 583 3.684305 TCGTTGTACTGCCATGATTGAAG 59.316 43.478 0.00 0.00 0.00 3.02
591 594 7.390996 ACTGCCATGATTGAAGATGAATAGATC 59.609 37.037 0.00 0.00 0.00 2.75
592 595 7.228590 TGCCATGATTGAAGATGAATAGATCA 58.771 34.615 0.00 0.00 43.67 2.92
593 596 7.390718 TGCCATGATTGAAGATGAATAGATCAG 59.609 37.037 0.00 0.00 42.53 2.90
637 640 2.924290 GCTAAGTGGTACAGAGCTTTCG 59.076 50.000 0.00 0.00 41.80 3.46
686 689 9.973661 TTTTTCAGGGTCTAAATGAATATCTGA 57.026 29.630 0.00 0.00 33.26 3.27
737 743 3.641436 ACCCCAAAACAAGAAATCAGACC 59.359 43.478 0.00 0.00 0.00 3.85
964 972 4.675063 ATCTAACACAATTCCCCCACTT 57.325 40.909 0.00 0.00 0.00 3.16
998 1006 1.596727 GATTCGATCAGAGCAGTTGGC 59.403 52.381 0.00 0.00 45.30 4.52
1175 1195 1.446618 TCGAGGACGACGACGATGA 60.447 57.895 15.32 1.32 43.81 2.92
1176 1196 1.296722 CGAGGACGACGACGATGAC 60.297 63.158 15.32 1.00 42.66 3.06
1177 1197 1.296722 GAGGACGACGACGATGACG 60.297 63.158 15.32 4.49 42.66 4.35
1178 1198 1.690283 GAGGACGACGACGATGACGA 61.690 60.000 15.32 0.00 42.66 4.20
1179 1199 1.579626 GGACGACGACGATGACGAC 60.580 63.158 15.32 2.54 42.66 4.34
1186 1206 1.971336 GACGATGACGACGACAACG 59.029 57.895 23.09 23.09 42.66 4.10
1187 1207 1.984351 GACGATGACGACGACAACGC 61.984 60.000 24.18 15.57 42.06 4.84
1886 1926 0.536460 TCGTTTTCAGGACAAGGGCC 60.536 55.000 0.00 0.00 0.00 5.80
2205 2245 5.881923 TTGTAGTAGACCACTTCCACTTT 57.118 39.130 0.00 0.00 38.80 2.66
2226 2266 7.170320 CACTTTTCTGAATTTTGCAGCTTGTAT 59.830 33.333 0.00 0.00 33.45 2.29
2517 2572 3.006859 GGTAAAAATCCTGCCTTGTGCTT 59.993 43.478 0.00 0.00 42.00 3.91
2578 2633 8.986477 AAACAAGCATGGTTAATCAATTACTC 57.014 30.769 10.31 0.00 33.75 2.59
2579 2634 7.100458 ACAAGCATGGTTAATCAATTACTCC 57.900 36.000 10.31 0.00 0.00 3.85
2580 2635 6.096846 ACAAGCATGGTTAATCAATTACTCCC 59.903 38.462 10.31 0.00 0.00 4.30
2581 2636 6.018433 AGCATGGTTAATCAATTACTCCCT 57.982 37.500 0.00 0.00 0.00 4.20
2582 2637 6.435164 AGCATGGTTAATCAATTACTCCCTT 58.565 36.000 0.00 0.00 0.00 3.95
2583 2638 6.547510 AGCATGGTTAATCAATTACTCCCTTC 59.452 38.462 0.00 0.00 0.00 3.46
2584 2639 6.513393 GCATGGTTAATCAATTACTCCCTTCG 60.513 42.308 0.00 0.00 0.00 3.79
2585 2640 6.057321 TGGTTAATCAATTACTCCCTTCGT 57.943 37.500 0.00 0.00 0.00 3.85
2586 2641 6.110707 TGGTTAATCAATTACTCCCTTCGTC 58.889 40.000 0.00 0.00 0.00 4.20
2587 2642 6.070424 TGGTTAATCAATTACTCCCTTCGTCT 60.070 38.462 0.00 0.00 0.00 4.18
2588 2643 6.479331 GGTTAATCAATTACTCCCTTCGTCTC 59.521 42.308 0.00 0.00 0.00 3.36
2589 2644 5.677319 AATCAATTACTCCCTTCGTCTCA 57.323 39.130 0.00 0.00 0.00 3.27
2590 2645 5.878406 ATCAATTACTCCCTTCGTCTCAT 57.122 39.130 0.00 0.00 0.00 2.90
2591 2646 6.978674 ATCAATTACTCCCTTCGTCTCATA 57.021 37.500 0.00 0.00 0.00 2.15
2592 2647 6.785337 TCAATTACTCCCTTCGTCTCATAA 57.215 37.500 0.00 0.00 0.00 1.90
2593 2648 7.361457 TCAATTACTCCCTTCGTCTCATAAT 57.639 36.000 0.00 0.00 0.00 1.28
2594 2649 8.473358 TCAATTACTCCCTTCGTCTCATAATA 57.527 34.615 0.00 0.00 0.00 0.98
2595 2650 9.090103 TCAATTACTCCCTTCGTCTCATAATAT 57.910 33.333 0.00 0.00 0.00 1.28
2599 2654 9.803507 TTACTCCCTTCGTCTCATAATATAAGA 57.196 33.333 0.00 0.00 0.00 2.10
2600 2655 8.343168 ACTCCCTTCGTCTCATAATATAAGAG 57.657 38.462 0.00 0.00 0.00 2.85
2601 2656 7.094118 ACTCCCTTCGTCTCATAATATAAGAGC 60.094 40.741 0.00 0.00 0.00 4.09
2602 2657 6.030849 CCCTTCGTCTCATAATATAAGAGCG 58.969 44.000 0.00 0.00 33.46 5.03
2603 2658 6.349445 CCCTTCGTCTCATAATATAAGAGCGT 60.349 42.308 0.00 0.00 33.70 5.07
2604 2659 7.085116 CCTTCGTCTCATAATATAAGAGCGTT 58.915 38.462 0.00 0.00 33.70 4.84
2605 2660 7.595502 CCTTCGTCTCATAATATAAGAGCGTTT 59.404 37.037 0.00 0.00 33.70 3.60
2606 2661 8.867112 TTCGTCTCATAATATAAGAGCGTTTT 57.133 30.769 0.00 0.00 33.70 2.43
2607 2662 9.955208 TTCGTCTCATAATATAAGAGCGTTTTA 57.045 29.630 0.00 0.00 33.70 1.52
2620 2675 7.763172 AAGAGCGTTTTATTATGAGACAGAG 57.237 36.000 0.00 0.00 0.00 3.35
2621 2676 6.276847 AGAGCGTTTTATTATGAGACAGAGG 58.723 40.000 0.00 0.00 0.00 3.69
2622 2677 5.360591 AGCGTTTTATTATGAGACAGAGGG 58.639 41.667 0.00 0.00 0.00 4.30
2623 2678 5.128827 AGCGTTTTATTATGAGACAGAGGGA 59.871 40.000 0.00 0.00 0.00 4.20
2624 2679 5.463724 GCGTTTTATTATGAGACAGAGGGAG 59.536 44.000 0.00 0.00 0.00 4.30
2625 2680 6.574350 CGTTTTATTATGAGACAGAGGGAGT 58.426 40.000 0.00 0.00 0.00 3.85
2626 2681 7.683704 GCGTTTTATTATGAGACAGAGGGAGTA 60.684 40.741 0.00 0.00 0.00 2.59
2690 2745 3.181485 TGCCTTTGTAAAAGTGGAAACCG 60.181 43.478 0.00 0.00 0.00 4.44
2756 2811 8.449397 CAAATCTTTAGTGCCATGATATCTAGC 58.551 37.037 3.98 4.91 0.00 3.42
2758 2813 6.695429 TCTTTAGTGCCATGATATCTAGCTG 58.305 40.000 3.98 0.00 0.00 4.24
3036 3094 1.227674 CGATGAAGGGGTGCTAGCC 60.228 63.158 13.29 3.27 34.31 3.93
3461 3580 0.108945 GCCCAAATGAAGAGCACAGC 60.109 55.000 0.00 0.00 0.00 4.40
3857 3983 2.710724 GAAGAACGACCCACACCGCT 62.711 60.000 0.00 0.00 0.00 5.52
4638 4804 2.088104 ACAGAGTCAACCAGAGACCA 57.912 50.000 0.00 0.00 36.68 4.02
4639 4805 1.689273 ACAGAGTCAACCAGAGACCAC 59.311 52.381 0.00 0.00 36.68 4.16
4640 4806 1.688735 CAGAGTCAACCAGAGACCACA 59.311 52.381 0.00 0.00 36.68 4.17
4641 4807 1.967066 AGAGTCAACCAGAGACCACAG 59.033 52.381 0.00 0.00 36.68 3.66
4642 4808 1.689273 GAGTCAACCAGAGACCACAGT 59.311 52.381 0.00 0.00 36.68 3.55
4643 4809 1.414181 AGTCAACCAGAGACCACAGTG 59.586 52.381 0.00 0.00 36.68 3.66
4644 4810 1.139058 GTCAACCAGAGACCACAGTGT 59.861 52.381 0.00 0.00 0.00 3.55
4645 4811 1.837439 TCAACCAGAGACCACAGTGTT 59.163 47.619 0.00 0.00 0.00 3.32
4646 4812 2.238646 TCAACCAGAGACCACAGTGTTT 59.761 45.455 0.00 0.00 0.00 2.83
4647 4813 2.614057 CAACCAGAGACCACAGTGTTTC 59.386 50.000 0.00 0.00 0.00 2.78
4648 4814 2.119495 ACCAGAGACCACAGTGTTTCT 58.881 47.619 4.14 4.14 30.40 2.52
4649 4815 2.505819 ACCAGAGACCACAGTGTTTCTT 59.494 45.455 5.76 0.00 27.98 2.52
4650 4816 3.054361 ACCAGAGACCACAGTGTTTCTTT 60.054 43.478 5.76 0.00 27.98 2.52
4651 4817 3.947834 CCAGAGACCACAGTGTTTCTTTT 59.052 43.478 5.76 0.00 27.98 2.27
4652 4818 4.399303 CCAGAGACCACAGTGTTTCTTTTT 59.601 41.667 5.76 0.00 27.98 1.94
4683 4849 0.106708 AGACCGCAGTGTGTTGACAT 59.893 50.000 2.46 0.00 33.63 3.06
4722 4888 5.452777 GTTCTACTGAGCCATTTTGTTGAC 58.547 41.667 0.00 0.00 0.00 3.18
4723 4889 4.713553 TCTACTGAGCCATTTTGTTGACA 58.286 39.130 0.00 0.00 0.00 3.58
4724 4890 3.996150 ACTGAGCCATTTTGTTGACAG 57.004 42.857 0.00 0.00 0.00 3.51
4725 4891 2.035066 ACTGAGCCATTTTGTTGACAGC 59.965 45.455 0.00 0.00 0.00 4.40
4726 4892 2.030371 TGAGCCATTTTGTTGACAGCA 58.970 42.857 0.00 0.00 0.00 4.41
4727 4893 2.429971 TGAGCCATTTTGTTGACAGCAA 59.570 40.909 0.00 0.00 0.00 3.91
4738 4904 2.636647 TGACAGCAACTGATTCCACA 57.363 45.000 0.78 0.00 35.18 4.17
4739 4905 2.497138 TGACAGCAACTGATTCCACAG 58.503 47.619 0.78 0.00 42.78 3.66
4740 4906 1.198637 GACAGCAACTGATTCCACAGC 59.801 52.381 0.78 0.00 41.06 4.40
4741 4907 1.202855 ACAGCAACTGATTCCACAGCT 60.203 47.619 0.78 0.00 41.06 4.24
4742 4908 1.884579 CAGCAACTGATTCCACAGCTT 59.115 47.619 0.00 0.00 41.06 3.74
4743 4909 2.295349 CAGCAACTGATTCCACAGCTTT 59.705 45.455 0.00 0.00 41.06 3.51
5088 5256 3.822594 TTCCGGTTGAACAAATCATCG 57.177 42.857 0.00 0.00 38.03 3.84
5116 5284 5.520288 AGATGTTGATGCACGTACATAAGAC 59.480 40.000 0.07 1.97 31.76 3.01
5250 5418 7.692460 ATGTGTGACTTTGTCATGATACATT 57.308 32.000 0.00 0.00 44.63 2.71
5346 5515 2.319472 GAGCATGAACTTTCAAACGCC 58.681 47.619 0.00 0.00 41.13 5.68
5434 5604 4.331443 CGATTCAATATGTTTCACCGTCCA 59.669 41.667 0.00 0.00 0.00 4.02
5483 6595 1.234615 AATTGTCCCACAAGCGTCGG 61.235 55.000 0.00 0.00 41.94 4.79
5555 6667 2.364311 GCGTGTTGGCGTCAATTGC 61.364 57.895 5.40 6.91 35.10 3.56
5711 6834 5.885465 AGAAAAAGTCATCCTCATTCACCT 58.115 37.500 0.00 0.00 0.00 4.00
5743 6866 0.250124 CCCACGGCGGCAATATAAGA 60.250 55.000 13.24 0.00 0.00 2.10
5769 6892 1.072965 CAGTCTGCCCTTTGTCCTTCT 59.927 52.381 0.00 0.00 0.00 2.85
5774 6897 1.332195 GCCCTTTGTCCTTCTGCTTT 58.668 50.000 0.00 0.00 0.00 3.51
5858 6983 3.932710 GCTTCGGATGATTTAGTCACACA 59.067 43.478 0.00 0.00 40.28 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.635663 GATGCGGTTGAACGGGTGAG 61.636 60.000 5.04 0.00 0.00 3.51
34 35 3.067106 ACTAGAATGGCGTGAACTGTTG 58.933 45.455 0.00 0.00 0.00 3.33
37 38 2.688507 ACACTAGAATGGCGTGAACTG 58.311 47.619 0.00 0.00 33.13 3.16
38 39 3.402628 AACACTAGAATGGCGTGAACT 57.597 42.857 0.00 0.00 33.13 3.01
215 216 8.567948 CCAAAAGAGTGACTGTACACATTAATT 58.432 33.333 0.00 0.00 42.45 1.40
224 225 2.846193 TGGCCAAAAGAGTGACTGTAC 58.154 47.619 0.61 0.00 0.00 2.90
228 229 2.233271 CACATGGCCAAAAGAGTGACT 58.767 47.619 10.96 0.00 0.00 3.41
235 236 1.341080 AACCTCCACATGGCCAAAAG 58.659 50.000 10.96 5.45 34.44 2.27
242 243 3.799917 GCTGAAAACAAACCTCCACATGG 60.800 47.826 0.00 0.00 0.00 3.66
244 245 2.034558 CGCTGAAAACAAACCTCCACAT 59.965 45.455 0.00 0.00 0.00 3.21
254 255 5.123820 CCAAAGATAGATCCGCTGAAAACAA 59.876 40.000 0.00 0.00 0.00 2.83
258 259 4.487714 ACCAAAGATAGATCCGCTGAAA 57.512 40.909 0.00 0.00 0.00 2.69
261 262 3.322254 ACCTACCAAAGATAGATCCGCTG 59.678 47.826 0.00 0.00 0.00 5.18
262 263 3.577919 ACCTACCAAAGATAGATCCGCT 58.422 45.455 0.00 0.00 0.00 5.52
266 267 5.463724 CGAGCAAACCTACCAAAGATAGATC 59.536 44.000 0.00 0.00 0.00 2.75
273 274 2.178912 TCCGAGCAAACCTACCAAAG 57.821 50.000 0.00 0.00 0.00 2.77
280 281 0.173708 GACGAGATCCGAGCAAACCT 59.826 55.000 10.05 0.00 41.76 3.50
282 283 0.456312 ACGACGAGATCCGAGCAAAC 60.456 55.000 0.00 0.00 41.76 2.93
302 303 3.111098 GACACACAAACGTAGACGAACT 58.889 45.455 9.41 0.00 43.02 3.01
313 314 2.933906 TCCAACTCGAAGACACACAAAC 59.066 45.455 0.00 0.00 0.00 2.93
316 317 2.288825 GGATCCAACTCGAAGACACACA 60.289 50.000 6.95 0.00 0.00 3.72
345 346 5.008019 ACCGCAGCAGATGAAAATAATGTAG 59.992 40.000 0.00 0.00 0.00 2.74
349 350 4.675510 CAACCGCAGCAGATGAAAATAAT 58.324 39.130 0.00 0.00 0.00 1.28
364 366 1.726865 CAACAGAACAGCAACCGCA 59.273 52.632 0.00 0.00 42.27 5.69
365 367 1.658409 GCAACAGAACAGCAACCGC 60.658 57.895 0.00 0.00 38.99 5.68
372 374 1.571460 GACCAGCGCAACAGAACAG 59.429 57.895 11.47 0.00 0.00 3.16
378 380 2.048597 CGTAGGACCAGCGCAACA 60.049 61.111 11.47 0.00 0.00 3.33
395 397 3.766691 TCGTCGTGCTAAGGCCCC 61.767 66.667 0.00 0.00 37.74 5.80
396 398 2.502692 AAGTCGTCGTGCTAAGGCCC 62.503 60.000 0.00 0.00 37.74 5.80
416 418 6.982141 ACAATTTGTTGTAGTAGACAGTCGAA 59.018 34.615 0.00 0.00 39.88 3.71
417 419 6.419710 CACAATTTGTTGTAGTAGACAGTCGA 59.580 38.462 0.00 0.00 39.88 4.20
424 426 4.449743 GTCGGCACAATTTGTTGTAGTAGA 59.550 41.667 0.00 0.00 33.17 2.59
450 453 3.479203 ATCGCCCTTCCATCGCCA 61.479 61.111 0.00 0.00 0.00 5.69
485 488 0.670546 TACAAGCACTGAAGCGAGCC 60.671 55.000 0.00 0.00 40.15 4.70
488 491 1.666023 CGACTACAAGCACTGAAGCGA 60.666 52.381 0.00 0.00 40.15 4.93
489 492 0.710567 CGACTACAAGCACTGAAGCG 59.289 55.000 0.00 0.00 40.15 4.68
551 554 8.341903 CAATCATGGCAGTACAACGAATATAAA 58.658 33.333 0.00 0.00 0.00 1.40
553 556 7.213678 TCAATCATGGCAGTACAACGAATATA 58.786 34.615 0.00 0.00 0.00 0.86
554 557 6.054941 TCAATCATGGCAGTACAACGAATAT 58.945 36.000 0.00 0.00 0.00 1.28
613 616 5.661458 GAAAGCTCTGTACCACTTAGCATA 58.339 41.667 0.00 0.00 35.63 3.14
615 618 3.614150 CGAAAGCTCTGTACCACTTAGCA 60.614 47.826 0.00 0.00 35.63 3.49
616 619 2.924290 CGAAAGCTCTGTACCACTTAGC 59.076 50.000 0.00 0.00 0.00 3.09
637 640 3.859411 TTATGTTTTTCGACCATGCCC 57.141 42.857 0.00 0.00 0.00 5.36
687 690 9.403583 AGCACTTCCCGATTTTCTATTTTAATA 57.596 29.630 0.00 0.00 0.00 0.98
706 711 3.634910 TCTTGTTTTGGGGTAAGCACTTC 59.365 43.478 0.00 0.00 0.00 3.01
998 1006 1.205655 TCTCCCTGTCAAGCTTCATCG 59.794 52.381 0.00 0.00 0.00 3.84
1107 1115 1.822990 AGGTAAGAGAAATCGACGGCA 59.177 47.619 0.00 0.00 0.00 5.69
1116 1124 6.572509 CGAGTTCTTGGATGAGGTAAGAGAAA 60.573 42.308 0.00 0.00 32.59 2.52
1171 1191 0.782384 AAAGCGTTGTCGTCGTCATC 59.218 50.000 0.00 0.00 39.49 2.92
1173 1193 1.210545 GGAAAGCGTTGTCGTCGTCA 61.211 55.000 0.00 0.00 39.49 4.35
1175 1195 0.529119 AAGGAAAGCGTTGTCGTCGT 60.529 50.000 0.00 0.00 39.49 4.34
1176 1196 0.161024 GAAGGAAAGCGTTGTCGTCG 59.839 55.000 0.00 0.00 39.49 5.12
1177 1197 1.070776 GTGAAGGAAAGCGTTGTCGTC 60.071 52.381 0.00 0.00 39.49 4.20
1178 1198 0.935196 GTGAAGGAAAGCGTTGTCGT 59.065 50.000 0.00 0.00 39.49 4.34
1179 1199 0.234884 GGTGAAGGAAAGCGTTGTCG 59.765 55.000 0.00 0.00 40.37 4.35
1180 1200 0.591659 GGGTGAAGGAAAGCGTTGTC 59.408 55.000 0.00 0.00 0.00 3.18
1181 1201 0.822121 GGGGTGAAGGAAAGCGTTGT 60.822 55.000 0.00 0.00 0.00 3.32
1182 1202 0.821711 TGGGGTGAAGGAAAGCGTTG 60.822 55.000 0.00 0.00 0.00 4.10
1183 1203 0.537371 CTGGGGTGAAGGAAAGCGTT 60.537 55.000 0.00 0.00 0.00 4.84
1184 1204 1.073199 CTGGGGTGAAGGAAAGCGT 59.927 57.895 0.00 0.00 0.00 5.07
1185 1205 1.675641 CCTGGGGTGAAGGAAAGCG 60.676 63.158 0.00 0.00 36.91 4.68
1186 1206 1.767692 TCCTGGGGTGAAGGAAAGC 59.232 57.895 0.00 0.00 40.95 3.51
1844 1884 6.072112 AGAAACGACACAACATTTAGCAAT 57.928 33.333 0.00 0.00 0.00 3.56
1886 1926 5.597813 AGCTTTCAATCAGTTTCTGTACG 57.402 39.130 0.00 0.00 32.61 3.67
2205 2245 6.514947 ACAATACAAGCTGCAAAATTCAGAA 58.485 32.000 1.02 0.00 33.54 3.02
2517 2572 7.520776 CGTGGTTACATGAAAAATTACAGGTGA 60.521 37.037 0.00 0.00 35.58 4.02
2576 2631 7.254852 GCTCTTATATTATGAGACGAAGGGAG 58.745 42.308 0.00 0.00 33.20 4.30
2577 2632 6.127980 CGCTCTTATATTATGAGACGAAGGGA 60.128 42.308 11.45 0.00 34.62 4.20
2578 2633 6.030849 CGCTCTTATATTATGAGACGAAGGG 58.969 44.000 11.45 2.16 34.62 3.95
2579 2634 6.613233 ACGCTCTTATATTATGAGACGAAGG 58.387 40.000 18.20 3.81 35.57 3.46
2580 2635 8.508800 AAACGCTCTTATATTATGAGACGAAG 57.491 34.615 18.20 4.07 35.57 3.79
2581 2636 8.867112 AAAACGCTCTTATATTATGAGACGAA 57.133 30.769 18.20 0.00 35.57 3.85
2594 2649 9.469807 CTCTGTCTCATAATAAAACGCTCTTAT 57.530 33.333 0.00 0.00 0.00 1.73
2595 2650 7.921214 CCTCTGTCTCATAATAAAACGCTCTTA 59.079 37.037 0.00 0.00 0.00 2.10
2596 2651 6.758886 CCTCTGTCTCATAATAAAACGCTCTT 59.241 38.462 0.00 0.00 0.00 2.85
2597 2652 6.276847 CCTCTGTCTCATAATAAAACGCTCT 58.723 40.000 0.00 0.00 0.00 4.09
2598 2653 5.463724 CCCTCTGTCTCATAATAAAACGCTC 59.536 44.000 0.00 0.00 0.00 5.03
2599 2654 5.128827 TCCCTCTGTCTCATAATAAAACGCT 59.871 40.000 0.00 0.00 0.00 5.07
2600 2655 5.357257 TCCCTCTGTCTCATAATAAAACGC 58.643 41.667 0.00 0.00 0.00 4.84
2601 2656 6.574350 ACTCCCTCTGTCTCATAATAAAACG 58.426 40.000 0.00 0.00 0.00 3.60
2604 2659 9.213777 ACAATACTCCCTCTGTCTCATAATAAA 57.786 33.333 0.00 0.00 0.00 1.40
2605 2660 8.783660 ACAATACTCCCTCTGTCTCATAATAA 57.216 34.615 0.00 0.00 0.00 1.40
2606 2661 8.783660 AACAATACTCCCTCTGTCTCATAATA 57.216 34.615 0.00 0.00 0.00 0.98
2607 2662 7.566879 AGAACAATACTCCCTCTGTCTCATAAT 59.433 37.037 0.00 0.00 0.00 1.28
2608 2663 6.897966 AGAACAATACTCCCTCTGTCTCATAA 59.102 38.462 0.00 0.00 0.00 1.90
2609 2664 6.322456 CAGAACAATACTCCCTCTGTCTCATA 59.678 42.308 0.00 0.00 30.98 2.15
2610 2665 5.128499 CAGAACAATACTCCCTCTGTCTCAT 59.872 44.000 0.00 0.00 30.98 2.90
2611 2666 4.464244 CAGAACAATACTCCCTCTGTCTCA 59.536 45.833 0.00 0.00 30.98 3.27
2612 2667 4.464597 ACAGAACAATACTCCCTCTGTCTC 59.535 45.833 0.00 0.00 42.27 3.36
2613 2668 4.421131 ACAGAACAATACTCCCTCTGTCT 58.579 43.478 0.00 0.00 42.27 3.41
2614 2669 4.810191 ACAGAACAATACTCCCTCTGTC 57.190 45.455 0.00 0.00 42.27 3.51
2616 2671 5.451242 GCTAGACAGAACAATACTCCCTCTG 60.451 48.000 0.00 0.00 39.53 3.35
2617 2672 4.647399 GCTAGACAGAACAATACTCCCTCT 59.353 45.833 0.00 0.00 0.00 3.69
2618 2673 4.402793 TGCTAGACAGAACAATACTCCCTC 59.597 45.833 0.00 0.00 0.00 4.30
2619 2674 4.353777 TGCTAGACAGAACAATACTCCCT 58.646 43.478 0.00 0.00 0.00 4.20
2620 2675 4.737855 TGCTAGACAGAACAATACTCCC 57.262 45.455 0.00 0.00 0.00 4.30
2621 2676 7.661968 TGATATGCTAGACAGAACAATACTCC 58.338 38.462 0.00 0.00 0.00 3.85
2622 2677 9.703892 AATGATATGCTAGACAGAACAATACTC 57.296 33.333 0.00 0.00 0.00 2.59
2677 2732 4.729227 ACAATCAACGGTTTCCACTTTT 57.271 36.364 0.00 0.00 0.00 2.27
2690 2745 8.254508 AGAAATACAGAGGTCTCTACAATCAAC 58.745 37.037 0.00 0.00 37.98 3.18
3247 3306 1.478137 CGATGTTCTAGCGTAGGTGC 58.522 55.000 0.00 0.00 40.22 5.01
3461 3580 2.095668 CGAGATCCTATCCCGTTTCTCG 60.096 54.545 5.85 5.85 44.21 4.04
3857 3983 3.249189 GTGGTCTCCCTGGTGGCA 61.249 66.667 0.00 0.00 0.00 4.92
4225 4353 4.468689 GGCGAAACCCTAGCCGCT 62.469 66.667 0.00 0.00 46.02 5.52
4651 4817 2.878406 CTGCGGTCTCTCCTTTCAAAAA 59.122 45.455 0.00 0.00 0.00 1.94
4652 4818 2.158813 ACTGCGGTCTCTCCTTTCAAAA 60.159 45.455 0.00 0.00 0.00 2.44
4653 4819 1.416401 ACTGCGGTCTCTCCTTTCAAA 59.584 47.619 0.00 0.00 0.00 2.69
4654 4820 1.048601 ACTGCGGTCTCTCCTTTCAA 58.951 50.000 0.00 0.00 0.00 2.69
4655 4821 0.318441 CACTGCGGTCTCTCCTTTCA 59.682 55.000 0.00 0.00 0.00 2.69
4656 4822 0.318762 ACACTGCGGTCTCTCCTTTC 59.681 55.000 0.00 0.00 0.00 2.62
4657 4823 0.034059 CACACTGCGGTCTCTCCTTT 59.966 55.000 0.00 0.00 0.00 3.11
4658 4824 1.115930 ACACACTGCGGTCTCTCCTT 61.116 55.000 0.00 0.00 0.00 3.36
4659 4825 1.115930 AACACACTGCGGTCTCTCCT 61.116 55.000 0.00 0.00 0.00 3.69
4660 4826 0.946221 CAACACACTGCGGTCTCTCC 60.946 60.000 0.00 0.00 0.00 3.71
4661 4827 0.032130 TCAACACACTGCGGTCTCTC 59.968 55.000 0.00 0.00 0.00 3.20
4662 4828 0.249489 GTCAACACACTGCGGTCTCT 60.249 55.000 0.00 0.00 0.00 3.10
4663 4829 0.529773 TGTCAACACACTGCGGTCTC 60.530 55.000 0.00 0.00 0.00 3.36
4664 4830 0.106708 ATGTCAACACACTGCGGTCT 59.893 50.000 0.00 0.00 34.48 3.85
4665 4831 0.944386 AATGTCAACACACTGCGGTC 59.056 50.000 0.00 0.00 34.48 4.79
4666 4832 2.248280 TAATGTCAACACACTGCGGT 57.752 45.000 0.00 0.00 34.48 5.68
4667 4833 2.483877 ACATAATGTCAACACACTGCGG 59.516 45.455 0.00 0.00 34.48 5.69
4668 4834 3.736213 GACATAATGTCAACACACTGCG 58.264 45.455 0.00 0.00 46.22 5.18
4683 4849 6.382859 TCAGTAGAACCCAAGCATAGACATAA 59.617 38.462 0.00 0.00 0.00 1.90
4698 4864 4.518970 TCAACAAAATGGCTCAGTAGAACC 59.481 41.667 0.00 0.00 0.00 3.62
4722 4888 1.531423 AGCTGTGGAATCAGTTGCTG 58.469 50.000 0.00 0.00 37.70 4.41
4723 4889 2.283145 AAGCTGTGGAATCAGTTGCT 57.717 45.000 0.00 0.00 37.70 3.91
4724 4890 3.054878 CAAAAGCTGTGGAATCAGTTGC 58.945 45.455 0.00 0.00 37.70 4.17
4725 4891 4.311816 ACAAAAGCTGTGGAATCAGTTG 57.688 40.909 0.00 0.00 36.69 3.16
4736 4902 0.657840 GTCGCAGTCACAAAAGCTGT 59.342 50.000 0.00 0.00 39.56 4.40
4737 4903 0.383491 CGTCGCAGTCACAAAAGCTG 60.383 55.000 0.00 0.00 0.00 4.24
4738 4904 0.529773 TCGTCGCAGTCACAAAAGCT 60.530 50.000 0.00 0.00 0.00 3.74
4739 4905 0.303493 TTCGTCGCAGTCACAAAAGC 59.697 50.000 0.00 0.00 0.00 3.51
4740 4906 2.949714 ATTCGTCGCAGTCACAAAAG 57.050 45.000 0.00 0.00 0.00 2.27
4741 4907 3.684103 AAATTCGTCGCAGTCACAAAA 57.316 38.095 0.00 0.00 0.00 2.44
4742 4908 3.684103 AAAATTCGTCGCAGTCACAAA 57.316 38.095 0.00 0.00 0.00 2.83
4743 4909 3.064134 TGAAAAATTCGTCGCAGTCACAA 59.936 39.130 0.00 0.00 0.00 3.33
4955 5123 3.393089 AATCTACATGGCGAGATCACC 57.607 47.619 0.00 0.00 31.02 4.02
5088 5256 8.515473 TTATGTACGTGCATCAACATCTATAC 57.485 34.615 22.79 0.00 34.54 1.47
5116 5284 6.801539 TTAAGTTACAAGAAGCATCACCAG 57.198 37.500 0.00 0.00 0.00 4.00
5223 5391 8.255394 TGTATCATGACAAAGTCACACATAAG 57.745 34.615 0.00 0.00 45.65 1.73
5259 5427 8.660295 TTCCTCTGTCCAGATACTTAGTAAAA 57.340 34.615 0.00 0.00 36.76 1.52
5388 5558 2.910319 TGTGGTGGGTCATAGCTAACTT 59.090 45.455 0.00 0.00 0.00 2.66
5434 5604 8.424918 AGATCTAGAACGTCCAATTATGTGATT 58.575 33.333 0.00 0.00 0.00 2.57
5483 6595 2.156310 GTGACGGGTGAAAATGACGTAC 59.844 50.000 0.00 0.00 37.96 3.67
5555 6667 1.535204 AATTGGGCTGTTTCAGGGCG 61.535 55.000 0.00 0.00 31.21 6.13
5634 6747 5.413523 GGTCTCTATATCGAAGGGAGAAGTC 59.586 48.000 10.68 2.45 35.28 3.01
5743 6866 1.145738 ACAAAGGGCAGACTGTTCCAT 59.854 47.619 15.89 4.83 0.00 3.41
5796 6921 1.073763 AGGCAAGAACCATGTGTGCTA 59.926 47.619 0.00 0.00 28.27 3.49
5802 6927 4.706962 GGAAATAGAAGGCAAGAACCATGT 59.293 41.667 0.00 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.