Multiple sequence alignment - TraesCS5D01G118800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G118800 chr5D 100.000 3131 0 0 1 3131 160063644 160066774 0.000000e+00 5782.0
1 TraesCS5D01G118800 chr5D 100.000 3107 0 0 3390 6496 160067033 160070139 0.000000e+00 5738.0
2 TraesCS5D01G118800 chr5D 91.385 917 42 13 3556 4458 45631309 45632202 0.000000e+00 1221.0
3 TraesCS5D01G118800 chr5D 90.123 243 19 2 3557 3799 512455154 512454917 1.760000e-80 311.0
4 TraesCS5D01G118800 chr5D 86.071 280 30 6 345 621 287795932 287796205 6.370000e-75 292.0
5 TraesCS5D01G118800 chr5D 84.429 289 40 3 625 909 287796221 287795934 4.960000e-71 279.0
6 TraesCS5D01G118800 chr5D 82.848 309 33 7 3558 3865 47289322 47289611 6.460000e-65 259.0
7 TraesCS5D01G118800 chr5D 90.411 146 14 0 6341 6486 96333700 96333555 6.650000e-45 193.0
8 TraesCS5D01G118800 chr5D 80.147 272 39 5 348 619 3237999 3237743 8.600000e-44 189.0
9 TraesCS5D01G118800 chr5D 91.736 121 7 3 143 263 461072651 461072768 1.450000e-36 165.0
10 TraesCS5D01G118800 chr5D 92.174 115 7 2 143 257 241946334 241946446 1.870000e-35 161.0
11 TraesCS5D01G118800 chr5D 84.118 170 21 5 6328 6496 464136387 464136551 6.740000e-35 159.0
12 TraesCS5D01G118800 chr5D 84.615 78 9 3 3484 3558 234155841 234155918 2.510000e-09 75.0
13 TraesCS5D01G118800 chr5D 100.000 28 0 0 4483 4510 447393530 447393557 1.200000e-02 52.8
14 TraesCS5D01G118800 chr5A 96.981 1855 33 11 932 2780 260336554 260334717 0.000000e+00 3094.0
15 TraesCS5D01G118800 chr5A 96.036 1665 44 11 4208 5851 260333779 260332116 0.000000e+00 2689.0
16 TraesCS5D01G118800 chr5A 88.186 948 69 23 3541 4477 9826260 9827175 0.000000e+00 1090.0
17 TraesCS5D01G118800 chr5A 87.265 958 73 25 3537 4484 708172009 708172927 0.000000e+00 1048.0
18 TraesCS5D01G118800 chr5A 97.895 380 8 0 3390 3769 260334643 260334264 0.000000e+00 658.0
19 TraesCS5D01G118800 chr5A 94.845 388 18 2 3767 4153 260334160 260333774 7.200000e-169 604.0
20 TraesCS5D01G118800 chr5A 93.478 368 23 1 254 621 260337753 260337387 4.430000e-151 545.0
21 TraesCS5D01G118800 chr5A 91.483 317 22 3 625 940 260337262 260336950 1.290000e-116 431.0
22 TraesCS5D01G118800 chr5A 89.716 282 28 1 3559 3839 149222692 149222411 6.190000e-95 359.0
23 TraesCS5D01G118800 chr5A 86.471 170 22 1 6327 6496 349618805 349618973 1.110000e-42 185.0
24 TraesCS5D01G118800 chr5A 96.296 108 4 0 5984 6091 260332047 260331940 1.860000e-40 178.0
25 TraesCS5D01G118800 chr5A 91.597 119 7 3 143 261 320214293 320214408 1.870000e-35 161.0
26 TraesCS5D01G118800 chr5B 97.092 1238 25 5 1843 3072 166539120 166540354 0.000000e+00 2076.0
27 TraesCS5D01G118800 chr5B 97.077 992 23 4 4542 5531 166540901 166541888 0.000000e+00 1666.0
28 TraesCS5D01G118800 chr5B 93.765 818 15 7 966 1778 166538011 166538797 0.000000e+00 1195.0
29 TraesCS5D01G118800 chr5B 89.378 932 81 13 3551 4478 576871737 576872654 0.000000e+00 1157.0
30 TraesCS5D01G118800 chr5B 89.062 448 49 0 5990 6437 161642601 161642154 2.050000e-154 556.0
31 TraesCS5D01G118800 chr5B 93.312 314 19 2 5538 5851 161643040 161642729 4.590000e-126 462.0
32 TraesCS5D01G118800 chr5B 91.401 314 25 2 5538 5851 161643802 161643491 4.650000e-116 429.0
33 TraesCS5D01G118800 chr5B 92.537 268 19 1 5584 5851 161644519 161644253 3.670000e-102 383.0
34 TraesCS5D01G118800 chr5B 86.331 278 32 4 345 621 326908550 326908822 1.370000e-76 298.0
35 TraesCS5D01G118800 chr5B 85.069 288 39 4 625 909 326908838 326908552 2.290000e-74 291.0
36 TraesCS5D01G118800 chr5B 87.059 170 21 1 6327 6496 295664233 295664065 2.390000e-44 191.0
37 TraesCS5D01G118800 chr5B 97.222 108 3 0 3451 3558 166540400 166540507 4.000000e-42 183.0
38 TraesCS5D01G118800 chr5B 92.424 66 2 1 4481 4543 166540505 166540570 2.490000e-14 91.6
39 TraesCS5D01G118800 chr5B 100.000 29 0 0 4456 4484 576871769 576871741 3.000000e-03 54.7
40 TraesCS5D01G118800 chr7D 96.541 925 27 3 3558 4477 64550919 64551843 0.000000e+00 1526.0
41 TraesCS5D01G118800 chr7D 82.593 856 102 24 1874 2710 490436728 490437555 0.000000e+00 712.0
42 TraesCS5D01G118800 chr7D 84.821 336 39 9 5122 5447 490438293 490438626 1.750000e-85 327.0
43 TraesCS5D01G118800 chr7D 84.252 254 33 6 3594 3845 506115535 506115287 2.340000e-59 241.0
44 TraesCS5D01G118800 chr7D 85.388 219 26 4 405 620 597859102 597858887 8.480000e-54 222.0
45 TraesCS5D01G118800 chr7D 89.024 164 13 3 1057 1219 490435443 490435602 1.430000e-46 198.0
46 TraesCS5D01G118800 chr7D 86.250 160 17 3 6328 6485 126012778 126012622 1.120000e-37 169.0
47 TraesCS5D01G118800 chr7D 84.615 169 20 6 4319 4484 36079020 36078855 5.210000e-36 163.0
48 TraesCS5D01G118800 chr7D 89.535 86 5 4 27 111 569945589 569945671 8.910000e-19 106.0
49 TraesCS5D01G118800 chr7D 75.648 193 40 7 3556 3744 87508291 87508480 8.970000e-14 89.8
50 TraesCS5D01G118800 chr7D 97.297 37 0 1 3446 3481 481672852 481672888 1.960000e-05 62.1
51 TraesCS5D01G118800 chr7B 91.135 925 72 8 3558 4478 226903839 226902921 0.000000e+00 1245.0
52 TraesCS5D01G118800 chr7B 86.200 471 48 11 1874 2340 518917616 518918073 1.630000e-135 494.0
53 TraesCS5D01G118800 chr7B 89.664 387 37 3 3565 3950 505953224 505952840 2.100000e-134 490.0
54 TraesCS5D01G118800 chr7B 89.781 274 26 2 2437 2710 518918336 518918607 3.730000e-92 350.0
55 TraesCS5D01G118800 chr7B 83.036 336 45 9 5122 5447 518919356 518919689 1.770000e-75 294.0
56 TraesCS5D01G118800 chr7B 87.195 164 16 2 1057 1219 518916092 518916251 1.440000e-41 182.0
57 TraesCS5D01G118800 chr7B 86.408 103 11 3 3456 3557 14999574 14999674 6.890000e-20 110.0
58 TraesCS5D01G118800 chr7B 82.456 114 16 4 3446 3558 507009482 507009592 5.360000e-16 97.1
59 TraesCS5D01G118800 chr7A 90.880 932 75 8 3556 4483 238581030 238581955 0.000000e+00 1242.0
60 TraesCS5D01G118800 chr7A 84.946 465 51 13 1874 2334 556767461 556767910 2.760000e-123 453.0
61 TraesCS5D01G118800 chr7A 87.956 274 29 3 2437 2710 556768100 556768369 2.920000e-83 320.0
62 TraesCS5D01G118800 chr7A 84.226 336 41 9 5122 5447 556769115 556769448 3.780000e-82 316.0
63 TraesCS5D01G118800 chr7A 81.008 258 41 7 4635 4887 556768773 556769027 1.430000e-46 198.0
64 TraesCS5D01G118800 chr7A 93.284 134 8 1 1086 1219 556766215 556766347 5.140000e-46 196.0
65 TraesCS5D01G118800 chr7A 96.970 33 0 1 3434 3465 153377803 153377835 3.000000e-03 54.7
66 TraesCS5D01G118800 chr3B 90.311 867 74 8 3622 4484 289594033 289594893 0.000000e+00 1127.0
67 TraesCS5D01G118800 chr3B 80.000 285 40 12 348 626 795426694 795426421 1.850000e-45 195.0
68 TraesCS5D01G118800 chr3B 87.368 95 8 3 42 134 498460392 498460300 8.910000e-19 106.0
69 TraesCS5D01G118800 chr3B 85.714 70 9 1 4513 4582 441856596 441856664 9.030000e-09 73.1
70 TraesCS5D01G118800 chr3B 87.931 58 7 0 4525 4582 442386808 442386865 1.170000e-07 69.4
71 TraesCS5D01G118800 chr3B 100.000 28 0 0 4481 4508 795178557 795178530 1.200000e-02 52.8
72 TraesCS5D01G118800 chr4B 88.805 929 78 14 3556 4483 180993019 180992116 0.000000e+00 1116.0
73 TraesCS5D01G118800 chr4B 81.496 254 29 6 348 595 1856354 1856595 6.650000e-45 193.0
74 TraesCS5D01G118800 chr4B 85.714 168 22 2 6330 6496 460324851 460324685 6.690000e-40 176.0
75 TraesCS5D01G118800 chr4B 85.207 169 24 1 6328 6496 267027646 267027479 8.660000e-39 172.0
76 TraesCS5D01G118800 chr4B 86.667 90 11 1 4395 4484 568468356 568468268 1.490000e-16 99.0
77 TraesCS5D01G118800 chr4B 78.065 155 28 6 4259 4411 568468508 568468358 6.940000e-15 93.5
78 TraesCS5D01G118800 chr2A 87.327 939 77 24 3558 4487 716711110 716710205 0.000000e+00 1037.0
79 TraesCS5D01G118800 chr2A 80.645 279 37 10 630 907 721444409 721444147 3.970000e-47 200.0
80 TraesCS5D01G118800 chr2A 93.043 115 6 2 143 257 419206928 419206816 4.030000e-37 167.0
81 TraesCS5D01G118800 chr2A 89.412 85 7 2 27 111 724422470 724422388 8.910000e-19 106.0
82 TraesCS5D01G118800 chr2A 86.765 68 6 3 3456 3521 53286703 53286769 9.030000e-09 73.1
83 TraesCS5D01G118800 chr2A 97.143 35 1 0 4555 4589 659889092 659889126 7.030000e-05 60.2
84 TraesCS5D01G118800 chr6A 87.200 875 87 11 3611 4481 557927428 557928281 0.000000e+00 972.0
85 TraesCS5D01G118800 chr6A 86.853 251 27 3 3551 3800 395869423 395869668 6.420000e-70 276.0
86 TraesCS5D01G118800 chr6A 86.957 92 9 2 20 111 584767461 584767549 4.140000e-17 100.0
87 TraesCS5D01G118800 chr6A 100.000 28 0 0 3558 3585 557928281 557928254 1.200000e-02 52.8
88 TraesCS5D01G118800 chr1A 84.987 746 72 22 3558 4294 2152525 2153239 0.000000e+00 721.0
89 TraesCS5D01G118800 chr1A 89.873 237 19 3 3564 3800 435375905 435375674 3.810000e-77 300.0
90 TraesCS5D01G118800 chr1A 87.552 241 25 2 3560 3800 8733257 8733022 2.310000e-69 274.0
91 TraesCS5D01G118800 chr1A 84.028 288 39 5 625 908 546329719 546329435 2.990000e-68 270.0
92 TraesCS5D01G118800 chr1A 86.250 160 22 0 6327 6486 537141597 537141756 2.410000e-39 174.0
93 TraesCS5D01G118800 chr1A 79.918 244 34 6 378 621 299490312 299490084 1.450000e-36 165.0
94 TraesCS5D01G118800 chr1A 86.957 92 8 4 27 117 432851030 432851118 4.140000e-17 100.0
95 TraesCS5D01G118800 chr1A 81.739 115 17 4 3 117 532548114 532548004 6.940000e-15 93.5
96 TraesCS5D01G118800 chr1A 84.146 82 11 2 3476 3556 486344708 486344628 1.940000e-10 78.7
97 TraesCS5D01G118800 chr2B 87.622 307 35 2 3552 3855 59264321 59264627 2.880000e-93 353.0
98 TraesCS5D01G118800 chr2B 87.742 155 19 0 6333 6487 481911922 481912076 1.440000e-41 182.0
99 TraesCS5D01G118800 chr1B 89.030 237 21 3 3564 3800 452565354 452565123 8.240000e-74 289.0
100 TraesCS5D01G118800 chr1B 87.578 161 20 0 6327 6487 531029582 531029422 3.090000e-43 187.0
101 TraesCS5D01G118800 chr1B 88.506 87 7 3 27 111 119488929 119488844 1.150000e-17 102.0
102 TraesCS5D01G118800 chr6B 87.243 243 22 4 3558 3800 171787466 171787699 1.070000e-67 268.0
103 TraesCS5D01G118800 chr6B 80.488 246 39 7 378 621 32578634 32578872 5.170000e-41 180.0
104 TraesCS5D01G118800 chr6B 86.250 160 22 0 6327 6486 362863273 362863432 2.410000e-39 174.0
105 TraesCS5D01G118800 chr6B 77.241 290 52 13 625 907 64743006 64743288 2.420000e-34 158.0
106 TraesCS5D01G118800 chr6B 89.535 86 5 4 27 111 207462013 207461931 8.910000e-19 106.0
107 TraesCS5D01G118800 chr3A 88.824 170 18 1 6327 6496 180867345 180867513 2.370000e-49 207.0
108 TraesCS5D01G118800 chr3A 82.524 206 32 4 349 553 143015804 143016006 1.860000e-40 178.0
109 TraesCS5D01G118800 chr3A 93.043 115 6 2 143 257 600923190 600923078 4.030000e-37 167.0
110 TraesCS5D01G118800 chr3A 92.174 115 7 2 143 257 600920967 600920855 1.870000e-35 161.0
111 TraesCS5D01G118800 chr3A 88.636 88 6 4 27 113 649800777 649800861 3.200000e-18 104.0
112 TraesCS5D01G118800 chr3A 100.000 28 0 0 4481 4508 724177136 724177163 1.200000e-02 52.8
113 TraesCS5D01G118800 chr3A 100.000 28 0 0 4481 4508 724189542 724189569 1.200000e-02 52.8
114 TraesCS5D01G118800 chr4A 81.004 279 33 12 633 909 676528414 676528674 3.070000e-48 204.0
115 TraesCS5D01G118800 chr4A 92.308 39 3 0 4114 4152 261879005 261878967 1.000000e-03 56.5
116 TraesCS5D01G118800 chr6D 88.957 163 18 0 6328 6490 277722219 277722381 1.100000e-47 202.0
117 TraesCS5D01G118800 chr6D 92.174 115 8 1 143 257 306708005 306708118 1.870000e-35 161.0
118 TraesCS5D01G118800 chr6D 81.250 160 26 3 6330 6486 263589803 263589961 6.840000e-25 126.0
119 TraesCS5D01G118800 chr6D 80.745 161 29 2 6327 6486 94781523 94781682 2.460000e-24 124.0
120 TraesCS5D01G118800 chr6D 97.059 34 1 0 4481 4514 436457578 436457545 2.530000e-04 58.4
121 TraesCS5D01G118800 chrUn 79.930 284 45 11 630 907 101615889 101615612 1.430000e-46 198.0
122 TraesCS5D01G118800 chrUn 88.889 54 3 1 3474 3524 29857278 29857225 5.440000e-06 63.9
123 TraesCS5D01G118800 chr3D 88.415 164 19 0 6327 6490 374925215 374925052 1.430000e-46 198.0
124 TraesCS5D01G118800 chr3D 84.456 193 22 6 3556 3745 346544247 346544060 4.000000e-42 183.0
125 TraesCS5D01G118800 chr3D 91.667 120 7 3 143 261 91710816 91710933 5.210000e-36 163.0
126 TraesCS5D01G118800 chr3D 83.784 148 21 3 6341 6486 98924097 98924243 3.160000e-28 137.0
127 TraesCS5D01G118800 chr3D 76.429 280 50 13 349 621 584452383 584452113 3.160000e-28 137.0
128 TraesCS5D01G118800 chr3D 74.146 205 46 7 347 548 452643652 452643452 1.940000e-10 78.7
129 TraesCS5D01G118800 chr3D 100.000 28 0 0 3486 3513 548009341 548009314 1.200000e-02 52.8
130 TraesCS5D01G118800 chr4D 79.323 266 43 10 649 909 448516791 448517049 6.690000e-40 176.0
131 TraesCS5D01G118800 chr4D 93.333 45 2 1 4108 4152 391733453 391733410 1.510000e-06 65.8
132 TraesCS5D01G118800 chr1D 86.076 158 22 0 6330 6487 270627584 270627427 3.110000e-38 171.0
133 TraesCS5D01G118800 chr1D 93.103 116 6 2 143 258 286378433 286378320 1.120000e-37 169.0
134 TraesCS5D01G118800 chr1D 85.443 158 23 0 6327 6484 61863346 61863189 1.450000e-36 165.0
135 TraesCS5D01G118800 chr1D 84.868 152 22 1 6328 6479 121589859 121589709 1.130000e-32 152.0
136 TraesCS5D01G118800 chr1D 100.000 28 0 0 4481 4508 352546772 352546799 1.200000e-02 52.8
137 TraesCS5D01G118800 chr2D 79.798 99 9 6 4481 4577 602698783 602698872 1.960000e-05 62.1
138 TraesCS5D01G118800 chr2D 96.970 33 0 1 3434 3465 395132316 395132284 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G118800 chr5D 160063644 160070139 6495 False 5760.000000 5782 100.000000 1 6496 2 chr5D.!!$F9 6495
1 TraesCS5D01G118800 chr5D 45631309 45632202 893 False 1221.000000 1221 91.385000 3556 4458 1 chr5D.!!$F1 902
2 TraesCS5D01G118800 chr5A 260331940 260337753 5813 True 1171.285714 3094 95.287714 254 6091 7 chr5A.!!$R2 5837
3 TraesCS5D01G118800 chr5A 9826260 9827175 915 False 1090.000000 1090 88.186000 3541 4477 1 chr5A.!!$F1 936
4 TraesCS5D01G118800 chr5A 708172009 708172927 918 False 1048.000000 1048 87.265000 3537 4484 1 chr5A.!!$F4 947
5 TraesCS5D01G118800 chr5B 576871737 576872654 917 False 1157.000000 1157 89.378000 3551 4478 1 chr5B.!!$F2 927
6 TraesCS5D01G118800 chr5B 166538011 166541888 3877 False 1042.320000 2076 95.516000 966 5531 5 chr5B.!!$F3 4565
7 TraesCS5D01G118800 chr5B 161642154 161644519 2365 True 457.500000 556 91.578000 5538 6437 4 chr5B.!!$R4 899
8 TraesCS5D01G118800 chr7D 64550919 64551843 924 False 1526.000000 1526 96.541000 3558 4477 1 chr7D.!!$F1 919
9 TraesCS5D01G118800 chr7D 490435443 490438626 3183 False 412.333333 712 85.479333 1057 5447 3 chr7D.!!$F5 4390
10 TraesCS5D01G118800 chr7B 226902921 226903839 918 True 1245.000000 1245 91.135000 3558 4478 1 chr7B.!!$R1 920
11 TraesCS5D01G118800 chr7B 518916092 518919689 3597 False 330.000000 494 86.553000 1057 5447 4 chr7B.!!$F3 4390
12 TraesCS5D01G118800 chr7A 238581030 238581955 925 False 1242.000000 1242 90.880000 3556 4483 1 chr7A.!!$F2 927
13 TraesCS5D01G118800 chr7A 556766215 556769448 3233 False 296.600000 453 86.284000 1086 5447 5 chr7A.!!$F3 4361
14 TraesCS5D01G118800 chr3B 289594033 289594893 860 False 1127.000000 1127 90.311000 3622 4484 1 chr3B.!!$F1 862
15 TraesCS5D01G118800 chr4B 180992116 180993019 903 True 1116.000000 1116 88.805000 3556 4483 1 chr4B.!!$R1 927
16 TraesCS5D01G118800 chr2A 716710205 716711110 905 True 1037.000000 1037 87.327000 3558 4487 1 chr2A.!!$R2 929
17 TraesCS5D01G118800 chr6A 557927428 557928281 853 False 972.000000 972 87.200000 3611 4481 1 chr6A.!!$F2 870
18 TraesCS5D01G118800 chr1A 2152525 2153239 714 False 721.000000 721 84.987000 3558 4294 1 chr1A.!!$F1 736

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
967 1494 0.320374 CGCTCACCAAACCCACTCTA 59.680 55.000 0.00 0.0 0.00 2.43 F
1704 2800 0.250338 GTCCTTGCTGTCCCTCGTTT 60.250 55.000 0.00 0.0 0.00 3.60 F
2804 4536 3.869065 TGCTAAGCTGGTTACCATACAC 58.131 45.455 3.88 0.0 30.82 2.90 F
3112 4845 0.048749 ATGTTAGGGGGAATGGGGGA 59.951 55.000 0.00 0.0 0.00 4.81 F
3113 4846 0.626277 TGTTAGGGGGAATGGGGGAG 60.626 60.000 0.00 0.0 0.00 4.30 F
3961 5820 1.536662 GGAGGACGGAGGGGCATAT 60.537 63.158 0.00 0.0 0.00 1.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2862 4594 0.926155 CACATCGAGTTCATCTGGCG 59.074 55.000 0.00 0.0 0.00 5.69 R
3044 4777 0.179468 ACCCCATACGATTTGGTCCG 59.821 55.000 0.00 0.0 31.99 4.79 R
4434 6314 0.178767 GCCCTGGAAATGGATTTGGC 59.821 55.000 0.00 0.0 31.06 4.52 R
4925 7218 2.035066 ACATCAAGACAGCAAAACCAGC 59.965 45.455 0.00 0.0 0.00 4.85 R
5071 7364 3.010584 ACCAACAGAAGTTCAGGCCATAT 59.989 43.478 5.01 0.0 35.28 1.78 R
5881 8190 0.751643 GAAGCATATGGGGCCGTGTT 60.752 55.000 4.56 0.0 0.00 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 8.921353 ATGATACTATGTCTTACGAAGGTAGT 57.079 34.615 0.00 2.42 0.00 2.73
87 88 8.921353 ACTATGTCTTACGAAGGTAGTATCAT 57.079 34.615 0.00 0.00 0.00 2.45
91 92 7.923888 TGTCTTACGAAGGTAGTATCATACAC 58.076 38.462 0.00 0.00 0.00 2.90
92 93 7.772292 TGTCTTACGAAGGTAGTATCATACACT 59.228 37.037 0.00 0.00 0.00 3.55
93 94 9.265901 GTCTTACGAAGGTAGTATCATACACTA 57.734 37.037 0.00 0.00 0.00 2.74
94 95 9.486497 TCTTACGAAGGTAGTATCATACACTAG 57.514 37.037 0.00 0.00 0.00 2.57
95 96 9.270640 CTTACGAAGGTAGTATCATACACTAGT 57.729 37.037 0.00 0.00 0.00 2.57
122 123 8.479313 TCATATGCATGATATTTCTACCGTTC 57.521 34.615 10.16 0.00 36.22 3.95
123 124 7.549134 TCATATGCATGATATTTCTACCGTTCC 59.451 37.037 10.16 0.00 36.22 3.62
124 125 5.290493 TGCATGATATTTCTACCGTTCCT 57.710 39.130 0.00 0.00 0.00 3.36
126 127 6.822442 TGCATGATATTTCTACCGTTCCTAA 58.178 36.000 0.00 0.00 0.00 2.69
129 130 9.431887 GCATGATATTTCTACCGTTCCTAAATA 57.568 33.333 0.00 0.00 0.00 1.40
137 138 7.530426 TCTACCGTTCCTAAATATAAGACCC 57.470 40.000 0.00 0.00 0.00 4.46
138 139 7.300658 TCTACCGTTCCTAAATATAAGACCCT 58.699 38.462 0.00 0.00 0.00 4.34
140 141 7.919385 ACCGTTCCTAAATATAAGACCCTTA 57.081 36.000 0.00 0.00 0.00 2.69
142 143 8.591940 ACCGTTCCTAAATATAAGACCCTTATC 58.408 37.037 2.81 0.00 0.00 1.75
154 155 8.694581 ATAAGACCCTTATCTATATACGGAGC 57.305 38.462 0.00 0.00 30.20 4.70
156 157 6.491383 AGACCCTTATCTATATACGGAGCAA 58.509 40.000 0.00 0.00 30.20 3.91
158 159 7.453752 AGACCCTTATCTATATACGGAGCAAAA 59.546 37.037 0.00 0.00 30.20 2.44
160 161 8.041323 ACCCTTATCTATATACGGAGCAAAATG 58.959 37.037 0.00 0.00 30.20 2.32
161 162 8.258007 CCCTTATCTATATACGGAGCAAAATGA 58.742 37.037 0.00 0.00 30.20 2.57
162 163 9.653287 CCTTATCTATATACGGAGCAAAATGAA 57.347 33.333 0.00 0.00 30.20 2.57
166 167 9.725019 ATCTATATACGGAGCAAAATGAATGAA 57.275 29.630 0.00 0.00 0.00 2.57
167 168 9.725019 TCTATATACGGAGCAAAATGAATGAAT 57.275 29.630 0.00 0.00 0.00 2.57
168 169 9.979270 CTATATACGGAGCAAAATGAATGAATC 57.021 33.333 0.00 0.00 0.00 2.52
169 170 6.949352 ATACGGAGCAAAATGAATGAATCT 57.051 33.333 0.00 0.00 0.00 2.40
171 172 6.124088 ACGGAGCAAAATGAATGAATCTAC 57.876 37.500 0.00 0.00 0.00 2.59
172 173 5.647658 ACGGAGCAAAATGAATGAATCTACA 59.352 36.000 0.00 0.00 0.00 2.74
173 174 5.967674 CGGAGCAAAATGAATGAATCTACAC 59.032 40.000 0.00 0.00 0.00 2.90
174 175 6.183360 CGGAGCAAAATGAATGAATCTACACT 60.183 38.462 0.00 0.00 0.00 3.55
175 176 7.192232 GGAGCAAAATGAATGAATCTACACTC 58.808 38.462 0.00 0.00 0.00 3.51
176 177 7.066766 GGAGCAAAATGAATGAATCTACACTCT 59.933 37.037 0.00 0.00 0.00 3.24
177 178 9.102757 GAGCAAAATGAATGAATCTACACTCTA 57.897 33.333 0.00 0.00 0.00 2.43
185 186 9.725019 TGAATGAATCTACACTCTAAAACATGT 57.275 29.630 0.00 0.00 0.00 3.21
186 187 9.979270 GAATGAATCTACACTCTAAAACATGTG 57.021 33.333 0.00 0.00 36.59 3.21
187 188 9.507329 AATGAATCTACACTCTAAAACATGTGT 57.493 29.630 0.00 0.00 44.46 3.72
198 199 9.692749 ACTCTAAAACATGTGTATATACATCCG 57.307 33.333 18.27 11.64 39.17 4.18
199 200 9.692749 CTCTAAAACATGTGTATATACATCCGT 57.307 33.333 18.27 12.21 39.17 4.69
215 216 6.911250 ACATCCGTATGTAGTCCATATTGA 57.089 37.500 0.00 0.00 44.66 2.57
216 217 7.297936 ACATCCGTATGTAGTCCATATTGAA 57.702 36.000 0.00 0.00 44.66 2.69
217 218 7.732025 ACATCCGTATGTAGTCCATATTGAAA 58.268 34.615 0.00 0.00 44.66 2.69
219 220 8.873830 CATCCGTATGTAGTCCATATTGAAATC 58.126 37.037 0.00 0.00 38.29 2.17
220 221 8.190326 TCCGTATGTAGTCCATATTGAAATCT 57.810 34.615 0.00 0.00 38.29 2.40
222 223 9.273016 CCGTATGTAGTCCATATTGAAATCTTT 57.727 33.333 0.00 0.00 38.29 2.52
252 253 8.959705 AAGAACTTATATTTAGAAACGGAGGG 57.040 34.615 0.00 0.00 0.00 4.30
270 271 5.178438 CGGAGGGAGTACTAAGTTACGATAC 59.822 48.000 0.00 0.00 0.00 2.24
332 333 9.448438 TGTGTAGTCTTATAAATGATGCAAGTT 57.552 29.630 0.00 0.00 0.00 2.66
366 367 5.047092 ACAATGGAAATTCAATTCGGCTCTT 60.047 36.000 0.00 0.00 0.00 2.85
367 368 4.439305 TGGAAATTCAATTCGGCTCTTG 57.561 40.909 0.00 0.00 0.00 3.02
484 485 6.667007 ACCTGCAAAATTTGAGACAAAAAG 57.333 33.333 10.26 0.00 0.00 2.27
490 491 9.171877 TGCAAAATTTGAGACAAAAAGGTTAAT 57.828 25.926 10.26 0.00 0.00 1.40
510 511 0.605589 TATTTTGGCCCGTGCAAAGG 59.394 50.000 0.00 2.63 40.13 3.11
547 548 4.615588 ACACCAAATGTTACCCCAAATG 57.384 40.909 0.00 0.00 38.98 2.32
554 555 1.203075 TGTTACCCCAAATGTCACCCC 60.203 52.381 0.00 0.00 0.00 4.95
590 591 4.213270 TCACAAACGAATCACTGTTGATCC 59.787 41.667 0.00 0.00 42.00 3.36
621 622 7.179927 CATGAAAATTGTCAAACATGCTTGA 57.820 32.000 7.45 7.45 32.89 3.02
662 784 4.595762 AAGCATGCTTGACAGTTTTCAT 57.404 36.364 31.49 2.69 34.60 2.57
663 785 5.710513 AAGCATGCTTGACAGTTTTCATA 57.289 34.783 31.49 0.00 34.60 2.15
671 793 6.017523 TGCTTGACAGTTTTCATATGAAACGA 60.018 34.615 26.69 13.35 43.01 3.85
675 797 4.759693 ACAGTTTTCATATGAAACGAGGCA 59.240 37.500 26.69 11.34 43.01 4.75
688 810 0.445436 CGAGGCAGCAGTGTTTCATC 59.555 55.000 0.00 0.00 0.00 2.92
693 815 1.733912 GCAGCAGTGTTTCATCGATGA 59.266 47.619 23.99 23.99 34.44 2.92
725 848 6.381498 TTTAGGATGACATTGGGAGTAACA 57.619 37.500 0.00 0.00 0.00 2.41
811 934 5.874810 TCTACAGGTAGCATTTGAATGTGAC 59.125 40.000 5.68 4.25 38.65 3.67
812 935 3.758554 ACAGGTAGCATTTGAATGTGACC 59.241 43.478 15.55 15.55 40.55 4.02
967 1494 0.320374 CGCTCACCAAACCCACTCTA 59.680 55.000 0.00 0.00 0.00 2.43
1001 1528 3.362797 AGAGCCGACGCGAACTGA 61.363 61.111 15.93 0.00 41.18 3.41
1271 1820 4.715534 TCTACACCAAAAGATCCCAACA 57.284 40.909 0.00 0.00 0.00 3.33
1675 2770 0.747283 GTTGGCTGGATCTGGAGCTG 60.747 60.000 0.00 0.00 35.42 4.24
1704 2800 0.250338 GTCCTTGCTGTCCCTCGTTT 60.250 55.000 0.00 0.00 0.00 3.60
1849 3204 8.462016 CCCCTAAAAGAATATAGTATTGCATGC 58.538 37.037 11.82 11.82 0.00 4.06
2179 3645 4.483476 AGCAAAAACCGTGTCTATCAAC 57.517 40.909 0.00 0.00 0.00 3.18
2188 3654 9.715121 AAAACCGTGTCTATCAACTTCTTTATA 57.285 29.630 0.00 0.00 0.00 0.98
2267 3733 7.440255 GGGATTATTGATGAAGCCATGAAAAAG 59.560 37.037 0.00 0.00 33.88 2.27
2360 3826 3.956199 CAGGTCCTTGGTCAATATGCATT 59.044 43.478 3.54 0.00 0.00 3.56
2804 4536 3.869065 TGCTAAGCTGGTTACCATACAC 58.131 45.455 3.88 0.00 30.82 2.90
2822 4554 7.016072 ACCATACACATTCAATCTTGGGAAAAA 59.984 33.333 0.00 0.00 0.00 1.94
2828 4560 9.709495 CACATTCAATCTTGGGAAAAAGAATTA 57.291 29.630 0.00 0.00 39.54 1.40
2862 4594 5.790593 TGTGGGTGATGAGTTTACTAGTTC 58.209 41.667 0.00 0.00 0.00 3.01
2899 4631 5.334802 CGATGTGCAATCTTTTTGTGGTCTA 60.335 40.000 0.00 0.00 0.00 2.59
3009 4742 4.074970 CCTGTCCTTATGGATATGTTGCC 58.925 47.826 0.00 0.00 45.29 4.52
3044 4777 3.634448 TCCTTGAGTGATGCTAGAGCTAC 59.366 47.826 2.72 0.22 42.66 3.58
3062 4795 0.179468 ACGGACCAAATCGTATGGGG 59.821 55.000 8.36 0.00 42.48 4.96
3070 4803 1.944032 AATCGTATGGGGTTACGCAC 58.056 50.000 1.15 0.00 43.52 5.34
3071 4804 1.117150 ATCGTATGGGGTTACGCACT 58.883 50.000 1.15 0.00 43.52 4.40
3072 4805 1.761449 TCGTATGGGGTTACGCACTA 58.239 50.000 1.15 0.00 43.52 2.74
3073 4806 2.098614 TCGTATGGGGTTACGCACTAA 58.901 47.619 1.15 0.00 43.52 2.24
3074 4807 2.159254 TCGTATGGGGTTACGCACTAAC 60.159 50.000 1.15 0.00 43.52 2.34
3075 4808 2.417107 CGTATGGGGTTACGCACTAACA 60.417 50.000 1.15 0.00 42.73 2.41
3076 4809 3.738899 CGTATGGGGTTACGCACTAACAT 60.739 47.826 1.15 0.00 42.73 2.71
3077 4810 2.102070 TGGGGTTACGCACTAACATG 57.898 50.000 1.15 0.00 37.10 3.21
3078 4811 1.348366 TGGGGTTACGCACTAACATGT 59.652 47.619 1.15 0.00 37.10 3.21
3079 4812 2.004733 GGGGTTACGCACTAACATGTC 58.995 52.381 0.00 0.00 37.10 3.06
3080 4813 2.613474 GGGGTTACGCACTAACATGTCA 60.613 50.000 0.00 0.00 37.10 3.58
3081 4814 3.068560 GGGTTACGCACTAACATGTCAA 58.931 45.455 0.00 0.00 37.10 3.18
3082 4815 3.120442 GGGTTACGCACTAACATGTCAAC 60.120 47.826 0.00 0.00 37.10 3.18
3083 4816 3.744426 GGTTACGCACTAACATGTCAACT 59.256 43.478 0.00 0.00 37.10 3.16
3084 4817 4.212636 GGTTACGCACTAACATGTCAACTT 59.787 41.667 0.00 0.00 37.10 2.66
3085 4818 3.878086 ACGCACTAACATGTCAACTTG 57.122 42.857 0.00 0.00 0.00 3.16
3086 4819 3.202906 ACGCACTAACATGTCAACTTGT 58.797 40.909 0.00 0.00 36.02 3.16
3087 4820 3.002246 ACGCACTAACATGTCAACTTGTG 59.998 43.478 0.00 2.06 34.92 3.33
3088 4821 3.606846 CGCACTAACATGTCAACTTGTGG 60.607 47.826 0.00 2.88 34.92 4.17
3107 4840 1.479389 GGCTGGATGTTAGGGGGAATG 60.479 57.143 0.00 0.00 0.00 2.67
3109 4842 1.145738 CTGGATGTTAGGGGGAATGGG 59.854 57.143 0.00 0.00 0.00 4.00
3111 4844 0.482887 GATGTTAGGGGGAATGGGGG 59.517 60.000 0.00 0.00 0.00 5.40
3112 4845 0.048749 ATGTTAGGGGGAATGGGGGA 59.951 55.000 0.00 0.00 0.00 4.81
3113 4846 0.626277 TGTTAGGGGGAATGGGGGAG 60.626 60.000 0.00 0.00 0.00 4.30
3115 4848 2.593681 TTAGGGGGAATGGGGGAGGG 62.594 65.000 0.00 0.00 0.00 4.30
3119 4852 4.143301 GGAATGGGGGAGGGGCAC 62.143 72.222 0.00 0.00 0.00 5.01
3600 5350 5.008415 CCATTGGTGAGCTCTGTATTGAATC 59.992 44.000 16.19 0.00 0.00 2.52
3652 5402 5.303747 TGAAATGGCACGAATACGAATTT 57.696 34.783 0.00 0.00 42.66 1.82
3761 5512 5.885230 TGCATAGCTATATTGCCATGAAC 57.115 39.130 18.39 5.37 34.77 3.18
3960 5819 2.122989 GGAGGACGGAGGGGCATA 60.123 66.667 0.00 0.00 0.00 3.14
3961 5820 1.536662 GGAGGACGGAGGGGCATAT 60.537 63.158 0.00 0.00 0.00 1.78
4177 6045 2.797278 CGCCACCTACCTGCTAGGG 61.797 68.421 7.06 0.00 46.21 3.53
4335 6214 2.125673 CCCTCCGAAACGTGCGAT 60.126 61.111 12.05 0.00 0.00 4.58
4357 6236 2.285977 GGGATTTACGTGGTAGCCAAG 58.714 52.381 0.00 0.00 38.88 3.61
4434 6314 6.260271 ACAGCTGTATTGATGTGAGATGATTG 59.740 38.462 20.16 0.00 35.09 2.67
4925 7218 3.066203 ACCAGTGTTTTTCCTGCTAAACG 59.934 43.478 0.00 0.00 37.12 3.60
5071 7364 6.169800 TCTTTTGTTGGTCGACATATCATCA 58.830 36.000 18.91 8.37 0.00 3.07
5096 7389 2.038557 GGCCTGAACTTCTGTTGGTAGA 59.961 50.000 0.00 0.00 36.39 2.59
5645 7949 5.255397 ACCAACTGGGATTTTCTCATGTA 57.745 39.130 0.00 0.00 41.15 2.29
5666 7970 9.636879 CATGTATCAATCGATTCAGAGAAGTAT 57.363 33.333 7.92 0.00 33.09 2.12
5705 8009 0.321830 TTCCCTAAAAAGGACCGCCG 60.322 55.000 0.00 0.00 39.96 6.46
5720 8024 2.619646 ACCGCCGTAAACATGAAAACTT 59.380 40.909 0.00 0.00 0.00 2.66
5782 8086 1.528309 CCAAGGCCAACTCCAACGT 60.528 57.895 5.01 0.00 0.00 3.99
5827 8136 3.192844 TGTCCGTTTGAGTCTAGATGGAC 59.807 47.826 17.94 17.94 44.64 4.02
5828 8137 3.192844 GTCCGTTTGAGTCTAGATGGACA 59.807 47.826 19.02 1.63 44.09 4.02
5829 8138 3.830178 TCCGTTTGAGTCTAGATGGACAA 59.170 43.478 0.00 0.00 38.57 3.18
5830 8139 4.282449 TCCGTTTGAGTCTAGATGGACAAA 59.718 41.667 0.00 4.39 38.57 2.83
5831 8140 4.994852 CCGTTTGAGTCTAGATGGACAAAA 59.005 41.667 13.72 0.00 38.57 2.44
5832 8141 5.468746 CCGTTTGAGTCTAGATGGACAAAAA 59.531 40.000 13.72 0.00 38.57 1.94
5850 8159 4.573021 AAAAACATGGCCCAATATGCTT 57.427 36.364 0.00 0.00 0.00 3.91
5851 8160 4.573021 AAAACATGGCCCAATATGCTTT 57.427 36.364 0.00 0.00 0.00 3.51
5852 8161 3.547054 AACATGGCCCAATATGCTTTG 57.453 42.857 0.00 0.00 0.00 2.77
5853 8162 2.469952 ACATGGCCCAATATGCTTTGT 58.530 42.857 0.00 0.00 0.00 2.83
5854 8163 2.168936 ACATGGCCCAATATGCTTTGTG 59.831 45.455 0.00 0.00 0.00 3.33
5855 8164 1.935799 TGGCCCAATATGCTTTGTGT 58.064 45.000 0.00 0.00 0.00 3.72
5856 8165 1.824230 TGGCCCAATATGCTTTGTGTC 59.176 47.619 0.00 0.00 0.00 3.67
5857 8166 2.102578 GGCCCAATATGCTTTGTGTCT 58.897 47.619 0.00 0.00 0.00 3.41
5858 8167 2.159198 GGCCCAATATGCTTTGTGTCTG 60.159 50.000 0.00 0.00 0.00 3.51
5859 8168 2.493278 GCCCAATATGCTTTGTGTCTGT 59.507 45.455 0.00 0.00 0.00 3.41
5860 8169 3.056607 GCCCAATATGCTTTGTGTCTGTT 60.057 43.478 0.00 0.00 0.00 3.16
5861 8170 4.561326 GCCCAATATGCTTTGTGTCTGTTT 60.561 41.667 0.00 0.00 0.00 2.83
5862 8171 4.925054 CCCAATATGCTTTGTGTCTGTTTG 59.075 41.667 0.00 0.00 0.00 2.93
5863 8172 5.278907 CCCAATATGCTTTGTGTCTGTTTGA 60.279 40.000 0.00 0.00 0.00 2.69
5864 8173 5.860182 CCAATATGCTTTGTGTCTGTTTGAG 59.140 40.000 0.00 0.00 0.00 3.02
5865 8174 6.441274 CAATATGCTTTGTGTCTGTTTGAGT 58.559 36.000 0.00 0.00 0.00 3.41
5866 8175 4.558538 ATGCTTTGTGTCTGTTTGAGTC 57.441 40.909 0.00 0.00 0.00 3.36
5867 8176 3.609853 TGCTTTGTGTCTGTTTGAGTCT 58.390 40.909 0.00 0.00 0.00 3.24
5868 8177 4.765273 TGCTTTGTGTCTGTTTGAGTCTA 58.235 39.130 0.00 0.00 0.00 2.59
5869 8178 4.811024 TGCTTTGTGTCTGTTTGAGTCTAG 59.189 41.667 0.00 0.00 0.00 2.43
5870 8179 5.050490 GCTTTGTGTCTGTTTGAGTCTAGA 58.950 41.667 0.00 0.00 0.00 2.43
5871 8180 5.698545 GCTTTGTGTCTGTTTGAGTCTAGAT 59.301 40.000 0.00 0.00 0.00 1.98
5872 8181 6.347240 GCTTTGTGTCTGTTTGAGTCTAGATG 60.347 42.308 0.00 0.00 0.00 2.90
5873 8182 5.139435 TGTGTCTGTTTGAGTCTAGATGG 57.861 43.478 0.00 0.00 0.00 3.51
5874 8183 4.832823 TGTGTCTGTTTGAGTCTAGATGGA 59.167 41.667 0.00 0.00 0.00 3.41
5908 8217 2.263741 CCATATGCTTCCTGCCGCC 61.264 63.158 0.00 0.00 42.00 6.13
5909 8218 1.526686 CATATGCTTCCTGCCGCCA 60.527 57.895 0.00 0.00 42.00 5.69
5919 8228 4.680237 TGCCGCCACCTCGTCTTG 62.680 66.667 0.00 0.00 0.00 3.02
5924 8240 3.059982 CCACCTCGTCTTGGCTGA 58.940 61.111 0.00 0.00 0.00 4.26
5932 8248 1.300931 GTCTTGGCTGACGCTGTCA 60.301 57.895 10.24 10.24 40.50 3.58
5961 8330 1.164041 ACGTTGTTGGCCCGAAGAAG 61.164 55.000 0.00 0.00 0.00 2.85
5962 8331 1.852067 CGTTGTTGGCCCGAAGAAGG 61.852 60.000 0.00 0.00 0.00 3.46
5981 8350 4.760047 GCGCACCGTGGTGGAGAT 62.760 66.667 20.00 0.00 45.49 2.75
5982 8351 2.815211 CGCACCGTGGTGGAGATG 60.815 66.667 20.00 0.00 45.49 2.90
6044 8413 3.973267 GACCGTCGCTGTGGAGAGC 62.973 68.421 0.00 0.00 35.46 4.09
6102 8471 1.988834 GCCGACCCTTATTGTTGCCG 61.989 60.000 0.00 0.00 0.00 5.69
6105 8474 1.988834 GACCCTTATTGTTGCCGCGG 61.989 60.000 24.05 24.05 0.00 6.46
6144 8513 2.115266 CCCGTCCACCCAAGCTTT 59.885 61.111 0.00 0.00 0.00 3.51
6151 8520 1.072331 TCCACCCAAGCTTTCAGAGTC 59.928 52.381 0.00 0.00 0.00 3.36
6155 8524 0.603707 CCAAGCTTTCAGAGTCGCCA 60.604 55.000 0.00 0.00 0.00 5.69
6166 8535 2.173382 GTCGCCACGCATGTCAAC 59.827 61.111 0.00 0.00 0.00 3.18
6170 8539 2.860293 CCACGCATGTCAACGACC 59.140 61.111 5.71 0.00 0.00 4.79
6172 8541 2.358247 ACGCATGTCAACGACCCC 60.358 61.111 5.71 0.00 0.00 4.95
6189 8558 0.952010 CCCGTCAACCTTTGGTACCG 60.952 60.000 7.57 0.00 33.12 4.02
6215 8584 2.833582 ATGACCCGATCGCGTCCT 60.834 61.111 25.58 15.93 35.23 3.85
6233 8602 0.107993 CTGCTTCTCCATTCGCCTCA 60.108 55.000 0.00 0.00 0.00 3.86
6240 8609 2.579201 CATTCGCCTCAGGACGGT 59.421 61.111 0.00 0.00 0.00 4.83
6243 8612 2.558554 ATTCGCCTCAGGACGGTTCG 62.559 60.000 0.00 0.00 0.00 3.95
6262 8631 1.137513 GTCTGAAACGGGTGACTTCG 58.862 55.000 0.00 0.00 0.00 3.79
6265 8634 1.155424 TGAAACGGGTGACTTCGTGC 61.155 55.000 5.47 2.99 39.70 5.34
6276 8645 0.103208 ACTTCGTGCCGATCATCCTC 59.897 55.000 0.00 0.00 35.23 3.71
6286 8655 0.249657 GATCATCCTCGGTGTGCCTC 60.250 60.000 0.00 0.00 0.00 4.70
6308 8677 2.686915 CTCTTTGATCTCAATGCCACCC 59.313 50.000 0.00 0.00 35.55 4.61
6309 8678 1.402968 CTTTGATCTCAATGCCACCCG 59.597 52.381 0.00 0.00 35.55 5.28
6331 8700 1.021202 TTGCCGGTCAGTTCACTTTG 58.979 50.000 1.90 0.00 0.00 2.77
6339 8708 3.314357 GGTCAGTTCACTTTGTGGGTTAC 59.686 47.826 0.00 0.00 33.87 2.50
6373 8742 7.492669 CACTTCGTAACTGGATGATCATAAAGT 59.507 37.037 8.54 12.10 0.00 2.66
6381 8750 7.891561 ACTGGATGATCATAAAGTAGCTCTAC 58.108 38.462 17.19 0.00 36.35 2.59
6388 8757 9.015367 TGATCATAAAGTAGCTCTACAGGTATC 57.985 37.037 9.44 5.47 38.48 2.24
6390 8759 8.998277 TCATAAAGTAGCTCTACAGGTATCTT 57.002 34.615 9.44 0.00 38.48 2.40
6396 8765 6.668283 AGTAGCTCTACAGGTATCTTGGAAAA 59.332 38.462 9.44 0.00 38.48 2.29
6425 8794 1.747355 GGGTTGCATGGATCAAGACTG 59.253 52.381 0.00 0.00 0.00 3.51
6426 8795 2.618816 GGGTTGCATGGATCAAGACTGA 60.619 50.000 0.00 0.00 35.56 3.41
6434 8803 5.220815 GCATGGATCAAGACTGAGATTTGTC 60.221 44.000 0.00 0.00 34.23 3.18
6437 8806 3.667497 TCAAGACTGAGATTTGTCGCT 57.333 42.857 0.00 0.00 38.16 4.93
6438 8807 3.579709 TCAAGACTGAGATTTGTCGCTC 58.420 45.455 0.00 0.00 38.16 5.03
6439 8808 2.663826 AGACTGAGATTTGTCGCTCC 57.336 50.000 0.00 0.00 38.16 4.70
6440 8809 1.135257 AGACTGAGATTTGTCGCTCCG 60.135 52.381 0.00 0.00 38.16 4.63
6441 8810 0.603569 ACTGAGATTTGTCGCTCCGT 59.396 50.000 0.00 0.00 0.00 4.69
6442 8811 0.994995 CTGAGATTTGTCGCTCCGTG 59.005 55.000 0.00 0.00 0.00 4.94
6443 8812 0.317160 TGAGATTTGTCGCTCCGTGT 59.683 50.000 0.00 0.00 0.00 4.49
6444 8813 0.716108 GAGATTTGTCGCTCCGTGTG 59.284 55.000 0.00 0.00 0.00 3.82
6445 8814 0.317160 AGATTTGTCGCTCCGTGTGA 59.683 50.000 0.00 0.00 0.00 3.58
6449 8818 2.050714 GTCGCTCCGTGTGACGAA 60.051 61.111 0.00 0.00 46.05 3.85
6450 8819 2.081212 GTCGCTCCGTGTGACGAAG 61.081 63.158 0.00 0.00 46.05 3.79
6451 8820 2.254350 CGCTCCGTGTGACGAAGA 59.746 61.111 0.00 0.00 46.05 2.87
6452 8821 1.371267 CGCTCCGTGTGACGAAGAA 60.371 57.895 0.00 0.00 46.05 2.52
6453 8822 0.937699 CGCTCCGTGTGACGAAGAAA 60.938 55.000 0.00 0.00 46.05 2.52
6454 8823 1.429463 GCTCCGTGTGACGAAGAAAT 58.571 50.000 0.00 0.00 46.05 2.17
6455 8824 2.602878 GCTCCGTGTGACGAAGAAATA 58.397 47.619 0.00 0.00 46.05 1.40
6456 8825 3.187700 GCTCCGTGTGACGAAGAAATAT 58.812 45.455 0.00 0.00 46.05 1.28
6457 8826 3.243177 GCTCCGTGTGACGAAGAAATATC 59.757 47.826 0.00 0.00 46.05 1.63
6458 8827 4.673441 CTCCGTGTGACGAAGAAATATCT 58.327 43.478 0.00 0.00 46.05 1.98
6460 8829 5.475719 TCCGTGTGACGAAGAAATATCTTT 58.524 37.500 0.00 0.00 45.91 2.52
6461 8830 5.347635 TCCGTGTGACGAAGAAATATCTTTG 59.652 40.000 0.00 4.62 45.91 2.77
6466 8835 3.990318 CGAAGAAATATCTTTGGGCCC 57.010 47.619 17.59 17.59 45.91 5.80
6467 8836 3.555966 CGAAGAAATATCTTTGGGCCCT 58.444 45.455 25.70 4.09 45.91 5.19
6468 8837 3.565902 CGAAGAAATATCTTTGGGCCCTC 59.434 47.826 25.70 8.72 45.91 4.30
6469 8838 4.687219 CGAAGAAATATCTTTGGGCCCTCT 60.687 45.833 25.70 11.22 45.91 3.69
6470 8839 4.445557 AGAAATATCTTTGGGCCCTCTC 57.554 45.455 25.70 5.96 29.15 3.20
6471 8840 2.938956 AATATCTTTGGGCCCTCTCG 57.061 50.000 25.70 9.00 0.00 4.04
6472 8841 1.059913 ATATCTTTGGGCCCTCTCGG 58.940 55.000 25.70 8.84 0.00 4.63
6473 8842 0.326238 TATCTTTGGGCCCTCTCGGT 60.326 55.000 25.70 7.65 0.00 4.69
6474 8843 0.326238 ATCTTTGGGCCCTCTCGGTA 60.326 55.000 25.70 0.00 0.00 4.02
6475 8844 0.976073 TCTTTGGGCCCTCTCGGTAG 60.976 60.000 25.70 9.41 0.00 3.18
6476 8845 1.229400 TTTGGGCCCTCTCGGTAGT 60.229 57.895 25.70 0.00 0.00 2.73
6477 8846 0.041535 TTTGGGCCCTCTCGGTAGTA 59.958 55.000 25.70 0.00 0.00 1.82
6478 8847 0.685458 TTGGGCCCTCTCGGTAGTAC 60.685 60.000 25.70 0.00 0.00 2.73
6479 8848 1.076485 GGGCCCTCTCGGTAGTACA 60.076 63.158 17.04 0.00 0.00 2.90
6480 8849 0.685458 GGGCCCTCTCGGTAGTACAA 60.685 60.000 17.04 0.00 0.00 2.41
6481 8850 0.459078 GGCCCTCTCGGTAGTACAAC 59.541 60.000 2.06 0.00 0.00 3.32
6482 8851 1.180029 GCCCTCTCGGTAGTACAACA 58.820 55.000 2.06 0.00 0.00 3.33
6483 8852 1.755380 GCCCTCTCGGTAGTACAACAT 59.245 52.381 2.06 0.00 0.00 2.71
6484 8853 2.223758 GCCCTCTCGGTAGTACAACATC 60.224 54.545 2.06 0.00 0.00 3.06
6485 8854 3.021695 CCCTCTCGGTAGTACAACATCA 58.978 50.000 2.06 0.00 0.00 3.07
6486 8855 3.637229 CCCTCTCGGTAGTACAACATCAT 59.363 47.826 2.06 0.00 0.00 2.45
6487 8856 4.499865 CCCTCTCGGTAGTACAACATCATG 60.500 50.000 2.06 0.00 0.00 3.07
6488 8857 4.338400 CCTCTCGGTAGTACAACATCATGA 59.662 45.833 0.00 0.00 0.00 3.07
6489 8858 5.163550 CCTCTCGGTAGTACAACATCATGAA 60.164 44.000 0.00 0.00 0.00 2.57
6490 8859 6.275494 TCTCGGTAGTACAACATCATGAAA 57.725 37.500 0.00 0.00 0.00 2.69
6491 8860 6.873997 TCTCGGTAGTACAACATCATGAAAT 58.126 36.000 0.00 0.00 0.00 2.17
6492 8861 8.002984 TCTCGGTAGTACAACATCATGAAATA 57.997 34.615 0.00 0.00 0.00 1.40
6493 8862 8.135529 TCTCGGTAGTACAACATCATGAAATAG 58.864 37.037 0.00 0.00 0.00 1.73
6494 8863 6.700081 TCGGTAGTACAACATCATGAAATAGC 59.300 38.462 0.00 0.00 0.00 2.97
6495 8864 6.701841 CGGTAGTACAACATCATGAAATAGCT 59.298 38.462 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 9.270640 ACTAGTGTATGATACTACCTTCGTAAG 57.729 37.037 4.03 0.00 0.00 2.34
72 73 9.434420 GATACTAGTGTATGATACTACCTTCGT 57.566 37.037 5.39 2.35 39.29 3.85
97 98 7.549134 GGAACGGTAGAAATATCATGCATATGA 59.451 37.037 6.97 0.00 46.67 2.15
100 101 7.004555 AGGAACGGTAGAAATATCATGCATA 57.995 36.000 0.00 0.00 0.00 3.14
103 104 7.724305 TTTAGGAACGGTAGAAATATCATGC 57.276 36.000 0.00 0.00 0.00 4.06
111 112 8.424133 GGGTCTTATATTTAGGAACGGTAGAAA 58.576 37.037 0.00 0.00 0.00 2.52
112 113 7.786464 AGGGTCTTATATTTAGGAACGGTAGAA 59.214 37.037 0.00 0.00 0.00 2.10
113 114 7.300658 AGGGTCTTATATTTAGGAACGGTAGA 58.699 38.462 0.00 0.00 0.00 2.59
114 115 7.536159 AGGGTCTTATATTTAGGAACGGTAG 57.464 40.000 0.00 0.00 0.00 3.18
115 116 7.919385 AAGGGTCTTATATTTAGGAACGGTA 57.081 36.000 0.00 0.00 0.00 4.02
116 117 6.819947 AAGGGTCTTATATTTAGGAACGGT 57.180 37.500 0.00 0.00 0.00 4.83
117 118 8.813951 AGATAAGGGTCTTATATTTAGGAACGG 58.186 37.037 0.73 0.00 0.00 4.44
129 130 8.280084 TGCTCCGTATATAGATAAGGGTCTTAT 58.720 37.037 9.12 0.33 37.66 1.73
130 131 7.636579 TGCTCCGTATATAGATAAGGGTCTTA 58.363 38.462 9.12 0.00 37.66 2.10
133 134 6.770746 TTGCTCCGTATATAGATAAGGGTC 57.229 41.667 9.12 3.16 37.66 4.46
134 135 7.549147 TTTTGCTCCGTATATAGATAAGGGT 57.451 36.000 9.12 0.00 37.66 4.34
135 136 8.258007 TCATTTTGCTCCGTATATAGATAAGGG 58.742 37.037 9.12 0.36 37.66 3.95
140 141 9.725019 TTCATTCATTTTGCTCCGTATATAGAT 57.275 29.630 0.00 0.00 0.00 1.98
142 143 9.979270 GATTCATTCATTTTGCTCCGTATATAG 57.021 33.333 0.00 0.00 0.00 1.31
144 145 8.627208 AGATTCATTCATTTTGCTCCGTATAT 57.373 30.769 0.00 0.00 0.00 0.86
145 146 8.988934 GTAGATTCATTCATTTTGCTCCGTATA 58.011 33.333 0.00 0.00 0.00 1.47
147 148 6.821160 TGTAGATTCATTCATTTTGCTCCGTA 59.179 34.615 0.00 0.00 0.00 4.02
148 149 5.647658 TGTAGATTCATTCATTTTGCTCCGT 59.352 36.000 0.00 0.00 0.00 4.69
151 152 7.983307 AGAGTGTAGATTCATTCATTTTGCTC 58.017 34.615 0.00 0.00 0.00 4.26
152 153 7.934855 AGAGTGTAGATTCATTCATTTTGCT 57.065 32.000 0.00 0.00 0.00 3.91
160 161 9.979270 CACATGTTTTAGAGTGTAGATTCATTC 57.021 33.333 0.00 0.00 0.00 2.67
161 162 9.507329 ACACATGTTTTAGAGTGTAGATTCATT 57.493 29.630 0.00 0.00 42.84 2.57
172 173 9.692749 CGGATGTATATACACATGTTTTAGAGT 57.307 33.333 17.69 0.00 39.25 3.24
173 174 9.692749 ACGGATGTATATACACATGTTTTAGAG 57.307 33.333 17.69 2.80 39.25 2.43
177 178 9.772973 ACATACGGATGTATATACACATGTTTT 57.227 29.630 12.79 0.08 44.77 2.43
180 181 9.239551 ACTACATACGGATGTATATACACATGT 57.760 33.333 20.64 19.68 45.42 3.21
183 184 7.884354 TGGACTACATACGGATGTATATACACA 59.116 37.037 20.64 11.15 45.42 3.72
189 190 9.689501 TCAATATGGACTACATACGGATGTATA 57.310 33.333 20.64 11.30 45.42 1.47
190 191 8.589701 TCAATATGGACTACATACGGATGTAT 57.410 34.615 20.64 9.39 45.42 2.29
195 196 8.190326 AGATTTCAATATGGACTACATACGGA 57.810 34.615 0.00 0.00 44.41 4.69
196 197 8.833231 AAGATTTCAATATGGACTACATACGG 57.167 34.615 0.00 0.00 44.41 4.02
226 227 9.392259 CCCTCCGTTTCTAAATATAAGTTCTTT 57.608 33.333 0.00 0.00 0.00 2.52
227 228 8.765517 TCCCTCCGTTTCTAAATATAAGTTCTT 58.234 33.333 0.00 0.00 0.00 2.52
228 229 8.315220 TCCCTCCGTTTCTAAATATAAGTTCT 57.685 34.615 0.00 0.00 0.00 3.01
229 230 8.202811 ACTCCCTCCGTTTCTAAATATAAGTTC 58.797 37.037 0.00 0.00 0.00 3.01
230 231 8.087303 ACTCCCTCCGTTTCTAAATATAAGTT 57.913 34.615 0.00 0.00 0.00 2.66
232 233 8.858094 AGTACTCCCTCCGTTTCTAAATATAAG 58.142 37.037 0.00 0.00 0.00 1.73
234 235 9.866655 TTAGTACTCCCTCCGTTTCTAAATATA 57.133 33.333 0.00 0.00 0.00 0.86
235 236 8.773033 TTAGTACTCCCTCCGTTTCTAAATAT 57.227 34.615 0.00 0.00 0.00 1.28
236 237 7.836183 ACTTAGTACTCCCTCCGTTTCTAAATA 59.164 37.037 0.00 0.00 0.00 1.40
237 238 6.666980 ACTTAGTACTCCCTCCGTTTCTAAAT 59.333 38.462 0.00 0.00 0.00 1.40
238 239 6.012745 ACTTAGTACTCCCTCCGTTTCTAAA 58.987 40.000 0.00 0.00 0.00 1.85
240 241 5.184892 ACTTAGTACTCCCTCCGTTTCTA 57.815 43.478 0.00 0.00 0.00 2.10
241 242 4.044946 ACTTAGTACTCCCTCCGTTTCT 57.955 45.455 0.00 0.00 0.00 2.52
242 243 4.797800 AACTTAGTACTCCCTCCGTTTC 57.202 45.455 0.00 0.00 0.00 2.78
243 244 4.156739 CGTAACTTAGTACTCCCTCCGTTT 59.843 45.833 0.00 0.00 0.00 3.60
246 247 3.535561 TCGTAACTTAGTACTCCCTCCG 58.464 50.000 0.00 0.00 0.00 4.63
247 248 6.204495 CAGTATCGTAACTTAGTACTCCCTCC 59.796 46.154 0.00 0.00 0.00 4.30
248 249 6.765512 ACAGTATCGTAACTTAGTACTCCCTC 59.234 42.308 0.00 0.00 0.00 4.30
250 251 6.017523 GGACAGTATCGTAACTTAGTACTCCC 60.018 46.154 0.00 0.00 0.00 4.30
251 252 6.540189 TGGACAGTATCGTAACTTAGTACTCC 59.460 42.308 0.00 0.00 0.00 3.85
252 253 7.279758 AGTGGACAGTATCGTAACTTAGTACTC 59.720 40.741 0.00 0.00 0.00 2.59
286 287 5.057149 CACATAGTGGGAGTAACATAAGGC 58.943 45.833 0.00 0.00 0.00 4.35
332 333 9.482627 AATTGAATTTCCATTGTTTTAACGCTA 57.517 25.926 0.00 0.00 0.00 4.26
484 485 3.191669 GCACGGGCCAAAATAATTAACC 58.808 45.455 4.39 0.00 0.00 2.85
490 491 1.001406 CCTTTGCACGGGCCAAAATAA 59.999 47.619 7.46 0.00 40.13 1.40
581 582 1.731709 TCATGCGAAACGGATCAACAG 59.268 47.619 0.00 0.00 35.39 3.16
590 591 4.945292 TTGACAATTTTCATGCGAAACG 57.055 36.364 0.00 0.00 40.84 3.60
621 622 4.332819 GCTTGAGACACTAACACAAACTGT 59.667 41.667 0.00 0.00 32.89 3.55
622 623 4.332543 TGCTTGAGACACTAACACAAACTG 59.667 41.667 0.00 0.00 0.00 3.16
662 784 1.001974 ACACTGCTGCCTCGTTTCATA 59.998 47.619 0.00 0.00 0.00 2.15
663 785 0.250467 ACACTGCTGCCTCGTTTCAT 60.250 50.000 0.00 0.00 0.00 2.57
671 793 0.035317 TCGATGAAACACTGCTGCCT 59.965 50.000 0.00 0.00 0.00 4.75
866 989 3.390521 CACGTGCTCCCTGGCCTA 61.391 66.667 0.82 0.00 0.00 3.93
893 1016 1.534028 CACGCGGAAATTCAATTCGG 58.466 50.000 12.47 0.00 34.00 4.30
967 1494 3.279434 GCTCTGATCGGGGTTTTGTAAT 58.721 45.455 2.68 0.00 0.00 1.89
1492 2587 4.082523 CCGCCGAGCCTTCCTCAA 62.083 66.667 0.00 0.00 40.78 3.02
1675 2770 2.046217 GCAAGGACGAGGAACCCC 60.046 66.667 0.00 0.00 0.00 4.95
1704 2800 3.583966 AGGGTACGTCCACTTATTTCCAA 59.416 43.478 0.00 0.00 38.11 3.53
1849 3204 2.094258 AGAGCATACACAATCAAACGCG 59.906 45.455 3.53 3.53 0.00 6.01
2188 3654 9.454859 CTCCCTAAAAACAATAAGAGTCAAGAT 57.545 33.333 0.00 0.00 0.00 2.40
2267 3733 6.368791 GGATAAAACCTTTTTGACATGAAGGC 59.631 38.462 14.22 1.66 42.92 4.35
2360 3826 9.889128 AAACAGAAAGAAGGAATTTTCATTTCA 57.111 25.926 12.34 0.00 36.11 2.69
2411 4136 7.255451 CCATAAGAAAACAAACACTAAGCTCCA 60.255 37.037 0.00 0.00 0.00 3.86
2692 4421 4.135747 TGTGGAAGCAATGATCACGATA 57.864 40.909 0.00 0.00 0.00 2.92
2804 4536 9.154847 GGTAATTCTTTTTCCCAAGATTGAATG 57.845 33.333 0.00 0.00 32.69 2.67
2822 4554 4.898861 ACCCACAACACAATTGGTAATTCT 59.101 37.500 10.83 0.00 0.00 2.40
2828 4560 2.151502 TCACCCACAACACAATTGGT 57.848 45.000 10.83 2.02 0.00 3.67
2862 4594 0.926155 CACATCGAGTTCATCTGGCG 59.074 55.000 0.00 0.00 0.00 5.69
2899 4631 2.299297 AGTTACGCCTACAAGCAGAAGT 59.701 45.455 0.00 0.00 0.00 3.01
3009 4742 5.063204 TCACTCAAGGAAATACAGTGTTGG 58.937 41.667 0.00 0.00 36.61 3.77
3044 4777 0.179468 ACCCCATACGATTTGGTCCG 59.821 55.000 0.00 0.00 31.99 4.79
3062 4795 4.985044 AGTTGACATGTTAGTGCGTAAC 57.015 40.909 0.00 2.53 41.45 2.50
3070 4803 3.058016 CCAGCCACAAGTTGACATGTTAG 60.058 47.826 10.54 0.00 0.00 2.34
3071 4804 2.884012 CCAGCCACAAGTTGACATGTTA 59.116 45.455 10.54 0.00 0.00 2.41
3072 4805 1.682854 CCAGCCACAAGTTGACATGTT 59.317 47.619 10.54 0.00 0.00 2.71
3073 4806 1.133823 TCCAGCCACAAGTTGACATGT 60.134 47.619 10.54 0.00 0.00 3.21
3074 4807 1.608055 TCCAGCCACAAGTTGACATG 58.392 50.000 10.54 0.00 0.00 3.21
3075 4808 2.165167 CATCCAGCCACAAGTTGACAT 58.835 47.619 10.54 0.00 0.00 3.06
3076 4809 1.133823 ACATCCAGCCACAAGTTGACA 60.134 47.619 10.54 0.00 0.00 3.58
3077 4810 1.609208 ACATCCAGCCACAAGTTGAC 58.391 50.000 10.54 0.00 0.00 3.18
3078 4811 2.363306 AACATCCAGCCACAAGTTGA 57.637 45.000 10.54 0.00 0.00 3.18
3079 4812 2.489329 CCTAACATCCAGCCACAAGTTG 59.511 50.000 0.00 0.00 0.00 3.16
3080 4813 2.555227 CCCTAACATCCAGCCACAAGTT 60.555 50.000 0.00 0.00 0.00 2.66
3081 4814 1.004745 CCCTAACATCCAGCCACAAGT 59.995 52.381 0.00 0.00 0.00 3.16
3082 4815 1.683011 CCCCTAACATCCAGCCACAAG 60.683 57.143 0.00 0.00 0.00 3.16
3083 4816 0.331278 CCCCTAACATCCAGCCACAA 59.669 55.000 0.00 0.00 0.00 3.33
3084 4817 1.570857 CCCCCTAACATCCAGCCACA 61.571 60.000 0.00 0.00 0.00 4.17
3085 4818 1.227383 CCCCCTAACATCCAGCCAC 59.773 63.158 0.00 0.00 0.00 5.01
3086 4819 0.551377 TTCCCCCTAACATCCAGCCA 60.551 55.000 0.00 0.00 0.00 4.75
3087 4820 0.853530 ATTCCCCCTAACATCCAGCC 59.146 55.000 0.00 0.00 0.00 4.85
3088 4821 1.479389 CCATTCCCCCTAACATCCAGC 60.479 57.143 0.00 0.00 0.00 4.85
3652 5402 1.476085 CAGTGAACAACCAAACAGGCA 59.524 47.619 0.00 0.00 43.14 4.75
3761 5512 9.599866 TTGAGTCATGTAGAACAAGGTATAATG 57.400 33.333 0.00 0.00 0.00 1.90
4049 5914 4.127744 CCACACCCCGCCATGGAT 62.128 66.667 18.40 0.00 42.00 3.41
4250 6129 2.029964 GTTCGAGCCCGTGACCAA 59.970 61.111 0.00 0.00 37.05 3.67
4256 6135 2.968206 GTACCTGTTCGAGCCCGT 59.032 61.111 0.00 0.00 37.05 5.28
4335 6214 0.542805 GGCTACCACGTAAATCCCCA 59.457 55.000 0.00 0.00 0.00 4.96
4357 6236 5.514274 TGAAAAACCAATTCAGTCCTGTC 57.486 39.130 0.00 0.00 33.15 3.51
4434 6314 0.178767 GCCCTGGAAATGGATTTGGC 59.821 55.000 0.00 0.00 31.06 4.52
4736 6969 2.898729 AGTATCAGAGGTCAATGGCG 57.101 50.000 0.00 0.00 0.00 5.69
4737 6970 3.471680 GGAAGTATCAGAGGTCAATGGC 58.528 50.000 0.00 0.00 0.00 4.40
4925 7218 2.035066 ACATCAAGACAGCAAAACCAGC 59.965 45.455 0.00 0.00 0.00 4.85
5071 7364 3.010584 ACCAACAGAAGTTCAGGCCATAT 59.989 43.478 5.01 0.00 35.28 1.78
5096 7389 5.130477 TCCTTCCACAGTTAGAAACTCAGTT 59.870 40.000 0.00 0.00 40.46 3.16
5552 7856 7.915293 TCGCAAAGAAATATTTCTAAGGACA 57.085 32.000 26.90 10.29 46.22 4.02
5645 7949 8.637099 TCTCAATACTTCTCTGAATCGATTGAT 58.363 33.333 16.96 0.00 33.08 2.57
5666 7970 1.051008 TCTGCTGGAGTTGCTCTCAA 58.949 50.000 10.56 0.40 44.40 3.02
5705 8009 6.918892 AAAAGGCCAAGTTTTCATGTTTAC 57.081 33.333 5.01 0.00 0.00 2.01
5720 8024 2.151202 CTTGAGCGAGTTAAAAGGCCA 58.849 47.619 5.01 0.00 0.00 5.36
5782 8086 3.853104 CAGACTAAATGGGTCGGCA 57.147 52.632 0.00 0.00 38.58 5.69
5829 8138 4.573021 AAGCATATTGGGCCATGTTTTT 57.427 36.364 7.26 0.00 0.00 1.94
5830 8139 4.263418 ACAAAGCATATTGGGCCATGTTTT 60.263 37.500 7.26 10.90 36.42 2.43
5831 8140 3.263937 ACAAAGCATATTGGGCCATGTTT 59.736 39.130 7.26 4.20 34.56 2.83
5832 8141 2.839425 ACAAAGCATATTGGGCCATGTT 59.161 40.909 7.26 0.00 34.56 2.71
5833 8142 2.168936 CACAAAGCATATTGGGCCATGT 59.831 45.455 7.26 2.58 34.56 3.21
5834 8143 2.168936 ACACAAAGCATATTGGGCCATG 59.831 45.455 7.26 3.65 37.20 3.66
5835 8144 2.431782 GACACAAAGCATATTGGGCCAT 59.568 45.455 7.26 0.00 37.20 4.40
5836 8145 1.824230 GACACAAAGCATATTGGGCCA 59.176 47.619 0.00 0.00 37.20 5.36
5837 8146 2.102578 AGACACAAAGCATATTGGGCC 58.897 47.619 0.00 0.00 37.20 5.80
5838 8147 2.493278 ACAGACACAAAGCATATTGGGC 59.507 45.455 0.00 0.00 37.20 5.36
5839 8148 4.789012 AACAGACACAAAGCATATTGGG 57.211 40.909 0.00 0.00 39.65 4.12
5840 8149 5.771469 TCAAACAGACACAAAGCATATTGG 58.229 37.500 0.00 0.00 34.56 3.16
5841 8150 6.441274 ACTCAAACAGACACAAAGCATATTG 58.559 36.000 0.00 0.00 36.37 1.90
5842 8151 6.488006 AGACTCAAACAGACACAAAGCATATT 59.512 34.615 0.00 0.00 0.00 1.28
5843 8152 6.000219 AGACTCAAACAGACACAAAGCATAT 59.000 36.000 0.00 0.00 0.00 1.78
5844 8153 5.368145 AGACTCAAACAGACACAAAGCATA 58.632 37.500 0.00 0.00 0.00 3.14
5845 8154 4.202441 AGACTCAAACAGACACAAAGCAT 58.798 39.130 0.00 0.00 0.00 3.79
5846 8155 3.609853 AGACTCAAACAGACACAAAGCA 58.390 40.909 0.00 0.00 0.00 3.91
5847 8156 5.050490 TCTAGACTCAAACAGACACAAAGC 58.950 41.667 0.00 0.00 0.00 3.51
5848 8157 6.146837 CCATCTAGACTCAAACAGACACAAAG 59.853 42.308 0.00 0.00 0.00 2.77
5849 8158 5.991606 CCATCTAGACTCAAACAGACACAAA 59.008 40.000 0.00 0.00 0.00 2.83
5850 8159 5.304357 TCCATCTAGACTCAAACAGACACAA 59.696 40.000 0.00 0.00 0.00 3.33
5851 8160 4.832823 TCCATCTAGACTCAAACAGACACA 59.167 41.667 0.00 0.00 0.00 3.72
5852 8161 5.164954 GTCCATCTAGACTCAAACAGACAC 58.835 45.833 0.00 0.00 33.79 3.67
5853 8162 4.832823 TGTCCATCTAGACTCAAACAGACA 59.167 41.667 0.00 0.00 37.66 3.41
5854 8163 5.392767 TGTCCATCTAGACTCAAACAGAC 57.607 43.478 0.00 0.00 37.66 3.51
5855 8164 6.419484 TTTGTCCATCTAGACTCAAACAGA 57.581 37.500 0.00 0.00 37.66 3.41
5856 8165 7.496529 TTTTTGTCCATCTAGACTCAAACAG 57.503 36.000 0.00 0.00 37.66 3.16
5881 8190 0.751643 GAAGCATATGGGGCCGTGTT 60.752 55.000 4.56 0.00 0.00 3.32
5887 8196 3.769201 GCAGGAAGCATATGGGGC 58.231 61.111 4.56 0.00 44.79 5.80
5908 8217 4.268687 GTCAGCCAAGACGAGGTG 57.731 61.111 0.00 0.00 0.00 4.00
5914 8223 1.300931 TGACAGCGTCAGCCAAGAC 60.301 57.895 7.20 0.00 46.67 3.01
5916 8225 2.661566 CGTGACAGCGTCAGCCAAG 61.662 63.158 10.88 0.00 43.57 3.61
5917 8226 2.661537 CGTGACAGCGTCAGCCAA 60.662 61.111 10.88 0.00 43.57 4.52
5942 8258 1.153127 TTCTTCGGGCCAACAACGT 60.153 52.632 4.39 0.00 0.00 3.99
5945 8261 1.901464 GCCTTCTTCGGGCCAACAA 60.901 57.895 4.39 0.00 43.49 2.83
5964 8333 4.760047 ATCTCCACCACGGTGCGC 62.760 66.667 10.89 0.00 44.16 6.09
5965 8334 2.815211 CATCTCCACCACGGTGCG 60.815 66.667 10.89 4.70 44.16 5.34
5966 8335 2.436646 CCATCTCCACCACGGTGC 60.437 66.667 10.89 0.00 44.16 5.01
5967 8336 2.436646 GCCATCTCCACCACGGTG 60.437 66.667 9.36 9.36 45.02 4.94
5968 8337 2.607750 AGCCATCTCCACCACGGT 60.608 61.111 0.00 0.00 35.57 4.83
5969 8338 2.124983 CAGCCATCTCCACCACGG 60.125 66.667 0.00 0.00 0.00 4.94
5970 8339 2.821366 GCAGCCATCTCCACCACG 60.821 66.667 0.00 0.00 0.00 4.94
5971 8340 2.439156 GGCAGCCATCTCCACCAC 60.439 66.667 6.55 0.00 0.00 4.16
5972 8341 4.100084 CGGCAGCCATCTCCACCA 62.100 66.667 13.30 0.00 0.00 4.17
5973 8342 4.101448 ACGGCAGCCATCTCCACC 62.101 66.667 13.30 0.00 0.00 4.61
5974 8343 2.599645 ATCACGGCAGCCATCTCCAC 62.600 60.000 13.30 0.00 0.00 4.02
5975 8344 2.369633 ATCACGGCAGCCATCTCCA 61.370 57.895 13.30 0.00 0.00 3.86
5976 8345 1.890979 CATCACGGCAGCCATCTCC 60.891 63.158 13.30 0.00 0.00 3.71
5977 8346 1.890979 CCATCACGGCAGCCATCTC 60.891 63.158 13.30 0.00 0.00 2.75
5978 8347 2.191375 CCATCACGGCAGCCATCT 59.809 61.111 13.30 0.00 0.00 2.90
6105 8474 2.887568 CGATGAGCTCGTGGTGGC 60.888 66.667 14.59 0.00 42.56 5.01
6126 8495 4.660938 AAGCTTGGGTGGACGGGC 62.661 66.667 0.00 0.00 0.00 6.13
6137 8506 0.514691 GTGGCGACTCTGAAAGCTTG 59.485 55.000 0.00 0.00 0.00 4.01
6144 8513 2.125952 CATGCGTGGCGACTCTGA 60.126 61.111 0.00 0.00 0.00 3.27
6151 8520 3.410516 TCGTTGACATGCGTGGCG 61.411 61.111 11.36 9.17 35.52 5.69
6155 8524 2.358247 GGGGTCGTTGACATGCGT 60.358 61.111 0.00 0.00 33.68 5.24
6166 8535 1.964373 CCAAAGGTTGACGGGGTCG 60.964 63.158 0.00 0.00 43.02 4.79
6170 8539 0.952010 CGGTACCAAAGGTTGACGGG 60.952 60.000 13.54 0.00 37.09 5.28
6172 8541 1.142474 GACGGTACCAAAGGTTGACG 58.858 55.000 13.54 0.00 37.09 4.35
6176 8545 0.319405 CCGAGACGGTACCAAAGGTT 59.681 55.000 13.54 0.00 42.73 3.50
6215 8584 0.107993 CTGAGGCGAATGGAGAAGCA 60.108 55.000 0.00 0.00 0.00 3.91
6243 8612 1.137513 CGAAGTCACCCGTTTCAGAC 58.862 55.000 0.00 0.00 0.00 3.51
6245 8614 0.859232 CACGAAGTCACCCGTTTCAG 59.141 55.000 0.00 0.00 41.61 3.02
6276 8645 0.036010 ATCAAAGAGGAGGCACACCG 60.036 55.000 0.00 0.00 46.15 4.94
6278 8647 2.027745 TGAGATCAAAGAGGAGGCACAC 60.028 50.000 0.00 0.00 0.00 3.82
6279 8648 2.259917 TGAGATCAAAGAGGAGGCACA 58.740 47.619 0.00 0.00 0.00 4.57
6286 8655 2.686915 GGTGGCATTGAGATCAAAGAGG 59.313 50.000 0.00 0.00 39.55 3.69
6308 8677 1.885388 TGAACTGACCGGCAACACG 60.885 57.895 0.00 0.00 0.00 4.49
6309 8678 0.814010 AGTGAACTGACCGGCAACAC 60.814 55.000 0.00 10.96 0.00 3.32
6331 8700 1.957668 AGTGACGTTTGGTAACCCAC 58.042 50.000 0.00 0.00 41.67 4.61
6373 8742 7.125811 ACATTTTCCAAGATACCTGTAGAGCTA 59.874 37.037 0.00 0.00 0.00 3.32
6381 8750 6.646240 CCAACAAACATTTTCCAAGATACCTG 59.354 38.462 0.00 0.00 0.00 4.00
6388 8757 4.201901 GCAACCCAACAAACATTTTCCAAG 60.202 41.667 0.00 0.00 0.00 3.61
6390 8759 3.274288 GCAACCCAACAAACATTTTCCA 58.726 40.909 0.00 0.00 0.00 3.53
6396 8765 2.045524 TCCATGCAACCCAACAAACAT 58.954 42.857 0.00 0.00 0.00 2.71
6425 8794 0.716108 CACACGGAGCGACAAATCTC 59.284 55.000 0.00 0.00 0.00 2.75
6426 8795 0.317160 TCACACGGAGCGACAAATCT 59.683 50.000 0.00 0.00 0.00 2.40
6434 8803 0.937699 TTTCTTCGTCACACGGAGCG 60.938 55.000 0.00 0.00 46.46 5.03
6437 8806 4.713824 AGATATTTCTTCGTCACACGGA 57.286 40.909 0.00 0.00 42.81 4.69
6438 8807 5.445939 CCAAAGATATTTCTTCGTCACACGG 60.446 44.000 0.00 0.00 41.42 4.94
6439 8808 5.445939 CCCAAAGATATTTCTTCGTCACACG 60.446 44.000 0.00 0.00 41.42 4.49
6440 8809 5.673818 GCCCAAAGATATTTCTTCGTCACAC 60.674 44.000 0.00 0.00 41.42 3.82
6441 8810 4.394920 GCCCAAAGATATTTCTTCGTCACA 59.605 41.667 0.00 0.00 41.42 3.58
6442 8811 4.201920 GGCCCAAAGATATTTCTTCGTCAC 60.202 45.833 0.00 0.00 41.42 3.67
6443 8812 3.945285 GGCCCAAAGATATTTCTTCGTCA 59.055 43.478 0.00 0.00 41.42 4.35
6444 8813 3.315470 GGGCCCAAAGATATTTCTTCGTC 59.685 47.826 19.95 0.00 41.42 4.20
6445 8814 3.053619 AGGGCCCAAAGATATTTCTTCGT 60.054 43.478 27.56 0.00 41.42 3.85
6446 8815 3.555966 AGGGCCCAAAGATATTTCTTCG 58.444 45.455 27.56 0.00 41.42 3.79
6447 8816 4.797743 AGAGGGCCCAAAGATATTTCTTC 58.202 43.478 27.56 7.73 41.42 2.87
6448 8817 4.687219 CGAGAGGGCCCAAAGATATTTCTT 60.687 45.833 27.56 0.00 44.20 2.52
6449 8818 3.181450 CGAGAGGGCCCAAAGATATTTCT 60.181 47.826 27.56 14.82 0.00 2.52
6450 8819 3.142174 CGAGAGGGCCCAAAGATATTTC 58.858 50.000 27.56 9.41 0.00 2.17
6451 8820 3.214696 CGAGAGGGCCCAAAGATATTT 57.785 47.619 27.56 0.00 0.00 1.40
6452 8821 2.938956 CGAGAGGGCCCAAAGATATT 57.061 50.000 27.56 0.00 0.00 1.28
6466 8835 5.500645 TCATGATGTTGTACTACCGAGAG 57.499 43.478 4.98 0.00 0.00 3.20
6467 8836 5.907866 TTCATGATGTTGTACTACCGAGA 57.092 39.130 4.98 0.00 0.00 4.04
6468 8837 7.096023 GCTATTTCATGATGTTGTACTACCGAG 60.096 40.741 4.98 0.00 0.00 4.63
6469 8838 6.700081 GCTATTTCATGATGTTGTACTACCGA 59.300 38.462 4.98 0.00 0.00 4.69
6470 8839 6.701841 AGCTATTTCATGATGTTGTACTACCG 59.298 38.462 4.98 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.