Multiple sequence alignment - TraesCS5D01G118500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G118500 chr5D 100.000 2001 0 0 616 2616 158803996 158805996 0.000000e+00 3696
1 TraesCS5D01G118500 chr5D 100.000 330 0 0 1 330 158803381 158803710 6.190000e-171 610
2 TraesCS5D01G118500 chr5A 95.305 1704 64 6 644 2344 208746086 208747776 0.000000e+00 2689
3 TraesCS5D01G118500 chr5A 94.465 271 14 1 2346 2616 164075263 164074994 1.450000e-112 416
4 TraesCS5D01G118500 chr5B 96.139 1269 42 5 616 1880 169680446 169679181 0.000000e+00 2065
5 TraesCS5D01G118500 chr5B 90.164 122 11 1 2224 2344 659096164 659096043 9.690000e-35 158
6 TraesCS5D01G118500 chr1B 94.242 330 16 3 1 328 120637771 120637443 3.890000e-138 501
7 TraesCS5D01G118500 chr1B 90.066 151 11 3 184 330 531002528 531002378 2.660000e-45 193
8 TraesCS5D01G118500 chr1B 90.164 122 11 1 2223 2343 622945315 622945194 9.690000e-35 158
9 TraesCS5D01G118500 chr7B 92.749 331 23 1 1 330 24284870 24285200 6.550000e-131 477
10 TraesCS5D01G118500 chr7B 92.989 271 18 1 2346 2616 717808748 717808479 6.790000e-106 394
11 TraesCS5D01G118500 chr7B 92.989 271 18 1 2346 2616 717812671 717812402 6.790000e-106 394
12 TraesCS5D01G118500 chr7B 90.164 122 11 1 2224 2344 362970388 362970267 9.690000e-35 158
13 TraesCS5D01G118500 chr4D 97.417 271 7 0 2346 2616 385713555 385713825 1.830000e-126 462
14 TraesCS5D01G118500 chr4D 85.714 140 20 0 1965 2104 312565390 312565529 5.830000e-32 148
15 TraesCS5D01G118500 chr3B 96.715 274 8 1 2344 2616 598996874 598997147 3.070000e-124 455
16 TraesCS5D01G118500 chr3A 91.515 330 24 2 1 330 595929184 595929509 3.970000e-123 451
17 TraesCS5D01G118500 chr3A 92.581 310 21 2 1 309 205696825 205697133 6.640000e-121 444
18 TraesCS5D01G118500 chr7D 96.310 271 10 0 2346 2616 104747082 104746812 1.850000e-121 446
19 TraesCS5D01G118500 chr7D 88.955 335 31 3 1 330 225825680 225826013 2.420000e-110 409
20 TraesCS5D01G118500 chr1D 95.911 269 11 0 2348 2616 98658975 98659243 1.110000e-118 436
21 TraesCS5D01G118500 chr2A 94.074 270 16 0 2347 2616 148845197 148845466 6.740000e-111 411
22 TraesCS5D01G118500 chr2A 90.909 121 10 1 2224 2343 759326433 759326313 7.490000e-36 161
23 TraesCS5D01G118500 chr2D 93.333 270 17 1 2348 2616 62617359 62617090 5.250000e-107 398
24 TraesCS5D01G118500 chr1A 90.833 120 11 0 2224 2343 429381301 429381182 7.490000e-36 161
25 TraesCS5D01G118500 chr4B 90.164 122 12 0 2223 2344 16053152 16053273 2.690000e-35 159
26 TraesCS5D01G118500 chr4B 87.143 140 18 0 1965 2104 389116339 389116478 2.690000e-35 159
27 TraesCS5D01G118500 chr2B 90.164 122 12 0 2223 2344 638660446 638660325 2.690000e-35 159
28 TraesCS5D01G118500 chrUn 90.164 122 11 1 2224 2344 47644334 47644455 9.690000e-35 158
29 TraesCS5D01G118500 chr4A 85.965 114 15 1 2000 2113 163915327 163915215 1.270000e-23 121


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G118500 chr5D 158803381 158805996 2615 False 2153 3696 100.000 1 2616 2 chr5D.!!$F1 2615
1 TraesCS5D01G118500 chr5A 208746086 208747776 1690 False 2689 2689 95.305 644 2344 1 chr5A.!!$F1 1700
2 TraesCS5D01G118500 chr5B 169679181 169680446 1265 True 2065 2065 96.139 616 1880 1 chr5B.!!$R1 1264
3 TraesCS5D01G118500 chr7B 717808479 717812671 4192 True 394 394 92.989 2346 2616 2 chr7B.!!$R2 270

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
117 118 0.035439 GCCCGGATCTTCCAGAACAA 60.035 55.0 0.73 0.0 35.91 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1764 1767 0.586319 CGTGCGCCCGAATAAATCAT 59.414 50.0 6.36 0.0 0.0 2.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.895232 GGATAGAAGAGTCCACTGCAA 57.105 47.619 0.00 0.00 34.57 4.08
21 22 3.526534 GGATAGAAGAGTCCACTGCAAC 58.473 50.000 0.00 0.00 34.57 4.17
22 23 3.055819 GGATAGAAGAGTCCACTGCAACA 60.056 47.826 0.00 0.00 34.57 3.33
23 24 4.563580 GGATAGAAGAGTCCACTGCAACAA 60.564 45.833 0.00 0.00 34.57 2.83
24 25 3.498774 AGAAGAGTCCACTGCAACAAT 57.501 42.857 0.00 0.00 0.00 2.71
25 26 3.144506 AGAAGAGTCCACTGCAACAATG 58.855 45.455 0.00 0.00 0.00 2.82
35 36 2.176546 CAACAATGCCGACCTGCG 59.823 61.111 0.00 0.00 40.47 5.18
36 37 2.031919 AACAATGCCGACCTGCGA 59.968 55.556 0.00 0.00 44.57 5.10
37 38 1.599518 AACAATGCCGACCTGCGAA 60.600 52.632 0.00 0.00 44.57 4.70
38 39 1.169661 AACAATGCCGACCTGCGAAA 61.170 50.000 0.00 0.00 44.57 3.46
39 40 1.169661 ACAATGCCGACCTGCGAAAA 61.170 50.000 0.00 0.00 44.57 2.29
40 41 0.454957 CAATGCCGACCTGCGAAAAG 60.455 55.000 0.00 0.00 44.57 2.27
41 42 0.605319 AATGCCGACCTGCGAAAAGA 60.605 50.000 0.00 0.00 44.57 2.52
42 43 0.605319 ATGCCGACCTGCGAAAAGAA 60.605 50.000 0.00 0.00 44.57 2.52
43 44 1.227999 TGCCGACCTGCGAAAAGAAG 61.228 55.000 0.00 0.00 44.57 2.85
47 48 4.404691 CCTGCGAAAAGAAGGCCT 57.595 55.556 0.00 0.00 39.27 5.19
48 49 1.878775 CCTGCGAAAAGAAGGCCTG 59.121 57.895 5.69 0.00 39.27 4.85
49 50 1.589716 CCTGCGAAAAGAAGGCCTGG 61.590 60.000 5.69 0.00 39.27 4.45
50 51 0.606401 CTGCGAAAAGAAGGCCTGGA 60.606 55.000 5.69 0.00 0.00 3.86
51 52 0.606401 TGCGAAAAGAAGGCCTGGAG 60.606 55.000 5.69 0.00 0.00 3.86
52 53 0.606673 GCGAAAAGAAGGCCTGGAGT 60.607 55.000 5.69 0.00 0.00 3.85
53 54 1.897560 CGAAAAGAAGGCCTGGAGTT 58.102 50.000 5.69 0.00 0.00 3.01
54 55 1.807142 CGAAAAGAAGGCCTGGAGTTC 59.193 52.381 5.69 7.74 0.00 3.01
55 56 2.810400 CGAAAAGAAGGCCTGGAGTTCA 60.810 50.000 5.69 0.00 0.00 3.18
56 57 2.278332 AAAGAAGGCCTGGAGTTCAC 57.722 50.000 5.69 0.00 0.00 3.18
57 58 1.439543 AAGAAGGCCTGGAGTTCACT 58.560 50.000 5.69 0.00 0.00 3.41
58 59 0.689623 AGAAGGCCTGGAGTTCACTG 59.310 55.000 5.69 0.00 0.00 3.66
59 60 0.687354 GAAGGCCTGGAGTTCACTGA 59.313 55.000 5.69 0.00 0.00 3.41
60 61 1.280421 GAAGGCCTGGAGTTCACTGAT 59.720 52.381 5.69 0.00 0.00 2.90
61 62 1.366319 AGGCCTGGAGTTCACTGATT 58.634 50.000 3.11 0.00 0.00 2.57
62 63 1.280421 AGGCCTGGAGTTCACTGATTC 59.720 52.381 3.11 0.00 0.00 2.52
63 64 1.003580 GGCCTGGAGTTCACTGATTCA 59.996 52.381 0.00 0.00 0.00 2.57
64 65 2.354259 GCCTGGAGTTCACTGATTCAG 58.646 52.381 12.17 12.17 37.52 3.02
65 66 2.289945 GCCTGGAGTTCACTGATTCAGT 60.290 50.000 13.61 13.61 46.51 3.41
66 67 3.808618 GCCTGGAGTTCACTGATTCAGTT 60.809 47.826 16.64 2.44 42.59 3.16
67 68 3.750130 CCTGGAGTTCACTGATTCAGTTG 59.250 47.826 16.64 12.06 42.59 3.16
68 69 3.743521 TGGAGTTCACTGATTCAGTTGG 58.256 45.455 16.64 7.15 42.59 3.77
69 70 3.136443 TGGAGTTCACTGATTCAGTTGGT 59.864 43.478 16.64 2.34 42.59 3.67
70 71 4.346709 TGGAGTTCACTGATTCAGTTGGTA 59.653 41.667 16.64 0.73 42.59 3.25
71 72 5.013079 TGGAGTTCACTGATTCAGTTGGTAT 59.987 40.000 16.64 2.68 42.59 2.73
72 73 5.352569 GGAGTTCACTGATTCAGTTGGTATG 59.647 44.000 16.64 5.11 42.59 2.39
73 74 5.248640 AGTTCACTGATTCAGTTGGTATGG 58.751 41.667 16.64 4.35 42.59 2.74
74 75 4.908601 TCACTGATTCAGTTGGTATGGT 57.091 40.909 16.64 0.00 42.59 3.55
75 76 4.578871 TCACTGATTCAGTTGGTATGGTG 58.421 43.478 16.64 3.85 42.59 4.17
76 77 3.691118 CACTGATTCAGTTGGTATGGTGG 59.309 47.826 16.64 0.00 42.59 4.61
77 78 3.282021 CTGATTCAGTTGGTATGGTGGG 58.718 50.000 5.46 0.00 0.00 4.61
78 79 2.647299 TGATTCAGTTGGTATGGTGGGT 59.353 45.455 0.00 0.00 0.00 4.51
79 80 3.075283 TGATTCAGTTGGTATGGTGGGTT 59.925 43.478 0.00 0.00 0.00 4.11
80 81 4.289934 TGATTCAGTTGGTATGGTGGGTTA 59.710 41.667 0.00 0.00 0.00 2.85
81 82 3.706600 TCAGTTGGTATGGTGGGTTAC 57.293 47.619 0.00 0.00 0.00 2.50
82 83 2.980379 TCAGTTGGTATGGTGGGTTACA 59.020 45.455 0.00 0.00 0.00 2.41
83 84 3.589735 TCAGTTGGTATGGTGGGTTACAT 59.410 43.478 0.00 0.00 0.00 2.29
84 85 3.694072 CAGTTGGTATGGTGGGTTACATG 59.306 47.826 0.00 0.00 0.00 3.21
85 86 3.020984 GTTGGTATGGTGGGTTACATGG 58.979 50.000 0.00 0.00 0.00 3.66
86 87 2.563406 TGGTATGGTGGGTTACATGGA 58.437 47.619 0.00 0.00 0.00 3.41
87 88 2.920271 TGGTATGGTGGGTTACATGGAA 59.080 45.455 0.00 0.00 0.00 3.53
88 89 3.053991 TGGTATGGTGGGTTACATGGAAG 60.054 47.826 0.00 0.00 0.00 3.46
89 90 2.826674 ATGGTGGGTTACATGGAAGG 57.173 50.000 0.00 0.00 0.00 3.46
90 91 1.748732 TGGTGGGTTACATGGAAGGA 58.251 50.000 0.00 0.00 0.00 3.36
91 92 1.633432 TGGTGGGTTACATGGAAGGAG 59.367 52.381 0.00 0.00 0.00 3.69
92 93 1.682087 GGTGGGTTACATGGAAGGAGC 60.682 57.143 0.00 0.00 0.00 4.70
93 94 0.251916 TGGGTTACATGGAAGGAGCG 59.748 55.000 0.00 0.00 0.00 5.03
94 95 1.095807 GGGTTACATGGAAGGAGCGC 61.096 60.000 0.00 0.00 0.00 5.92
95 96 0.392461 GGTTACATGGAAGGAGCGCA 60.392 55.000 11.47 0.00 0.00 6.09
96 97 1.448985 GTTACATGGAAGGAGCGCAA 58.551 50.000 11.47 0.00 0.00 4.85
97 98 2.017049 GTTACATGGAAGGAGCGCAAT 58.983 47.619 11.47 0.00 0.00 3.56
98 99 1.667236 TACATGGAAGGAGCGCAATG 58.333 50.000 11.47 4.12 0.00 2.82
99 100 1.065273 CATGGAAGGAGCGCAATGC 59.935 57.895 11.47 0.00 46.98 3.56
108 109 3.211963 GCGCAATGCCCGGATCTT 61.212 61.111 0.73 0.00 37.76 2.40
109 110 3.025619 CGCAATGCCCGGATCTTC 58.974 61.111 0.73 0.00 0.00 2.87
110 111 2.546494 CGCAATGCCCGGATCTTCC 61.546 63.158 0.73 0.00 0.00 3.46
111 112 1.453745 GCAATGCCCGGATCTTCCA 60.454 57.895 0.73 0.00 35.91 3.53
112 113 1.450531 GCAATGCCCGGATCTTCCAG 61.451 60.000 0.73 0.00 35.91 3.86
113 114 0.181114 CAATGCCCGGATCTTCCAGA 59.819 55.000 0.73 0.00 35.91 3.86
114 115 0.918983 AATGCCCGGATCTTCCAGAA 59.081 50.000 0.73 0.00 35.91 3.02
115 116 0.181350 ATGCCCGGATCTTCCAGAAC 59.819 55.000 0.73 0.00 35.91 3.01
116 117 1.198094 TGCCCGGATCTTCCAGAACA 61.198 55.000 0.73 0.00 35.91 3.18
117 118 0.035439 GCCCGGATCTTCCAGAACAA 60.035 55.000 0.73 0.00 35.91 2.83
118 119 1.739067 CCCGGATCTTCCAGAACAAC 58.261 55.000 0.73 0.00 35.91 3.32
119 120 1.279271 CCCGGATCTTCCAGAACAACT 59.721 52.381 0.73 0.00 35.91 3.16
120 121 2.500098 CCCGGATCTTCCAGAACAACTA 59.500 50.000 0.73 0.00 35.91 2.24
121 122 3.134804 CCCGGATCTTCCAGAACAACTAT 59.865 47.826 0.73 0.00 35.91 2.12
122 123 4.122776 CCGGATCTTCCAGAACAACTATG 58.877 47.826 0.00 0.00 35.91 2.23
123 124 3.557595 CGGATCTTCCAGAACAACTATGC 59.442 47.826 0.00 0.00 35.91 3.14
124 125 3.557595 GGATCTTCCAGAACAACTATGCG 59.442 47.826 0.00 0.00 36.28 4.73
125 126 3.678056 TCTTCCAGAACAACTATGCGT 57.322 42.857 0.00 0.00 0.00 5.24
126 127 3.585862 TCTTCCAGAACAACTATGCGTC 58.414 45.455 0.00 0.00 0.00 5.19
127 128 3.006430 TCTTCCAGAACAACTATGCGTCA 59.994 43.478 0.00 0.00 0.00 4.35
128 129 3.394674 TCCAGAACAACTATGCGTCAA 57.605 42.857 0.00 0.00 0.00 3.18
129 130 3.325870 TCCAGAACAACTATGCGTCAAG 58.674 45.455 0.00 0.00 0.00 3.02
130 131 2.416547 CCAGAACAACTATGCGTCAAGG 59.583 50.000 0.00 0.00 0.00 3.61
131 132 2.416547 CAGAACAACTATGCGTCAAGGG 59.583 50.000 0.00 0.00 0.00 3.95
132 133 2.301870 AGAACAACTATGCGTCAAGGGA 59.698 45.455 0.00 0.00 0.00 4.20
133 134 2.386661 ACAACTATGCGTCAAGGGAG 57.613 50.000 0.00 0.00 0.00 4.30
134 135 1.066143 ACAACTATGCGTCAAGGGAGG 60.066 52.381 0.00 0.00 0.00 4.30
135 136 1.066143 CAACTATGCGTCAAGGGAGGT 60.066 52.381 0.00 0.00 0.00 3.85
136 137 0.537188 ACTATGCGTCAAGGGAGGTG 59.463 55.000 0.00 0.00 0.00 4.00
137 138 0.824109 CTATGCGTCAAGGGAGGTGA 59.176 55.000 0.00 0.00 0.00 4.02
138 139 0.535335 TATGCGTCAAGGGAGGTGAC 59.465 55.000 0.00 0.00 41.66 3.67
141 142 3.468063 GTCAAGGGAGGTGACGGT 58.532 61.111 0.00 0.00 36.35 4.83
142 143 1.292541 GTCAAGGGAGGTGACGGTC 59.707 63.158 0.00 0.00 36.35 4.79
143 144 1.911766 TCAAGGGAGGTGACGGTCC 60.912 63.158 5.55 0.00 0.00 4.46
144 145 2.995574 AAGGGAGGTGACGGTCCG 60.996 66.667 10.48 10.48 33.13 4.79
157 158 4.508128 GTCCGGCGGCTGATCGAA 62.508 66.667 23.83 0.00 0.00 3.71
158 159 4.207281 TCCGGCGGCTGATCGAAG 62.207 66.667 23.83 0.00 0.00 3.79
159 160 4.207281 CCGGCGGCTGATCGAAGA 62.207 66.667 15.42 0.00 45.75 2.87
160 161 2.028190 CGGCGGCTGATCGAAGAT 59.972 61.111 7.61 0.00 45.12 2.40
161 162 2.305853 CGGCGGCTGATCGAAGATG 61.306 63.158 7.61 0.00 45.12 2.90
162 163 2.602322 GGCGGCTGATCGAAGATGC 61.602 63.158 0.00 0.00 45.12 3.91
163 164 2.602322 GCGGCTGATCGAAGATGCC 61.602 63.158 0.00 10.69 45.12 4.40
164 165 3.635204 GGCTGATCGAAGATGCCG 58.365 61.111 6.39 0.00 45.12 5.69
165 166 1.958205 GGCTGATCGAAGATGCCGG 60.958 63.158 0.00 0.00 45.12 6.13
166 167 1.068083 GCTGATCGAAGATGCCGGA 59.932 57.895 5.05 0.00 45.12 5.14
167 168 0.530650 GCTGATCGAAGATGCCGGAA 60.531 55.000 5.05 0.00 45.12 4.30
168 169 1.875576 GCTGATCGAAGATGCCGGAAT 60.876 52.381 5.05 0.00 45.12 3.01
169 170 2.610479 GCTGATCGAAGATGCCGGAATA 60.610 50.000 5.05 0.00 45.12 1.75
170 171 3.854666 CTGATCGAAGATGCCGGAATAT 58.145 45.455 5.05 0.00 45.12 1.28
171 172 3.588955 TGATCGAAGATGCCGGAATATG 58.411 45.455 5.05 0.00 45.12 1.78
172 173 2.455674 TCGAAGATGCCGGAATATGG 57.544 50.000 5.05 0.00 0.00 2.74
173 174 1.967779 TCGAAGATGCCGGAATATGGA 59.032 47.619 5.05 0.00 0.00 3.41
174 175 2.069273 CGAAGATGCCGGAATATGGAC 58.931 52.381 5.05 0.00 0.00 4.02
175 176 2.547855 CGAAGATGCCGGAATATGGACA 60.548 50.000 5.05 0.00 0.00 4.02
176 177 2.847327 AGATGCCGGAATATGGACAG 57.153 50.000 5.05 0.00 0.00 3.51
177 178 2.050144 AGATGCCGGAATATGGACAGT 58.950 47.619 5.05 0.00 0.00 3.55
178 179 2.146342 GATGCCGGAATATGGACAGTG 58.854 52.381 5.05 0.00 0.00 3.66
179 180 0.180171 TGCCGGAATATGGACAGTGG 59.820 55.000 5.05 0.00 0.00 4.00
180 181 1.166531 GCCGGAATATGGACAGTGGC 61.167 60.000 5.05 0.00 0.00 5.01
181 182 0.180171 CCGGAATATGGACAGTGGCA 59.820 55.000 0.00 0.00 0.00 4.92
182 183 1.586422 CGGAATATGGACAGTGGCAG 58.414 55.000 0.00 0.00 0.00 4.85
183 184 1.811558 CGGAATATGGACAGTGGCAGG 60.812 57.143 0.00 0.00 0.00 4.85
184 185 1.312815 GAATATGGACAGTGGCAGGC 58.687 55.000 0.00 0.00 0.00 4.85
185 186 0.625316 AATATGGACAGTGGCAGGCA 59.375 50.000 0.00 0.00 0.00 4.75
186 187 0.182061 ATATGGACAGTGGCAGGCAG 59.818 55.000 0.00 0.00 0.00 4.85
187 188 1.913951 TATGGACAGTGGCAGGCAGG 61.914 60.000 0.00 0.00 0.00 4.85
195 196 2.190578 GGCAGGCAGGCGATTAGT 59.809 61.111 0.00 0.00 33.57 2.24
196 197 1.452108 GGCAGGCAGGCGATTAGTT 60.452 57.895 0.00 0.00 33.57 2.24
197 198 0.179056 GGCAGGCAGGCGATTAGTTA 60.179 55.000 0.00 0.00 33.57 2.24
198 199 1.663695 GCAGGCAGGCGATTAGTTAA 58.336 50.000 0.00 0.00 0.00 2.01
199 200 1.330829 GCAGGCAGGCGATTAGTTAAC 59.669 52.381 0.00 0.00 0.00 2.01
200 201 2.627945 CAGGCAGGCGATTAGTTAACA 58.372 47.619 8.61 0.00 0.00 2.41
201 202 2.351726 CAGGCAGGCGATTAGTTAACAC 59.648 50.000 8.61 0.00 0.00 3.32
202 203 1.669265 GGCAGGCGATTAGTTAACACC 59.331 52.381 8.61 0.00 0.00 4.16
203 204 1.669265 GCAGGCGATTAGTTAACACCC 59.331 52.381 8.61 0.00 0.00 4.61
204 205 2.679930 GCAGGCGATTAGTTAACACCCT 60.680 50.000 8.61 1.17 0.00 4.34
205 206 3.606687 CAGGCGATTAGTTAACACCCTT 58.393 45.455 8.61 0.00 0.00 3.95
206 207 4.761975 CAGGCGATTAGTTAACACCCTTA 58.238 43.478 8.61 0.00 0.00 2.69
207 208 5.365619 CAGGCGATTAGTTAACACCCTTAT 58.634 41.667 8.61 0.00 0.00 1.73
208 209 5.820947 CAGGCGATTAGTTAACACCCTTATT 59.179 40.000 8.61 0.00 0.00 1.40
209 210 6.317893 CAGGCGATTAGTTAACACCCTTATTT 59.682 38.462 8.61 0.00 0.00 1.40
210 211 7.496591 CAGGCGATTAGTTAACACCCTTATTTA 59.503 37.037 8.61 0.00 0.00 1.40
211 212 8.215736 AGGCGATTAGTTAACACCCTTATTTAT 58.784 33.333 8.61 0.00 0.00 1.40
212 213 9.492973 GGCGATTAGTTAACACCCTTATTTATA 57.507 33.333 8.61 0.00 0.00 0.98
218 219 7.503549 AGTTAACACCCTTATTTATAGACCCG 58.496 38.462 8.61 0.00 0.00 5.28
219 220 4.968971 ACACCCTTATTTATAGACCCGG 57.031 45.455 0.00 0.00 0.00 5.73
220 221 3.649502 ACACCCTTATTTATAGACCCGGG 59.350 47.826 22.25 22.25 36.52 5.73
221 222 3.008704 CACCCTTATTTATAGACCCGGGG 59.991 52.174 27.92 12.73 34.75 5.73
222 223 3.254089 CCCTTATTTATAGACCCGGGGT 58.746 50.000 27.92 21.21 39.44 4.95
223 224 4.140471 ACCCTTATTTATAGACCCGGGGTA 60.140 45.833 27.92 16.69 42.13 3.69
224 225 5.034878 CCCTTATTTATAGACCCGGGGTAT 58.965 45.833 27.92 19.83 35.25 2.73
225 226 5.129980 CCCTTATTTATAGACCCGGGGTATC 59.870 48.000 27.92 14.06 35.25 2.24
226 227 5.722923 CCTTATTTATAGACCCGGGGTATCA 59.277 44.000 27.92 10.10 35.25 2.15
227 228 6.127140 CCTTATTTATAGACCCGGGGTATCAG 60.127 46.154 27.92 8.52 35.25 2.90
228 229 4.474303 TTTATAGACCCGGGGTATCAGA 57.526 45.455 27.92 0.52 35.25 3.27
229 230 2.305858 ATAGACCCGGGGTATCAGAC 57.694 55.000 27.92 5.34 35.25 3.51
230 231 1.229131 TAGACCCGGGGTATCAGACT 58.771 55.000 27.92 13.30 35.25 3.24
231 232 1.229131 AGACCCGGGGTATCAGACTA 58.771 55.000 27.92 0.00 35.25 2.59
232 233 1.572415 AGACCCGGGGTATCAGACTAA 59.428 52.381 27.92 0.00 35.25 2.24
233 234 2.023695 AGACCCGGGGTATCAGACTAAA 60.024 50.000 27.92 0.00 35.25 1.85
234 235 2.767960 GACCCGGGGTATCAGACTAAAA 59.232 50.000 27.92 0.00 35.25 1.52
235 236 2.502947 ACCCGGGGTATCAGACTAAAAC 59.497 50.000 27.92 0.00 32.11 2.43
236 237 2.482490 CCCGGGGTATCAGACTAAAACG 60.482 54.545 14.71 0.00 0.00 3.60
237 238 2.199236 CGGGGTATCAGACTAAAACGC 58.801 52.381 0.00 0.00 0.00 4.84
238 239 2.558378 GGGGTATCAGACTAAAACGCC 58.442 52.381 0.00 0.00 36.23 5.68
239 240 2.558378 GGGTATCAGACTAAAACGCCC 58.442 52.381 0.00 0.00 0.00 6.13
240 241 2.169978 GGGTATCAGACTAAAACGCCCT 59.830 50.000 0.00 0.00 0.00 5.19
241 242 3.385755 GGGTATCAGACTAAAACGCCCTA 59.614 47.826 0.00 0.00 0.00 3.53
242 243 4.141869 GGGTATCAGACTAAAACGCCCTAA 60.142 45.833 0.00 0.00 0.00 2.69
243 244 4.807834 GGTATCAGACTAAAACGCCCTAAC 59.192 45.833 0.00 0.00 0.00 2.34
244 245 4.546829 ATCAGACTAAAACGCCCTAACA 57.453 40.909 0.00 0.00 0.00 2.41
245 246 4.339872 TCAGACTAAAACGCCCTAACAA 57.660 40.909 0.00 0.00 0.00 2.83
246 247 4.312443 TCAGACTAAAACGCCCTAACAAG 58.688 43.478 0.00 0.00 0.00 3.16
247 248 3.435671 CAGACTAAAACGCCCTAACAAGG 59.564 47.826 0.00 0.00 0.00 3.61
255 256 3.191182 CCCTAACAAGGCATGGGTC 57.809 57.895 0.00 0.00 33.49 4.46
256 257 0.625849 CCCTAACAAGGCATGGGTCT 59.374 55.000 0.00 0.00 33.49 3.85
257 258 1.683011 CCCTAACAAGGCATGGGTCTG 60.683 57.143 0.00 0.00 33.49 3.51
258 259 1.683011 CCTAACAAGGCATGGGTCTGG 60.683 57.143 0.00 0.00 0.00 3.86
259 260 1.004745 CTAACAAGGCATGGGTCTGGT 59.995 52.381 0.00 0.00 33.10 4.00
260 261 0.540365 AACAAGGCATGGGTCTGGTG 60.540 55.000 0.00 0.00 31.75 4.17
261 262 1.075482 CAAGGCATGGGTCTGGTGT 59.925 57.895 0.00 0.00 0.00 4.16
262 263 0.962356 CAAGGCATGGGTCTGGTGTC 60.962 60.000 0.00 0.00 0.00 3.67
263 264 1.136329 AAGGCATGGGTCTGGTGTCT 61.136 55.000 0.00 0.00 0.00 3.41
264 265 1.078143 GGCATGGGTCTGGTGTCTC 60.078 63.158 0.00 0.00 0.00 3.36
265 266 1.448540 GCATGGGTCTGGTGTCTCG 60.449 63.158 0.00 0.00 0.00 4.04
266 267 1.219124 CATGGGTCTGGTGTCTCGG 59.781 63.158 0.00 0.00 0.00 4.63
267 268 1.229209 ATGGGTCTGGTGTCTCGGT 60.229 57.895 0.00 0.00 0.00 4.69
268 269 1.258445 ATGGGTCTGGTGTCTCGGTC 61.258 60.000 0.00 0.00 0.00 4.79
269 270 1.906824 GGGTCTGGTGTCTCGGTCA 60.907 63.158 0.00 0.00 0.00 4.02
270 271 1.289380 GGTCTGGTGTCTCGGTCAC 59.711 63.158 0.00 0.00 35.36 3.67
274 275 2.603776 GGTGTCTCGGTCACCCCT 60.604 66.667 11.53 0.00 46.63 4.79
275 276 2.657237 GTGTCTCGGTCACCCCTG 59.343 66.667 0.00 0.00 0.00 4.45
276 277 2.603473 TGTCTCGGTCACCCCTGG 60.603 66.667 0.00 0.00 0.00 4.45
277 278 2.603776 GTCTCGGTCACCCCTGGT 60.604 66.667 0.00 0.00 35.62 4.00
288 289 4.039092 CCCTGGTGGCCCTGTGAG 62.039 72.222 0.00 0.00 0.00 3.51
289 290 3.252284 CCTGGTGGCCCTGTGAGT 61.252 66.667 0.00 0.00 0.00 3.41
290 291 2.833913 CCTGGTGGCCCTGTGAGTT 61.834 63.158 0.00 0.00 0.00 3.01
291 292 1.302832 CTGGTGGCCCTGTGAGTTC 60.303 63.158 0.00 0.00 0.00 3.01
292 293 1.770110 TGGTGGCCCTGTGAGTTCT 60.770 57.895 0.00 0.00 0.00 3.01
293 294 0.472925 TGGTGGCCCTGTGAGTTCTA 60.473 55.000 0.00 0.00 0.00 2.10
294 295 0.690762 GGTGGCCCTGTGAGTTCTAA 59.309 55.000 0.00 0.00 0.00 2.10
295 296 1.073284 GGTGGCCCTGTGAGTTCTAAA 59.927 52.381 0.00 0.00 0.00 1.85
296 297 2.488347 GGTGGCCCTGTGAGTTCTAAAA 60.488 50.000 0.00 0.00 0.00 1.52
297 298 3.421844 GTGGCCCTGTGAGTTCTAAAAT 58.578 45.455 0.00 0.00 0.00 1.82
298 299 3.826729 GTGGCCCTGTGAGTTCTAAAATT 59.173 43.478 0.00 0.00 0.00 1.82
299 300 3.826157 TGGCCCTGTGAGTTCTAAAATTG 59.174 43.478 0.00 0.00 0.00 2.32
300 301 4.079253 GGCCCTGTGAGTTCTAAAATTGA 58.921 43.478 0.00 0.00 0.00 2.57
301 302 4.522789 GGCCCTGTGAGTTCTAAAATTGAA 59.477 41.667 0.00 0.00 0.00 2.69
302 303 5.010617 GGCCCTGTGAGTTCTAAAATTGAAA 59.989 40.000 0.00 0.00 0.00 2.69
303 304 6.152379 GCCCTGTGAGTTCTAAAATTGAAAG 58.848 40.000 0.00 0.00 0.00 2.62
304 305 6.152379 CCCTGTGAGTTCTAAAATTGAAAGC 58.848 40.000 0.00 0.00 0.00 3.51
305 306 6.015940 CCCTGTGAGTTCTAAAATTGAAAGCT 60.016 38.462 0.00 0.00 0.00 3.74
306 307 7.428826 CCTGTGAGTTCTAAAATTGAAAGCTT 58.571 34.615 0.00 0.00 0.00 3.74
307 308 8.567948 CCTGTGAGTTCTAAAATTGAAAGCTTA 58.432 33.333 0.00 0.00 0.00 3.09
308 309 9.950680 CTGTGAGTTCTAAAATTGAAAGCTTAA 57.049 29.630 0.00 0.00 0.00 1.85
309 310 9.730420 TGTGAGTTCTAAAATTGAAAGCTTAAC 57.270 29.630 0.00 0.00 0.00 2.01
310 311 9.952188 GTGAGTTCTAAAATTGAAAGCTTAACT 57.048 29.630 0.00 1.10 0.00 2.24
668 669 2.565834 TGGTCTACAGTTCAGGGCTTAC 59.434 50.000 0.00 0.00 0.00 2.34
818 819 3.444805 GAGCCTCTCGCCAGTCGT 61.445 66.667 0.00 0.00 38.78 4.34
891 892 3.389329 GCAGACAAATCCTATCCTCCTCA 59.611 47.826 0.00 0.00 0.00 3.86
1142 1143 0.683828 TCGCCGTCCCCATACAAGTA 60.684 55.000 0.00 0.00 0.00 2.24
1375 1376 4.329545 GTGGAGTTCTGGGCGCCA 62.330 66.667 30.85 13.75 33.51 5.69
1438 1439 2.038837 GGCAAAGGACTACGTGGGC 61.039 63.158 3.26 0.00 0.00 5.36
1658 1659 2.094757 AATCGAGGACGCACACACCA 62.095 55.000 0.00 0.00 39.58 4.17
1741 1744 4.261909 CCGGTCAGTTGACTTGTACTACTT 60.262 45.833 11.67 0.00 44.20 2.24
1779 1784 6.826893 AATCAAAAATGATTTATTCGGGCG 57.173 33.333 0.00 0.00 35.18 6.13
1780 1785 4.109050 TCAAAAATGATTTATTCGGGCGC 58.891 39.130 0.00 0.00 0.00 6.53
1790 1795 2.495366 ATTCGGGCGCACGTCAGTAA 62.495 55.000 33.41 19.24 34.94 2.24
1848 1853 7.687941 TTCTGTAGCAAAGGAAAAAGGATAG 57.312 36.000 0.00 0.00 0.00 2.08
1972 1979 3.701205 AAAAGAAATGTCCCAATGCCC 57.299 42.857 0.00 0.00 0.00 5.36
1980 1987 2.111878 CCCAATGCCCGCTCTAGG 59.888 66.667 0.00 0.00 0.00 3.02
2028 2035 8.880991 TTACTATCTATCCACTAGCTAAAGGG 57.119 38.462 10.37 5.24 0.00 3.95
2103 2110 6.122277 TGAGGTAATATTTCCAGGCTTGAAG 58.878 40.000 13.04 0.00 0.00 3.02
2164 2171 1.963515 GTCCAAACATTCCAGCAACCT 59.036 47.619 0.00 0.00 0.00 3.50
2169 2176 4.021192 CCAAACATTCCAGCAACCTAACAT 60.021 41.667 0.00 0.00 0.00 2.71
2172 2179 4.603131 ACATTCCAGCAACCTAACATCAT 58.397 39.130 0.00 0.00 0.00 2.45
2175 2182 6.095440 ACATTCCAGCAACCTAACATCATAAC 59.905 38.462 0.00 0.00 0.00 1.89
2178 2185 6.245408 TCCAGCAACCTAACATCATAACTTT 58.755 36.000 0.00 0.00 0.00 2.66
2180 2187 6.404734 CCAGCAACCTAACATCATAACTTTCC 60.405 42.308 0.00 0.00 0.00 3.13
2181 2188 5.354234 AGCAACCTAACATCATAACTTTCCG 59.646 40.000 0.00 0.00 0.00 4.30
2199 2206 1.469767 CCGCATAGAAGCTTTTTGGCC 60.470 52.381 0.00 0.00 0.00 5.36
2206 2213 0.249447 AAGCTTTTTGGCCGTTGCTC 60.249 50.000 0.00 0.00 37.74 4.26
2220 2227 0.957395 TTGCTCAGCTGCAAGTAGGC 60.957 55.000 9.47 5.03 46.43 3.93
2236 2243 7.094549 TGCAAGTAGGCGTTTGTTAGAATAAAT 60.095 33.333 0.00 0.00 36.28 1.40
2252 2259 5.475909 AGAATAAATCCGAGGCGTATAGTCA 59.524 40.000 0.00 0.00 0.00 3.41
2259 2266 3.502920 CGAGGCGTATAGTCAATCATCC 58.497 50.000 0.00 0.00 0.00 3.51
2262 2269 3.572682 AGGCGTATAGTCAATCATCCGAA 59.427 43.478 0.00 0.00 0.00 4.30
2264 2271 4.321008 GGCGTATAGTCAATCATCCGAAGA 60.321 45.833 0.00 0.00 0.00 2.87
2273 2280 5.009631 TCAATCATCCGAAGACCAAACAAT 58.990 37.500 0.00 0.00 0.00 2.71
2280 2287 6.494893 TCCGAAGACCAAACAATCATAAAG 57.505 37.500 0.00 0.00 0.00 1.85
2316 2323 3.389925 TTGTTAACGAGGTTCACCGAT 57.610 42.857 0.26 0.00 42.08 4.18
2324 2331 4.142790 ACGAGGTTCACCGATATGACTAT 58.857 43.478 0.00 0.00 42.08 2.12
2326 2333 5.944599 ACGAGGTTCACCGATATGACTATAT 59.055 40.000 0.00 0.00 42.08 0.86
2338 2345 1.229529 ACTATATCCCCGGGGCCTG 60.230 63.158 36.68 22.96 34.68 4.85
2344 2351 2.638025 ATCCCCGGGGCCTGACTATT 62.638 60.000 36.68 7.27 34.68 1.73
2397 6327 9.831737 GCGTATTATTGCATTGATAGAAGAAAT 57.168 29.630 0.00 0.00 0.00 2.17
2440 6370 0.581529 AACACATGACACGAACGCAG 59.418 50.000 0.00 0.00 0.00 5.18
2446 6376 1.299926 GACACGAACGCAGACAGGT 60.300 57.895 0.00 0.00 0.00 4.00
2456 6386 0.877071 GCAGACAGGTGTGAACATGG 59.123 55.000 0.18 0.00 0.00 3.66
2457 6387 1.815408 GCAGACAGGTGTGAACATGGT 60.815 52.381 0.18 0.00 0.00 3.55
2458 6388 1.875514 CAGACAGGTGTGAACATGGTG 59.124 52.381 0.00 0.00 0.00 4.17
2459 6389 1.490490 AGACAGGTGTGAACATGGTGT 59.510 47.619 0.00 0.00 0.00 4.16
2463 6393 0.534203 GGTGTGAACATGGTGTCCGT 60.534 55.000 0.00 0.00 0.00 4.69
2483 6413 4.201763 CCGTAGCAGAAAGAAAAGAGATGC 60.202 45.833 0.00 0.00 0.00 3.91
2488 6418 4.435386 GCAGAAAGAAAAGAGATGCTCGAC 60.435 45.833 0.00 0.00 35.36 4.20
2497 6427 0.394488 AGATGCTCGACCCGAAGAGA 60.394 55.000 0.00 0.00 36.65 3.10
2508 6438 3.829601 GACCCGAAGAGAGGATACATCAT 59.170 47.826 0.00 0.00 41.41 2.45
2518 6448 7.245292 AGAGAGGATACATCATAGCTAAACCT 58.755 38.462 0.00 0.00 41.41 3.50
2572 6502 4.511527 ACCAACTAGAGCATCAACATCTG 58.488 43.478 0.00 0.00 37.82 2.90
2573 6503 3.875727 CCAACTAGAGCATCAACATCTGG 59.124 47.826 0.00 0.00 37.82 3.86
2611 6541 2.402388 CGCGAGCAAGCAAGATGG 59.598 61.111 0.00 0.00 36.85 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.055819 TGTTGCAGTGGACTCTTCTATCC 60.056 47.826 0.00 0.00 35.37 2.59
1 2 4.193826 TGTTGCAGTGGACTCTTCTATC 57.806 45.455 0.00 0.00 0.00 2.08
2 3 4.623932 TTGTTGCAGTGGACTCTTCTAT 57.376 40.909 0.00 0.00 0.00 1.98
3 4 4.318332 CATTGTTGCAGTGGACTCTTCTA 58.682 43.478 0.00 0.00 0.00 2.10
4 5 3.144506 CATTGTTGCAGTGGACTCTTCT 58.855 45.455 0.00 0.00 0.00 2.85
5 6 3.549299 CATTGTTGCAGTGGACTCTTC 57.451 47.619 0.00 0.00 0.00 2.87
18 19 1.851021 TTCGCAGGTCGGCATTGTTG 61.851 55.000 0.00 0.00 39.05 3.33
19 20 1.169661 TTTCGCAGGTCGGCATTGTT 61.170 50.000 0.00 0.00 39.05 2.83
20 21 1.169661 TTTTCGCAGGTCGGCATTGT 61.170 50.000 0.00 0.00 39.05 2.71
21 22 0.454957 CTTTTCGCAGGTCGGCATTG 60.455 55.000 0.00 0.00 39.05 2.82
22 23 0.605319 TCTTTTCGCAGGTCGGCATT 60.605 50.000 0.00 0.00 39.05 3.56
23 24 0.605319 TTCTTTTCGCAGGTCGGCAT 60.605 50.000 0.00 0.00 39.05 4.40
24 25 1.227704 TTCTTTTCGCAGGTCGGCA 60.228 52.632 0.00 0.00 39.05 5.69
25 26 1.497722 CTTCTTTTCGCAGGTCGGC 59.502 57.895 0.00 0.00 39.05 5.54
26 27 1.912371 GCCTTCTTTTCGCAGGTCGG 61.912 60.000 0.00 0.00 39.05 4.79
27 28 1.497722 GCCTTCTTTTCGCAGGTCG 59.502 57.895 0.00 0.00 40.15 4.79
28 29 0.606673 AGGCCTTCTTTTCGCAGGTC 60.607 55.000 0.00 0.00 29.98 3.85
29 30 0.890996 CAGGCCTTCTTTTCGCAGGT 60.891 55.000 0.00 0.00 0.00 4.00
30 31 1.589716 CCAGGCCTTCTTTTCGCAGG 61.590 60.000 0.00 0.00 0.00 4.85
31 32 0.606401 TCCAGGCCTTCTTTTCGCAG 60.606 55.000 0.00 0.00 0.00 5.18
32 33 0.606401 CTCCAGGCCTTCTTTTCGCA 60.606 55.000 0.00 0.00 0.00 5.10
33 34 0.606673 ACTCCAGGCCTTCTTTTCGC 60.607 55.000 0.00 0.00 0.00 4.70
34 35 1.807142 GAACTCCAGGCCTTCTTTTCG 59.193 52.381 0.00 0.00 0.00 3.46
35 36 2.554462 GTGAACTCCAGGCCTTCTTTTC 59.446 50.000 0.00 4.66 0.00 2.29
36 37 2.175715 AGTGAACTCCAGGCCTTCTTTT 59.824 45.455 0.00 0.00 0.00 2.27
37 38 1.777272 AGTGAACTCCAGGCCTTCTTT 59.223 47.619 0.00 0.00 0.00 2.52
38 39 1.072965 CAGTGAACTCCAGGCCTTCTT 59.927 52.381 0.00 0.00 0.00 2.52
39 40 0.689623 CAGTGAACTCCAGGCCTTCT 59.310 55.000 0.00 0.00 0.00 2.85
40 41 0.687354 TCAGTGAACTCCAGGCCTTC 59.313 55.000 0.00 0.00 0.00 3.46
41 42 1.366319 ATCAGTGAACTCCAGGCCTT 58.634 50.000 0.00 0.00 0.00 4.35
42 43 1.280421 GAATCAGTGAACTCCAGGCCT 59.720 52.381 0.00 0.00 0.00 5.19
43 44 1.003580 TGAATCAGTGAACTCCAGGCC 59.996 52.381 0.00 0.00 0.00 5.19
44 45 2.289945 ACTGAATCAGTGAACTCCAGGC 60.290 50.000 15.96 0.00 43.63 4.85
45 46 3.692257 ACTGAATCAGTGAACTCCAGG 57.308 47.619 15.96 0.00 43.63 4.45
46 47 3.750130 CCAACTGAATCAGTGAACTCCAG 59.250 47.826 17.46 5.04 44.62 3.86
47 48 3.136443 ACCAACTGAATCAGTGAACTCCA 59.864 43.478 17.46 0.00 44.62 3.86
48 49 3.744660 ACCAACTGAATCAGTGAACTCC 58.255 45.455 17.46 0.00 44.62 3.85
49 50 5.352569 CCATACCAACTGAATCAGTGAACTC 59.647 44.000 17.46 0.00 44.62 3.01
50 51 5.221925 ACCATACCAACTGAATCAGTGAACT 60.222 40.000 17.46 0.00 44.62 3.01
51 52 5.003804 ACCATACCAACTGAATCAGTGAAC 58.996 41.667 17.46 0.00 44.62 3.18
52 53 5.003160 CACCATACCAACTGAATCAGTGAA 58.997 41.667 17.46 3.37 44.62 3.18
53 54 4.565444 CCACCATACCAACTGAATCAGTGA 60.565 45.833 17.46 3.49 44.62 3.41
54 55 3.691118 CCACCATACCAACTGAATCAGTG 59.309 47.826 17.46 7.90 44.62 3.66
56 57 3.282021 CCCACCATACCAACTGAATCAG 58.718 50.000 8.98 8.98 37.52 2.90
57 58 2.647299 ACCCACCATACCAACTGAATCA 59.353 45.455 0.00 0.00 0.00 2.57
58 59 3.366052 ACCCACCATACCAACTGAATC 57.634 47.619 0.00 0.00 0.00 2.52
59 60 3.825908 AACCCACCATACCAACTGAAT 57.174 42.857 0.00 0.00 0.00 2.57
60 61 3.394940 TGTAACCCACCATACCAACTGAA 59.605 43.478 0.00 0.00 0.00 3.02
61 62 2.980379 TGTAACCCACCATACCAACTGA 59.020 45.455 0.00 0.00 0.00 3.41
62 63 3.426787 TGTAACCCACCATACCAACTG 57.573 47.619 0.00 0.00 0.00 3.16
63 64 3.308832 CCATGTAACCCACCATACCAACT 60.309 47.826 0.00 0.00 0.00 3.16
64 65 3.020984 CCATGTAACCCACCATACCAAC 58.979 50.000 0.00 0.00 0.00 3.77
65 66 2.920271 TCCATGTAACCCACCATACCAA 59.080 45.455 0.00 0.00 0.00 3.67
66 67 2.563406 TCCATGTAACCCACCATACCA 58.437 47.619 0.00 0.00 0.00 3.25
67 68 3.551846 CTTCCATGTAACCCACCATACC 58.448 50.000 0.00 0.00 0.00 2.73
68 69 3.201266 TCCTTCCATGTAACCCACCATAC 59.799 47.826 0.00 0.00 0.00 2.39
69 70 3.458118 CTCCTTCCATGTAACCCACCATA 59.542 47.826 0.00 0.00 0.00 2.74
70 71 2.242196 CTCCTTCCATGTAACCCACCAT 59.758 50.000 0.00 0.00 0.00 3.55
71 72 1.633432 CTCCTTCCATGTAACCCACCA 59.367 52.381 0.00 0.00 0.00 4.17
72 73 1.682087 GCTCCTTCCATGTAACCCACC 60.682 57.143 0.00 0.00 0.00 4.61
73 74 1.751437 GCTCCTTCCATGTAACCCAC 58.249 55.000 0.00 0.00 0.00 4.61
74 75 0.251916 CGCTCCTTCCATGTAACCCA 59.748 55.000 0.00 0.00 0.00 4.51
75 76 1.095807 GCGCTCCTTCCATGTAACCC 61.096 60.000 0.00 0.00 0.00 4.11
76 77 0.392461 TGCGCTCCTTCCATGTAACC 60.392 55.000 9.73 0.00 0.00 2.85
77 78 1.448985 TTGCGCTCCTTCCATGTAAC 58.551 50.000 9.73 0.00 0.00 2.50
78 79 2.016318 CATTGCGCTCCTTCCATGTAA 58.984 47.619 9.73 0.00 0.00 2.41
79 80 1.667236 CATTGCGCTCCTTCCATGTA 58.333 50.000 9.73 0.00 0.00 2.29
80 81 1.660560 GCATTGCGCTCCTTCCATGT 61.661 55.000 9.73 0.00 37.77 3.21
81 82 1.065273 GCATTGCGCTCCTTCCATG 59.935 57.895 9.73 0.80 37.77 3.66
82 83 2.123428 GGCATTGCGCTCCTTCCAT 61.123 57.895 9.73 0.00 41.91 3.41
83 84 2.751436 GGCATTGCGCTCCTTCCA 60.751 61.111 9.73 0.00 41.91 3.53
84 85 3.521796 GGGCATTGCGCTCCTTCC 61.522 66.667 17.59 3.23 41.91 3.46
85 86 3.880846 CGGGCATTGCGCTCCTTC 61.881 66.667 21.47 0.00 38.16 3.46
89 90 3.654020 GATCCGGGCATTGCGCTC 61.654 66.667 21.47 10.26 41.91 5.03
90 91 3.704231 AAGATCCGGGCATTGCGCT 62.704 57.895 21.47 4.99 41.91 5.92
91 92 3.186390 GAAGATCCGGGCATTGCGC 62.186 63.158 15.19 15.19 41.28 6.09
92 93 2.546494 GGAAGATCCGGGCATTGCG 61.546 63.158 0.00 0.00 0.00 4.85
93 94 1.450531 CTGGAAGATCCGGGCATTGC 61.451 60.000 0.00 0.00 40.17 3.56
94 95 0.181114 TCTGGAAGATCCGGGCATTG 59.819 55.000 0.00 0.00 43.23 2.82
95 96 0.918983 TTCTGGAAGATCCGGGCATT 59.081 50.000 0.00 0.00 46.36 3.56
96 97 0.181350 GTTCTGGAAGATCCGGGCAT 59.819 55.000 0.00 0.00 46.36 4.40
97 98 1.198094 TGTTCTGGAAGATCCGGGCA 61.198 55.000 0.00 3.04 46.36 5.36
98 99 0.035439 TTGTTCTGGAAGATCCGGGC 60.035 55.000 0.00 0.00 46.36 6.13
99 100 1.279271 AGTTGTTCTGGAAGATCCGGG 59.721 52.381 0.00 0.00 46.36 5.73
100 101 2.770164 AGTTGTTCTGGAAGATCCGG 57.230 50.000 0.00 0.00 46.36 5.14
101 102 3.557595 GCATAGTTGTTCTGGAAGATCCG 59.442 47.826 0.00 0.00 46.36 4.18
102 103 3.557595 CGCATAGTTGTTCTGGAAGATCC 59.442 47.826 0.00 0.00 46.36 3.36
103 104 4.184629 ACGCATAGTTGTTCTGGAAGATC 58.815 43.478 0.00 0.00 46.36 2.75
104 105 4.184629 GACGCATAGTTGTTCTGGAAGAT 58.815 43.478 0.00 0.00 46.36 2.40
105 106 3.006430 TGACGCATAGTTGTTCTGGAAGA 59.994 43.478 0.00 0.00 44.68 2.87
106 107 3.325870 TGACGCATAGTTGTTCTGGAAG 58.674 45.455 0.00 0.00 0.00 3.46
107 108 3.394674 TGACGCATAGTTGTTCTGGAA 57.605 42.857 0.00 0.00 0.00 3.53
108 109 3.325870 CTTGACGCATAGTTGTTCTGGA 58.674 45.455 0.00 0.00 0.00 3.86
109 110 2.416547 CCTTGACGCATAGTTGTTCTGG 59.583 50.000 0.00 0.00 0.00 3.86
110 111 2.416547 CCCTTGACGCATAGTTGTTCTG 59.583 50.000 0.00 0.00 0.00 3.02
111 112 2.301870 TCCCTTGACGCATAGTTGTTCT 59.698 45.455 0.00 0.00 0.00 3.01
112 113 2.673368 CTCCCTTGACGCATAGTTGTTC 59.327 50.000 0.00 0.00 0.00 3.18
113 114 2.615493 CCTCCCTTGACGCATAGTTGTT 60.615 50.000 0.00 0.00 0.00 2.83
114 115 1.066143 CCTCCCTTGACGCATAGTTGT 60.066 52.381 0.00 0.00 0.00 3.32
115 116 1.066143 ACCTCCCTTGACGCATAGTTG 60.066 52.381 0.00 0.00 0.00 3.16
116 117 1.066143 CACCTCCCTTGACGCATAGTT 60.066 52.381 0.00 0.00 0.00 2.24
117 118 0.537188 CACCTCCCTTGACGCATAGT 59.463 55.000 0.00 0.00 0.00 2.12
118 119 0.824109 TCACCTCCCTTGACGCATAG 59.176 55.000 0.00 0.00 0.00 2.23
119 120 0.535335 GTCACCTCCCTTGACGCATA 59.465 55.000 0.00 0.00 34.41 3.14
120 121 1.296715 GTCACCTCCCTTGACGCAT 59.703 57.895 0.00 0.00 34.41 4.73
121 122 2.741092 GTCACCTCCCTTGACGCA 59.259 61.111 0.00 0.00 34.41 5.24
124 125 1.292541 GACCGTCACCTCCCTTGAC 59.707 63.158 0.00 0.00 40.10 3.18
125 126 1.911766 GGACCGTCACCTCCCTTGA 60.912 63.158 0.00 0.00 0.00 3.02
126 127 2.663196 GGACCGTCACCTCCCTTG 59.337 66.667 0.00 0.00 0.00 3.61
127 128 2.995574 CGGACCGTCACCTCCCTT 60.996 66.667 5.48 0.00 0.00 3.95
140 141 4.508128 TTCGATCAGCCGCCGGAC 62.508 66.667 7.68 0.00 0.00 4.79
141 142 4.207281 CTTCGATCAGCCGCCGGA 62.207 66.667 7.68 0.00 0.00 5.14
142 143 3.506059 ATCTTCGATCAGCCGCCGG 62.506 63.158 0.00 0.00 0.00 6.13
143 144 2.028190 ATCTTCGATCAGCCGCCG 59.972 61.111 0.00 0.00 0.00 6.46
144 145 2.602322 GCATCTTCGATCAGCCGCC 61.602 63.158 0.00 0.00 0.00 6.13
145 146 2.602322 GGCATCTTCGATCAGCCGC 61.602 63.158 3.44 0.00 35.42 6.53
146 147 3.635204 GGCATCTTCGATCAGCCG 58.365 61.111 3.44 0.00 35.42 5.52
147 148 1.958205 CCGGCATCTTCGATCAGCC 60.958 63.158 8.20 8.20 41.86 4.85
148 149 0.530650 TTCCGGCATCTTCGATCAGC 60.531 55.000 0.00 0.00 0.00 4.26
149 150 2.160822 ATTCCGGCATCTTCGATCAG 57.839 50.000 0.00 0.00 0.00 2.90
150 151 3.588955 CATATTCCGGCATCTTCGATCA 58.411 45.455 0.00 0.00 0.00 2.92
151 152 2.932614 CCATATTCCGGCATCTTCGATC 59.067 50.000 0.00 0.00 0.00 3.69
152 153 2.567169 TCCATATTCCGGCATCTTCGAT 59.433 45.455 0.00 0.00 0.00 3.59
153 154 1.967779 TCCATATTCCGGCATCTTCGA 59.032 47.619 0.00 0.00 0.00 3.71
154 155 2.069273 GTCCATATTCCGGCATCTTCG 58.931 52.381 0.00 0.00 0.00 3.79
155 156 3.070018 CTGTCCATATTCCGGCATCTTC 58.930 50.000 0.00 0.00 0.00 2.87
156 157 2.439507 ACTGTCCATATTCCGGCATCTT 59.560 45.455 0.00 0.00 0.00 2.40
157 158 2.050144 ACTGTCCATATTCCGGCATCT 58.950 47.619 0.00 0.00 0.00 2.90
158 159 2.146342 CACTGTCCATATTCCGGCATC 58.854 52.381 0.00 0.00 0.00 3.91
159 160 1.202806 CCACTGTCCATATTCCGGCAT 60.203 52.381 0.00 0.00 0.00 4.40
160 161 0.180171 CCACTGTCCATATTCCGGCA 59.820 55.000 0.00 0.00 0.00 5.69
161 162 1.166531 GCCACTGTCCATATTCCGGC 61.167 60.000 0.00 0.00 0.00 6.13
162 163 0.180171 TGCCACTGTCCATATTCCGG 59.820 55.000 0.00 0.00 0.00 5.14
163 164 1.586422 CTGCCACTGTCCATATTCCG 58.414 55.000 0.00 0.00 0.00 4.30
164 165 1.972872 CCTGCCACTGTCCATATTCC 58.027 55.000 0.00 0.00 0.00 3.01
165 166 1.312815 GCCTGCCACTGTCCATATTC 58.687 55.000 0.00 0.00 0.00 1.75
166 167 0.625316 TGCCTGCCACTGTCCATATT 59.375 50.000 0.00 0.00 0.00 1.28
167 168 0.182061 CTGCCTGCCACTGTCCATAT 59.818 55.000 0.00 0.00 0.00 1.78
168 169 1.603842 CTGCCTGCCACTGTCCATA 59.396 57.895 0.00 0.00 0.00 2.74
169 170 2.353958 CTGCCTGCCACTGTCCAT 59.646 61.111 0.00 0.00 0.00 3.41
170 171 3.957586 CCTGCCTGCCACTGTCCA 61.958 66.667 0.00 0.00 0.00 4.02
174 175 2.874648 TAATCGCCTGCCTGCCACTG 62.875 60.000 0.00 0.00 0.00 3.66
175 176 2.599645 CTAATCGCCTGCCTGCCACT 62.600 60.000 0.00 0.00 0.00 4.00
176 177 2.124736 TAATCGCCTGCCTGCCAC 60.125 61.111 0.00 0.00 0.00 5.01
177 178 2.190313 CTAATCGCCTGCCTGCCA 59.810 61.111 0.00 0.00 0.00 4.92
178 179 0.179056 TAACTAATCGCCTGCCTGCC 60.179 55.000 0.00 0.00 0.00 4.85
179 180 1.330829 GTTAACTAATCGCCTGCCTGC 59.669 52.381 0.00 0.00 0.00 4.85
180 181 2.351726 GTGTTAACTAATCGCCTGCCTG 59.648 50.000 7.22 0.00 0.00 4.85
181 182 2.629051 GTGTTAACTAATCGCCTGCCT 58.371 47.619 7.22 0.00 0.00 4.75
182 183 1.669265 GGTGTTAACTAATCGCCTGCC 59.331 52.381 7.22 0.00 0.00 4.85
183 184 1.669265 GGGTGTTAACTAATCGCCTGC 59.331 52.381 7.22 0.00 32.98 4.85
184 185 3.261981 AGGGTGTTAACTAATCGCCTG 57.738 47.619 7.22 0.00 32.98 4.85
185 186 3.994931 AAGGGTGTTAACTAATCGCCT 57.005 42.857 7.22 2.32 32.98 5.52
186 187 6.688637 AAATAAGGGTGTTAACTAATCGCC 57.311 37.500 7.22 0.00 0.00 5.54
192 193 8.641541 CGGGTCTATAAATAAGGGTGTTAACTA 58.358 37.037 7.22 0.00 0.00 2.24
193 194 7.419403 CCGGGTCTATAAATAAGGGTGTTAACT 60.419 40.741 7.22 0.00 0.00 2.24
194 195 6.707608 CCGGGTCTATAAATAAGGGTGTTAAC 59.292 42.308 0.00 0.00 0.00 2.01
195 196 6.183361 CCCGGGTCTATAAATAAGGGTGTTAA 60.183 42.308 14.18 0.00 33.22 2.01
196 197 5.307716 CCCGGGTCTATAAATAAGGGTGTTA 59.692 44.000 14.18 0.00 33.22 2.41
197 198 4.103627 CCCGGGTCTATAAATAAGGGTGTT 59.896 45.833 14.18 0.00 33.22 3.32
198 199 3.649502 CCCGGGTCTATAAATAAGGGTGT 59.350 47.826 14.18 0.00 33.22 4.16
199 200 3.008704 CCCCGGGTCTATAAATAAGGGTG 59.991 52.174 21.85 0.00 35.98 4.61
200 201 3.254089 CCCCGGGTCTATAAATAAGGGT 58.746 50.000 21.85 0.00 35.98 4.34
201 202 3.254089 ACCCCGGGTCTATAAATAAGGG 58.746 50.000 21.85 0.21 38.04 3.95
202 203 5.722923 TGATACCCCGGGTCTATAAATAAGG 59.277 44.000 21.85 0.72 37.09 2.69
203 204 6.666546 TCTGATACCCCGGGTCTATAAATAAG 59.333 42.308 21.85 2.45 37.09 1.73
204 205 6.438425 GTCTGATACCCCGGGTCTATAAATAA 59.562 42.308 21.85 0.00 37.09 1.40
205 206 5.954150 GTCTGATACCCCGGGTCTATAAATA 59.046 44.000 21.85 0.00 37.09 1.40
206 207 4.776308 GTCTGATACCCCGGGTCTATAAAT 59.224 45.833 21.85 0.00 37.09 1.40
207 208 4.140853 AGTCTGATACCCCGGGTCTATAAA 60.141 45.833 21.85 0.00 37.09 1.40
208 209 3.400322 AGTCTGATACCCCGGGTCTATAA 59.600 47.826 21.85 6.03 37.09 0.98
209 210 2.991713 AGTCTGATACCCCGGGTCTATA 59.008 50.000 21.85 6.61 37.09 1.31
210 211 1.787676 AGTCTGATACCCCGGGTCTAT 59.212 52.381 21.85 13.70 37.09 1.98
211 212 1.229131 AGTCTGATACCCCGGGTCTA 58.771 55.000 21.85 8.81 37.09 2.59
212 213 1.229131 TAGTCTGATACCCCGGGTCT 58.771 55.000 21.85 2.36 37.09 3.85
213 214 2.077687 TTAGTCTGATACCCCGGGTC 57.922 55.000 21.85 11.57 37.09 4.46
214 215 2.502947 GTTTTAGTCTGATACCCCGGGT 59.497 50.000 21.85 15.24 40.16 5.28
215 216 2.482490 CGTTTTAGTCTGATACCCCGGG 60.482 54.545 15.80 15.80 0.00 5.73
216 217 2.817901 CGTTTTAGTCTGATACCCCGG 58.182 52.381 0.00 0.00 0.00 5.73
217 218 2.199236 GCGTTTTAGTCTGATACCCCG 58.801 52.381 0.00 0.00 0.00 5.73
218 219 2.558378 GGCGTTTTAGTCTGATACCCC 58.442 52.381 0.00 0.00 0.00 4.95
219 220 2.169978 AGGGCGTTTTAGTCTGATACCC 59.830 50.000 0.00 0.00 34.91 3.69
220 221 3.538634 AGGGCGTTTTAGTCTGATACC 57.461 47.619 0.00 0.00 0.00 2.73
221 222 5.413499 TGTTAGGGCGTTTTAGTCTGATAC 58.587 41.667 0.00 0.00 0.00 2.24
222 223 5.664294 TGTTAGGGCGTTTTAGTCTGATA 57.336 39.130 0.00 0.00 0.00 2.15
223 224 4.546829 TGTTAGGGCGTTTTAGTCTGAT 57.453 40.909 0.00 0.00 0.00 2.90
224 225 4.312443 CTTGTTAGGGCGTTTTAGTCTGA 58.688 43.478 0.00 0.00 0.00 3.27
225 226 3.435671 CCTTGTTAGGGCGTTTTAGTCTG 59.564 47.826 0.00 0.00 37.94 3.51
226 227 3.671716 CCTTGTTAGGGCGTTTTAGTCT 58.328 45.455 0.00 0.00 37.94 3.24
227 228 2.161012 GCCTTGTTAGGGCGTTTTAGTC 59.839 50.000 0.00 0.00 42.25 2.59
228 229 2.156917 GCCTTGTTAGGGCGTTTTAGT 58.843 47.619 0.00 0.00 42.25 2.24
229 230 2.913777 GCCTTGTTAGGGCGTTTTAG 57.086 50.000 0.00 0.00 42.25 1.85
237 238 0.625849 AGACCCATGCCTTGTTAGGG 59.374 55.000 0.00 0.00 42.25 3.53
238 239 1.683011 CCAGACCCATGCCTTGTTAGG 60.683 57.143 0.00 0.00 45.02 2.69
239 240 1.004745 ACCAGACCCATGCCTTGTTAG 59.995 52.381 0.00 0.00 0.00 2.34
240 241 1.072266 ACCAGACCCATGCCTTGTTA 58.928 50.000 0.00 0.00 0.00 2.41
241 242 0.540365 CACCAGACCCATGCCTTGTT 60.540 55.000 0.00 0.00 0.00 2.83
242 243 1.075482 CACCAGACCCATGCCTTGT 59.925 57.895 0.00 0.00 0.00 3.16
243 244 0.962356 GACACCAGACCCATGCCTTG 60.962 60.000 0.00 0.00 0.00 3.61
244 245 1.136329 AGACACCAGACCCATGCCTT 61.136 55.000 0.00 0.00 0.00 4.35
245 246 1.539869 AGACACCAGACCCATGCCT 60.540 57.895 0.00 0.00 0.00 4.75
246 247 1.078143 GAGACACCAGACCCATGCC 60.078 63.158 0.00 0.00 0.00 4.40
247 248 1.448540 CGAGACACCAGACCCATGC 60.449 63.158 0.00 0.00 0.00 4.06
248 249 1.219124 CCGAGACACCAGACCCATG 59.781 63.158 0.00 0.00 0.00 3.66
249 250 1.229209 ACCGAGACACCAGACCCAT 60.229 57.895 0.00 0.00 0.00 4.00
250 251 1.906824 GACCGAGACACCAGACCCA 60.907 63.158 0.00 0.00 0.00 4.51
251 252 1.906824 TGACCGAGACACCAGACCC 60.907 63.158 0.00 0.00 0.00 4.46
252 253 1.289380 GTGACCGAGACACCAGACC 59.711 63.158 0.00 0.00 32.84 3.85
253 254 4.968197 GTGACCGAGACACCAGAC 57.032 61.111 0.00 0.00 32.84 3.51
271 272 4.039092 CTCACAGGGCCACCAGGG 62.039 72.222 6.18 0.00 40.13 4.45
272 273 2.754664 GAACTCACAGGGCCACCAGG 62.755 65.000 6.18 0.00 40.13 4.45
273 274 1.302832 GAACTCACAGGGCCACCAG 60.303 63.158 6.18 0.00 40.13 4.00
274 275 0.472925 TAGAACTCACAGGGCCACCA 60.473 55.000 6.18 0.00 40.13 4.17
275 276 0.690762 TTAGAACTCACAGGGCCACC 59.309 55.000 6.18 0.00 0.00 4.61
276 277 2.561478 TTTAGAACTCACAGGGCCAC 57.439 50.000 6.18 0.00 0.00 5.01
277 278 3.806949 ATTTTAGAACTCACAGGGCCA 57.193 42.857 6.18 0.00 0.00 5.36
278 279 4.079253 TCAATTTTAGAACTCACAGGGCC 58.921 43.478 0.00 0.00 0.00 5.80
279 280 5.705609 TTCAATTTTAGAACTCACAGGGC 57.294 39.130 0.00 0.00 0.00 5.19
280 281 6.015940 AGCTTTCAATTTTAGAACTCACAGGG 60.016 38.462 0.00 0.00 0.00 4.45
281 282 6.974965 AGCTTTCAATTTTAGAACTCACAGG 58.025 36.000 0.00 0.00 0.00 4.00
282 283 9.950680 TTAAGCTTTCAATTTTAGAACTCACAG 57.049 29.630 3.20 0.00 0.00 3.66
283 284 9.730420 GTTAAGCTTTCAATTTTAGAACTCACA 57.270 29.630 3.20 0.00 0.00 3.58
284 285 9.952188 AGTTAAGCTTTCAATTTTAGAACTCAC 57.048 29.630 3.20 0.00 0.00 3.51
767 768 4.019411 TGTGGATGAGGTGATTTTGCTCTA 60.019 41.667 0.00 0.00 0.00 2.43
818 819 1.074775 GGGACATTGTGAGGTGGCA 59.925 57.895 0.00 0.00 0.00 4.92
891 892 3.133901 TGTGAATGGTGTAGTGTGTGAGT 59.866 43.478 0.00 0.00 0.00 3.41
960 961 6.319911 ACAGAGGGAGAAACAAAGAGAAAAAG 59.680 38.462 0.00 0.00 0.00 2.27
1438 1439 1.884579 ACCTTGCAGCACTTGATCTTG 59.115 47.619 0.00 0.00 0.00 3.02
1764 1767 0.586319 CGTGCGCCCGAATAAATCAT 59.414 50.000 6.36 0.00 0.00 2.45
1780 1785 3.811722 ACATGCATGTTTACTGACGTG 57.188 42.857 26.61 0.00 37.90 4.49
1885 1892 5.607119 ACTATTGTTCTACGTTTTGCAGG 57.393 39.130 0.00 0.00 0.00 4.85
1920 1927 3.756963 GAGCCTTCCCGAAAACTATTGTT 59.243 43.478 0.00 0.00 38.16 2.83
1925 1932 3.705051 TCTAGAGCCTTCCCGAAAACTA 58.295 45.455 0.00 0.00 0.00 2.24
1926 1933 2.537143 TCTAGAGCCTTCCCGAAAACT 58.463 47.619 0.00 0.00 0.00 2.66
1927 1934 3.329929 TTCTAGAGCCTTCCCGAAAAC 57.670 47.619 0.00 0.00 0.00 2.43
1928 1935 4.019681 TCATTTCTAGAGCCTTCCCGAAAA 60.020 41.667 0.00 0.00 30.66 2.29
1929 1936 3.517901 TCATTTCTAGAGCCTTCCCGAAA 59.482 43.478 0.00 0.00 0.00 3.46
1930 1937 3.104512 TCATTTCTAGAGCCTTCCCGAA 58.895 45.455 0.00 0.00 0.00 4.30
1931 1938 2.747177 TCATTTCTAGAGCCTTCCCGA 58.253 47.619 0.00 0.00 0.00 5.14
1937 1944 8.414629 ACATTTCTTTTTCATTTCTAGAGCCT 57.585 30.769 0.00 0.00 0.00 4.58
1972 1979 3.375299 CCATGTTTTTCTTCCCTAGAGCG 59.625 47.826 0.00 0.00 33.51 5.03
2018 2025 4.778213 AGCATGTTCATCCCTTTAGCTA 57.222 40.909 0.00 0.00 0.00 3.32
2019 2026 3.659183 AGCATGTTCATCCCTTTAGCT 57.341 42.857 0.00 0.00 0.00 3.32
2028 2035 9.630098 TCAAAATAAAAGAGAAGCATGTTCATC 57.370 29.630 9.64 0.00 0.00 2.92
2058 2065 4.577693 TCAAGCAGGATCTCATGTTATTGC 59.422 41.667 0.00 0.00 0.00 3.56
2103 2110 9.508567 GAATTTTTAGAGTCCAGCAATAATCAC 57.491 33.333 0.00 0.00 0.00 3.06
2164 2171 7.042051 GCTTCTATGCGGAAAGTTATGATGTTA 60.042 37.037 0.00 0.00 0.00 2.41
2169 2176 5.023533 AGCTTCTATGCGGAAAGTTATGA 57.976 39.130 0.00 0.00 38.13 2.15
2172 2179 6.378582 CAAAAAGCTTCTATGCGGAAAGTTA 58.621 36.000 0.00 0.00 38.13 2.24
2175 2182 4.168760 CCAAAAAGCTTCTATGCGGAAAG 58.831 43.478 0.00 0.00 38.13 2.62
2178 2185 1.472480 GCCAAAAAGCTTCTATGCGGA 59.528 47.619 0.00 0.00 38.13 5.54
2180 2187 1.795162 CGGCCAAAAAGCTTCTATGCG 60.795 52.381 2.24 0.00 38.13 4.73
2181 2188 1.202348 ACGGCCAAAAAGCTTCTATGC 59.798 47.619 2.24 0.61 0.00 3.14
2206 2213 0.110056 CAAACGCCTACTTGCAGCTG 60.110 55.000 10.11 10.11 0.00 4.24
2220 2227 5.499047 GCCTCGGATTTATTCTAACAAACG 58.501 41.667 0.00 0.00 0.00 3.60
2236 2243 2.578786 TGATTGACTATACGCCTCGGA 58.421 47.619 0.00 0.00 0.00 4.55
2252 2259 5.009631 TGATTGTTTGGTCTTCGGATGATT 58.990 37.500 0.00 0.00 0.00 2.57
2259 2266 5.095490 GCCTTTATGATTGTTTGGTCTTCG 58.905 41.667 0.00 0.00 0.00 3.79
2262 2269 5.716228 TCATGCCTTTATGATTGTTTGGTCT 59.284 36.000 0.00 0.00 32.39 3.85
2264 2271 5.245751 TGTCATGCCTTTATGATTGTTTGGT 59.754 36.000 0.00 0.00 39.13 3.67
2273 2280 2.499693 TCTCGGTGTCATGCCTTTATGA 59.500 45.455 0.00 0.00 34.83 2.15
2280 2287 1.453155 ACAAATCTCGGTGTCATGCC 58.547 50.000 0.00 0.00 0.00 4.40
2316 2323 1.343681 GGCCCCGGGGATATAGTCATA 60.344 57.143 44.86 0.00 37.50 2.15
2324 2331 1.746929 ATAGTCAGGCCCCGGGGATA 61.747 60.000 44.86 23.14 37.50 2.59
2326 2333 2.850851 AAATAGTCAGGCCCCGGGGA 62.851 60.000 44.86 21.69 37.50 4.81
2397 6327 9.339850 GTTGTACCTCTATCTGTACTCATTCTA 57.660 37.037 0.00 0.00 38.48 2.10
2399 6329 7.916450 GTGTTGTACCTCTATCTGTACTCATTC 59.084 40.741 0.00 0.00 38.48 2.67
2415 6345 3.128349 GTTCGTGTCATGTGTTGTACCT 58.872 45.455 0.00 0.00 0.00 3.08
2440 6370 1.873591 GACACCATGTTCACACCTGTC 59.126 52.381 0.00 0.00 0.00 3.51
2446 6376 1.606994 GCTACGGACACCATGTTCACA 60.607 52.381 0.00 0.00 0.00 3.58
2456 6386 4.056050 TCTTTTCTTTCTGCTACGGACAC 58.944 43.478 0.00 0.00 0.00 3.67
2457 6387 4.038763 TCTCTTTTCTTTCTGCTACGGACA 59.961 41.667 0.00 0.00 0.00 4.02
2458 6388 4.557205 TCTCTTTTCTTTCTGCTACGGAC 58.443 43.478 0.00 0.00 0.00 4.79
2459 6389 4.866508 TCTCTTTTCTTTCTGCTACGGA 57.133 40.909 0.00 0.00 0.00 4.69
2463 6393 4.867047 CGAGCATCTCTTTTCTTTCTGCTA 59.133 41.667 0.00 0.00 38.50 3.49
2483 6413 1.874872 GTATCCTCTCTTCGGGTCGAG 59.125 57.143 0.00 0.00 37.14 4.04
2488 6418 4.142271 GCTATGATGTATCCTCTCTTCGGG 60.142 50.000 0.00 0.00 0.00 5.14
2497 6427 7.016914 TGGTAGGTTTAGCTATGATGTATCCT 58.983 38.462 0.00 0.00 0.00 3.24
2508 6438 3.172339 TCGGGTTTGGTAGGTTTAGCTA 58.828 45.455 0.00 0.00 0.00 3.32
2518 6448 1.770061 ACTCTTGGTTCGGGTTTGGTA 59.230 47.619 0.00 0.00 0.00 3.25
2572 6502 1.202722 TGTCCTCGGTTTTGGTTCTCC 60.203 52.381 0.00 0.00 0.00 3.71
2573 6503 1.871676 GTGTCCTCGGTTTTGGTTCTC 59.128 52.381 0.00 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.