Multiple sequence alignment - TraesCS5D01G117600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G117600 chr5D 100.000 4400 0 0 4761 9160 142354331 142349932 0.000000e+00 8126.0
1 TraesCS5D01G117600 chr5D 100.000 4298 0 0 1 4298 142359091 142354794 0.000000e+00 7938.0
2 TraesCS5D01G117600 chr5D 82.206 281 24 7 10 265 192283158 192283437 1.550000e-52 219.0
3 TraesCS5D01G117600 chr5D 92.157 153 12 0 2723 2875 526241422 526241574 5.570000e-52 217.0
4 TraesCS5D01G117600 chr5A 96.475 2638 68 10 4761 7384 174265767 174268393 0.000000e+00 4333.0
5 TraesCS5D01G117600 chr5A 96.625 1689 43 7 7476 9160 174268914 174270592 0.000000e+00 2791.0
6 TraesCS5D01G117600 chr5A 95.545 1414 33 10 1815 3223 174262939 174264327 0.000000e+00 2235.0
7 TraesCS5D01G117600 chr5A 95.191 1019 26 11 741 1740 174261482 174262496 0.000000e+00 1589.0
8 TraesCS5D01G117600 chr5A 92.155 1007 43 18 3260 4245 174264575 174265566 0.000000e+00 1389.0
9 TraesCS5D01G117600 chr5A 97.872 94 2 0 7382 7475 174268666 174268759 7.360000e-36 163.0
10 TraesCS5D01G117600 chr5B 95.236 2708 71 15 1641 4298 165083550 165086249 0.000000e+00 4233.0
11 TraesCS5D01G117600 chr5B 96.432 2018 29 12 5394 7384 165087790 165089791 0.000000e+00 3288.0
12 TraesCS5D01G117600 chr5B 94.006 1318 65 10 266 1579 165082243 165083550 0.000000e+00 1984.0
13 TraesCS5D01G117600 chr5B 93.243 962 36 10 8202 9160 165091009 165091944 0.000000e+00 1389.0
14 TraesCS5D01G117600 chr5B 98.711 698 7 1 7476 8171 165090312 165091009 0.000000e+00 1238.0
15 TraesCS5D01G117600 chr5B 91.912 272 15 4 2 266 165077497 165077768 3.120000e-99 374.0
16 TraesCS5D01G117600 chr5B 93.227 251 17 0 4769 5019 165086448 165086698 4.040000e-98 370.0
17 TraesCS5D01G117600 chr5B 93.443 244 9 3 4943 5179 165086706 165086949 1.130000e-93 355.0
18 TraesCS5D01G117600 chr5B 87.833 263 22 3 6 268 192285496 192285748 5.380000e-77 300.0
19 TraesCS5D01G117600 chr5B 83.178 321 33 14 444 762 94672320 94672621 3.260000e-69 274.0
20 TraesCS5D01G117600 chr5B 93.960 149 8 1 6465 6613 574956592 574956445 3.330000e-54 224.0
21 TraesCS5D01G117600 chr5B 98.824 85 1 0 7390 7474 165090068 165090152 1.590000e-32 152.0
22 TraesCS5D01G117600 chr5B 89.655 87 9 0 4940 5026 165086661 165086747 2.700000e-20 111.0
23 TraesCS5D01G117600 chr7D 82.919 322 40 7 447 766 610671375 610671067 9.060000e-70 276.0
24 TraesCS5D01G117600 chr7D 91.250 160 14 0 2723 2882 48555277 48555436 1.550000e-52 219.0
25 TraesCS5D01G117600 chr7D 91.083 157 14 0 2723 2879 229802496 229802652 7.200000e-51 213.0
26 TraesCS5D01G117600 chr7D 91.667 60 3 2 3348 3406 300941156 300941098 2.120000e-11 82.4
27 TraesCS5D01G117600 chr7D 91.667 60 3 2 3348 3406 301096072 301096014 2.120000e-11 82.4
28 TraesCS5D01G117600 chr7D 86.567 67 8 1 3101 3166 173799898 173799964 1.280000e-08 73.1
29 TraesCS5D01G117600 chr2B 85.932 263 29 5 8 268 473208100 473207844 3.260000e-69 274.0
30 TraesCS5D01G117600 chr2B 86.667 225 27 3 448 670 207234532 207234309 7.100000e-61 246.0
31 TraesCS5D01G117600 chr2B 94.000 150 8 1 6465 6614 140765964 140766112 9.250000e-55 226.0
32 TraesCS5D01G117600 chr2B 93.333 150 9 1 6465 6614 248148078 248148226 4.310000e-53 220.0
33 TraesCS5D01G117600 chr2B 93.750 48 3 0 3122 3169 255571239 255571192 1.280000e-08 73.1
34 TraesCS5D01G117600 chr2A 85.932 263 29 5 8 268 536700635 536700379 3.260000e-69 274.0
35 TraesCS5D01G117600 chr2A 87.500 56 6 1 5123 5177 748448727 748448782 7.680000e-06 63.9
36 TraesCS5D01G117600 chr7B 85.502 269 26 8 2 268 285584027 285583770 1.520000e-67 268.0
37 TraesCS5D01G117600 chr7B 81.115 323 43 10 447 766 710460028 710460335 9.190000e-60 243.0
38 TraesCS5D01G117600 chr7B 78.571 182 34 5 88 268 227120304 227120127 2.090000e-21 115.0
39 TraesCS5D01G117600 chr7B 88.060 67 7 1 3101 3166 138654295 138654361 2.740000e-10 78.7
40 TraesCS5D01G117600 chr7A 82.759 319 38 8 445 760 33352311 33352007 1.520000e-67 268.0
41 TraesCS5D01G117600 chr7A 92.308 156 11 1 6465 6620 83784981 83784827 4.310000e-53 220.0
42 TraesCS5D01G117600 chr7A 86.567 67 8 1 3101 3166 175843727 175843793 1.280000e-08 73.1
43 TraesCS5D01G117600 chr7A 100.000 30 0 0 402 431 602046282 602046311 1.000000e-03 56.5
44 TraesCS5D01G117600 chr6D 84.871 271 29 9 8 268 344533319 344533051 7.050000e-66 263.0
45 TraesCS5D01G117600 chr6D 77.941 272 27 18 6175 6435 68694489 68694738 1.240000e-28 139.0
46 TraesCS5D01G117600 chr6D 81.013 158 28 2 88 245 10623779 10623934 3.470000e-24 124.0
47 TraesCS5D01G117600 chr6D 92.727 55 4 0 3348 3402 168570282 168570228 7.620000e-11 80.5
48 TraesCS5D01G117600 chr6D 95.833 48 2 0 3349 3396 134645981 134645934 2.740000e-10 78.7
49 TraesCS5D01G117600 chr6D 89.583 48 4 1 5130 5176 460807067 460807114 9.930000e-05 60.2
50 TraesCS5D01G117600 chrUn 81.481 324 45 4 445 766 65963347 65963657 1.530000e-62 252.0
51 TraesCS5D01G117600 chrUn 91.503 153 13 0 2723 2875 89020719 89020871 2.590000e-50 211.0
52 TraesCS5D01G117600 chrUn 88.000 50 4 2 718 766 343437730 343437778 3.570000e-04 58.4
53 TraesCS5D01G117600 chr2D 86.547 223 27 3 444 665 180898019 180898239 9.190000e-60 243.0
54 TraesCS5D01G117600 chr2D 89.820 167 17 0 2723 2889 651313662 651313828 2.000000e-51 215.0
55 TraesCS5D01G117600 chr2D 94.118 51 3 0 3349 3399 641572377 641572427 2.740000e-10 78.7
56 TraesCS5D01G117600 chr2D 93.182 44 3 0 5137 5180 35965761 35965718 2.130000e-06 65.8
57 TraesCS5D01G117600 chr2D 95.122 41 2 0 3129 3169 198621749 198621709 2.130000e-06 65.8
58 TraesCS5D01G117600 chr2D 90.698 43 4 0 3124 3166 74933977 74934019 3.570000e-04 58.4
59 TraesCS5D01G117600 chr3B 81.695 295 33 9 450 742 699968883 699968608 9.250000e-55 226.0
60 TraesCS5D01G117600 chr3B 92.857 42 1 2 3121 3161 728751818 728751778 9.930000e-05 60.2
61 TraesCS5D01G117600 chr6A 93.333 150 9 1 6465 6614 153373035 153372887 4.310000e-53 220.0
62 TraesCS5D01G117600 chr6A 90.244 164 13 3 6460 6623 178890753 178890593 2.590000e-50 211.0
63 TraesCS5D01G117600 chr3D 93.289 149 9 1 6465 6613 422517840 422517987 1.550000e-52 219.0
64 TraesCS5D01G117600 chr3D 90.566 159 15 0 2723 2881 345758200 345758042 2.590000e-50 211.0
65 TraesCS5D01G117600 chr3D 89.583 48 4 1 5130 5176 553331604 553331651 9.930000e-05 60.2
66 TraesCS5D01G117600 chr4B 81.887 265 40 8 8 268 296175038 296175298 5.570000e-52 217.0
67 TraesCS5D01G117600 chr4B 78.671 286 32 15 8 268 320132948 320132667 7.360000e-36 163.0
68 TraesCS5D01G117600 chr1B 90.625 160 15 0 2723 2882 32368129 32368288 7.200000e-51 213.0
69 TraesCS5D01G117600 chr4D 91.026 156 14 0 2723 2878 11294720 11294565 2.590000e-50 211.0
70 TraesCS5D01G117600 chr1D 84.492 187 27 2 82 268 171011656 171011840 5.650000e-42 183.0
71 TraesCS5D01G117600 chr1D 91.667 60 3 2 3348 3406 41216519 41216461 2.120000e-11 82.4
72 TraesCS5D01G117600 chr4A 88.235 68 5 3 3332 3399 677117172 677117236 2.740000e-10 78.7
73 TraesCS5D01G117600 chr4A 95.556 45 0 2 5137 5180 713097923 713097880 4.590000e-08 71.3
74 TraesCS5D01G117600 chr6B 92.308 52 3 1 5138 5189 487565042 487565092 1.280000e-08 73.1
75 TraesCS5D01G117600 chr6B 90.909 44 3 1 6200 6242 143750463 143750506 3.570000e-04 58.4
76 TraesCS5D01G117600 chr1A 90.566 53 3 2 5137 5188 582756259 582756208 1.650000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G117600 chr5D 142349932 142359091 9159 True 8032.000000 8126 100.000000 1 9160 2 chr5D.!!$R1 9159
1 TraesCS5D01G117600 chr5A 174261482 174270592 9110 False 2083.333333 4333 95.643833 741 9160 6 chr5A.!!$F1 8419
2 TraesCS5D01G117600 chr5B 165082243 165091944 9701 False 1457.777778 4233 94.753000 266 9160 9 chr5B.!!$F4 8894

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
133 134 0.030638 CCGCACAACCAAGGAACAAG 59.969 55.000 0.00 0.00 0.00 3.16 F
858 865 0.105039 CCGATACCCACCTCTTCTGC 59.895 60.000 0.00 0.00 0.00 4.26 F
859 866 0.249073 CGATACCCACCTCTTCTGCG 60.249 60.000 0.00 0.00 0.00 5.18 F
1016 1024 1.098050 GCCATGGCTACCTTCACTTG 58.902 55.000 29.98 0.00 38.26 3.16 F
1350 1358 1.137697 ACCCGGAGAACACCTTCTTT 58.862 50.000 0.73 0.00 36.82 2.52 F
3452 4086 0.179048 CTGGCCGGCTGAACATCATA 60.179 55.000 28.56 0.00 0.00 2.15 F
3706 4341 0.253894 CAGTGCAGATCCATCCCACA 59.746 55.000 0.00 0.00 34.15 4.17 F
4250 4921 1.076485 GGGAGCTGCAACCCATCAT 60.076 57.895 23.39 0.00 44.96 2.45 F
5136 5920 1.335872 CGTCCAATCAAAGGGTTGCAC 60.336 52.381 0.00 0.00 34.50 4.57 F
6337 7785 1.165907 TCCCTGCAGTGCAAGAAACG 61.166 55.000 20.22 6.02 38.41 3.60 F
6618 8066 1.829456 GGGCTGCCCTTTTTGTTGT 59.171 52.632 30.42 0.00 41.34 3.32 F
7787 9696 2.994578 GGTAGAAGAAGCCGACAAGTTC 59.005 50.000 0.00 0.00 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1350 1358 0.516877 CAATGAAGCGCTTGACGGAA 59.483 50.000 30.47 6.04 43.93 4.30 R
2767 3178 4.001652 TCTCGCTAATAGCACGCTATAGT 58.998 43.478 13.15 0.68 42.58 2.12 R
2997 3416 6.012508 TCCAGGAACAATAGAAGAGGAATTGT 60.013 38.462 0.00 0.00 43.74 2.71 R
3076 3495 1.202510 GCAGGAAATTTGGTGTGTGCA 60.203 47.619 0.00 0.00 0.00 4.57 R
3499 4133 0.319555 CCTGTGTCACGTGGGTAGTG 60.320 60.000 17.00 2.27 40.71 2.74 R
5146 5930 1.073373 TCGACCGGCCCAAATTTCA 59.927 52.632 0.00 0.00 0.00 2.69 R
5293 6735 2.021457 CCCCACAAAAGAACGTGAAGT 58.979 47.619 0.00 0.00 35.02 3.01 R
5835 7282 3.119352 GCTGAAGGGCTTGTTTATCCTTG 60.119 47.826 0.00 0.00 39.46 3.61 R
6731 8180 1.734465 GGTCTTGCACTGTACATGCTC 59.266 52.381 22.31 13.82 43.77 4.26 R
7787 9696 1.078848 CTCTTTGTCCTCCTGGGCG 60.079 63.158 0.00 0.00 41.88 6.13 R
7969 9878 2.173519 CCTCCATGGCAGTTTTCATGT 58.826 47.619 6.96 0.00 39.12 3.21 R
8985 10930 1.429463 AAGAGCGTTCAATCGACCAC 58.571 50.000 1.01 0.00 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.387119 CATCAAGAATGTTGAGGAAGATTCA 57.613 36.000 0.00 0.00 41.96 2.57
25 26 6.808008 TCAAGAATGTTGAGGAAGATTCAC 57.192 37.500 0.00 0.00 41.96 3.18
26 27 6.298361 TCAAGAATGTTGAGGAAGATTCACA 58.702 36.000 0.00 0.00 41.96 3.58
27 28 6.772233 TCAAGAATGTTGAGGAAGATTCACAA 59.228 34.615 0.00 0.00 41.96 3.33
28 29 7.285172 TCAAGAATGTTGAGGAAGATTCACAAA 59.715 33.333 0.00 0.85 41.96 2.83
29 30 7.587037 AGAATGTTGAGGAAGATTCACAAAA 57.413 32.000 0.00 3.00 41.96 2.44
30 31 8.186709 AGAATGTTGAGGAAGATTCACAAAAT 57.813 30.769 0.00 4.68 41.96 1.82
31 32 8.645110 AGAATGTTGAGGAAGATTCACAAAATT 58.355 29.630 14.30 14.30 41.96 1.82
32 33 8.597662 AATGTTGAGGAAGATTCACAAAATTG 57.402 30.769 13.93 0.00 34.69 2.32
33 34 5.984926 TGTTGAGGAAGATTCACAAAATTGC 59.015 36.000 6.18 0.00 31.09 3.56
34 35 5.787953 TGAGGAAGATTCACAAAATTGCA 57.212 34.783 0.00 0.00 0.00 4.08
35 36 6.159299 TGAGGAAGATTCACAAAATTGCAA 57.841 33.333 0.00 0.00 0.00 4.08
36 37 6.761312 TGAGGAAGATTCACAAAATTGCAAT 58.239 32.000 5.99 5.99 0.00 3.56
37 38 6.647481 TGAGGAAGATTCACAAAATTGCAATG 59.353 34.615 13.82 4.68 0.00 2.82
38 39 6.527423 AGGAAGATTCACAAAATTGCAATGT 58.473 32.000 13.82 3.97 0.00 2.71
39 40 7.669427 AGGAAGATTCACAAAATTGCAATGTA 58.331 30.769 13.82 0.00 0.00 2.29
40 41 8.149647 AGGAAGATTCACAAAATTGCAATGTAA 58.850 29.630 13.82 0.00 0.00 2.41
41 42 8.772705 GGAAGATTCACAAAATTGCAATGTAAA 58.227 29.630 13.82 0.77 0.00 2.01
42 43 9.801714 GAAGATTCACAAAATTGCAATGTAAAG 57.198 29.630 13.82 3.98 0.00 1.85
43 44 7.799784 AGATTCACAAAATTGCAATGTAAAGC 58.200 30.769 13.82 3.65 0.00 3.51
44 45 6.915544 TTCACAAAATTGCAATGTAAAGCA 57.084 29.167 13.82 0.00 39.32 3.91
57 58 9.955208 TGCAATGTAAAGCAAATAGATCAATAG 57.045 29.630 0.00 0.00 37.90 1.73
58 59 8.909671 GCAATGTAAAGCAAATAGATCAATAGC 58.090 33.333 0.00 0.00 0.00 2.97
66 67 8.789825 AGCAAATAGATCAATAGCTATCTTGG 57.210 34.615 6.72 0.00 33.17 3.61
67 68 7.336427 AGCAAATAGATCAATAGCTATCTTGGC 59.664 37.037 6.72 4.33 33.17 4.52
68 69 7.120285 GCAAATAGATCAATAGCTATCTTGGCA 59.880 37.037 6.72 0.00 33.17 4.92
69 70 8.449397 CAAATAGATCAATAGCTATCTTGGCAC 58.551 37.037 6.72 0.07 33.17 5.01
70 71 5.557576 AGATCAATAGCTATCTTGGCACA 57.442 39.130 6.72 0.00 0.00 4.57
71 72 7.683578 ATAGATCAATAGCTATCTTGGCACAA 58.316 34.615 6.72 0.00 34.31 3.33
72 73 8.159447 ATAGATCAATAGCTATCTTGGCACAAA 58.841 33.333 6.72 0.00 34.31 2.83
85 86 1.707632 GCACAAAGCAAACACACACA 58.292 45.000 0.00 0.00 44.79 3.72
86 87 1.389784 GCACAAAGCAAACACACACAC 59.610 47.619 0.00 0.00 44.79 3.82
87 88 2.670479 CACAAAGCAAACACACACACA 58.330 42.857 0.00 0.00 0.00 3.72
88 89 2.408032 CACAAAGCAAACACACACACAC 59.592 45.455 0.00 0.00 0.00 3.82
89 90 2.035193 ACAAAGCAAACACACACACACA 59.965 40.909 0.00 0.00 0.00 3.72
90 91 2.346099 AAGCAAACACACACACACAC 57.654 45.000 0.00 0.00 0.00 3.82
91 92 1.242989 AGCAAACACACACACACACA 58.757 45.000 0.00 0.00 0.00 3.72
92 93 1.068610 AGCAAACACACACACACACAC 60.069 47.619 0.00 0.00 0.00 3.82
93 94 1.335415 GCAAACACACACACACACACA 60.335 47.619 0.00 0.00 0.00 3.72
94 95 2.315011 CAAACACACACACACACACAC 58.685 47.619 0.00 0.00 0.00 3.82
95 96 1.598882 AACACACACACACACACACA 58.401 45.000 0.00 0.00 0.00 3.72
96 97 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
97 98 0.179227 CACACACACACACACACACG 60.179 55.000 0.00 0.00 0.00 4.49
98 99 1.295357 ACACACACACACACACACGG 61.295 55.000 0.00 0.00 0.00 4.94
99 100 1.016653 CACACACACACACACACGGA 61.017 55.000 0.00 0.00 0.00 4.69
100 101 0.107897 ACACACACACACACACGGAT 60.108 50.000 0.00 0.00 0.00 4.18
101 102 1.137282 ACACACACACACACACGGATA 59.863 47.619 0.00 0.00 0.00 2.59
102 103 1.792367 CACACACACACACACGGATAG 59.208 52.381 0.00 0.00 0.00 2.08
103 104 1.684450 ACACACACACACACGGATAGA 59.316 47.619 0.00 0.00 0.00 1.98
104 105 2.299013 ACACACACACACACGGATAGAT 59.701 45.455 0.00 0.00 0.00 1.98
105 106 2.923655 CACACACACACACGGATAGATC 59.076 50.000 0.00 0.00 0.00 2.75
106 107 2.560981 ACACACACACACGGATAGATCA 59.439 45.455 0.00 0.00 0.00 2.92
107 108 3.182182 CACACACACACGGATAGATCAG 58.818 50.000 0.00 0.00 0.00 2.90
108 109 2.826128 ACACACACACGGATAGATCAGT 59.174 45.455 0.00 0.00 35.61 3.41
119 120 4.445699 GATCAGTGGGATCCGCAC 57.554 61.111 19.96 19.96 45.58 5.34
124 125 2.033448 GTGGGATCCGCACAACCA 59.967 61.111 21.69 4.80 44.84 3.67
125 126 1.602323 GTGGGATCCGCACAACCAA 60.602 57.895 21.69 0.00 44.84 3.67
126 127 1.303236 TGGGATCCGCACAACCAAG 60.303 57.895 5.45 0.00 0.00 3.61
127 128 2.046285 GGGATCCGCACAACCAAGG 61.046 63.158 5.45 0.00 0.00 3.61
128 129 1.002624 GGATCCGCACAACCAAGGA 60.003 57.895 0.00 0.00 37.17 3.36
129 130 0.608035 GGATCCGCACAACCAAGGAA 60.608 55.000 0.00 0.00 36.25 3.36
130 131 0.521735 GATCCGCACAACCAAGGAAC 59.478 55.000 0.00 0.00 36.25 3.62
131 132 0.179004 ATCCGCACAACCAAGGAACA 60.179 50.000 0.00 0.00 36.25 3.18
132 133 0.394488 TCCGCACAACCAAGGAACAA 60.394 50.000 0.00 0.00 0.00 2.83
133 134 0.030638 CCGCACAACCAAGGAACAAG 59.969 55.000 0.00 0.00 0.00 3.16
134 135 0.594796 CGCACAACCAAGGAACAAGC 60.595 55.000 0.00 0.00 0.00 4.01
135 136 0.459489 GCACAACCAAGGAACAAGCA 59.541 50.000 0.00 0.00 0.00 3.91
136 137 1.069049 GCACAACCAAGGAACAAGCAT 59.931 47.619 0.00 0.00 0.00 3.79
137 138 2.295909 GCACAACCAAGGAACAAGCATA 59.704 45.455 0.00 0.00 0.00 3.14
138 139 3.243704 GCACAACCAAGGAACAAGCATAA 60.244 43.478 0.00 0.00 0.00 1.90
139 140 4.739137 GCACAACCAAGGAACAAGCATAAA 60.739 41.667 0.00 0.00 0.00 1.40
140 141 5.355596 CACAACCAAGGAACAAGCATAAAA 58.644 37.500 0.00 0.00 0.00 1.52
141 142 5.990996 CACAACCAAGGAACAAGCATAAAAT 59.009 36.000 0.00 0.00 0.00 1.82
142 143 5.990996 ACAACCAAGGAACAAGCATAAAATG 59.009 36.000 0.00 0.00 0.00 2.32
143 144 5.806654 ACCAAGGAACAAGCATAAAATGT 57.193 34.783 0.00 0.00 0.00 2.71
144 145 5.540911 ACCAAGGAACAAGCATAAAATGTG 58.459 37.500 0.00 0.00 0.00 3.21
145 146 5.070313 ACCAAGGAACAAGCATAAAATGTGT 59.930 36.000 0.00 0.00 0.00 3.72
146 147 5.990996 CCAAGGAACAAGCATAAAATGTGTT 59.009 36.000 0.00 0.00 33.73 3.32
147 148 7.151308 CCAAGGAACAAGCATAAAATGTGTTA 58.849 34.615 0.00 0.00 31.95 2.41
148 149 7.116233 CCAAGGAACAAGCATAAAATGTGTTAC 59.884 37.037 0.00 0.00 32.91 2.50
149 150 6.687604 AGGAACAAGCATAAAATGTGTTACC 58.312 36.000 0.00 0.00 33.08 2.85
150 151 6.266558 AGGAACAAGCATAAAATGTGTTACCA 59.733 34.615 0.00 0.00 33.08 3.25
151 152 7.039082 AGGAACAAGCATAAAATGTGTTACCAT 60.039 33.333 0.00 0.00 33.08 3.55
152 153 7.063308 GGAACAAGCATAAAATGTGTTACCATG 59.937 37.037 0.00 0.00 31.95 3.66
153 154 5.868801 ACAAGCATAAAATGTGTTACCATGC 59.131 36.000 0.00 0.00 38.02 4.06
154 155 5.657826 AGCATAAAATGTGTTACCATGCA 57.342 34.783 6.44 0.00 39.72 3.96
155 156 6.035368 AGCATAAAATGTGTTACCATGCAA 57.965 33.333 6.44 0.00 39.72 4.08
156 157 6.462500 AGCATAAAATGTGTTACCATGCAAA 58.538 32.000 6.44 0.00 39.72 3.68
157 158 6.933521 AGCATAAAATGTGTTACCATGCAAAA 59.066 30.769 6.44 0.00 39.72 2.44
158 159 7.443575 AGCATAAAATGTGTTACCATGCAAAAA 59.556 29.630 6.44 0.00 39.72 1.94
159 160 7.745594 GCATAAAATGTGTTACCATGCAAAAAG 59.254 33.333 0.00 0.00 37.74 2.27
160 161 5.671742 AAATGTGTTACCATGCAAAAAGC 57.328 34.783 0.00 0.00 45.96 3.51
161 162 4.605640 ATGTGTTACCATGCAAAAAGCT 57.394 36.364 0.00 0.00 45.94 3.74
162 163 3.976169 TGTGTTACCATGCAAAAAGCTC 58.024 40.909 0.00 0.00 45.94 4.09
163 164 3.636300 TGTGTTACCATGCAAAAAGCTCT 59.364 39.130 0.00 0.00 45.94 4.09
164 165 4.099266 TGTGTTACCATGCAAAAAGCTCTT 59.901 37.500 0.00 0.00 45.94 2.85
165 166 4.445385 GTGTTACCATGCAAAAAGCTCTTG 59.555 41.667 0.00 4.50 45.94 3.02
166 167 4.099266 TGTTACCATGCAAAAAGCTCTTGT 59.901 37.500 9.54 0.00 45.94 3.16
167 168 3.825143 ACCATGCAAAAAGCTCTTGTT 57.175 38.095 9.54 0.00 45.94 2.83
168 169 3.460103 ACCATGCAAAAAGCTCTTGTTG 58.540 40.909 7.92 7.92 45.94 3.33
174 175 3.719924 CAAAAAGCTCTTGTTGCATGGA 58.280 40.909 0.00 0.00 31.81 3.41
175 176 4.312443 CAAAAAGCTCTTGTTGCATGGAT 58.688 39.130 0.00 0.00 31.81 3.41
176 177 5.472148 CAAAAAGCTCTTGTTGCATGGATA 58.528 37.500 0.00 0.00 31.81 2.59
177 178 4.708726 AAAGCTCTTGTTGCATGGATAC 57.291 40.909 0.00 0.00 0.00 2.24
178 179 3.641434 AGCTCTTGTTGCATGGATACT 57.359 42.857 0.00 0.00 37.61 2.12
179 180 4.760530 AGCTCTTGTTGCATGGATACTA 57.239 40.909 0.00 0.00 37.61 1.82
180 181 4.701765 AGCTCTTGTTGCATGGATACTAG 58.298 43.478 0.00 0.31 37.61 2.57
181 182 4.406972 AGCTCTTGTTGCATGGATACTAGA 59.593 41.667 0.00 4.52 37.61 2.43
182 183 4.749099 GCTCTTGTTGCATGGATACTAGAG 59.251 45.833 22.38 22.38 41.51 2.43
183 184 5.452496 GCTCTTGTTGCATGGATACTAGAGA 60.452 44.000 26.53 15.23 41.28 3.10
184 185 6.154203 TCTTGTTGCATGGATACTAGAGAG 57.846 41.667 0.00 0.00 37.61 3.20
185 186 5.893824 TCTTGTTGCATGGATACTAGAGAGA 59.106 40.000 0.00 0.00 37.61 3.10
186 187 5.521906 TGTTGCATGGATACTAGAGAGAC 57.478 43.478 0.00 0.00 37.61 3.36
187 188 4.956075 TGTTGCATGGATACTAGAGAGACA 59.044 41.667 0.00 0.00 37.61 3.41
188 189 5.422012 TGTTGCATGGATACTAGAGAGACAA 59.578 40.000 0.00 0.00 37.61 3.18
189 190 6.098838 TGTTGCATGGATACTAGAGAGACAAT 59.901 38.462 0.00 0.00 37.61 2.71
190 191 7.287696 TGTTGCATGGATACTAGAGAGACAATA 59.712 37.037 0.00 0.00 37.61 1.90
191 192 7.459795 TGCATGGATACTAGAGAGACAATAG 57.540 40.000 0.00 0.00 37.61 1.73
192 193 6.071672 TGCATGGATACTAGAGAGACAATAGC 60.072 42.308 0.00 0.00 37.61 2.97
193 194 6.152661 GCATGGATACTAGAGAGACAATAGCT 59.847 42.308 0.00 0.00 37.61 3.32
194 195 7.628366 GCATGGATACTAGAGAGACAATAGCTC 60.628 44.444 0.00 0.00 37.61 4.09
195 196 6.842676 TGGATACTAGAGAGACAATAGCTCA 58.157 40.000 0.00 0.00 34.05 4.26
196 197 7.290813 TGGATACTAGAGAGACAATAGCTCAA 58.709 38.462 0.00 0.00 34.05 3.02
197 198 7.947332 TGGATACTAGAGAGACAATAGCTCAAT 59.053 37.037 0.00 0.00 34.05 2.57
198 199 8.802267 GGATACTAGAGAGACAATAGCTCAATT 58.198 37.037 0.00 0.00 34.85 2.32
199 200 9.624697 GATACTAGAGAGACAATAGCTCAATTG 57.375 37.037 7.53 7.53 41.65 2.32
200 201 6.279882 ACTAGAGAGACAATAGCTCAATTGC 58.720 40.000 8.79 3.27 39.93 3.56
201 202 5.356291 AGAGAGACAATAGCTCAATTGCT 57.644 39.130 8.79 7.29 46.11 3.91
202 203 5.358922 AGAGAGACAATAGCTCAATTGCTC 58.641 41.667 17.19 17.19 42.97 4.26
203 204 5.095145 AGAGACAATAGCTCAATTGCTCA 57.905 39.130 22.07 0.00 42.97 4.26
204 205 5.494724 AGAGACAATAGCTCAATTGCTCAA 58.505 37.500 22.07 0.00 42.97 3.02
205 206 5.942236 AGAGACAATAGCTCAATTGCTCAAA 59.058 36.000 22.07 0.00 42.97 2.69
206 207 6.602406 AGAGACAATAGCTCAATTGCTCAAAT 59.398 34.615 22.07 9.74 42.97 2.32
207 208 6.561614 AGACAATAGCTCAATTGCTCAAATG 58.438 36.000 8.79 0.00 42.97 2.32
208 209 5.657474 ACAATAGCTCAATTGCTCAAATGG 58.343 37.500 8.79 0.00 42.97 3.16
209 210 4.931661 ATAGCTCAATTGCTCAAATGGG 57.068 40.909 0.00 0.00 42.97 4.00
210 211 1.206371 AGCTCAATTGCTCAAATGGGC 59.794 47.619 13.16 13.16 45.56 5.36
211 212 1.206371 GCTCAATTGCTCAAATGGGCT 59.794 47.619 13.63 0.00 42.76 5.19
212 213 2.737679 GCTCAATTGCTCAAATGGGCTC 60.738 50.000 13.63 0.00 42.76 4.70
213 214 1.473677 TCAATTGCTCAAATGGGCTCG 59.526 47.619 6.84 0.00 0.00 5.03
214 215 1.473677 CAATTGCTCAAATGGGCTCGA 59.526 47.619 6.84 0.00 0.00 4.04
215 216 2.062971 ATTGCTCAAATGGGCTCGAT 57.937 45.000 6.84 0.00 0.00 3.59
216 217 2.708216 TTGCTCAAATGGGCTCGATA 57.292 45.000 6.84 0.00 0.00 2.92
217 218 1.953559 TGCTCAAATGGGCTCGATAC 58.046 50.000 6.84 0.00 0.00 2.24
218 219 1.209261 TGCTCAAATGGGCTCGATACA 59.791 47.619 6.84 0.00 0.00 2.29
219 220 1.599542 GCTCAAATGGGCTCGATACAC 59.400 52.381 0.00 0.00 0.00 2.90
220 221 2.743183 GCTCAAATGGGCTCGATACACT 60.743 50.000 0.00 0.00 0.00 3.55
221 222 3.535561 CTCAAATGGGCTCGATACACTT 58.464 45.455 0.00 0.00 0.00 3.16
222 223 3.270027 TCAAATGGGCTCGATACACTTG 58.730 45.455 0.00 0.00 0.00 3.16
223 224 3.009723 CAAATGGGCTCGATACACTTGT 58.990 45.455 0.00 0.00 0.00 3.16
224 225 2.604046 ATGGGCTCGATACACTTGTC 57.396 50.000 0.00 0.00 0.00 3.18
225 226 0.535335 TGGGCTCGATACACTTGTCC 59.465 55.000 0.00 0.00 0.00 4.02
226 227 0.535335 GGGCTCGATACACTTGTCCA 59.465 55.000 0.00 0.00 0.00 4.02
227 228 1.641577 GGCTCGATACACTTGTCCAC 58.358 55.000 0.00 0.00 0.00 4.02
228 229 1.641577 GCTCGATACACTTGTCCACC 58.358 55.000 0.00 0.00 0.00 4.61
229 230 1.067142 GCTCGATACACTTGTCCACCA 60.067 52.381 0.00 0.00 0.00 4.17
230 231 2.611971 GCTCGATACACTTGTCCACCAA 60.612 50.000 0.00 0.00 0.00 3.67
231 232 2.993899 CTCGATACACTTGTCCACCAAC 59.006 50.000 0.00 0.00 0.00 3.77
232 233 2.073816 CGATACACTTGTCCACCAACC 58.926 52.381 0.00 0.00 0.00 3.77
233 234 2.289444 CGATACACTTGTCCACCAACCT 60.289 50.000 0.00 0.00 0.00 3.50
234 235 3.056393 CGATACACTTGTCCACCAACCTA 60.056 47.826 0.00 0.00 0.00 3.08
235 236 4.382685 CGATACACTTGTCCACCAACCTAT 60.383 45.833 0.00 0.00 0.00 2.57
236 237 3.140325 ACACTTGTCCACCAACCTATG 57.860 47.619 0.00 0.00 0.00 2.23
237 238 1.812571 CACTTGTCCACCAACCTATGC 59.187 52.381 0.00 0.00 0.00 3.14
238 239 1.086696 CTTGTCCACCAACCTATGCG 58.913 55.000 0.00 0.00 0.00 4.73
239 240 0.687920 TTGTCCACCAACCTATGCGA 59.312 50.000 0.00 0.00 0.00 5.10
240 241 0.249120 TGTCCACCAACCTATGCGAG 59.751 55.000 0.00 0.00 0.00 5.03
241 242 0.535335 GTCCACCAACCTATGCGAGA 59.465 55.000 0.00 0.00 0.00 4.04
242 243 1.066430 GTCCACCAACCTATGCGAGAA 60.066 52.381 0.00 0.00 0.00 2.87
243 244 1.626321 TCCACCAACCTATGCGAGAAA 59.374 47.619 0.00 0.00 0.00 2.52
244 245 1.737793 CCACCAACCTATGCGAGAAAC 59.262 52.381 0.00 0.00 0.00 2.78
245 246 2.422597 CACCAACCTATGCGAGAAACA 58.577 47.619 0.00 0.00 0.00 2.83
246 247 2.811431 CACCAACCTATGCGAGAAACAA 59.189 45.455 0.00 0.00 0.00 2.83
247 248 3.440173 CACCAACCTATGCGAGAAACAAT 59.560 43.478 0.00 0.00 0.00 2.71
248 249 3.440173 ACCAACCTATGCGAGAAACAATG 59.560 43.478 0.00 0.00 0.00 2.82
249 250 3.429085 CAACCTATGCGAGAAACAATGC 58.571 45.455 0.00 0.00 0.00 3.56
250 251 2.017049 ACCTATGCGAGAAACAATGCC 58.983 47.619 0.00 0.00 0.00 4.40
251 252 1.003545 CCTATGCGAGAAACAATGCCG 60.004 52.381 0.00 0.00 0.00 5.69
252 253 1.665679 CTATGCGAGAAACAATGCCGT 59.334 47.619 0.00 0.00 0.00 5.68
253 254 0.447801 ATGCGAGAAACAATGCCGTC 59.552 50.000 0.00 0.00 0.00 4.79
254 255 0.602638 TGCGAGAAACAATGCCGTCT 60.603 50.000 0.00 0.00 0.00 4.18
255 256 0.517316 GCGAGAAACAATGCCGTCTT 59.483 50.000 0.00 0.00 0.00 3.01
256 257 1.464189 GCGAGAAACAATGCCGTCTTC 60.464 52.381 0.00 0.00 0.00 2.87
257 258 1.798223 CGAGAAACAATGCCGTCTTCA 59.202 47.619 0.00 0.00 0.00 3.02
258 259 2.223144 CGAGAAACAATGCCGTCTTCAA 59.777 45.455 0.00 0.00 0.00 2.69
259 260 3.120199 CGAGAAACAATGCCGTCTTCAAT 60.120 43.478 0.00 0.00 0.00 2.57
260 261 4.406943 GAGAAACAATGCCGTCTTCAATC 58.593 43.478 0.00 0.00 0.00 2.67
261 262 3.191371 AGAAACAATGCCGTCTTCAATCC 59.809 43.478 0.00 0.00 0.00 3.01
262 263 1.463674 ACAATGCCGTCTTCAATCCC 58.536 50.000 0.00 0.00 0.00 3.85
263 264 1.271871 ACAATGCCGTCTTCAATCCCA 60.272 47.619 0.00 0.00 0.00 4.37
264 265 1.818060 CAATGCCGTCTTCAATCCCAA 59.182 47.619 0.00 0.00 0.00 4.12
325 326 3.779850 TATAGACCTCGCCCGCCGT 62.780 63.158 0.00 0.00 38.35 5.68
382 384 2.577059 GTGGCGAGGGAATCACGA 59.423 61.111 0.00 0.00 0.00 4.35
389 391 2.482142 GCGAGGGAATCACGAAGAGAAT 60.482 50.000 0.00 0.00 0.00 2.40
391 393 3.462021 GAGGGAATCACGAAGAGAATGG 58.538 50.000 0.00 0.00 0.00 3.16
393 395 2.170607 GGGAATCACGAAGAGAATGGGA 59.829 50.000 0.00 0.00 0.00 4.37
394 396 3.198872 GGAATCACGAAGAGAATGGGAC 58.801 50.000 0.00 0.00 0.00 4.46
399 401 1.002366 CGAAGAGAATGGGACGCTTG 58.998 55.000 0.00 0.00 0.00 4.01
417 419 0.178843 TGGGGCTAGGGTTTCTCCTT 60.179 55.000 0.00 0.00 38.30 3.36
458 460 5.181433 GTGAAGTACTTTTAGGGCTCCTTTG 59.819 44.000 10.02 0.00 34.61 2.77
545 547 8.688747 AGTCCTTTGATTCATAGAATTGGATC 57.311 34.615 5.77 0.00 32.97 3.36
606 609 9.872684 ACATTTGATAGGAAATCTAACATCCAT 57.127 29.630 0.00 0.00 35.62 3.41
613 616 7.410120 AGGAAATCTAACATCCATTTCAACC 57.590 36.000 6.09 0.00 37.98 3.77
619 622 9.710900 AATCTAACATCCATTTCAACCTTTTTC 57.289 29.630 0.00 0.00 0.00 2.29
626 629 9.059260 CATCCATTTCAACCTTTTTCTTGATTT 57.941 29.630 0.00 0.00 0.00 2.17
651 654 5.793026 TTGTTTTTCTTGTGCCATCAAAC 57.207 34.783 0.00 0.00 0.00 2.93
653 656 4.629200 TGTTTTTCTTGTGCCATCAAACAC 59.371 37.500 0.00 0.00 37.31 3.32
660 663 1.956477 GTGCCATCAAACACTCCTTGT 59.044 47.619 0.00 0.00 41.74 3.16
676 679 8.893727 ACACTCCTTGTTAATCATATTGCTAAC 58.106 33.333 0.00 0.00 33.09 2.34
677 680 9.113838 CACTCCTTGTTAATCATATTGCTAACT 57.886 33.333 0.00 0.00 0.00 2.24
678 681 9.331282 ACTCCTTGTTAATCATATTGCTAACTC 57.669 33.333 0.00 0.00 0.00 3.01
704 707 3.093814 AGATTCAAATGAGCATGCCACA 58.906 40.909 15.66 15.64 0.00 4.17
711 714 5.047164 TCAAATGAGCATGCCACACTAATTT 60.047 36.000 15.66 9.52 0.00 1.82
721 724 9.150348 GCATGCCACACTAATTTTATACTTTTT 57.850 29.630 6.36 0.00 0.00 1.94
746 750 8.263940 TCTATTCGTAGTTTTCAAAATCCTGG 57.736 34.615 0.00 0.00 0.00 4.45
747 751 5.699097 TTCGTAGTTTTCAAAATCCTGGG 57.301 39.130 0.00 0.00 0.00 4.45
854 861 0.252197 GCAACCGATACCCACCTCTT 59.748 55.000 0.00 0.00 0.00 2.85
856 863 1.831736 CAACCGATACCCACCTCTTCT 59.168 52.381 0.00 0.00 0.00 2.85
857 864 1.486211 ACCGATACCCACCTCTTCTG 58.514 55.000 0.00 0.00 0.00 3.02
858 865 0.105039 CCGATACCCACCTCTTCTGC 59.895 60.000 0.00 0.00 0.00 4.26
859 866 0.249073 CGATACCCACCTCTTCTGCG 60.249 60.000 0.00 0.00 0.00 5.18
1016 1024 1.098050 GCCATGGCTACCTTCACTTG 58.902 55.000 29.98 0.00 38.26 3.16
1350 1358 1.137697 ACCCGGAGAACACCTTCTTT 58.862 50.000 0.73 0.00 36.82 2.52
1773 2084 3.510388 TTATGAGAGGTCACTGCTTCG 57.490 47.619 0.00 0.00 34.75 3.79
1836 2230 4.497291 AAAGTTTAGTCAGGTGTGGACA 57.503 40.909 0.00 0.00 37.74 4.02
1837 2231 4.497291 AAGTTTAGTCAGGTGTGGACAA 57.503 40.909 0.00 0.00 37.74 3.18
1914 2308 7.598759 TTAACTTCAGAGACCTAAGTTGACT 57.401 36.000 9.34 0.00 42.01 3.41
2712 3123 6.198650 TGTAAGAAGGTCATGATGCAATTG 57.801 37.500 0.00 0.00 0.00 2.32
2758 3169 6.072673 GCCCTTAAAATATGCTATTAGCGTGT 60.073 38.462 18.61 10.54 46.26 4.49
2836 3247 3.313526 AGGCATTGCTCAAAACGCTATAG 59.686 43.478 8.82 0.00 0.00 1.31
2851 3262 2.847133 GCTATAGCGTGCTATTAGCGAC 59.153 50.000 18.62 9.06 46.26 5.19
2997 3416 7.037586 AGGTGGAGATGACTTTGATAAGGTTTA 60.038 37.037 0.00 0.00 35.61 2.01
2998 3417 7.065923 GGTGGAGATGACTTTGATAAGGTTTAC 59.934 40.741 0.00 0.00 35.61 2.01
3076 3495 5.412594 AGTTCATCATGCACTATTTTGACGT 59.587 36.000 0.00 0.00 0.00 4.34
3399 4033 5.602628 CTGGGTCTTTTATAGGTGTAGAGC 58.397 45.833 0.00 0.00 33.75 4.09
3452 4086 0.179048 CTGGCCGGCTGAACATCATA 60.179 55.000 28.56 0.00 0.00 2.15
3499 4133 1.738830 TTTCATCGTTCGTCCCGCC 60.739 57.895 0.00 0.00 0.00 6.13
3551 4185 4.922026 ACCACCCACGTTCGCCAC 62.922 66.667 0.00 0.00 0.00 5.01
3652 4287 2.631012 GATCCCCTCCAATGGCGCTT 62.631 60.000 7.64 0.00 0.00 4.68
3670 4305 3.997021 CGCTTAAATTCTCTCCACACTGT 59.003 43.478 0.00 0.00 0.00 3.55
3706 4341 0.253894 CAGTGCAGATCCATCCCACA 59.746 55.000 0.00 0.00 34.15 4.17
3714 4349 3.716195 CCATCCCACAGCCGACCA 61.716 66.667 0.00 0.00 0.00 4.02
3719 4354 3.953775 CCACAGCCGACCACCCTT 61.954 66.667 0.00 0.00 0.00 3.95
4123 4767 1.602323 TGGTTGTGGATGCCGGAAC 60.602 57.895 5.05 0.00 0.00 3.62
4248 4919 2.825836 CGGGAGCTGCAACCCATC 60.826 66.667 26.05 5.88 45.83 3.51
4249 4920 2.356278 GGGAGCTGCAACCCATCA 59.644 61.111 23.39 0.00 44.96 3.07
4250 4921 1.076485 GGGAGCTGCAACCCATCAT 60.076 57.895 23.39 0.00 44.96 2.45
4251 4922 1.389609 GGGAGCTGCAACCCATCATG 61.390 60.000 23.39 0.00 44.96 3.07
4252 4923 1.389609 GGAGCTGCAACCCATCATGG 61.390 60.000 0.00 0.00 37.25 3.66
4253 4924 2.012902 GAGCTGCAACCCATCATGGC 62.013 60.000 0.00 0.00 35.79 4.40
4254 4925 3.085119 GCTGCAACCCATCATGGCC 62.085 63.158 0.00 0.00 35.79 5.36
4913 5606 5.643379 TGTTGGAATGCCTAATTTGAGAC 57.357 39.130 0.00 0.00 34.31 3.36
4932 5625 4.954118 TGTGAGCCCTCCGGTGGT 62.954 66.667 20.78 7.27 0.00 4.16
4992 5769 3.710722 CTCCGTGGCAGGGCTTCT 61.711 66.667 21.11 0.00 0.00 2.85
5008 5785 3.648982 CTGTGAAGCGCGGTTGCA 61.649 61.111 30.19 23.45 42.97 4.08
5071 5848 4.075793 CACGGGAGGGAGGAGGGA 62.076 72.222 0.00 0.00 32.31 4.20
5072 5849 3.756783 ACGGGAGGGAGGAGGGAG 61.757 72.222 0.00 0.00 0.00 4.30
5073 5850 3.430497 CGGGAGGGAGGAGGGAGA 61.430 72.222 0.00 0.00 0.00 3.71
5136 5920 1.335872 CGTCCAATCAAAGGGTTGCAC 60.336 52.381 0.00 0.00 34.50 4.57
5217 6659 6.561737 TGGTTTTGTGCAATACGAAGATAA 57.438 33.333 0.00 0.00 34.23 1.75
5220 6662 8.085296 TGGTTTTGTGCAATACGAAGATAAAAT 58.915 29.630 0.00 0.00 34.23 1.82
5293 6735 6.936335 TCTCTCTTCAAACATCTGCAACATTA 59.064 34.615 0.00 0.00 0.00 1.90
5300 6742 4.668576 ACATCTGCAACATTACTTCACG 57.331 40.909 0.00 0.00 0.00 4.35
5382 6827 5.841957 AGCAACAAGAGAGTCAATTTGTT 57.158 34.783 11.55 11.55 42.61 2.83
5383 6828 5.825507 AGCAACAAGAGAGTCAATTTGTTC 58.174 37.500 13.44 10.14 40.62 3.18
5576 7021 2.430546 ACTCAGTCACTCTTGCTTCG 57.569 50.000 0.00 0.00 0.00 3.79
5720 7167 8.478877 CAGGTGGACTCAGTTTCTAATAGTATT 58.521 37.037 0.17 0.17 0.00 1.89
5747 7194 7.496346 TGATAACTCTCCACCAATTTCTAGT 57.504 36.000 0.00 0.00 0.00 2.57
5748 7195 8.603898 TGATAACTCTCCACCAATTTCTAGTA 57.396 34.615 0.00 0.00 0.00 1.82
5749 7196 9.042450 TGATAACTCTCCACCAATTTCTAGTAA 57.958 33.333 0.00 0.00 0.00 2.24
5751 7198 9.838339 ATAACTCTCCACCAATTTCTAGTAATG 57.162 33.333 0.00 0.00 0.00 1.90
5752 7199 7.259088 ACTCTCCACCAATTTCTAGTAATGT 57.741 36.000 0.00 0.00 0.00 2.71
5753 7200 8.375493 ACTCTCCACCAATTTCTAGTAATGTA 57.625 34.615 0.00 0.00 0.00 2.29
5754 7201 8.822805 ACTCTCCACCAATTTCTAGTAATGTAA 58.177 33.333 0.00 0.00 0.00 2.41
6062 7509 2.086610 AACACATTGAGGCAACCCTT 57.913 45.000 0.00 0.00 43.12 3.95
6337 7785 1.165907 TCCCTGCAGTGCAAGAAACG 61.166 55.000 20.22 6.02 38.41 3.60
6535 7983 2.578021 AGAAATGCAGGGAAAGGCTCTA 59.422 45.455 0.00 0.00 0.00 2.43
6540 7988 2.435805 TGCAGGGAAAGGCTCTATACAG 59.564 50.000 0.00 0.00 0.00 2.74
6618 8066 1.829456 GGGCTGCCCTTTTTGTTGT 59.171 52.632 30.42 0.00 41.34 3.32
6703 8152 6.607019 TGTTTCCTTAAAGTACCAATGGTCT 58.393 36.000 8.82 3.17 37.09 3.85
6731 8180 4.404073 AGTTACATCTCAAGTAGCTCCCAG 59.596 45.833 0.00 0.00 28.56 4.45
6757 8206 3.550820 TGTACAGTGCAAGACCACATTT 58.449 40.909 0.00 0.00 38.18 2.32
6758 8207 4.709250 TGTACAGTGCAAGACCACATTTA 58.291 39.130 0.00 0.00 38.18 1.40
7291 8740 7.858583 ACTCTCGTTGTTTTGGTAATTAGTTC 58.141 34.615 0.00 0.00 0.00 3.01
7432 9181 8.579850 TCCAATCTGTTCTGTTGCTATTTATT 57.420 30.769 0.00 0.00 0.00 1.40
7589 9496 6.742559 TCCTTGGATAGTAAATGGGTAGTC 57.257 41.667 0.00 0.00 0.00 2.59
7787 9696 2.994578 GGTAGAAGAAGCCGACAAGTTC 59.005 50.000 0.00 0.00 0.00 3.01
7969 9878 0.037326 GCTGGTGGATCGACACAGAA 60.037 55.000 21.78 2.54 43.08 3.02
8170 10079 7.067372 CACAGATAGCAATTAAAGGATGGTCAA 59.933 37.037 0.00 0.00 0.00 3.18
8171 10080 7.781693 ACAGATAGCAATTAAAGGATGGTCAAT 59.218 33.333 0.00 0.00 0.00 2.57
8172 10081 8.080417 CAGATAGCAATTAAAGGATGGTCAATG 58.920 37.037 0.00 0.00 0.00 2.82
8173 10082 5.603170 AGCAATTAAAGGATGGTCAATGG 57.397 39.130 0.00 0.00 0.00 3.16
8174 10083 5.271598 AGCAATTAAAGGATGGTCAATGGA 58.728 37.500 0.00 0.00 0.00 3.41
8175 10084 5.901276 AGCAATTAAAGGATGGTCAATGGAT 59.099 36.000 0.00 0.00 0.00 3.41
8176 10085 6.041296 AGCAATTAAAGGATGGTCAATGGATC 59.959 38.462 0.00 0.00 0.00 3.36
8177 10086 6.441274 CAATTAAAGGATGGTCAATGGATCG 58.559 40.000 0.00 0.00 0.00 3.69
8178 10087 3.652057 AAAGGATGGTCAATGGATCGT 57.348 42.857 0.00 0.00 0.00 3.73
8179 10088 2.627515 AGGATGGTCAATGGATCGTG 57.372 50.000 0.00 0.00 0.00 4.35
8180 10089 1.141657 AGGATGGTCAATGGATCGTGG 59.858 52.381 0.00 0.00 0.00 4.94
8181 10090 1.134098 GGATGGTCAATGGATCGTGGT 60.134 52.381 0.00 0.00 0.00 4.16
8182 10091 1.942657 GATGGTCAATGGATCGTGGTG 59.057 52.381 0.00 0.00 0.00 4.17
8183 10092 0.980423 TGGTCAATGGATCGTGGTGA 59.020 50.000 0.00 0.00 0.00 4.02
8184 10093 1.066215 TGGTCAATGGATCGTGGTGAG 60.066 52.381 0.00 0.00 0.00 3.51
8185 10094 1.066143 GGTCAATGGATCGTGGTGAGT 60.066 52.381 0.00 0.00 0.00 3.41
8186 10095 2.002586 GTCAATGGATCGTGGTGAGTG 58.997 52.381 0.00 0.00 0.00 3.51
8187 10096 1.899142 TCAATGGATCGTGGTGAGTGA 59.101 47.619 0.00 0.00 0.00 3.41
8188 10097 2.501316 TCAATGGATCGTGGTGAGTGAT 59.499 45.455 0.00 0.00 0.00 3.06
8189 10098 3.704061 TCAATGGATCGTGGTGAGTGATA 59.296 43.478 0.00 0.00 0.00 2.15
8190 10099 3.735237 ATGGATCGTGGTGAGTGATAC 57.265 47.619 0.00 0.00 0.00 2.24
8191 10100 2.452505 TGGATCGTGGTGAGTGATACA 58.547 47.619 0.00 0.00 30.61 2.29
8192 10101 3.031013 TGGATCGTGGTGAGTGATACAT 58.969 45.455 0.00 0.00 28.10 2.29
8193 10102 4.211920 TGGATCGTGGTGAGTGATACATA 58.788 43.478 0.00 0.00 28.10 2.29
8194 10103 4.278419 TGGATCGTGGTGAGTGATACATAG 59.722 45.833 0.00 0.00 28.10 2.23
8195 10104 4.519350 GGATCGTGGTGAGTGATACATAGA 59.481 45.833 0.00 0.00 0.00 1.98
8196 10105 4.895224 TCGTGGTGAGTGATACATAGAC 57.105 45.455 0.00 0.00 0.00 2.59
8197 10106 3.630769 TCGTGGTGAGTGATACATAGACC 59.369 47.826 0.00 0.00 0.00 3.85
8198 10107 3.243434 CGTGGTGAGTGATACATAGACCC 60.243 52.174 0.00 0.00 0.00 4.46
8199 10108 3.961408 GTGGTGAGTGATACATAGACCCT 59.039 47.826 0.00 0.00 0.00 4.34
8200 10109 3.960755 TGGTGAGTGATACATAGACCCTG 59.039 47.826 0.00 0.00 0.00 4.45
8271 10211 3.562182 TCGGCTCCATGTATCTACAAGA 58.438 45.455 0.00 0.00 39.99 3.02
8408 10348 6.984474 TCGAAACAGTAGCATATTCCCTAAAG 59.016 38.462 0.00 0.00 0.00 1.85
8692 10633 7.868922 TGAAACACATCAAGGAATCTGAAATTG 59.131 33.333 0.00 0.00 0.00 2.32
8802 10743 5.418310 AGTACATGCGCCATACATAAAAC 57.582 39.130 4.18 0.00 0.00 2.43
8805 10746 5.261209 ACATGCGCCATACATAAAACAAT 57.739 34.783 4.18 0.00 0.00 2.71
8905 10848 6.072230 GCTTTTCTTCAGCCAGTATTCTTCTT 60.072 38.462 0.00 0.00 0.00 2.52
8927 10872 8.751302 TCTTTTGTTTGGTTTGTTACTTCTTC 57.249 30.769 0.00 0.00 0.00 2.87
8985 10930 0.257039 CTTCACATCCCCTCCCCTTG 59.743 60.000 0.00 0.00 0.00 3.61
9120 11065 4.334759 AGATTCATGCATGCACTACAAGAC 59.665 41.667 25.37 9.83 0.00 3.01
9122 11067 3.004862 TCATGCATGCACTACAAGACAG 58.995 45.455 25.37 3.13 0.00 3.51
9131 11076 5.237815 TGCACTACAAGACAGAACTAATGG 58.762 41.667 0.00 0.00 0.00 3.16
9134 11079 5.877012 CACTACAAGACAGAACTAATGGCAT 59.123 40.000 0.00 0.00 0.00 4.40
9135 11080 7.041721 CACTACAAGACAGAACTAATGGCATA 58.958 38.462 0.00 0.00 0.00 3.14
9136 11081 7.549134 CACTACAAGACAGAACTAATGGCATAA 59.451 37.037 0.00 0.00 0.00 1.90
9137 11082 8.267894 ACTACAAGACAGAACTAATGGCATAAT 58.732 33.333 0.00 0.00 0.00 1.28
9140 11085 8.462016 ACAAGACAGAACTAATGGCATAATTTC 58.538 33.333 0.00 3.65 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.094506 TGTGAATCTTCCTCAACATTCTTGATG 60.095 37.037 0.00 0.00 41.71 3.07
1 2 6.944290 TGTGAATCTTCCTCAACATTCTTGAT 59.056 34.615 0.00 0.00 0.00 2.57
2 3 6.298361 TGTGAATCTTCCTCAACATTCTTGA 58.702 36.000 0.00 0.00 0.00 3.02
4 5 7.587037 TTTGTGAATCTTCCTCAACATTCTT 57.413 32.000 0.00 0.00 0.00 2.52
5 6 7.587037 TTTTGTGAATCTTCCTCAACATTCT 57.413 32.000 0.00 0.00 0.00 2.40
6 7 8.706035 CAATTTTGTGAATCTTCCTCAACATTC 58.294 33.333 0.00 0.00 0.00 2.67
7 8 7.172019 GCAATTTTGTGAATCTTCCTCAACATT 59.828 33.333 0.00 0.00 0.00 2.71
8 9 6.647895 GCAATTTTGTGAATCTTCCTCAACAT 59.352 34.615 0.00 0.00 0.00 2.71
9 10 5.984926 GCAATTTTGTGAATCTTCCTCAACA 59.015 36.000 0.00 0.00 0.00 3.33
10 11 5.984926 TGCAATTTTGTGAATCTTCCTCAAC 59.015 36.000 0.00 0.00 0.00 3.18
11 12 6.159299 TGCAATTTTGTGAATCTTCCTCAA 57.841 33.333 0.00 0.00 0.00 3.02
12 13 5.787953 TGCAATTTTGTGAATCTTCCTCA 57.212 34.783 0.00 0.00 0.00 3.86
13 14 6.647895 ACATTGCAATTTTGTGAATCTTCCTC 59.352 34.615 9.83 0.00 0.00 3.71
14 15 6.527423 ACATTGCAATTTTGTGAATCTTCCT 58.473 32.000 9.83 0.00 0.00 3.36
15 16 6.790285 ACATTGCAATTTTGTGAATCTTCC 57.210 33.333 9.83 0.00 0.00 3.46
16 17 9.801714 CTTTACATTGCAATTTTGTGAATCTTC 57.198 29.630 9.83 0.00 0.00 2.87
17 18 8.284693 GCTTTACATTGCAATTTTGTGAATCTT 58.715 29.630 9.83 0.00 0.00 2.40
18 19 7.441760 TGCTTTACATTGCAATTTTGTGAATCT 59.558 29.630 9.83 0.00 36.15 2.40
19 20 7.574496 TGCTTTACATTGCAATTTTGTGAATC 58.426 30.769 9.83 6.19 36.15 2.52
20 21 7.493743 TGCTTTACATTGCAATTTTGTGAAT 57.506 28.000 9.83 0.00 36.15 2.57
21 22 6.915544 TGCTTTACATTGCAATTTTGTGAA 57.084 29.167 9.83 8.78 36.15 3.18
22 23 6.915544 TTGCTTTACATTGCAATTTTGTGA 57.084 29.167 9.83 0.15 43.17 3.58
23 24 9.320406 CTATTTGCTTTACATTGCAATTTTGTG 57.680 29.630 9.83 1.85 46.55 3.33
24 25 9.270640 TCTATTTGCTTTACATTGCAATTTTGT 57.729 25.926 9.83 9.36 46.55 2.83
27 28 9.656040 TGATCTATTTGCTTTACATTGCAATTT 57.344 25.926 9.83 6.22 46.55 1.82
28 29 9.656040 TTGATCTATTTGCTTTACATTGCAATT 57.344 25.926 9.83 4.36 46.55 2.32
29 30 9.826574 ATTGATCTATTTGCTTTACATTGCAAT 57.173 25.926 5.99 5.99 46.55 3.56
31 32 9.955208 CTATTGATCTATTTGCTTTACATTGCA 57.045 29.630 0.00 0.00 37.42 4.08
32 33 8.909671 GCTATTGATCTATTTGCTTTACATTGC 58.090 33.333 0.00 0.00 0.00 3.56
40 41 9.228949 CCAAGATAGCTATTGATCTATTTGCTT 57.771 33.333 7.87 0.00 32.03 3.91
41 42 7.336427 GCCAAGATAGCTATTGATCTATTTGCT 59.664 37.037 7.87 16.48 32.03 3.91
42 43 7.120285 TGCCAAGATAGCTATTGATCTATTTGC 59.880 37.037 7.87 4.45 32.03 3.68
43 44 8.449397 GTGCCAAGATAGCTATTGATCTATTTG 58.551 37.037 7.87 0.00 32.03 2.32
44 45 8.159447 TGTGCCAAGATAGCTATTGATCTATTT 58.841 33.333 7.87 0.00 32.03 1.40
45 46 7.683578 TGTGCCAAGATAGCTATTGATCTATT 58.316 34.615 7.87 0.00 32.03 1.73
46 47 7.250032 TGTGCCAAGATAGCTATTGATCTAT 57.750 36.000 7.87 0.00 32.03 1.98
47 48 6.670695 TGTGCCAAGATAGCTATTGATCTA 57.329 37.500 7.87 0.00 32.03 1.98
48 49 5.557576 TGTGCCAAGATAGCTATTGATCT 57.442 39.130 7.87 0.00 33.75 2.75
49 50 6.624352 TTTGTGCCAAGATAGCTATTGATC 57.376 37.500 7.87 0.00 0.00 2.92
50 51 5.009410 GCTTTGTGCCAAGATAGCTATTGAT 59.991 40.000 7.87 0.00 35.15 2.57
51 52 4.336433 GCTTTGTGCCAAGATAGCTATTGA 59.664 41.667 7.87 0.00 35.15 2.57
52 53 4.096833 TGCTTTGTGCCAAGATAGCTATTG 59.903 41.667 7.87 3.86 42.00 1.90
53 54 4.272489 TGCTTTGTGCCAAGATAGCTATT 58.728 39.130 7.87 0.00 42.00 1.73
54 55 3.889815 TGCTTTGTGCCAAGATAGCTAT 58.110 40.909 5.76 5.76 42.00 2.97
55 56 3.348647 TGCTTTGTGCCAAGATAGCTA 57.651 42.857 0.00 0.00 42.00 3.32
56 57 2.205022 TGCTTTGTGCCAAGATAGCT 57.795 45.000 0.00 0.00 42.00 3.32
57 58 2.989166 GTTTGCTTTGTGCCAAGATAGC 59.011 45.455 0.00 0.00 42.00 2.97
58 59 3.983344 GTGTTTGCTTTGTGCCAAGATAG 59.017 43.478 0.00 0.00 42.00 2.08
59 60 3.382865 TGTGTTTGCTTTGTGCCAAGATA 59.617 39.130 0.00 0.00 42.00 1.98
60 61 2.168106 TGTGTTTGCTTTGTGCCAAGAT 59.832 40.909 0.00 0.00 42.00 2.40
61 62 1.547820 TGTGTTTGCTTTGTGCCAAGA 59.452 42.857 0.00 0.00 42.00 3.02
62 63 1.660104 GTGTGTTTGCTTTGTGCCAAG 59.340 47.619 0.00 0.00 42.00 3.61
63 64 1.001293 TGTGTGTTTGCTTTGTGCCAA 59.999 42.857 0.00 0.00 42.00 4.52
64 65 0.605083 TGTGTGTTTGCTTTGTGCCA 59.395 45.000 0.00 0.00 42.00 4.92
65 66 0.998669 GTGTGTGTTTGCTTTGTGCC 59.001 50.000 0.00 0.00 42.00 5.01
66 67 1.389784 GTGTGTGTGTTTGCTTTGTGC 59.610 47.619 0.00 0.00 43.25 4.57
67 68 2.408032 GTGTGTGTGTGTTTGCTTTGTG 59.592 45.455 0.00 0.00 0.00 3.33
68 69 2.035193 TGTGTGTGTGTGTTTGCTTTGT 59.965 40.909 0.00 0.00 0.00 2.83
69 70 2.408032 GTGTGTGTGTGTGTTTGCTTTG 59.592 45.455 0.00 0.00 0.00 2.77
70 71 2.035193 TGTGTGTGTGTGTGTTTGCTTT 59.965 40.909 0.00 0.00 0.00 3.51
71 72 1.611006 TGTGTGTGTGTGTGTTTGCTT 59.389 42.857 0.00 0.00 0.00 3.91
72 73 1.068610 GTGTGTGTGTGTGTGTTTGCT 60.069 47.619 0.00 0.00 0.00 3.91
73 74 1.335415 TGTGTGTGTGTGTGTGTTTGC 60.335 47.619 0.00 0.00 0.00 3.68
74 75 2.287248 TGTGTGTGTGTGTGTGTGTTTG 60.287 45.455 0.00 0.00 0.00 2.93
75 76 1.950216 TGTGTGTGTGTGTGTGTGTTT 59.050 42.857 0.00 0.00 0.00 2.83
76 77 1.265635 GTGTGTGTGTGTGTGTGTGTT 59.734 47.619 0.00 0.00 0.00 3.32
77 78 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
78 79 0.179227 CGTGTGTGTGTGTGTGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
79 80 1.295357 CCGTGTGTGTGTGTGTGTGT 61.295 55.000 0.00 0.00 0.00 3.72
80 81 1.016653 TCCGTGTGTGTGTGTGTGTG 61.017 55.000 0.00 0.00 0.00 3.82
81 82 0.107897 ATCCGTGTGTGTGTGTGTGT 60.108 50.000 0.00 0.00 0.00 3.72
82 83 1.792367 CTATCCGTGTGTGTGTGTGTG 59.208 52.381 0.00 0.00 0.00 3.82
83 84 1.684450 TCTATCCGTGTGTGTGTGTGT 59.316 47.619 0.00 0.00 0.00 3.72
84 85 2.432206 TCTATCCGTGTGTGTGTGTG 57.568 50.000 0.00 0.00 0.00 3.82
85 86 2.560981 TGATCTATCCGTGTGTGTGTGT 59.439 45.455 0.00 0.00 0.00 3.72
86 87 3.182182 CTGATCTATCCGTGTGTGTGTG 58.818 50.000 0.00 0.00 0.00 3.82
87 88 2.826128 ACTGATCTATCCGTGTGTGTGT 59.174 45.455 0.00 0.00 0.00 3.72
88 89 3.182182 CACTGATCTATCCGTGTGTGTG 58.818 50.000 6.41 0.00 37.29 3.82
89 90 2.166459 CCACTGATCTATCCGTGTGTGT 59.834 50.000 11.87 0.00 39.45 3.72
90 91 2.481969 CCCACTGATCTATCCGTGTGTG 60.482 54.545 11.87 0.00 39.45 3.82
91 92 1.757118 CCCACTGATCTATCCGTGTGT 59.243 52.381 11.87 0.00 39.45 3.72
92 93 2.031870 TCCCACTGATCTATCCGTGTG 58.968 52.381 11.87 3.13 39.45 3.82
93 94 2.454336 TCCCACTGATCTATCCGTGT 57.546 50.000 11.87 0.00 39.45 4.49
94 95 3.584406 GATCCCACTGATCTATCCGTG 57.416 52.381 7.35 7.35 45.46 4.94
103 104 0.392998 GTTGTGCGGATCCCACTGAT 60.393 55.000 24.81 0.00 36.01 2.90
104 105 1.003839 GTTGTGCGGATCCCACTGA 60.004 57.895 24.81 15.41 34.38 3.41
105 106 2.040544 GGTTGTGCGGATCCCACTG 61.041 63.158 24.81 7.32 34.38 3.66
106 107 2.063015 TTGGTTGTGCGGATCCCACT 62.063 55.000 24.81 0.00 34.38 4.00
107 108 1.586154 CTTGGTTGTGCGGATCCCAC 61.586 60.000 20.48 20.48 0.00 4.61
108 109 1.303236 CTTGGTTGTGCGGATCCCA 60.303 57.895 6.06 2.18 0.00 4.37
109 110 2.046285 CCTTGGTTGTGCGGATCCC 61.046 63.158 6.06 0.00 0.00 3.85
110 111 0.608035 TTCCTTGGTTGTGCGGATCC 60.608 55.000 0.00 0.00 0.00 3.36
111 112 0.521735 GTTCCTTGGTTGTGCGGATC 59.478 55.000 0.00 0.00 0.00 3.36
112 113 0.179004 TGTTCCTTGGTTGTGCGGAT 60.179 50.000 0.00 0.00 0.00 4.18
113 114 0.394488 TTGTTCCTTGGTTGTGCGGA 60.394 50.000 0.00 0.00 0.00 5.54
114 115 0.030638 CTTGTTCCTTGGTTGTGCGG 59.969 55.000 0.00 0.00 0.00 5.69
115 116 0.594796 GCTTGTTCCTTGGTTGTGCG 60.595 55.000 0.00 0.00 0.00 5.34
116 117 0.459489 TGCTTGTTCCTTGGTTGTGC 59.541 50.000 0.00 0.00 0.00 4.57
117 118 4.582701 TTATGCTTGTTCCTTGGTTGTG 57.417 40.909 0.00 0.00 0.00 3.33
118 119 5.606348 TTTTATGCTTGTTCCTTGGTTGT 57.394 34.783 0.00 0.00 0.00 3.32
119 120 5.990996 ACATTTTATGCTTGTTCCTTGGTTG 59.009 36.000 0.00 0.00 0.00 3.77
120 121 5.990996 CACATTTTATGCTTGTTCCTTGGTT 59.009 36.000 0.00 0.00 0.00 3.67
121 122 5.070313 ACACATTTTATGCTTGTTCCTTGGT 59.930 36.000 0.00 0.00 0.00 3.67
122 123 5.540911 ACACATTTTATGCTTGTTCCTTGG 58.459 37.500 0.00 0.00 0.00 3.61
123 124 7.116233 GGTAACACATTTTATGCTTGTTCCTTG 59.884 37.037 0.00 0.00 33.34 3.61
124 125 7.151976 GGTAACACATTTTATGCTTGTTCCTT 58.848 34.615 0.00 0.00 33.34 3.36
125 126 6.266558 TGGTAACACATTTTATGCTTGTTCCT 59.733 34.615 0.00 0.00 46.17 3.36
126 127 6.451393 TGGTAACACATTTTATGCTTGTTCC 58.549 36.000 0.00 0.00 46.17 3.62
135 136 7.661027 AGCTTTTTGCATGGTAACACATTTTAT 59.339 29.630 0.00 0.00 46.01 1.40
136 137 6.989169 AGCTTTTTGCATGGTAACACATTTTA 59.011 30.769 0.00 0.00 46.01 1.52
137 138 5.821995 AGCTTTTTGCATGGTAACACATTTT 59.178 32.000 0.00 0.00 46.01 1.82
138 139 5.367302 AGCTTTTTGCATGGTAACACATTT 58.633 33.333 0.00 0.00 46.01 2.32
139 140 4.959723 AGCTTTTTGCATGGTAACACATT 58.040 34.783 0.00 0.00 46.01 2.71
140 141 4.281688 AGAGCTTTTTGCATGGTAACACAT 59.718 37.500 0.00 0.00 46.01 3.21
141 142 3.636300 AGAGCTTTTTGCATGGTAACACA 59.364 39.130 0.00 0.00 46.01 3.72
142 143 4.243007 AGAGCTTTTTGCATGGTAACAC 57.757 40.909 0.00 0.00 46.01 3.32
143 144 4.099266 ACAAGAGCTTTTTGCATGGTAACA 59.901 37.500 10.74 0.00 46.92 2.41
144 145 4.620982 ACAAGAGCTTTTTGCATGGTAAC 58.379 39.130 10.74 0.00 45.94 2.50
145 146 4.935352 ACAAGAGCTTTTTGCATGGTAA 57.065 36.364 10.74 0.00 45.94 2.85
146 147 4.619973 CAACAAGAGCTTTTTGCATGGTA 58.380 39.130 10.74 0.00 45.94 3.25
147 148 3.460103 CAACAAGAGCTTTTTGCATGGT 58.540 40.909 10.74 0.00 45.94 3.55
153 154 3.719924 TCCATGCAACAAGAGCTTTTTG 58.280 40.909 9.58 9.58 34.40 2.44
154 155 4.612264 ATCCATGCAACAAGAGCTTTTT 57.388 36.364 0.00 0.00 0.00 1.94
155 156 4.768968 AGTATCCATGCAACAAGAGCTTTT 59.231 37.500 0.00 0.00 0.00 2.27
156 157 4.338879 AGTATCCATGCAACAAGAGCTTT 58.661 39.130 0.00 0.00 0.00 3.51
157 158 3.960571 AGTATCCATGCAACAAGAGCTT 58.039 40.909 0.00 0.00 0.00 3.74
158 159 3.641434 AGTATCCATGCAACAAGAGCT 57.359 42.857 0.00 0.00 0.00 4.09
159 160 4.697514 TCTAGTATCCATGCAACAAGAGC 58.302 43.478 0.00 0.00 0.00 4.09
160 161 6.040278 TCTCTCTAGTATCCATGCAACAAGAG 59.960 42.308 0.00 0.00 0.00 2.85
161 162 5.893824 TCTCTCTAGTATCCATGCAACAAGA 59.106 40.000 0.00 0.00 0.00 3.02
162 163 5.982516 GTCTCTCTAGTATCCATGCAACAAG 59.017 44.000 0.00 0.00 0.00 3.16
163 164 5.422012 TGTCTCTCTAGTATCCATGCAACAA 59.578 40.000 0.00 0.00 0.00 2.83
164 165 4.956075 TGTCTCTCTAGTATCCATGCAACA 59.044 41.667 0.00 0.00 0.00 3.33
165 166 5.521906 TGTCTCTCTAGTATCCATGCAAC 57.478 43.478 0.00 0.00 0.00 4.17
166 167 6.737720 ATTGTCTCTCTAGTATCCATGCAA 57.262 37.500 0.00 0.00 0.00 4.08
167 168 6.071672 GCTATTGTCTCTCTAGTATCCATGCA 60.072 42.308 0.00 0.00 0.00 3.96
168 169 6.152661 AGCTATTGTCTCTCTAGTATCCATGC 59.847 42.308 0.00 0.00 0.00 4.06
169 170 7.392953 TGAGCTATTGTCTCTCTAGTATCCATG 59.607 40.741 0.00 0.00 0.00 3.66
170 171 7.465960 TGAGCTATTGTCTCTCTAGTATCCAT 58.534 38.462 0.00 0.00 0.00 3.41
171 172 6.842676 TGAGCTATTGTCTCTCTAGTATCCA 58.157 40.000 0.00 0.00 0.00 3.41
172 173 7.753309 TTGAGCTATTGTCTCTCTAGTATCC 57.247 40.000 0.00 0.00 0.00 2.59
173 174 9.624697 CAATTGAGCTATTGTCTCTCTAGTATC 57.375 37.037 0.00 0.00 32.17 2.24
174 175 8.087750 GCAATTGAGCTATTGTCTCTCTAGTAT 58.912 37.037 10.34 0.00 37.72 2.12
175 176 7.286546 AGCAATTGAGCTATTGTCTCTCTAGTA 59.713 37.037 10.34 0.00 44.50 1.82
176 177 6.098124 AGCAATTGAGCTATTGTCTCTCTAGT 59.902 38.462 10.34 0.00 44.50 2.57
177 178 6.514947 AGCAATTGAGCTATTGTCTCTCTAG 58.485 40.000 10.34 0.00 44.50 2.43
178 179 6.097412 TGAGCAATTGAGCTATTGTCTCTCTA 59.903 38.462 21.29 9.38 46.75 2.43
179 180 5.105023 TGAGCAATTGAGCTATTGTCTCTCT 60.105 40.000 21.29 9.11 46.75 3.10
180 181 5.114780 TGAGCAATTGAGCTATTGTCTCTC 58.885 41.667 21.29 15.19 46.75 3.20
181 182 5.095145 TGAGCAATTGAGCTATTGTCTCT 57.905 39.130 21.29 9.60 46.75 3.10
182 183 5.808042 TTGAGCAATTGAGCTATTGTCTC 57.192 39.130 10.34 17.64 46.75 3.36
183 184 6.405508 CCATTTGAGCAATTGAGCTATTGTCT 60.406 38.462 10.34 7.99 46.75 3.41
184 185 5.747197 CCATTTGAGCAATTGAGCTATTGTC 59.253 40.000 10.34 7.56 46.75 3.18
185 186 5.394883 CCCATTTGAGCAATTGAGCTATTGT 60.395 40.000 10.34 0.00 46.75 2.71
186 187 5.047847 CCCATTTGAGCAATTGAGCTATTG 58.952 41.667 10.34 5.04 46.75 1.90
187 188 4.442472 GCCCATTTGAGCAATTGAGCTATT 60.442 41.667 10.34 0.00 46.75 1.73
188 189 3.069158 GCCCATTTGAGCAATTGAGCTAT 59.931 43.478 10.34 0.00 46.75 2.97
189 190 2.428171 GCCCATTTGAGCAATTGAGCTA 59.572 45.455 10.34 0.00 46.75 3.32
191 192 1.206371 AGCCCATTTGAGCAATTGAGC 59.794 47.619 10.34 0.00 0.00 4.26
192 193 2.479049 CGAGCCCATTTGAGCAATTGAG 60.479 50.000 10.34 0.00 0.00 3.02
193 194 1.473677 CGAGCCCATTTGAGCAATTGA 59.526 47.619 10.34 0.00 0.00 2.57
194 195 1.473677 TCGAGCCCATTTGAGCAATTG 59.526 47.619 0.00 0.00 0.00 2.32
195 196 1.838112 TCGAGCCCATTTGAGCAATT 58.162 45.000 0.00 0.00 0.00 2.32
196 197 2.062971 ATCGAGCCCATTTGAGCAAT 57.937 45.000 0.00 0.00 0.00 3.56
197 198 2.288666 GTATCGAGCCCATTTGAGCAA 58.711 47.619 0.00 0.00 0.00 3.91
198 199 1.209261 TGTATCGAGCCCATTTGAGCA 59.791 47.619 0.00 0.00 0.00 4.26
199 200 1.599542 GTGTATCGAGCCCATTTGAGC 59.400 52.381 0.00 0.00 0.00 4.26
200 201 3.185246 AGTGTATCGAGCCCATTTGAG 57.815 47.619 0.00 0.00 0.00 3.02
201 202 3.270027 CAAGTGTATCGAGCCCATTTGA 58.730 45.455 9.81 0.00 30.14 2.69
202 203 3.009723 ACAAGTGTATCGAGCCCATTTG 58.990 45.455 12.38 12.38 33.56 2.32
203 204 3.270877 GACAAGTGTATCGAGCCCATTT 58.729 45.455 0.00 0.00 0.00 2.32
204 205 2.420129 GGACAAGTGTATCGAGCCCATT 60.420 50.000 0.00 0.00 0.00 3.16
205 206 1.139058 GGACAAGTGTATCGAGCCCAT 59.861 52.381 0.00 0.00 0.00 4.00
206 207 0.535335 GGACAAGTGTATCGAGCCCA 59.465 55.000 0.00 0.00 0.00 5.36
207 208 0.535335 TGGACAAGTGTATCGAGCCC 59.465 55.000 0.00 0.00 0.00 5.19
208 209 1.641577 GTGGACAAGTGTATCGAGCC 58.358 55.000 0.00 0.00 0.00 4.70
209 210 1.067142 TGGTGGACAAGTGTATCGAGC 60.067 52.381 0.00 0.00 0.00 5.03
210 211 2.993899 GTTGGTGGACAAGTGTATCGAG 59.006 50.000 0.00 0.00 40.38 4.04
211 212 2.289195 GGTTGGTGGACAAGTGTATCGA 60.289 50.000 0.00 0.00 40.38 3.59
212 213 2.073816 GGTTGGTGGACAAGTGTATCG 58.926 52.381 0.00 0.00 40.38 2.92
213 214 3.418684 AGGTTGGTGGACAAGTGTATC 57.581 47.619 0.00 0.00 40.38 2.24
214 215 4.843728 CATAGGTTGGTGGACAAGTGTAT 58.156 43.478 0.00 0.00 40.38 2.29
215 216 3.558321 GCATAGGTTGGTGGACAAGTGTA 60.558 47.826 0.00 0.00 40.38 2.90
216 217 2.814097 GCATAGGTTGGTGGACAAGTGT 60.814 50.000 0.00 0.00 40.38 3.55
217 218 1.812571 GCATAGGTTGGTGGACAAGTG 59.187 52.381 0.00 0.00 40.38 3.16
218 219 1.610624 CGCATAGGTTGGTGGACAAGT 60.611 52.381 0.00 0.00 40.38 3.16
219 220 1.086696 CGCATAGGTTGGTGGACAAG 58.913 55.000 0.00 0.00 40.38 3.16
220 221 0.687920 TCGCATAGGTTGGTGGACAA 59.312 50.000 0.00 0.00 36.54 3.18
221 222 0.249120 CTCGCATAGGTTGGTGGACA 59.751 55.000 0.00 0.00 0.00 4.02
222 223 0.535335 TCTCGCATAGGTTGGTGGAC 59.465 55.000 0.00 0.00 0.00 4.02
223 224 1.271856 TTCTCGCATAGGTTGGTGGA 58.728 50.000 0.00 0.00 0.00 4.02
224 225 1.737793 GTTTCTCGCATAGGTTGGTGG 59.262 52.381 0.00 0.00 0.00 4.61
225 226 2.422597 TGTTTCTCGCATAGGTTGGTG 58.577 47.619 0.00 0.00 0.00 4.17
226 227 2.851263 TGTTTCTCGCATAGGTTGGT 57.149 45.000 0.00 0.00 0.00 3.67
227 228 3.731867 GCATTGTTTCTCGCATAGGTTGG 60.732 47.826 0.00 0.00 0.00 3.77
228 229 3.429085 GCATTGTTTCTCGCATAGGTTG 58.571 45.455 0.00 0.00 0.00 3.77
229 230 2.423538 GGCATTGTTTCTCGCATAGGTT 59.576 45.455 0.00 0.00 0.00 3.50
230 231 2.017049 GGCATTGTTTCTCGCATAGGT 58.983 47.619 0.00 0.00 0.00 3.08
231 232 1.003545 CGGCATTGTTTCTCGCATAGG 60.004 52.381 0.00 0.00 0.00 2.57
232 233 1.665679 ACGGCATTGTTTCTCGCATAG 59.334 47.619 0.00 0.00 0.00 2.23
233 234 1.663643 GACGGCATTGTTTCTCGCATA 59.336 47.619 0.00 0.00 0.00 3.14
234 235 0.447801 GACGGCATTGTTTCTCGCAT 59.552 50.000 0.00 0.00 0.00 4.73
235 236 0.602638 AGACGGCATTGTTTCTCGCA 60.603 50.000 0.00 0.00 0.00 5.10
236 237 0.517316 AAGACGGCATTGTTTCTCGC 59.483 50.000 0.00 0.00 0.00 5.03
237 238 1.798223 TGAAGACGGCATTGTTTCTCG 59.202 47.619 0.00 0.00 0.00 4.04
238 239 3.896648 TTGAAGACGGCATTGTTTCTC 57.103 42.857 0.00 0.00 0.00 2.87
239 240 3.191371 GGATTGAAGACGGCATTGTTTCT 59.809 43.478 0.00 0.00 0.00 2.52
240 241 3.501950 GGATTGAAGACGGCATTGTTTC 58.498 45.455 0.00 0.00 0.00 2.78
241 242 2.231235 GGGATTGAAGACGGCATTGTTT 59.769 45.455 0.00 0.00 0.00 2.83
242 243 1.818674 GGGATTGAAGACGGCATTGTT 59.181 47.619 0.00 0.00 0.00 2.83
243 244 1.271871 TGGGATTGAAGACGGCATTGT 60.272 47.619 0.00 0.00 0.00 2.71
244 245 1.462616 TGGGATTGAAGACGGCATTG 58.537 50.000 0.00 0.00 0.00 2.82
245 246 2.094675 CTTGGGATTGAAGACGGCATT 58.905 47.619 0.00 0.00 0.00 3.56
246 247 1.004745 ACTTGGGATTGAAGACGGCAT 59.995 47.619 0.00 0.00 0.00 4.40
247 248 0.400213 ACTTGGGATTGAAGACGGCA 59.600 50.000 0.00 0.00 0.00 5.69
248 249 2.093658 TCTACTTGGGATTGAAGACGGC 60.094 50.000 0.00 0.00 0.00 5.68
249 250 3.522553 GTCTACTTGGGATTGAAGACGG 58.477 50.000 0.00 0.00 0.00 4.79
250 251 3.195825 AGGTCTACTTGGGATTGAAGACG 59.804 47.826 0.00 0.00 35.34 4.18
251 252 4.678309 CGAGGTCTACTTGGGATTGAAGAC 60.678 50.000 0.00 0.00 34.08 3.01
252 253 3.447586 CGAGGTCTACTTGGGATTGAAGA 59.552 47.826 0.00 0.00 0.00 2.87
253 254 3.786635 CGAGGTCTACTTGGGATTGAAG 58.213 50.000 0.00 0.00 0.00 3.02
254 255 2.093658 GCGAGGTCTACTTGGGATTGAA 60.094 50.000 0.00 0.00 0.00 2.69
255 256 1.480954 GCGAGGTCTACTTGGGATTGA 59.519 52.381 0.00 0.00 0.00 2.57
256 257 1.473434 GGCGAGGTCTACTTGGGATTG 60.473 57.143 0.00 0.00 0.00 2.67
257 258 0.831307 GGCGAGGTCTACTTGGGATT 59.169 55.000 0.00 0.00 0.00 3.01
258 259 1.049289 GGGCGAGGTCTACTTGGGAT 61.049 60.000 0.00 0.00 0.00 3.85
259 260 1.684734 GGGCGAGGTCTACTTGGGA 60.685 63.158 0.00 0.00 0.00 4.37
260 261 2.901042 GGGCGAGGTCTACTTGGG 59.099 66.667 0.00 0.00 0.00 4.12
261 262 2.494918 CGGGCGAGGTCTACTTGG 59.505 66.667 0.00 0.00 0.00 3.61
262 263 2.202756 GCGGGCGAGGTCTACTTG 60.203 66.667 0.00 0.00 0.00 3.16
263 264 3.459063 GGCGGGCGAGGTCTACTT 61.459 66.667 0.00 0.00 0.00 2.24
282 283 3.930504 GCTCCCAGCCATCAAAGG 58.069 61.111 0.00 0.00 34.48 3.11
307 308 2.981909 CGGCGGGCGAGGTCTATA 60.982 66.667 20.10 0.00 0.00 1.31
325 326 2.654877 GCTCCCCGTCGTCAAAGA 59.345 61.111 0.00 0.00 0.00 2.52
360 362 2.762459 ATTCCCTCGCCACCGCTA 60.762 61.111 0.00 0.00 0.00 4.26
366 368 1.218047 CTTCGTGATTCCCTCGCCA 59.782 57.895 0.00 0.00 0.00 5.69
382 384 0.035056 CCCAAGCGTCCCATTCTCTT 60.035 55.000 0.00 0.00 0.00 2.85
399 401 0.547075 GAAGGAGAAACCCTAGCCCC 59.453 60.000 0.00 0.00 40.05 5.80
519 521 9.784531 GATCCAATTCTATGAATCAAAGGACTA 57.215 33.333 0.00 0.00 0.00 2.59
535 537 5.388599 AAATTCCTACGGGATCCAATTCT 57.611 39.130 15.23 0.00 41.87 2.40
606 609 9.500785 ACAAAGAAATCAAGAAAAAGGTTGAAA 57.499 25.926 0.00 0.00 36.31 2.69
608 611 9.500785 AAACAAAGAAATCAAGAAAAAGGTTGA 57.499 25.926 0.00 0.00 37.10 3.18
619 622 7.148440 TGGCACAAGAAAAACAAAGAAATCAAG 60.148 33.333 0.00 0.00 31.92 3.02
638 641 4.191167 ACAAGGAGTGTTTGATGGCACAA 61.191 43.478 0.00 0.00 39.11 3.33
651 654 9.113838 AGTTAGCAATATGATTAACAAGGAGTG 57.886 33.333 0.00 0.00 0.00 3.51
653 656 9.553064 AGAGTTAGCAATATGATTAACAAGGAG 57.447 33.333 0.00 0.00 0.00 3.69
676 679 7.174426 TGGCATGCTCATTTGAATCTTATAGAG 59.826 37.037 18.92 0.00 0.00 2.43
677 680 6.999871 TGGCATGCTCATTTGAATCTTATAGA 59.000 34.615 18.92 0.00 0.00 1.98
678 681 7.082602 GTGGCATGCTCATTTGAATCTTATAG 58.917 38.462 18.92 0.00 0.00 1.31
683 686 3.093814 TGTGGCATGCTCATTTGAATCT 58.906 40.909 18.92 0.00 0.00 2.40
691 694 6.720112 ATAAAATTAGTGTGGCATGCTCAT 57.280 33.333 18.92 9.68 0.00 2.90
721 724 7.335924 CCCAGGATTTTGAAAACTACGAATAGA 59.664 37.037 0.00 0.00 32.23 1.98
722 725 7.335924 TCCCAGGATTTTGAAAACTACGAATAG 59.664 37.037 0.00 0.00 34.25 1.73
728 731 7.227049 TGATTCCCAGGATTTTGAAAACTAC 57.773 36.000 0.00 0.00 0.00 2.73
746 750 3.891977 GGATAAGGGCCTCTTTTGATTCC 59.108 47.826 6.46 0.94 36.93 3.01
747 751 4.797743 AGGATAAGGGCCTCTTTTGATTC 58.202 43.478 6.46 0.09 36.93 2.52
854 861 3.383825 GGGAGAGAGTTTTATACCGCAGA 59.616 47.826 0.00 0.00 0.00 4.26
856 863 2.433239 GGGGAGAGAGTTTTATACCGCA 59.567 50.000 0.00 0.00 0.00 5.69
857 864 2.545322 CGGGGAGAGAGTTTTATACCGC 60.545 54.545 0.00 0.00 31.93 5.68
858 865 2.692041 ACGGGGAGAGAGTTTTATACCG 59.308 50.000 0.00 0.00 43.93 4.02
859 866 3.959449 AGACGGGGAGAGAGTTTTATACC 59.041 47.826 0.00 0.00 0.00 2.73
1350 1358 0.516877 CAATGAAGCGCTTGACGGAA 59.483 50.000 30.47 6.04 43.93 4.30
1773 2084 4.022416 TGTTGCAAGACAATGGACATAACC 60.022 41.667 0.00 0.00 41.27 2.85
1836 2230 8.706322 AGACTTGTATGGGTACAAAGAAAATT 57.294 30.769 0.00 0.00 46.91 1.82
1837 2231 9.975218 ATAGACTTGTATGGGTACAAAGAAAAT 57.025 29.630 0.00 0.00 46.91 1.82
1863 2257 6.000246 TGAGATATGCACATTTTAGGTCCA 58.000 37.500 0.00 0.00 0.00 4.02
1914 2308 8.821686 ATCAGTCCATAAATTCACATGGTTAA 57.178 30.769 11.43 0.00 42.07 2.01
2302 2699 8.055279 TGATTATCCAAGTGGTTCAGAATTTC 57.945 34.615 0.00 0.00 36.34 2.17
2767 3178 4.001652 TCTCGCTAATAGCACGCTATAGT 58.998 43.478 13.15 0.68 42.58 2.12
2997 3416 6.012508 TCCAGGAACAATAGAAGAGGAATTGT 60.013 38.462 0.00 0.00 43.74 2.71
2998 3417 6.418101 TCCAGGAACAATAGAAGAGGAATTG 58.582 40.000 0.00 0.00 36.80 2.32
3076 3495 1.202510 GCAGGAAATTTGGTGTGTGCA 60.203 47.619 0.00 0.00 0.00 4.57
3499 4133 0.319555 CCTGTGTCACGTGGGTAGTG 60.320 60.000 17.00 2.27 40.71 2.74
3652 4287 3.830178 TCGGACAGTGTGGAGAGAATTTA 59.170 43.478 0.00 0.00 0.00 1.40
3670 4305 3.407967 GGGCTGGGGTGATTCGGA 61.408 66.667 0.00 0.00 0.00 4.55
3857 4494 0.608640 CGGAGGGTTCTAGTTGCAGT 59.391 55.000 0.00 0.00 0.00 4.40
4138 4782 3.387947 CCCTGGCCGGTTCGTAGT 61.388 66.667 11.58 0.00 0.00 2.73
4233 4904 1.389609 CCATGATGGGTTGCAGCTCC 61.390 60.000 2.79 0.00 32.67 4.70
4234 4905 2.012902 GCCATGATGGGTTGCAGCTC 62.013 60.000 14.26 0.00 38.19 4.09
4235 4906 2.056223 GCCATGATGGGTTGCAGCT 61.056 57.895 14.26 0.00 38.19 4.24
4236 4907 2.497770 GCCATGATGGGTTGCAGC 59.502 61.111 14.26 0.00 38.19 5.25
4237 4908 2.777972 CGGCCATGATGGGTTGCAG 61.778 63.158 14.26 0.00 38.19 4.41
4238 4909 2.755064 CGGCCATGATGGGTTGCA 60.755 61.111 14.26 0.00 38.19 4.08
4239 4910 3.530260 CCGGCCATGATGGGTTGC 61.530 66.667 14.26 0.00 38.19 4.17
4240 4911 1.825191 CTCCGGCCATGATGGGTTG 60.825 63.158 14.26 0.00 38.19 3.77
4241 4912 2.597340 CTCCGGCCATGATGGGTT 59.403 61.111 14.26 0.00 38.19 4.11
4242 4913 4.195334 GCTCCGGCCATGATGGGT 62.195 66.667 14.26 0.00 38.19 4.51
4243 4914 3.882326 AGCTCCGGCCATGATGGG 61.882 66.667 14.26 0.00 38.19 4.00
4244 4915 2.593725 CAGCTCCGGCCATGATGG 60.594 66.667 7.21 7.21 41.55 3.51
4245 4916 3.285215 GCAGCTCCGGCCATGATG 61.285 66.667 2.24 1.59 39.73 3.07
4246 4917 3.348554 TTGCAGCTCCGGCCATGAT 62.349 57.895 2.24 0.00 39.73 2.45
4247 4918 4.032452 TTGCAGCTCCGGCCATGA 62.032 61.111 2.24 0.00 39.73 3.07
4248 4919 3.818787 GTTGCAGCTCCGGCCATG 61.819 66.667 2.24 0.00 39.73 3.66
4254 4925 3.589654 TTCCTCGGTTGCAGCTCCG 62.590 63.158 18.90 18.90 46.93 4.63
4992 5769 2.660553 CTTTGCAACCGCGCTTCACA 62.661 55.000 5.56 0.00 42.97 3.58
5008 5785 1.355210 CGCCACAAAGTGCGTCTTT 59.645 52.632 0.00 1.64 45.96 2.52
5071 5848 1.078426 CGATCGCCCCCTGTTTTCT 60.078 57.895 0.26 0.00 0.00 2.52
5072 5849 1.078708 TCGATCGCCCCCTGTTTTC 60.079 57.895 11.09 0.00 0.00 2.29
5073 5850 1.078426 CTCGATCGCCCCCTGTTTT 60.078 57.895 11.09 0.00 0.00 2.43
5146 5930 1.073373 TCGACCGGCCCAAATTTCA 59.927 52.632 0.00 0.00 0.00 2.69
5293 6735 2.021457 CCCCACAAAAGAACGTGAAGT 58.979 47.619 0.00 0.00 35.02 3.01
5300 6742 3.440522 GCTCTACATCCCCACAAAAGAAC 59.559 47.826 0.00 0.00 0.00 3.01
5382 6827 7.809238 AGAGAAGACAATATTGGATCAATGGA 58.191 34.615 19.37 0.00 35.54 3.41
5383 6828 9.736414 ATAGAGAAGACAATATTGGATCAATGG 57.264 33.333 19.37 0.00 35.54 3.16
5526 6971 3.701040 CCCAGGGGTACAAATGAATGAAG 59.299 47.826 0.00 0.00 0.00 3.02
5720 7167 7.020827 AGAAATTGGTGGAGAGTTATCAAGA 57.979 36.000 0.00 0.00 0.00 3.02
5750 7197 8.995220 GCGTAATCCAAGGATAACATTATTACA 58.005 33.333 1.29 0.00 33.97 2.41
5751 7198 8.995220 TGCGTAATCCAAGGATAACATTATTAC 58.005 33.333 1.29 0.00 33.97 1.89
5752 7199 9.214957 CTGCGTAATCCAAGGATAACATTATTA 57.785 33.333 1.29 0.00 33.97 0.98
5753 7200 7.936847 TCTGCGTAATCCAAGGATAACATTATT 59.063 33.333 1.29 0.00 33.97 1.40
5754 7201 7.450074 TCTGCGTAATCCAAGGATAACATTAT 58.550 34.615 1.29 0.00 33.97 1.28
5835 7282 3.119352 GCTGAAGGGCTTGTTTATCCTTG 60.119 47.826 0.00 0.00 39.46 3.61
6062 7509 6.153000 ACAGTTCCTCGAATTTAGCTCTAGAA 59.847 38.462 0.00 0.00 0.00 2.10
6185 7633 5.876651 AGTATGTGATGAGTGAAGCCATA 57.123 39.130 0.00 0.00 0.00 2.74
6337 7785 4.080526 TCCTTGCCTGTAATCTTCCTAACC 60.081 45.833 0.00 0.00 0.00 2.85
6618 8066 6.882656 ACTAGAGATTATGCTCTGCAAAGAA 58.117 36.000 0.00 0.00 44.59 2.52
6703 8152 8.639761 GGGAGCTACTTGAGATGTAACTAAATA 58.360 37.037 0.00 0.00 0.00 1.40
6731 8180 1.734465 GGTCTTGCACTGTACATGCTC 59.266 52.381 22.31 13.82 43.77 4.26
7432 9181 5.981088 AACATCATAACAGATTTGGTGCA 57.019 34.783 0.00 0.00 0.00 4.57
7589 9496 5.091261 AGGCTGTACAAGAGGACAAATAG 57.909 43.478 0.00 0.00 0.00 1.73
7787 9696 1.078848 CTCTTTGTCCTCCTGGGCG 60.079 63.158 0.00 0.00 41.88 6.13
7969 9878 2.173519 CCTCCATGGCAGTTTTCATGT 58.826 47.619 6.96 0.00 39.12 3.21
8170 10079 3.031013 TGTATCACTCACCACGATCCAT 58.969 45.455 0.00 0.00 0.00 3.41
8171 10080 2.452505 TGTATCACTCACCACGATCCA 58.547 47.619 0.00 0.00 0.00 3.41
8172 10081 3.735237 ATGTATCACTCACCACGATCC 57.265 47.619 0.00 0.00 0.00 3.36
8173 10082 5.453648 GTCTATGTATCACTCACCACGATC 58.546 45.833 0.00 0.00 0.00 3.69
8174 10083 4.278669 GGTCTATGTATCACTCACCACGAT 59.721 45.833 0.00 0.00 0.00 3.73
8175 10084 3.630769 GGTCTATGTATCACTCACCACGA 59.369 47.826 0.00 0.00 0.00 4.35
8176 10085 3.243434 GGGTCTATGTATCACTCACCACG 60.243 52.174 0.00 0.00 0.00 4.94
8177 10086 3.961408 AGGGTCTATGTATCACTCACCAC 59.039 47.826 0.00 0.00 0.00 4.16
8178 10087 3.960755 CAGGGTCTATGTATCACTCACCA 59.039 47.826 0.00 0.00 0.00 4.17
8179 10088 4.215908 TCAGGGTCTATGTATCACTCACC 58.784 47.826 0.00 0.00 0.00 4.02
8180 10089 4.890581 ACTCAGGGTCTATGTATCACTCAC 59.109 45.833 0.00 0.00 0.00 3.51
8181 10090 5.130705 ACTCAGGGTCTATGTATCACTCA 57.869 43.478 0.00 0.00 0.00 3.41
8182 10091 7.768807 ATAACTCAGGGTCTATGTATCACTC 57.231 40.000 0.00 0.00 0.00 3.51
8183 10092 9.830186 AATATAACTCAGGGTCTATGTATCACT 57.170 33.333 0.00 0.00 0.00 3.41
8188 10097 9.521841 CTCAGAATATAACTCAGGGTCTATGTA 57.478 37.037 0.00 0.00 0.00 2.29
8189 10098 8.007742 ACTCAGAATATAACTCAGGGTCTATGT 58.992 37.037 0.00 0.00 0.00 2.29
8190 10099 8.303156 CACTCAGAATATAACTCAGGGTCTATG 58.697 40.741 0.00 0.00 0.00 2.23
8191 10100 7.453126 CCACTCAGAATATAACTCAGGGTCTAT 59.547 40.741 0.00 0.00 0.00 1.98
8192 10101 6.778069 CCACTCAGAATATAACTCAGGGTCTA 59.222 42.308 0.00 0.00 0.00 2.59
8193 10102 5.600484 CCACTCAGAATATAACTCAGGGTCT 59.400 44.000 0.00 0.00 0.00 3.85
8194 10103 5.740513 GCCACTCAGAATATAACTCAGGGTC 60.741 48.000 0.00 0.00 0.00 4.46
8195 10104 4.101741 GCCACTCAGAATATAACTCAGGGT 59.898 45.833 0.00 0.00 0.00 4.34
8196 10105 4.101585 TGCCACTCAGAATATAACTCAGGG 59.898 45.833 0.00 0.00 0.00 4.45
8197 10106 5.282055 TGCCACTCAGAATATAACTCAGG 57.718 43.478 0.00 0.00 0.00 3.86
8198 10107 7.215789 AGAATGCCACTCAGAATATAACTCAG 58.784 38.462 0.00 0.00 0.00 3.35
8199 10108 7.129457 AGAATGCCACTCAGAATATAACTCA 57.871 36.000 0.00 0.00 0.00 3.41
8200 10109 7.816995 CCTAGAATGCCACTCAGAATATAACTC 59.183 40.741 0.00 0.00 0.00 3.01
8408 10348 6.403878 TGACCTAAACATGGCTAGTTTACTC 58.596 40.000 9.82 8.53 39.65 2.59
8476 10417 5.121811 ACTTAGATGCACCATGATCTGTTC 58.878 41.667 0.00 0.00 31.29 3.18
8606 10547 6.212888 AGTCCATTTAAATCCTTGTCATGC 57.787 37.500 0.00 0.00 0.00 4.06
8805 10746 9.249053 ACTTGAGAATAGTGAGACTGAAGATAA 57.751 33.333 0.00 0.00 30.63 1.75
8827 10768 9.978044 TCATCAGAATAGAAGATATCACACTTG 57.022 33.333 5.32 0.00 0.00 3.16
8905 10848 6.910995 TCGAAGAAGTAACAAACCAAACAAA 58.089 32.000 0.00 0.00 0.00 2.83
8927 10872 8.934973 AATTCTTCGAACAAACTATTTCTTCG 57.065 30.769 0.00 5.64 36.02 3.79
8985 10930 1.429463 AAGAGCGTTCAATCGACCAC 58.571 50.000 1.01 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.