Multiple sequence alignment - TraesCS5D01G117100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G117100 chr5D 100.000 4885 0 0 1 4885 138901408 138896524 0.000000e+00 9022.0
1 TraesCS5D01G117100 chr5D 87.611 452 54 2 1 451 489799176 489798726 1.560000e-144 523.0
2 TraesCS5D01G117100 chr5A 95.167 1614 46 19 2963 4564 193920707 193922300 0.000000e+00 2519.0
3 TraesCS5D01G117100 chr5A 94.718 1136 34 7 1491 2606 193918866 193919995 0.000000e+00 1742.0
4 TraesCS5D01G117100 chr5A 88.859 736 54 12 1 733 193916026 193916736 0.000000e+00 880.0
5 TraesCS5D01G117100 chr5A 93.786 515 14 8 2312 2826 193920495 193919999 0.000000e+00 758.0
6 TraesCS5D01G117100 chr5A 97.229 433 12 0 891 1323 193918442 193918874 0.000000e+00 734.0
7 TraesCS5D01G117100 chr5A 94.800 250 13 0 4636 4885 193922442 193922691 1.650000e-104 390.0
8 TraesCS5D01G117100 chr5A 88.235 255 21 7 4637 4885 93189652 93189401 3.700000e-76 296.0
9 TraesCS5D01G117100 chr5A 87.730 163 19 1 1333 1494 3326866 3327028 6.450000e-44 189.0
10 TraesCS5D01G117100 chr5A 87.654 162 15 4 1333 1490 549040760 549040920 3.000000e-42 183.0
11 TraesCS5D01G117100 chr5A 86.567 67 6 2 4570 4633 93189767 93189701 2.440000e-08 71.3
12 TraesCS5D01G117100 chr5B 94.326 987 39 8 3418 4399 188794096 188793122 0.000000e+00 1496.0
13 TraesCS5D01G117100 chr5B 94.911 845 28 5 1491 2322 188801955 188801113 0.000000e+00 1308.0
14 TraesCS5D01G117100 chr5B 95.714 490 18 2 2934 3423 188800987 188800501 0.000000e+00 785.0
15 TraesCS5D01G117100 chr5B 88.590 631 56 8 2312 2931 282145838 282145213 0.000000e+00 752.0
16 TraesCS5D01G117100 chr5B 94.760 458 20 3 868 1323 188802402 188801947 0.000000e+00 710.0
17 TraesCS5D01G117100 chr5B 88.084 428 39 8 450 872 188802791 188802371 9.440000e-137 497.0
18 TraesCS5D01G117100 chr2A 91.879 628 30 6 2314 2931 749058138 749057522 0.000000e+00 857.0
19 TraesCS5D01G117100 chr2A 85.393 178 21 3 1333 1506 755063716 755063540 3.880000e-41 180.0
20 TraesCS5D01G117100 chr2A 87.692 65 6 2 688 751 715910897 715910960 1.890000e-09 75.0
21 TraesCS5D01G117100 chr7D 88.262 443 51 1 1 443 596278031 596278472 3.350000e-146 529.0
22 TraesCS5D01G117100 chr7D 87.919 447 51 3 6 451 219702713 219702269 1.560000e-144 523.0
23 TraesCS5D01G117100 chr1D 88.631 431 47 2 22 451 165090774 165090345 1.560000e-144 523.0
24 TraesCS5D01G117100 chr1D 87.389 452 54 3 1 451 224979781 224980230 2.610000e-142 516.0
25 TraesCS5D01G117100 chr1D 87.168 452 56 2 1 451 54729471 54729921 3.370000e-141 512.0
26 TraesCS5D01G117100 chr1D 88.372 129 9 4 4443 4566 198013128 198013001 3.050000e-32 150.0
27 TraesCS5D01G117100 chr1D 88.372 129 9 4 4443 4566 237900796 237900923 3.050000e-32 150.0
28 TraesCS5D01G117100 chr1D 88.372 129 9 4 4443 4566 425273778 425273651 3.050000e-32 150.0
29 TraesCS5D01G117100 chr4D 87.305 449 55 2 4 451 325684757 325684310 3.370000e-141 512.0
30 TraesCS5D01G117100 chr4D 89.313 131 10 3 4443 4569 131416710 131416840 1.410000e-35 161.0
31 TraesCS5D01G117100 chr2D 87.168 452 56 2 1 451 470458284 470458734 3.370000e-141 512.0
32 TraesCS5D01G117100 chr2D 87.196 453 55 3 1 451 534713241 534713692 3.370000e-141 512.0
33 TraesCS5D01G117100 chr2D 90.141 71 5 1 4569 4637 7406502 7406432 1.870000e-14 91.6
34 TraesCS5D01G117100 chr6A 79.531 640 102 19 2314 2931 422341559 422340927 3.490000e-116 429.0
35 TraesCS5D01G117100 chr6A 88.976 254 21 5 4637 4885 604441851 604442102 1.710000e-79 307.0
36 TraesCS5D01G117100 chr6A 88.554 166 14 4 1333 1494 20248137 20248301 3.860000e-46 196.0
37 TraesCS5D01G117100 chr6A 88.125 160 17 2 1333 1490 48656220 48656061 6.450000e-44 189.0
38 TraesCS5D01G117100 chr6A 86.567 67 6 2 4570 4633 604441736 604441802 2.440000e-08 71.3
39 TraesCS5D01G117100 chr7B 93.548 248 13 3 4639 4885 80075554 80075309 2.780000e-97 366.0
40 TraesCS5D01G117100 chr7B 88.304 171 18 2 1333 1501 276732830 276732660 2.310000e-48 204.0
41 TraesCS5D01G117100 chr6B 93.227 251 14 3 4636 4885 46771572 46771820 2.780000e-97 366.0
42 TraesCS5D01G117100 chr2B 93.200 250 10 3 4636 4885 531049048 531049290 1.290000e-95 361.0
43 TraesCS5D01G117100 chr2B 88.976 254 21 5 4637 4885 790366335 790366084 1.710000e-79 307.0
44 TraesCS5D01G117100 chr2B 95.556 45 2 0 557 601 419957982 419958026 6.780000e-09 73.1
45 TraesCS5D01G117100 chr2B 86.567 67 6 2 4570 4633 790366450 790366384 2.440000e-08 71.3
46 TraesCS5D01G117100 chr3B 89.370 254 23 3 4636 4885 609325372 609325119 2.840000e-82 316.0
47 TraesCS5D01G117100 chr3B 100.000 41 0 0 4570 4610 609325486 609325446 5.240000e-10 76.8
48 TraesCS5D01G117100 chr3B 88.679 53 6 0 560 612 333469199 333469251 1.130000e-06 65.8
49 TraesCS5D01G117100 chr3B 84.375 64 9 1 556 619 266623499 266623437 1.470000e-05 62.1
50 TraesCS5D01G117100 chr4B 84.553 246 32 6 4636 4876 584504984 584505228 6.320000e-59 239.0
51 TraesCS5D01G117100 chr4A 88.889 162 13 3 1333 1490 625794311 625794151 1.390000e-45 195.0
52 TraesCS5D01G117100 chr4A 87.975 158 18 1 1333 1490 603952036 603951880 8.350000e-43 185.0
53 TraesCS5D01G117100 chr4A 89.147 129 8 4 4443 4566 642488064 642488191 6.550000e-34 156.0
54 TraesCS5D01G117100 chr6D 87.117 163 15 5 1333 1490 157330104 157330265 3.880000e-41 180.0
55 TraesCS5D01G117100 chr6D 88.372 129 9 4 4443 4566 34808380 34808507 3.050000e-32 150.0
56 TraesCS5D01G117100 chr6D 88.372 129 9 4 4443 4566 336139281 336139408 3.050000e-32 150.0
57 TraesCS5D01G117100 chr1B 91.603 131 3 6 4443 4569 365506332 365506458 1.810000e-39 174.0
58 TraesCS5D01G117100 chr1A 90.076 131 7 4 4443 4569 319075481 319075609 1.090000e-36 165.0
59 TraesCS5D01G117100 chr3A 76.336 131 23 5 475 600 246029011 246029138 4.080000e-06 63.9
60 TraesCS5D01G117100 chr3D 80.247 81 13 3 540 619 185800946 185800868 1.900000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G117100 chr5D 138896524 138901408 4884 True 9022 9022 100.00000 1 4885 1 chr5D.!!$R1 4884
1 TraesCS5D01G117100 chr5A 193916026 193922691 6665 False 1253 2519 94.15460 1 4885 5 chr5A.!!$F3 4884
2 TraesCS5D01G117100 chr5B 188793122 188794096 974 True 1496 1496 94.32600 3418 4399 1 chr5B.!!$R1 981
3 TraesCS5D01G117100 chr5B 188800501 188802791 2290 True 825 1308 93.36725 450 3423 4 chr5B.!!$R3 2973
4 TraesCS5D01G117100 chr5B 282145213 282145838 625 True 752 752 88.59000 2312 2931 1 chr5B.!!$R2 619
5 TraesCS5D01G117100 chr2A 749057522 749058138 616 True 857 857 91.87900 2314 2931 1 chr2A.!!$R1 617
6 TraesCS5D01G117100 chr6A 422340927 422341559 632 True 429 429 79.53100 2314 2931 1 chr6A.!!$R2 617

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
272 273 0.107703 TGATCGGCTGCGAAATTCCT 60.108 50.0 0.0 0.0 0.00 3.36 F
275 276 0.248012 TCGGCTGCGAAATTCCTACA 59.752 50.0 0.0 0.0 0.00 2.74 F
311 312 0.249073 ATTTCAGCTCGATCCGACCG 60.249 55.0 0.0 0.0 0.00 4.79 F
1495 3073 0.682852 CCCTAGACACACCCGTTTGA 59.317 55.0 0.0 0.0 0.00 2.69 F
2136 3739 0.108329 ACCAGATTAGCGTCAACCGG 60.108 55.0 0.0 0.0 36.94 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1470 3048 0.107654 GGGTGTGTCTAGGGCACATC 60.108 60.000 18.92 18.25 46.66 3.06 R
1476 3054 0.682852 TCAAACGGGTGTGTCTAGGG 59.317 55.000 0.00 0.00 0.00 3.53 R
1512 3090 2.561569 ACATTGGCATTAGTAGGCGTC 58.438 47.619 0.00 0.00 30.13 5.19 R
3027 5005 0.178967 TGATGCTGGGTTGGCAAGAA 60.179 50.000 0.00 0.00 43.14 2.52 R
4057 6037 1.217942 TGCCCTACAGGAGCATAGAGA 59.782 52.381 7.18 0.00 36.78 3.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 6.601613 TGTTTTTCTGGACAGTGAACTTGTAT 59.398 34.615 0.00 0.00 0.00 2.29
38 39 1.206132 TGAACTTGTATCCGCCGTCAT 59.794 47.619 0.00 0.00 0.00 3.06
44 45 2.916052 TATCCGCCGTCATCGCCTC 61.916 63.158 0.00 0.00 35.54 4.70
51 52 2.026879 GTCATCGCCTCCTCGAGC 59.973 66.667 6.99 0.00 42.14 5.03
62 63 2.437343 CCTCGAGCGTCGCTTTGAC 61.437 63.158 22.67 7.42 39.88 3.18
99 100 6.099341 GGAATTGTGCGGAAATTGAGTTTAT 58.901 36.000 2.79 0.00 0.00 1.40
102 103 8.687824 AATTGTGCGGAAATTGAGTTTATAAG 57.312 30.769 0.00 0.00 0.00 1.73
123 124 1.314730 ACCCTGCAAAATTTCGTCGT 58.685 45.000 0.00 0.00 0.00 4.34
154 155 3.376540 GAGAAATCTCCGTTGATCTCCG 58.623 50.000 0.00 0.00 37.02 4.63
183 184 1.519455 GCCCTGTCGAATCTGGACG 60.519 63.158 0.00 0.00 37.22 4.79
185 186 4.814900 CTGTCGAATCTGGACGGG 57.185 61.111 0.00 0.00 37.18 5.28
206 207 0.108615 ATCTGGACGAGTTTGGAGCG 60.109 55.000 0.00 0.00 0.00 5.03
246 247 2.837591 TCGGACATCCTTTGGAAGATCA 59.162 45.455 0.00 0.00 34.34 2.92
250 251 5.012893 GGACATCCTTTGGAAGATCAAACT 58.987 41.667 0.00 0.00 34.34 2.66
264 265 0.453282 CAAACTGTTGATCGGCTGCG 60.453 55.000 0.00 0.00 36.83 5.18
265 266 0.602638 AAACTGTTGATCGGCTGCGA 60.603 50.000 0.00 0.00 0.00 5.10
266 267 0.602638 AACTGTTGATCGGCTGCGAA 60.603 50.000 0.00 0.00 0.00 4.70
267 268 0.602638 ACTGTTGATCGGCTGCGAAA 60.603 50.000 0.00 0.00 0.00 3.46
268 269 0.729116 CTGTTGATCGGCTGCGAAAT 59.271 50.000 0.00 0.00 0.00 2.17
269 270 1.131126 CTGTTGATCGGCTGCGAAATT 59.869 47.619 0.00 0.00 0.00 1.82
270 271 1.130373 TGTTGATCGGCTGCGAAATTC 59.870 47.619 0.00 0.00 0.00 2.17
271 272 0.732571 TTGATCGGCTGCGAAATTCC 59.267 50.000 0.00 0.00 0.00 3.01
272 273 0.107703 TGATCGGCTGCGAAATTCCT 60.108 50.000 0.00 0.00 0.00 3.36
273 274 1.138069 TGATCGGCTGCGAAATTCCTA 59.862 47.619 0.00 0.00 0.00 2.94
274 275 1.527311 GATCGGCTGCGAAATTCCTAC 59.473 52.381 0.00 0.00 0.00 3.18
275 276 0.248012 TCGGCTGCGAAATTCCTACA 59.752 50.000 0.00 0.00 0.00 2.74
276 277 1.134521 TCGGCTGCGAAATTCCTACAT 60.135 47.619 0.00 0.00 0.00 2.29
277 278 1.261619 CGGCTGCGAAATTCCTACATC 59.738 52.381 0.00 0.00 0.00 3.06
278 279 2.565841 GGCTGCGAAATTCCTACATCT 58.434 47.619 0.00 0.00 0.00 2.90
279 280 3.728845 GGCTGCGAAATTCCTACATCTA 58.271 45.455 0.00 0.00 0.00 1.98
280 281 3.495001 GGCTGCGAAATTCCTACATCTAC 59.505 47.826 0.00 0.00 0.00 2.59
281 282 3.495001 GCTGCGAAATTCCTACATCTACC 59.505 47.826 0.00 0.00 0.00 3.18
282 283 4.693283 CTGCGAAATTCCTACATCTACCA 58.307 43.478 0.00 0.00 0.00 3.25
283 284 4.439057 TGCGAAATTCCTACATCTACCAC 58.561 43.478 0.00 0.00 0.00 4.16
284 285 3.808174 GCGAAATTCCTACATCTACCACC 59.192 47.826 0.00 0.00 0.00 4.61
285 286 4.377897 CGAAATTCCTACATCTACCACCC 58.622 47.826 0.00 0.00 0.00 4.61
286 287 4.715713 GAAATTCCTACATCTACCACCCC 58.284 47.826 0.00 0.00 0.00 4.95
287 288 3.726837 ATTCCTACATCTACCACCCCT 57.273 47.619 0.00 0.00 0.00 4.79
288 289 3.502051 TTCCTACATCTACCACCCCTT 57.498 47.619 0.00 0.00 0.00 3.95
289 290 4.630382 TTCCTACATCTACCACCCCTTA 57.370 45.455 0.00 0.00 0.00 2.69
306 307 4.036852 CCCCTTAAAATTTCAGCTCGATCC 59.963 45.833 0.00 0.00 0.00 3.36
311 312 0.249073 ATTTCAGCTCGATCCGACCG 60.249 55.000 0.00 0.00 0.00 4.79
345 346 1.680522 AACCTCCGATGAGCGCATCT 61.681 55.000 25.04 6.13 46.96 2.90
358 359 4.274214 TGAGCGCATCTATTTTTGGATCTG 59.726 41.667 11.47 0.00 0.00 2.90
371 372 0.796312 GGATCTGTTTTCTGCGCGAA 59.204 50.000 12.10 0.00 0.00 4.70
375 376 2.409012 TCTGTTTTCTGCGCGAATACA 58.591 42.857 24.14 24.14 39.97 2.29
386 387 1.658994 GCGAATACAAATCCGACCCA 58.341 50.000 0.00 0.00 0.00 4.51
393 394 2.227194 ACAAATCCGACCCAAGTTCAC 58.773 47.619 0.00 0.00 0.00 3.18
399 400 1.202770 CCGACCCAAGTTCACCTTTCT 60.203 52.381 0.00 0.00 0.00 2.52
404 405 5.313712 GACCCAAGTTCACCTTTCTTCATA 58.686 41.667 0.00 0.00 0.00 2.15
410 411 5.617252 AGTTCACCTTTCTTCATAAACGGA 58.383 37.500 0.00 0.00 0.00 4.69
517 518 7.474190 CATGCAATTCAAGAAAAACAACCTTT 58.526 30.769 0.00 0.00 0.00 3.11
587 588 6.197096 GCGGATCATTCATAAAACATGTTGTC 59.803 38.462 12.82 0.00 0.00 3.18
590 591 8.199449 GGATCATTCATAAAACATGTTGTCCAT 58.801 33.333 12.82 0.00 0.00 3.41
619 620 2.098614 TGTCTTTTTGGCTGCAGTTGA 58.901 42.857 16.64 0.00 0.00 3.18
623 624 5.709631 TGTCTTTTTGGCTGCAGTTGATATA 59.290 36.000 16.64 0.00 0.00 0.86
624 625 6.030228 GTCTTTTTGGCTGCAGTTGATATAC 58.970 40.000 16.64 2.03 0.00 1.47
626 627 1.581934 TGGCTGCAGTTGATATACGC 58.418 50.000 16.64 0.00 0.00 4.42
627 628 1.138859 TGGCTGCAGTTGATATACGCT 59.861 47.619 16.64 0.00 0.00 5.07
672 675 7.032598 AGATTTGGATCCTTTTCTCAGGTAA 57.967 36.000 14.23 0.00 35.15 2.85
701 704 7.121974 TGTTTGATTTTCTCAGAATCTCGAC 57.878 36.000 0.00 0.00 34.68 4.20
806 2383 7.934120 AGAATGTACTAGACAAACTTGAAAGCT 59.066 33.333 0.00 0.00 42.78 3.74
940 2518 6.405397 GCCGATAAAGAATGGAAAGGCTAAAA 60.405 38.462 0.00 0.00 39.01 1.52
1323 2901 2.786578 TGCGCGTTTCTTGTTTGATTTC 59.213 40.909 8.43 0.00 0.00 2.17
1324 2902 2.786578 GCGCGTTTCTTGTTTGATTTCA 59.213 40.909 8.43 0.00 0.00 2.69
1325 2903 3.121696 GCGCGTTTCTTGTTTGATTTCAG 60.122 43.478 8.43 0.00 0.00 3.02
1326 2904 4.035017 CGCGTTTCTTGTTTGATTTCAGT 58.965 39.130 0.00 0.00 0.00 3.41
1327 2905 4.499040 CGCGTTTCTTGTTTGATTTCAGTT 59.501 37.500 0.00 0.00 0.00 3.16
1328 2906 5.004345 CGCGTTTCTTGTTTGATTTCAGTTT 59.996 36.000 0.00 0.00 0.00 2.66
1329 2907 6.453659 CGCGTTTCTTGTTTGATTTCAGTTTT 60.454 34.615 0.00 0.00 0.00 2.43
1330 2908 6.678245 GCGTTTCTTGTTTGATTTCAGTTTTG 59.322 34.615 0.00 0.00 0.00 2.44
1331 2909 6.678245 CGTTTCTTGTTTGATTTCAGTTTTGC 59.322 34.615 0.00 0.00 0.00 3.68
1332 2910 7.517321 GTTTCTTGTTTGATTTCAGTTTTGCA 58.483 30.769 0.00 0.00 0.00 4.08
1333 2911 7.846644 TTCTTGTTTGATTTCAGTTTTGCAT 57.153 28.000 0.00 0.00 0.00 3.96
1334 2912 7.236674 TCTTGTTTGATTTCAGTTTTGCATG 57.763 32.000 0.00 0.00 0.00 4.06
1335 2913 6.817641 TCTTGTTTGATTTCAGTTTTGCATGT 59.182 30.769 0.00 0.00 0.00 3.21
1336 2914 6.347270 TGTTTGATTTCAGTTTTGCATGTG 57.653 33.333 0.00 0.00 0.00 3.21
1337 2915 6.104665 TGTTTGATTTCAGTTTTGCATGTGA 58.895 32.000 0.00 0.00 0.00 3.58
1338 2916 6.035866 TGTTTGATTTCAGTTTTGCATGTGAC 59.964 34.615 0.00 0.00 0.00 3.67
1339 2917 5.259832 TGATTTCAGTTTTGCATGTGACA 57.740 34.783 0.00 0.00 0.00 3.58
1340 2918 5.845103 TGATTTCAGTTTTGCATGTGACAT 58.155 33.333 0.00 0.00 0.00 3.06
1341 2919 6.979465 TGATTTCAGTTTTGCATGTGACATA 58.021 32.000 0.00 0.00 0.00 2.29
1342 2920 7.432059 TGATTTCAGTTTTGCATGTGACATAA 58.568 30.769 0.00 0.00 0.00 1.90
1343 2921 7.595875 TGATTTCAGTTTTGCATGTGACATAAG 59.404 33.333 0.00 0.00 0.00 1.73
1344 2922 6.389830 TTCAGTTTTGCATGTGACATAAGT 57.610 33.333 0.00 0.00 0.00 2.24
1345 2923 7.503521 TTCAGTTTTGCATGTGACATAAGTA 57.496 32.000 0.00 0.00 0.00 2.24
1346 2924 7.686438 TCAGTTTTGCATGTGACATAAGTAT 57.314 32.000 0.00 0.00 0.00 2.12
1347 2925 8.109705 TCAGTTTTGCATGTGACATAAGTATT 57.890 30.769 0.00 0.00 0.00 1.89
1348 2926 8.022550 TCAGTTTTGCATGTGACATAAGTATTG 58.977 33.333 0.00 0.00 0.00 1.90
1349 2927 6.808212 AGTTTTGCATGTGACATAAGTATTGC 59.192 34.615 0.00 0.00 0.00 3.56
1350 2928 5.893897 TTGCATGTGACATAAGTATTGCA 57.106 34.783 0.00 0.04 0.00 4.08
1351 2929 6.453926 TTGCATGTGACATAAGTATTGCAT 57.546 33.333 8.36 0.00 0.00 3.96
1352 2930 7.565323 TTGCATGTGACATAAGTATTGCATA 57.435 32.000 8.36 0.00 0.00 3.14
1353 2931 7.748691 TGCATGTGACATAAGTATTGCATAT 57.251 32.000 0.00 0.00 0.00 1.78
1354 2932 7.809665 TGCATGTGACATAAGTATTGCATATC 58.190 34.615 0.00 0.00 0.00 1.63
1355 2933 7.662669 TGCATGTGACATAAGTATTGCATATCT 59.337 33.333 0.00 0.00 0.00 1.98
1356 2934 9.154847 GCATGTGACATAAGTATTGCATATCTA 57.845 33.333 0.00 0.00 0.00 1.98
1385 2963 9.904198 TCCTATGTCATTGATTTTACATTGAGA 57.096 29.630 0.00 0.00 34.54 3.27
1390 2968 9.246670 TGTCATTGATTTTACATTGAGATTCCT 57.753 29.630 0.00 0.00 33.09 3.36
1391 2969 9.512435 GTCATTGATTTTACATTGAGATTCCTG 57.488 33.333 0.00 0.00 33.09 3.86
1392 2970 9.246670 TCATTGATTTTACATTGAGATTCCTGT 57.753 29.630 0.00 0.00 0.00 4.00
1393 2971 9.297586 CATTGATTTTACATTGAGATTCCTGTG 57.702 33.333 0.00 0.00 0.00 3.66
1394 2972 7.395190 TGATTTTACATTGAGATTCCTGTGG 57.605 36.000 0.00 0.00 0.00 4.17
1395 2973 7.174413 TGATTTTACATTGAGATTCCTGTGGA 58.826 34.615 0.00 0.00 0.00 4.02
1396 2974 7.835682 TGATTTTACATTGAGATTCCTGTGGAT 59.164 33.333 0.00 0.00 0.00 3.41
1397 2975 9.342308 GATTTTACATTGAGATTCCTGTGGATA 57.658 33.333 0.00 0.00 0.00 2.59
1398 2976 9.872684 ATTTTACATTGAGATTCCTGTGGATAT 57.127 29.630 0.00 0.00 0.00 1.63
1399 2977 9.699410 TTTTACATTGAGATTCCTGTGGATATT 57.301 29.630 0.00 0.00 0.00 1.28
1400 2978 9.699410 TTTACATTGAGATTCCTGTGGATATTT 57.301 29.630 0.00 0.00 0.00 1.40
1401 2979 9.699410 TTACATTGAGATTCCTGTGGATATTTT 57.301 29.630 0.00 0.00 0.00 1.82
1402 2980 8.599624 ACATTGAGATTCCTGTGGATATTTTT 57.400 30.769 0.00 0.00 0.00 1.94
1436 3014 7.961325 TTTTTCCCTTTTATGCTTGATTCAC 57.039 32.000 0.00 0.00 0.00 3.18
1437 3015 6.916360 TTTCCCTTTTATGCTTGATTCACT 57.084 33.333 0.00 0.00 0.00 3.41
1438 3016 6.515272 TTCCCTTTTATGCTTGATTCACTC 57.485 37.500 0.00 0.00 0.00 3.51
1439 3017 5.569355 TCCCTTTTATGCTTGATTCACTCA 58.431 37.500 0.00 0.00 0.00 3.41
1440 3018 5.415701 TCCCTTTTATGCTTGATTCACTCAC 59.584 40.000 0.00 0.00 32.17 3.51
1441 3019 5.416952 CCCTTTTATGCTTGATTCACTCACT 59.583 40.000 0.00 0.00 32.17 3.41
1442 3020 6.071728 CCCTTTTATGCTTGATTCACTCACTT 60.072 38.462 0.00 0.00 32.17 3.16
1443 3021 7.121168 CCCTTTTATGCTTGATTCACTCACTTA 59.879 37.037 0.00 0.00 32.17 2.24
1444 3022 8.180267 CCTTTTATGCTTGATTCACTCACTTAG 58.820 37.037 0.00 0.00 32.17 2.18
1445 3023 8.846943 TTTTATGCTTGATTCACTCACTTAGA 57.153 30.769 0.00 0.00 32.17 2.10
1446 3024 7.834068 TTATGCTTGATTCACTCACTTAGAC 57.166 36.000 0.00 0.00 32.17 2.59
1447 3025 4.237724 TGCTTGATTCACTCACTTAGACG 58.762 43.478 0.00 0.00 32.17 4.18
1448 3026 4.238514 GCTTGATTCACTCACTTAGACGT 58.761 43.478 0.00 0.00 32.17 4.34
1449 3027 4.090642 GCTTGATTCACTCACTTAGACGTG 59.909 45.833 0.00 0.00 32.17 4.49
1450 3028 3.575630 TGATTCACTCACTTAGACGTGC 58.424 45.455 0.00 0.00 34.92 5.34
1451 3029 3.005367 TGATTCACTCACTTAGACGTGCA 59.995 43.478 0.00 0.00 34.92 4.57
1452 3030 3.446310 TTCACTCACTTAGACGTGCAA 57.554 42.857 0.00 0.00 34.92 4.08
1453 3031 3.660501 TCACTCACTTAGACGTGCAAT 57.339 42.857 0.00 0.00 34.92 3.56
1454 3032 4.776795 TCACTCACTTAGACGTGCAATA 57.223 40.909 0.00 0.00 34.92 1.90
1455 3033 5.128992 TCACTCACTTAGACGTGCAATAA 57.871 39.130 0.00 0.00 34.92 1.40
1456 3034 4.921515 TCACTCACTTAGACGTGCAATAAC 59.078 41.667 0.00 0.00 34.92 1.89
1457 3035 4.923871 CACTCACTTAGACGTGCAATAACT 59.076 41.667 0.00 0.00 34.92 2.24
1458 3036 6.072342 TCACTCACTTAGACGTGCAATAACTA 60.072 38.462 0.00 0.00 34.92 2.24
1459 3037 6.251589 CACTCACTTAGACGTGCAATAACTAG 59.748 42.308 0.00 0.00 34.92 2.57
1460 3038 6.150641 ACTCACTTAGACGTGCAATAACTAGA 59.849 38.462 0.00 0.00 34.92 2.43
1461 3039 6.552629 TCACTTAGACGTGCAATAACTAGAG 58.447 40.000 0.00 0.00 34.92 2.43
1462 3040 5.230306 CACTTAGACGTGCAATAACTAGAGC 59.770 44.000 0.00 0.00 0.00 4.09
1463 3041 3.868757 AGACGTGCAATAACTAGAGCA 57.131 42.857 0.00 0.00 34.10 4.26
1473 3051 8.146479 TGCAATAACTAGAGCACATTTAGATG 57.854 34.615 0.00 0.00 39.25 2.90
1485 3063 4.770795 ACATTTAGATGTGCCCTAGACAC 58.229 43.478 0.00 8.47 44.64 3.67
1489 3067 3.478780 TGTGCCCTAGACACACCC 58.521 61.111 12.81 0.00 42.88 4.61
1490 3068 2.264794 GTGCCCTAGACACACCCG 59.735 66.667 10.07 0.00 37.96 5.28
1491 3069 2.203728 TGCCCTAGACACACCCGT 60.204 61.111 0.00 0.00 0.00 5.28
1492 3070 1.839747 TGCCCTAGACACACCCGTT 60.840 57.895 0.00 0.00 0.00 4.44
1493 3071 1.373812 GCCCTAGACACACCCGTTT 59.626 57.895 0.00 0.00 0.00 3.60
1494 3072 0.953960 GCCCTAGACACACCCGTTTG 60.954 60.000 0.00 0.00 0.00 2.93
1495 3073 0.682852 CCCTAGACACACCCGTTTGA 59.317 55.000 0.00 0.00 0.00 2.69
1496 3074 1.278127 CCCTAGACACACCCGTTTGAT 59.722 52.381 0.00 0.00 0.00 2.57
1497 3075 2.290071 CCCTAGACACACCCGTTTGATT 60.290 50.000 0.00 0.00 0.00 2.57
1498 3076 3.408634 CCTAGACACACCCGTTTGATTT 58.591 45.455 0.00 0.00 0.00 2.17
1499 3077 4.563993 CCCTAGACACACCCGTTTGATTTA 60.564 45.833 0.00 0.00 0.00 1.40
1500 3078 5.183228 CCTAGACACACCCGTTTGATTTAT 58.817 41.667 0.00 0.00 0.00 1.40
1501 3079 6.342906 CCTAGACACACCCGTTTGATTTATA 58.657 40.000 0.00 0.00 0.00 0.98
1512 3090 9.643693 ACCCGTTTGATTTATAGGTTATATACG 57.356 33.333 0.00 0.00 0.00 3.06
1522 3100 9.884636 TTTATAGGTTATATACGACGCCTACTA 57.115 33.333 0.00 0.00 32.26 1.82
1523 3101 9.884636 TTATAGGTTATATACGACGCCTACTAA 57.115 33.333 0.00 0.00 32.26 2.24
1524 3102 8.970859 ATAGGTTATATACGACGCCTACTAAT 57.029 34.615 0.00 0.00 32.26 1.73
1525 3103 7.081526 AGGTTATATACGACGCCTACTAATG 57.918 40.000 0.00 0.00 0.00 1.90
1526 3104 5.741040 GGTTATATACGACGCCTACTAATGC 59.259 44.000 0.00 0.00 0.00 3.56
1527 3105 2.719426 ATACGACGCCTACTAATGCC 57.281 50.000 0.00 0.00 0.00 4.40
1586 3170 9.699410 ATATTGGACCTCACATCTCAAATTTTA 57.301 29.630 0.00 0.00 0.00 1.52
1634 3218 9.145865 GAAACACAGGAAAAGTTAAAATGAACA 57.854 29.630 0.00 0.00 0.00 3.18
1979 3582 7.712264 TTCTGTGGTTTCTGCATTTAAATTG 57.288 32.000 0.00 0.00 0.00 2.32
2016 3619 6.632672 GCAGGAATAGTTGAGGTTGAGGATAA 60.633 42.308 0.00 0.00 0.00 1.75
2136 3739 0.108329 ACCAGATTAGCGTCAACCGG 60.108 55.000 0.00 0.00 36.94 5.28
2153 3756 2.662866 CCGGTGAGGTACAGAGGAATA 58.337 52.381 0.00 0.00 34.51 1.75
2417 4020 5.121768 CGTTTCAGAATCTGGGAATACGTTT 59.878 40.000 10.71 0.00 31.51 3.60
2467 4076 1.942657 CATACATTGCTGGGAGGAACG 59.057 52.381 0.00 0.00 0.00 3.95
2680 4299 1.870055 CTGCGAGCAGGTTTGGCAAT 61.870 55.000 16.69 0.00 40.17 3.56
2683 4302 0.169672 CGAGCAGGTTTGGCAATGAG 59.830 55.000 0.00 0.00 0.00 2.90
2742 4428 2.244117 ATTCGATCAGGTGCAGCGGT 62.244 55.000 15.56 4.61 0.00 5.68
2777 4473 1.086634 GCTAGAGTTCCCTGCAAGCG 61.087 60.000 0.00 0.00 0.00 4.68
2947 4870 2.035066 GCCCGATATGCTTTGCTTCAAT 59.965 45.455 0.00 0.00 0.00 2.57
3027 5005 4.997395 AGATCGTAAGTGCACTTTGTGAAT 59.003 37.500 35.20 20.92 37.40 2.57
3156 5134 5.692115 TCAGCAAGGAACATGACCTATTA 57.308 39.130 14.33 0.72 36.67 0.98
3217 5195 9.921637 TTTCTCCATCCATTACAAATTTACAAC 57.078 29.630 0.00 0.00 0.00 3.32
3266 5244 3.191371 CCACTGCAGGAATCTTTTACCAC 59.809 47.826 19.93 0.00 0.00 4.16
3504 5482 2.200067 CTCCAAGCTGATGATCGTCAC 58.800 52.381 13.75 10.68 0.00 3.67
3661 5639 6.402226 GCTGTTTTCTACTTGATAAACGGGAG 60.402 42.308 0.00 0.00 35.32 4.30
3890 5868 6.596888 TGATTCTCAACAGATCATGAAGTTCC 59.403 38.462 0.00 0.00 0.00 3.62
3891 5869 5.488262 TCTCAACAGATCATGAAGTTCCA 57.512 39.130 0.00 0.00 0.00 3.53
4030 6010 6.268825 TCCTGAGTTGTTGACTATGTACTC 57.731 41.667 0.00 0.00 39.19 2.59
4055 6035 6.539826 CCACTGCACATGATTAGAACAATAGA 59.460 38.462 0.00 0.00 0.00 1.98
4056 6036 7.254692 CCACTGCACATGATTAGAACAATAGAG 60.255 40.741 0.00 0.00 0.00 2.43
4057 6037 7.279536 CACTGCACATGATTAGAACAATAGAGT 59.720 37.037 0.00 0.00 0.00 3.24
4058 6038 7.493971 ACTGCACATGATTAGAACAATAGAGTC 59.506 37.037 0.00 0.00 0.00 3.36
4074 6056 4.098914 AGAGTCTCTATGCTCCTGTAGG 57.901 50.000 0.00 0.00 32.47 3.18
4379 6364 1.409427 GGCTAGGCGATACAGAGTGTT 59.591 52.381 0.00 0.00 0.00 3.32
4400 6385 4.574674 TGAGGAGCCAAATTACAGACAT 57.425 40.909 0.00 0.00 0.00 3.06
4401 6386 4.517285 TGAGGAGCCAAATTACAGACATC 58.483 43.478 0.00 0.00 0.00 3.06
4402 6387 4.019411 TGAGGAGCCAAATTACAGACATCA 60.019 41.667 0.00 0.00 0.00 3.07
4403 6388 4.922206 AGGAGCCAAATTACAGACATCAA 58.078 39.130 0.00 0.00 0.00 2.57
4404 6389 4.946157 AGGAGCCAAATTACAGACATCAAG 59.054 41.667 0.00 0.00 0.00 3.02
4405 6390 4.439289 GGAGCCAAATTACAGACATCAAGC 60.439 45.833 0.00 0.00 0.00 4.01
4406 6391 4.081406 AGCCAAATTACAGACATCAAGCA 58.919 39.130 0.00 0.00 0.00 3.91
4407 6392 4.523943 AGCCAAATTACAGACATCAAGCAA 59.476 37.500 0.00 0.00 0.00 3.91
4408 6393 4.622740 GCCAAATTACAGACATCAAGCAAC 59.377 41.667 0.00 0.00 0.00 4.17
4409 6394 5.771469 CCAAATTACAGACATCAAGCAACA 58.229 37.500 0.00 0.00 0.00 3.33
4410 6395 6.215121 CCAAATTACAGACATCAAGCAACAA 58.785 36.000 0.00 0.00 0.00 2.83
4430 6415 7.201600 GCAACAAACAAGCAAAAGGAAATAGAA 60.202 33.333 0.00 0.00 0.00 2.10
4433 6418 8.882736 ACAAACAAGCAAAAGGAAATAGAAAAG 58.117 29.630 0.00 0.00 0.00 2.27
4481 6479 8.672815 GGCTAAAAGATATGAGATATCCAAAGC 58.327 37.037 0.00 0.00 42.03 3.51
4490 6488 6.839124 TGAGATATCCAAAGCAATGTTTGT 57.161 33.333 0.00 0.00 35.93 2.83
4504 6502 7.769719 GCAATGTTTGTTTGCAAATATGAAG 57.230 32.000 16.21 3.47 46.78 3.02
4505 6503 7.354257 GCAATGTTTGTTTGCAAATATGAAGT 58.646 30.769 16.21 0.00 46.78 3.01
4506 6504 7.321746 GCAATGTTTGTTTGCAAATATGAAGTG 59.678 33.333 16.21 11.69 46.78 3.16
4507 6505 8.336806 CAATGTTTGTTTGCAAATATGAAGTGT 58.663 29.630 16.21 0.00 42.79 3.55
4508 6506 7.840342 TGTTTGTTTGCAAATATGAAGTGTT 57.160 28.000 16.21 0.00 45.11 3.32
4509 6507 8.261492 TGTTTGTTTGCAAATATGAAGTGTTT 57.739 26.923 16.21 0.00 45.11 2.83
4510 6508 9.371136 TGTTTGTTTGCAAATATGAAGTGTTTA 57.629 25.926 16.21 0.00 45.11 2.01
4511 6509 9.848172 GTTTGTTTGCAAATATGAAGTGTTTAG 57.152 29.630 16.21 0.00 45.11 1.85
4512 6510 9.593134 TTTGTTTGCAAATATGAAGTGTTTAGT 57.407 25.926 16.21 0.00 39.43 2.24
4516 6514 8.909708 TTGCAAATATGAAGTGTTTAGTATGC 57.090 30.769 0.00 0.00 0.00 3.14
4517 6515 8.049655 TGCAAATATGAAGTGTTTAGTATGCA 57.950 30.769 0.00 0.00 0.00 3.96
4518 6516 8.685427 TGCAAATATGAAGTGTTTAGTATGCAT 58.315 29.630 3.79 3.79 0.00 3.96
4519 6517 9.520204 GCAAATATGAAGTGTTTAGTATGCATT 57.480 29.630 3.54 0.00 0.00 3.56
4554 6552 3.931907 TGGGATCCATAAGAACACCAG 57.068 47.619 15.23 0.00 0.00 4.00
4555 6553 3.189606 TGGGATCCATAAGAACACCAGT 58.810 45.455 15.23 0.00 0.00 4.00
4556 6554 3.199946 TGGGATCCATAAGAACACCAGTC 59.800 47.826 15.23 0.00 0.00 3.51
4557 6555 3.199946 GGGATCCATAAGAACACCAGTCA 59.800 47.826 15.23 0.00 0.00 3.41
4558 6556 4.141390 GGGATCCATAAGAACACCAGTCAT 60.141 45.833 15.23 0.00 0.00 3.06
4559 6557 4.818546 GGATCCATAAGAACACCAGTCATG 59.181 45.833 6.95 0.00 0.00 3.07
4560 6558 4.908601 TCCATAAGAACACCAGTCATGT 57.091 40.909 0.00 0.00 0.00 3.21
4561 6559 4.578871 TCCATAAGAACACCAGTCATGTG 58.421 43.478 0.00 0.00 39.63 3.21
4562 6560 4.285775 TCCATAAGAACACCAGTCATGTGA 59.714 41.667 0.00 0.00 37.18 3.58
4563 6561 5.045651 TCCATAAGAACACCAGTCATGTGAT 60.046 40.000 0.00 0.00 37.18 3.06
4564 6562 5.065602 CCATAAGAACACCAGTCATGTGATG 59.934 44.000 0.00 0.00 37.18 3.07
4565 6563 4.356405 AAGAACACCAGTCATGTGATGA 57.644 40.909 0.00 0.00 37.18 2.92
4641 6674 5.897377 GTGTGAAGCAACACCCTATTTAT 57.103 39.130 10.01 0.00 43.84 1.40
4642 6675 6.267496 GTGTGAAGCAACACCCTATTTATT 57.733 37.500 10.01 0.00 43.84 1.40
4643 6676 6.092748 GTGTGAAGCAACACCCTATTTATTG 58.907 40.000 10.01 0.00 43.84 1.90
4644 6677 5.102313 GTGAAGCAACACCCTATTTATTGC 58.898 41.667 0.00 0.00 44.74 3.56
4728 6808 5.836821 ACAAAACCCTTTCTCAAAGAGAC 57.163 39.130 0.00 0.00 38.51 3.36
4741 6821 5.578336 TCTCAAAGAGACAAATGATAGTGCG 59.422 40.000 0.00 0.00 33.35 5.34
4747 6827 5.687730 AGAGACAAATGATAGTGCGAATACG 59.312 40.000 0.00 0.00 42.93 3.06
4759 6839 4.976731 AGTGCGAATACGTGTAGATCAATC 59.023 41.667 0.00 0.00 41.98 2.67
4770 6850 7.255569 ACGTGTAGATCAATCGATGAACTTAA 58.744 34.615 0.00 0.00 42.54 1.85
4771 6851 7.432545 ACGTGTAGATCAATCGATGAACTTAAG 59.567 37.037 0.00 0.00 42.54 1.85
4835 6915 6.072112 TCAGAATTCCAAAACTAACAGTGC 57.928 37.500 0.65 0.00 0.00 4.40
4838 6918 1.669604 TCCAAAACTAACAGTGCGCA 58.330 45.000 5.66 5.66 0.00 6.09
4871 6951 1.866601 CGAGGAATGATATGCACGCAA 59.133 47.619 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 0.604073 TGACGGCGGATACAAGTTCA 59.396 50.000 13.24 0.00 0.00 3.18
44 45 2.126463 TCAAAGCGACGCTCGAGG 60.126 61.111 24.69 12.73 43.74 4.63
72 73 2.029470 TCAATTTCCGCACAATTCCACC 60.029 45.455 0.00 0.00 0.00 4.61
73 74 3.244976 CTCAATTTCCGCACAATTCCAC 58.755 45.455 0.00 0.00 0.00 4.02
99 100 4.319911 CGACGAAATTTTGCAGGGTTCTTA 60.320 41.667 5.27 0.00 0.00 2.10
102 103 2.287368 ACGACGAAATTTTGCAGGGTTC 60.287 45.455 0.00 0.00 0.00 3.62
136 137 5.730296 ATATCGGAGATCAACGGAGATTT 57.270 39.130 8.83 0.00 45.12 2.17
154 155 0.526662 CGACAGGGCTCCGGTATATC 59.473 60.000 0.00 0.00 30.91 1.63
170 171 1.409427 AGATTCCCGTCCAGATTCGAC 59.591 52.381 0.00 0.00 0.00 4.20
183 184 1.278127 TCCAAACTCGTCCAGATTCCC 59.722 52.381 0.00 0.00 0.00 3.97
185 186 2.003301 GCTCCAAACTCGTCCAGATTC 58.997 52.381 0.00 0.00 0.00 2.52
206 207 1.446272 GCTAGACGCTGGACACCAC 60.446 63.158 0.00 0.00 35.14 4.16
231 232 6.070656 TCAACAGTTTGATCTTCCAAAGGAT 58.929 36.000 0.00 0.00 36.79 3.24
246 247 0.602638 TCGCAGCCGATCAACAGTTT 60.603 50.000 0.00 0.00 38.82 2.66
250 251 1.130373 GAATTTCGCAGCCGATCAACA 59.870 47.619 0.00 0.00 43.97 3.33
258 259 2.565841 AGATGTAGGAATTTCGCAGCC 58.434 47.619 0.00 0.00 0.00 4.85
264 265 4.412528 AGGGGTGGTAGATGTAGGAATTTC 59.587 45.833 0.00 0.00 0.00 2.17
265 266 4.380791 AGGGGTGGTAGATGTAGGAATTT 58.619 43.478 0.00 0.00 0.00 1.82
266 267 4.022359 AGGGGTGGTAGATGTAGGAATT 57.978 45.455 0.00 0.00 0.00 2.17
267 268 3.726837 AGGGGTGGTAGATGTAGGAAT 57.273 47.619 0.00 0.00 0.00 3.01
268 269 3.502051 AAGGGGTGGTAGATGTAGGAA 57.498 47.619 0.00 0.00 0.00 3.36
269 270 4.630382 TTAAGGGGTGGTAGATGTAGGA 57.370 45.455 0.00 0.00 0.00 2.94
270 271 5.703730 TTTTAAGGGGTGGTAGATGTAGG 57.296 43.478 0.00 0.00 0.00 3.18
271 272 7.832187 TGAAATTTTAAGGGGTGGTAGATGTAG 59.168 37.037 0.00 0.00 0.00 2.74
272 273 7.700846 TGAAATTTTAAGGGGTGGTAGATGTA 58.299 34.615 0.00 0.00 0.00 2.29
273 274 6.557568 TGAAATTTTAAGGGGTGGTAGATGT 58.442 36.000 0.00 0.00 0.00 3.06
274 275 6.405842 GCTGAAATTTTAAGGGGTGGTAGATG 60.406 42.308 0.00 0.00 0.00 2.90
275 276 5.656859 GCTGAAATTTTAAGGGGTGGTAGAT 59.343 40.000 0.00 0.00 0.00 1.98
276 277 5.014202 GCTGAAATTTTAAGGGGTGGTAGA 58.986 41.667 0.00 0.00 0.00 2.59
277 278 5.016831 AGCTGAAATTTTAAGGGGTGGTAG 58.983 41.667 0.00 0.00 0.00 3.18
278 279 5.005628 AGCTGAAATTTTAAGGGGTGGTA 57.994 39.130 0.00 0.00 0.00 3.25
279 280 3.832490 GAGCTGAAATTTTAAGGGGTGGT 59.168 43.478 0.00 0.00 0.00 4.16
280 281 3.119495 CGAGCTGAAATTTTAAGGGGTGG 60.119 47.826 0.00 0.00 0.00 4.61
281 282 3.756434 TCGAGCTGAAATTTTAAGGGGTG 59.244 43.478 0.00 0.00 0.00 4.61
282 283 4.028993 TCGAGCTGAAATTTTAAGGGGT 57.971 40.909 0.00 0.00 0.00 4.95
283 284 4.036852 GGATCGAGCTGAAATTTTAAGGGG 59.963 45.833 0.00 0.00 0.00 4.79
284 285 4.260784 CGGATCGAGCTGAAATTTTAAGGG 60.261 45.833 2.56 0.00 0.00 3.95
285 286 4.570772 TCGGATCGAGCTGAAATTTTAAGG 59.429 41.667 10.33 0.00 0.00 2.69
286 287 5.493735 GTCGGATCGAGCTGAAATTTTAAG 58.506 41.667 14.86 0.00 36.23 1.85
287 288 5.464965 GTCGGATCGAGCTGAAATTTTAA 57.535 39.130 14.86 0.00 36.23 1.52
306 307 2.025418 CCCGGAGTTTGAACGGTCG 61.025 63.158 0.73 0.00 45.85 4.79
311 312 1.878088 GAGGTTTCCCGGAGTTTGAAC 59.122 52.381 0.73 0.00 35.12 3.18
339 340 7.219535 CAGAAAACAGATCCAAAAATAGATGCG 59.780 37.037 0.00 0.00 0.00 4.73
345 346 5.160641 GCGCAGAAAACAGATCCAAAAATA 58.839 37.500 0.30 0.00 0.00 1.40
358 359 3.542310 GGATTTGTATTCGCGCAGAAAAC 59.458 43.478 16.29 4.67 42.91 2.43
371 372 4.007659 GTGAACTTGGGTCGGATTTGTAT 58.992 43.478 0.00 0.00 0.00 2.29
375 376 1.423921 AGGTGAACTTGGGTCGGATTT 59.576 47.619 0.00 0.00 0.00 2.17
386 387 6.059484 TCCGTTTATGAAGAAAGGTGAACTT 58.941 36.000 0.00 0.00 42.52 2.66
393 394 8.129211 GTCCAATATTCCGTTTATGAAGAAAGG 58.871 37.037 0.00 0.00 0.00 3.11
399 400 7.931578 AGTTGTCCAATATTCCGTTTATGAA 57.068 32.000 0.00 0.00 0.00 2.57
517 518 7.015682 TGCAACCCCAGATTTTGAAACTATTTA 59.984 33.333 0.00 0.00 0.00 1.40
587 588 4.448732 GCCAAAAAGACAAGCAACTTATGG 59.551 41.667 0.00 0.00 36.84 2.74
590 591 4.681744 CAGCCAAAAAGACAAGCAACTTA 58.318 39.130 0.00 0.00 0.00 2.24
626 627 4.361451 AATTATGAAAGCTCGCCAACAG 57.639 40.909 0.00 0.00 0.00 3.16
627 628 5.182487 TCTAATTATGAAAGCTCGCCAACA 58.818 37.500 0.00 0.00 0.00 3.33
668 671 7.657336 TCTGAGAAAATCAAACAACCATTACC 58.343 34.615 0.00 0.00 37.52 2.85
672 675 8.186709 AGATTCTGAGAAAATCAAACAACCAT 57.813 30.769 0.00 0.00 37.52 3.55
701 704 6.523201 GCACCTCAAACATAATAAAAGTCACG 59.477 38.462 0.00 0.00 0.00 4.35
784 2361 6.346096 ACAGCTTTCAAGTTTGTCTAGTACA 58.654 36.000 0.00 0.00 35.88 2.90
893 2471 9.457436 TCGGCTTTCTAGTTTTTCCTATATTTT 57.543 29.630 0.00 0.00 0.00 1.82
894 2472 9.628500 ATCGGCTTTCTAGTTTTTCCTATATTT 57.372 29.630 0.00 0.00 0.00 1.40
904 2482 7.610305 TCCATTCTTTATCGGCTTTCTAGTTTT 59.390 33.333 0.00 0.00 0.00 2.43
910 2488 5.358160 CCTTTCCATTCTTTATCGGCTTTCT 59.642 40.000 0.00 0.00 0.00 2.52
940 2518 5.903923 AGTGGGGATGGAAATAGAAGTTTT 58.096 37.500 0.00 0.00 0.00 2.43
1203 2781 2.355837 GCGACGTCAGTTCCAGCA 60.356 61.111 17.16 0.00 0.00 4.41
1323 2901 7.201376 GCAATACTTATGTCACATGCAAAACTG 60.201 37.037 0.00 0.00 33.00 3.16
1324 2902 6.808212 GCAATACTTATGTCACATGCAAAACT 59.192 34.615 0.00 0.00 33.00 2.66
1325 2903 6.585702 TGCAATACTTATGTCACATGCAAAAC 59.414 34.615 0.00 0.00 39.36 2.43
1326 2904 6.685657 TGCAATACTTATGTCACATGCAAAA 58.314 32.000 0.00 0.00 39.36 2.44
1327 2905 6.264841 TGCAATACTTATGTCACATGCAAA 57.735 33.333 0.00 0.00 39.36 3.68
1328 2906 5.893897 TGCAATACTTATGTCACATGCAA 57.106 34.783 0.00 0.00 39.36 4.08
1329 2907 7.662669 AGATATGCAATACTTATGTCACATGCA 59.337 33.333 0.00 0.90 45.36 3.96
1330 2908 8.037382 AGATATGCAATACTTATGTCACATGC 57.963 34.615 0.00 0.00 0.00 4.06
1359 2937 9.904198 TCTCAATGTAAAATCAATGACATAGGA 57.096 29.630 0.00 0.00 32.31 2.94
1364 2942 9.246670 AGGAATCTCAATGTAAAATCAATGACA 57.753 29.630 0.00 0.00 0.00 3.58
1365 2943 9.512435 CAGGAATCTCAATGTAAAATCAATGAC 57.488 33.333 0.00 0.00 0.00 3.06
1366 2944 9.246670 ACAGGAATCTCAATGTAAAATCAATGA 57.753 29.630 0.00 0.00 0.00 2.57
1367 2945 9.297586 CACAGGAATCTCAATGTAAAATCAATG 57.702 33.333 0.00 0.00 0.00 2.82
1368 2946 8.472413 CCACAGGAATCTCAATGTAAAATCAAT 58.528 33.333 0.00 0.00 0.00 2.57
1369 2947 7.669304 TCCACAGGAATCTCAATGTAAAATCAA 59.331 33.333 0.00 0.00 0.00 2.57
1370 2948 7.174413 TCCACAGGAATCTCAATGTAAAATCA 58.826 34.615 0.00 0.00 0.00 2.57
1371 2949 7.630242 TCCACAGGAATCTCAATGTAAAATC 57.370 36.000 0.00 0.00 0.00 2.17
1372 2950 9.872684 ATATCCACAGGAATCTCAATGTAAAAT 57.127 29.630 0.00 0.00 34.34 1.82
1373 2951 9.699410 AATATCCACAGGAATCTCAATGTAAAA 57.301 29.630 0.00 0.00 34.34 1.52
1374 2952 9.699410 AAATATCCACAGGAATCTCAATGTAAA 57.301 29.630 0.00 0.00 34.34 2.01
1375 2953 9.699410 AAAATATCCACAGGAATCTCAATGTAA 57.301 29.630 0.00 0.00 34.34 2.41
1376 2954 9.699410 AAAAATATCCACAGGAATCTCAATGTA 57.301 29.630 0.00 0.00 34.34 2.29
1377 2955 8.599624 AAAAATATCCACAGGAATCTCAATGT 57.400 30.769 0.00 0.00 34.34 2.71
1412 2990 7.734942 AGTGAATCAAGCATAAAAGGGAAAAA 58.265 30.769 0.00 0.00 0.00 1.94
1413 2991 7.015098 TGAGTGAATCAAGCATAAAAGGGAAAA 59.985 33.333 0.00 0.00 34.02 2.29
1414 2992 6.493115 TGAGTGAATCAAGCATAAAAGGGAAA 59.507 34.615 0.00 0.00 34.02 3.13
1415 2993 6.009589 TGAGTGAATCAAGCATAAAAGGGAA 58.990 36.000 0.00 0.00 34.02 3.97
1416 2994 5.415701 GTGAGTGAATCAAGCATAAAAGGGA 59.584 40.000 0.00 0.00 40.43 4.20
1417 2995 5.416952 AGTGAGTGAATCAAGCATAAAAGGG 59.583 40.000 0.00 0.00 40.43 3.95
1418 2996 6.506500 AGTGAGTGAATCAAGCATAAAAGG 57.493 37.500 0.00 0.00 40.43 3.11
1419 2997 8.939929 TCTAAGTGAGTGAATCAAGCATAAAAG 58.060 33.333 0.00 0.00 40.43 2.27
1420 2998 8.721478 GTCTAAGTGAGTGAATCAAGCATAAAA 58.279 33.333 0.00 0.00 40.43 1.52
1421 2999 7.063426 CGTCTAAGTGAGTGAATCAAGCATAAA 59.937 37.037 0.00 0.00 40.43 1.40
1422 3000 6.531594 CGTCTAAGTGAGTGAATCAAGCATAA 59.468 38.462 0.00 0.00 40.43 1.90
1423 3001 6.036470 CGTCTAAGTGAGTGAATCAAGCATA 58.964 40.000 0.00 0.00 40.43 3.14
1424 3002 4.867047 CGTCTAAGTGAGTGAATCAAGCAT 59.133 41.667 0.00 0.00 40.43 3.79
1425 3003 4.237724 CGTCTAAGTGAGTGAATCAAGCA 58.762 43.478 0.00 0.00 40.43 3.91
1426 3004 4.090642 CACGTCTAAGTGAGTGAATCAAGC 59.909 45.833 0.00 0.00 44.43 4.01
1427 3005 4.090642 GCACGTCTAAGTGAGTGAATCAAG 59.909 45.833 0.88 0.00 44.43 3.02
1428 3006 3.987868 GCACGTCTAAGTGAGTGAATCAA 59.012 43.478 0.88 0.00 44.43 2.57
1429 3007 3.005367 TGCACGTCTAAGTGAGTGAATCA 59.995 43.478 0.88 0.00 44.43 2.57
1430 3008 3.575630 TGCACGTCTAAGTGAGTGAATC 58.424 45.455 0.88 0.00 44.43 2.52
1431 3009 3.660501 TGCACGTCTAAGTGAGTGAAT 57.339 42.857 0.88 0.00 44.43 2.57
1432 3010 3.446310 TTGCACGTCTAAGTGAGTGAA 57.554 42.857 0.88 0.00 44.43 3.18
1433 3011 3.660501 ATTGCACGTCTAAGTGAGTGA 57.339 42.857 0.88 0.00 44.43 3.41
1434 3012 4.923871 AGTTATTGCACGTCTAAGTGAGTG 59.076 41.667 0.88 0.00 44.43 3.51
1435 3013 5.135508 AGTTATTGCACGTCTAAGTGAGT 57.864 39.130 0.88 0.00 44.43 3.41
1436 3014 6.552629 TCTAGTTATTGCACGTCTAAGTGAG 58.447 40.000 0.88 0.00 44.43 3.51
1437 3015 6.505044 TCTAGTTATTGCACGTCTAAGTGA 57.495 37.500 0.88 0.00 44.43 3.41
1438 3016 5.230306 GCTCTAGTTATTGCACGTCTAAGTG 59.770 44.000 0.00 0.00 44.47 3.16
1439 3017 5.105877 TGCTCTAGTTATTGCACGTCTAAGT 60.106 40.000 0.00 0.00 0.00 2.24
1440 3018 5.230306 GTGCTCTAGTTATTGCACGTCTAAG 59.770 44.000 0.00 0.00 44.60 2.18
1441 3019 5.100259 GTGCTCTAGTTATTGCACGTCTAA 58.900 41.667 0.00 0.00 44.60 2.10
1442 3020 4.669318 GTGCTCTAGTTATTGCACGTCTA 58.331 43.478 0.00 0.00 44.60 2.59
1443 3021 3.512680 GTGCTCTAGTTATTGCACGTCT 58.487 45.455 0.00 0.00 44.60 4.18
1444 3022 3.909019 GTGCTCTAGTTATTGCACGTC 57.091 47.619 0.00 0.00 44.60 4.34
1448 3026 7.770433 ACATCTAAATGTGCTCTAGTTATTGCA 59.230 33.333 0.00 0.00 44.51 4.08
1449 3027 8.147642 ACATCTAAATGTGCTCTAGTTATTGC 57.852 34.615 0.00 0.00 44.51 3.56
1463 3041 5.858243 GTGTGTCTAGGGCACATCTAAATGT 60.858 44.000 18.92 0.00 46.66 2.71
1464 3042 4.572389 GTGTGTCTAGGGCACATCTAAATG 59.428 45.833 18.92 0.00 46.66 2.32
1465 3043 4.384208 GGTGTGTCTAGGGCACATCTAAAT 60.384 45.833 18.92 0.00 46.66 1.40
1466 3044 3.055385 GGTGTGTCTAGGGCACATCTAAA 60.055 47.826 18.92 0.00 46.66 1.85
1467 3045 2.500098 GGTGTGTCTAGGGCACATCTAA 59.500 50.000 18.92 0.00 46.66 2.10
1468 3046 2.108168 GGTGTGTCTAGGGCACATCTA 58.892 52.381 18.92 0.21 46.66 1.98
1469 3047 0.905357 GGTGTGTCTAGGGCACATCT 59.095 55.000 18.92 0.00 46.66 2.90
1470 3048 0.107654 GGGTGTGTCTAGGGCACATC 60.108 60.000 18.92 18.25 46.66 3.06
1471 3049 1.899437 CGGGTGTGTCTAGGGCACAT 61.899 60.000 18.92 0.00 46.66 3.21
1472 3050 2.579657 CGGGTGTGTCTAGGGCACA 61.580 63.158 14.22 14.22 43.60 4.57
1473 3051 2.108278 AACGGGTGTGTCTAGGGCAC 62.108 60.000 10.20 10.20 37.37 5.01
1474 3052 1.412453 AAACGGGTGTGTCTAGGGCA 61.412 55.000 0.00 0.00 0.00 5.36
1475 3053 0.953960 CAAACGGGTGTGTCTAGGGC 60.954 60.000 0.00 0.00 0.00 5.19
1476 3054 0.682852 TCAAACGGGTGTGTCTAGGG 59.317 55.000 0.00 0.00 0.00 3.53
1477 3055 2.762535 ATCAAACGGGTGTGTCTAGG 57.237 50.000 0.00 0.00 0.00 3.02
1478 3056 6.479001 CCTATAAATCAAACGGGTGTGTCTAG 59.521 42.308 0.00 0.00 0.00 2.43
1479 3057 6.070653 ACCTATAAATCAAACGGGTGTGTCTA 60.071 38.462 0.00 0.00 0.00 2.59
1480 3058 5.183228 CCTATAAATCAAACGGGTGTGTCT 58.817 41.667 0.00 0.00 0.00 3.41
1481 3059 4.939439 ACCTATAAATCAAACGGGTGTGTC 59.061 41.667 0.00 0.00 0.00 3.67
1482 3060 4.913784 ACCTATAAATCAAACGGGTGTGT 58.086 39.130 0.00 0.00 0.00 3.72
1483 3061 5.890424 AACCTATAAATCAAACGGGTGTG 57.110 39.130 0.00 0.00 0.00 3.82
1486 3064 9.643693 CGTATATAACCTATAAATCAAACGGGT 57.356 33.333 0.00 0.00 0.00 5.28
1487 3065 9.859427 TCGTATATAACCTATAAATCAAACGGG 57.141 33.333 0.00 0.00 0.00 5.28
1491 3069 9.357652 GGCGTCGTATATAACCTATAAATCAAA 57.642 33.333 0.00 0.00 0.00 2.69
1492 3070 8.742777 AGGCGTCGTATATAACCTATAAATCAA 58.257 33.333 0.00 0.00 0.00 2.57
1493 3071 8.284945 AGGCGTCGTATATAACCTATAAATCA 57.715 34.615 0.00 0.00 0.00 2.57
1494 3072 9.657121 GTAGGCGTCGTATATAACCTATAAATC 57.343 37.037 0.00 0.00 32.69 2.17
1495 3073 9.401058 AGTAGGCGTCGTATATAACCTATAAAT 57.599 33.333 0.00 0.00 32.69 1.40
1496 3074 8.792830 AGTAGGCGTCGTATATAACCTATAAA 57.207 34.615 0.00 0.00 32.69 1.40
1497 3075 9.884636 TTAGTAGGCGTCGTATATAACCTATAA 57.115 33.333 0.00 0.00 32.69 0.98
1499 3077 8.834465 CATTAGTAGGCGTCGTATATAACCTAT 58.166 37.037 0.00 0.00 32.69 2.57
1500 3078 7.201644 GCATTAGTAGGCGTCGTATATAACCTA 60.202 40.741 0.00 0.00 0.00 3.08
1501 3079 6.404074 GCATTAGTAGGCGTCGTATATAACCT 60.404 42.308 0.00 0.00 0.00 3.50
1512 3090 2.561569 ACATTGGCATTAGTAGGCGTC 58.438 47.619 0.00 0.00 30.13 5.19
1526 3104 4.272018 CGAGAGATTAGCCAGAAACATTGG 59.728 45.833 0.00 0.00 38.78 3.16
1527 3105 4.260538 GCGAGAGATTAGCCAGAAACATTG 60.261 45.833 0.00 0.00 0.00 2.82
1586 3170 5.407502 TCAATCGTGTCTACATCAAATCGT 58.592 37.500 0.00 0.00 0.00 3.73
1670 3254 9.762933 AAAACATGACACTTAAATGTGCTAAAT 57.237 25.926 0.00 0.00 41.30 1.40
1759 3354 4.591072 TGTAAAAGGGGCAAACAAAGCTAT 59.409 37.500 0.00 0.00 0.00 2.97
1979 3582 3.877508 ACTATTCCTGCGAAAACCATAGC 59.122 43.478 0.00 0.00 0.00 2.97
2016 3619 5.620206 TCCAACAGACAAACTATGACATGT 58.380 37.500 0.00 0.00 0.00 3.21
2053 3656 4.219725 GCAAGTATGGAAAGTTGCCCTTAA 59.780 41.667 0.00 0.00 45.86 1.85
2136 3739 6.909550 ATCAGATATTCCTCTGTACCTCAC 57.090 41.667 1.41 0.00 42.68 3.51
2153 3756 9.722184 CATTGTAATGAGATCCACTTATCAGAT 57.278 33.333 0.00 0.00 38.70 2.90
2417 4020 2.238646 AGTTGAGTGGAGTTGACAACCA 59.761 45.455 14.72 4.06 40.77 3.67
2467 4076 1.949525 TCAGCTGCTTTTTCTGGTCAC 59.050 47.619 9.47 0.00 0.00 3.67
2627 4238 0.749649 CGATAGCTGACAGGCTCCTT 59.250 55.000 4.26 0.00 42.97 3.36
2680 4299 1.483595 CCTCAGCCACTTGTCCCTCA 61.484 60.000 0.00 0.00 0.00 3.86
2683 4302 1.566298 ATCCCTCAGCCACTTGTCCC 61.566 60.000 0.00 0.00 0.00 4.46
2777 4473 1.377333 CCGACTCCCCCTTTTCAGC 60.377 63.158 0.00 0.00 0.00 4.26
2931 4701 6.588756 CACACTTGAATTGAAGCAAAGCATAT 59.411 34.615 4.41 0.00 0.00 1.78
2932 4702 5.921976 CACACTTGAATTGAAGCAAAGCATA 59.078 36.000 4.41 0.00 0.00 3.14
3027 5005 0.178967 TGATGCTGGGTTGGCAAGAA 60.179 50.000 0.00 0.00 43.14 2.52
3156 5134 7.004691 ACTCTTAATAGTGGCTCAAAACCTTT 58.995 34.615 0.00 0.00 0.00 3.11
3266 5244 5.521906 TCTCTCTTCCTCGGTTGATAATG 57.478 43.478 0.00 0.00 0.00 1.90
3306 5284 1.876497 GCTGCCCATTTCTCGCCAAA 61.876 55.000 0.00 0.00 0.00 3.28
3504 5482 9.726232 GTTGTTTTTAAAGGTAACACTTCCTAG 57.274 33.333 3.91 0.00 41.41 3.02
3661 5639 4.511826 CCGTGCAAGGATTCTAATAAGGTC 59.488 45.833 14.14 0.00 0.00 3.85
3890 5868 8.302965 TGAGCTATGATTCATCTTCGTTTATG 57.697 34.615 1.55 0.00 0.00 1.90
3891 5869 8.768955 GTTGAGCTATGATTCATCTTCGTTTAT 58.231 33.333 1.55 0.00 0.00 1.40
4030 6010 5.571784 ATTGTTCTAATCATGTGCAGTGG 57.428 39.130 0.00 0.00 0.00 4.00
4055 6035 2.754867 GCCCTACAGGAGCATAGAGACT 60.755 54.545 0.00 0.00 38.24 3.24
4056 6036 1.616374 GCCCTACAGGAGCATAGAGAC 59.384 57.143 0.00 0.00 38.24 3.36
4057 6037 1.217942 TGCCCTACAGGAGCATAGAGA 59.782 52.381 7.18 0.00 36.78 3.10
4058 6038 1.709578 TGCCCTACAGGAGCATAGAG 58.290 55.000 7.18 0.00 36.78 2.43
4204 6186 5.186198 AGAACAGTTGGCTATATTGTCACC 58.814 41.667 0.00 0.00 0.00 4.02
4212 6194 6.442564 TCTTTCCCTAAGAACAGTTGGCTATA 59.557 38.462 0.00 0.00 39.90 1.31
4332 6317 3.972502 GGCTTTATTTATAAAGTGGCGCG 59.027 43.478 18.51 0.00 46.78 6.86
4379 6364 4.019411 TGATGTCTGTAATTTGGCTCCTCA 60.019 41.667 0.00 0.00 0.00 3.86
4400 6385 3.683822 CCTTTTGCTTGTTTGTTGCTTGA 59.316 39.130 0.00 0.00 0.00 3.02
4401 6386 3.683822 TCCTTTTGCTTGTTTGTTGCTTG 59.316 39.130 0.00 0.00 0.00 4.01
4402 6387 3.936564 TCCTTTTGCTTGTTTGTTGCTT 58.063 36.364 0.00 0.00 0.00 3.91
4403 6388 3.608316 TCCTTTTGCTTGTTTGTTGCT 57.392 38.095 0.00 0.00 0.00 3.91
4404 6389 4.676849 TTTCCTTTTGCTTGTTTGTTGC 57.323 36.364 0.00 0.00 0.00 4.17
4405 6390 7.769272 TCTATTTCCTTTTGCTTGTTTGTTG 57.231 32.000 0.00 0.00 0.00 3.33
4406 6391 8.785329 TTTCTATTTCCTTTTGCTTGTTTGTT 57.215 26.923 0.00 0.00 0.00 2.83
4407 6392 8.785329 TTTTCTATTTCCTTTTGCTTGTTTGT 57.215 26.923 0.00 0.00 0.00 2.83
4408 6393 8.882736 ACTTTTCTATTTCCTTTTGCTTGTTTG 58.117 29.630 0.00 0.00 0.00 2.93
4430 6415 7.920682 CCTTTGTTTGTATCTTGTGCTTACTTT 59.079 33.333 0.00 0.00 0.00 2.66
4433 6418 5.629435 GCCTTTGTTTGTATCTTGTGCTTAC 59.371 40.000 0.00 0.00 0.00 2.34
4490 6488 9.352784 GCATACTAAACACTTCATATTTGCAAA 57.647 29.630 15.44 15.44 0.00 3.68
4503 6501 9.836864 TCATCAATCTAATGCATACTAAACACT 57.163 29.630 0.00 0.00 0.00 3.55
4510 6508 8.041919 CCATCTCTCATCAATCTAATGCATACT 58.958 37.037 0.00 0.00 0.00 2.12
4511 6509 7.280428 CCCATCTCTCATCAATCTAATGCATAC 59.720 40.741 0.00 0.00 0.00 2.39
4512 6510 7.181485 TCCCATCTCTCATCAATCTAATGCATA 59.819 37.037 0.00 0.00 0.00 3.14
4513 6511 6.012771 TCCCATCTCTCATCAATCTAATGCAT 60.013 38.462 0.00 0.00 0.00 3.96
4514 6512 5.308759 TCCCATCTCTCATCAATCTAATGCA 59.691 40.000 0.00 0.00 0.00 3.96
4515 6513 5.802465 TCCCATCTCTCATCAATCTAATGC 58.198 41.667 0.00 0.00 0.00 3.56
4516 6514 7.049133 GGATCCCATCTCTCATCAATCTAATG 58.951 42.308 0.00 0.00 0.00 1.90
4517 6515 6.734281 TGGATCCCATCTCTCATCAATCTAAT 59.266 38.462 9.90 0.00 0.00 1.73
4518 6516 6.086775 TGGATCCCATCTCTCATCAATCTAA 58.913 40.000 9.90 0.00 0.00 2.10
4519 6517 5.658474 TGGATCCCATCTCTCATCAATCTA 58.342 41.667 9.90 0.00 0.00 1.98
4520 6518 4.500452 TGGATCCCATCTCTCATCAATCT 58.500 43.478 9.90 0.00 0.00 2.40
4521 6519 4.904895 TGGATCCCATCTCTCATCAATC 57.095 45.455 9.90 0.00 0.00 2.67
4522 6520 6.734281 TCTTATGGATCCCATCTCTCATCAAT 59.266 38.462 9.90 0.00 40.74 2.57
4523 6521 6.086775 TCTTATGGATCCCATCTCTCATCAA 58.913 40.000 9.90 0.00 40.74 2.57
4524 6522 5.658474 TCTTATGGATCCCATCTCTCATCA 58.342 41.667 9.90 0.00 40.74 3.07
4525 6523 6.013898 TGTTCTTATGGATCCCATCTCTCATC 60.014 42.308 9.90 0.00 40.74 2.92
4554 6552 1.674441 CCACTGCCATCATCACATGAC 59.326 52.381 0.00 0.00 43.01 3.06
4555 6553 2.020181 GCCACTGCCATCATCACATGA 61.020 52.381 0.00 0.00 44.55 3.07
4556 6554 0.384309 GCCACTGCCATCATCACATG 59.616 55.000 0.00 0.00 0.00 3.21
4557 6555 1.099295 CGCCACTGCCATCATCACAT 61.099 55.000 0.00 0.00 0.00 3.21
4558 6556 1.746239 CGCCACTGCCATCATCACA 60.746 57.895 0.00 0.00 0.00 3.58
4559 6557 2.475466 CCGCCACTGCCATCATCAC 61.475 63.158 0.00 0.00 0.00 3.06
4560 6558 2.124612 CCGCCACTGCCATCATCA 60.125 61.111 0.00 0.00 0.00 3.07
4561 6559 1.890979 CTCCGCCACTGCCATCATC 60.891 63.158 0.00 0.00 0.00 2.92
4562 6560 2.191375 CTCCGCCACTGCCATCAT 59.809 61.111 0.00 0.00 0.00 2.45
4563 6561 4.783621 GCTCCGCCACTGCCATCA 62.784 66.667 0.00 0.00 0.00 3.07
4592 6625 2.128771 AAAGCTTCGCATACCCATGT 57.871 45.000 0.00 0.00 34.40 3.21
4633 6666 7.156876 TGAAGACCTTGTTGCAATAAATAGG 57.843 36.000 10.01 10.02 0.00 2.57
4637 6670 9.995003 AAATATTGAAGACCTTGTTGCAATAAA 57.005 25.926 10.01 3.94 33.54 1.40
4638 6671 9.995003 AAAATATTGAAGACCTTGTTGCAATAA 57.005 25.926 0.59 5.23 33.54 1.40
4639 6672 9.421806 CAAAATATTGAAGACCTTGTTGCAATA 57.578 29.630 0.59 0.00 38.94 1.90
4641 6674 7.271511 ACAAAATATTGAAGACCTTGTTGCAA 58.728 30.769 0.00 0.00 38.94 4.08
4642 6675 6.815089 ACAAAATATTGAAGACCTTGTTGCA 58.185 32.000 0.00 0.00 38.94 4.08
4643 6676 7.713764 AACAAAATATTGAAGACCTTGTTGC 57.286 32.000 10.04 0.00 38.94 4.17
4728 6808 5.389642 ACACGTATTCGCACTATCATTTG 57.610 39.130 0.00 0.00 41.18 2.32
4741 6821 7.591795 AGTTCATCGATTGATCTACACGTATTC 59.408 37.037 0.00 0.00 33.52 1.75
4747 6827 7.169982 CCCTTAAGTTCATCGATTGATCTACAC 59.830 40.741 0.00 0.00 34.05 2.90
4820 6900 2.483583 TTGCGCACTGTTAGTTTTGG 57.516 45.000 11.12 0.00 0.00 3.28
4830 6910 0.247814 CTAATCGGCTTTGCGCACTG 60.248 55.000 11.12 7.08 41.67 3.66
4835 6915 2.094126 CTCGGCTAATCGGCTTTGCG 62.094 60.000 0.00 0.00 36.59 4.85
4838 6918 0.539986 TTCCTCGGCTAATCGGCTTT 59.460 50.000 0.00 0.00 35.72 3.51
4844 6924 4.331168 GTGCATATCATTCCTCGGCTAATC 59.669 45.833 0.00 0.00 0.00 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.