Multiple sequence alignment - TraesCS5D01G116800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G116800 chr5D 100.000 8058 0 0 1 8058 137969598 137977655 0.000000e+00 14881.0
1 TraesCS5D01G116800 chr5D 84.918 915 121 12 1 903 23120152 23119243 0.000000e+00 909.0
2 TraesCS5D01G116800 chr5D 82.769 325 38 8 3836 4156 423490931 423490621 2.870000e-69 274.0
3 TraesCS5D01G116800 chr5D 90.196 102 4 2 5410 5508 137975105 137975007 2.360000e-25 128.0
4 TraesCS5D01G116800 chr5D 87.143 70 5 2 7681 7750 112949346 112949281 8.670000e-10 76.8
5 TraesCS5D01G116800 chr5B 96.915 6224 139 24 1320 7522 187042275 187048466 0.000000e+00 10381.0
6 TraesCS5D01G116800 chr5B 96.018 904 34 2 1 903 62980009 62979107 0.000000e+00 1469.0
7 TraesCS5D01G116800 chr5B 81.992 944 122 25 1 903 10543412 10542476 0.000000e+00 758.0
8 TraesCS5D01G116800 chr5B 95.465 419 18 1 904 1322 187040803 187041220 0.000000e+00 667.0
9 TraesCS5D01G116800 chr5B 92.143 140 7 4 7648 7785 187048830 187048967 2.290000e-45 195.0
10 TraesCS5D01G116800 chr5B 78.977 176 33 3 730 903 78741587 78741414 5.110000e-22 117.0
11 TraesCS5D01G116800 chr5B 85.859 99 0 1 5410 5508 187046448 187046364 8.610000e-15 93.5
12 TraesCS5D01G116800 chr5B 84.286 70 8 2 7683 7752 123692766 123692700 1.880000e-06 65.8
13 TraesCS5D01G116800 chr5B 100.000 30 0 0 5383 5412 712464222 712464193 1.000000e-03 56.5
14 TraesCS5D01G116800 chr5B 100.000 29 0 0 7530 7558 187048489 187048517 4.000000e-03 54.7
15 TraesCS5D01G116800 chr5A 93.695 4409 147 39 904 5242 185654260 185649913 0.000000e+00 6481.0
16 TraesCS5D01G116800 chr5A 95.136 1254 41 8 6280 7523 185649009 185647766 0.000000e+00 1960.0
17 TraesCS5D01G116800 chr5A 87.591 959 62 13 5284 6240 185649912 185649009 0.000000e+00 1059.0
18 TraesCS5D01G116800 chr5A 96.094 128 4 1 7659 7785 185646985 185646858 2.950000e-49 207.0
19 TraesCS5D01G116800 chr5A 85.859 99 0 1 5410 5508 185649702 185649786 8.610000e-15 93.5
20 TraesCS5D01G116800 chr5A 94.118 51 3 0 7600 7650 185647495 185647445 2.410000e-10 78.7
21 TraesCS5D01G116800 chr5A 95.238 42 2 0 7561 7602 185647558 185647517 5.220000e-07 67.6
22 TraesCS5D01G116800 chr7B 95.796 904 34 3 1 903 680106957 680106057 0.000000e+00 1456.0
23 TraesCS5D01G116800 chr2B 94.696 905 37 5 1 904 797235212 797234318 0.000000e+00 1395.0
24 TraesCS5D01G116800 chr2B 81.092 476 46 16 3706 4146 172222000 172222466 2.790000e-89 340.0
25 TraesCS5D01G116800 chr2B 88.123 261 23 7 3889 4146 404165418 404165163 3.650000e-78 303.0
26 TraesCS5D01G116800 chr2B 80.682 176 32 2 730 904 429647841 429648015 1.410000e-27 135.0
27 TraesCS5D01G116800 chr4B 96.585 615 19 2 1 614 563218362 563217749 0.000000e+00 1018.0
28 TraesCS5D01G116800 chr4B 94.444 252 14 0 653 904 563216757 563216506 9.810000e-104 388.0
29 TraesCS5D01G116800 chr4B 88.489 278 32 0 7781 8058 575529027 575529304 3.600000e-88 337.0
30 TraesCS5D01G116800 chr4B 94.483 145 8 0 608 752 563216893 563216749 2.930000e-54 224.0
31 TraesCS5D01G116800 chr6A 95.540 583 26 0 317 899 532005924 532006506 0.000000e+00 933.0
32 TraesCS5D01G116800 chr6A 95.224 335 14 2 1 334 532005574 532005907 5.540000e-146 529.0
33 TraesCS5D01G116800 chr6A 100.000 30 0 0 5383 5412 57689011 57689040 1.000000e-03 56.5
34 TraesCS5D01G116800 chr6A 100.000 30 0 0 5383 5412 593681167 593681196 1.000000e-03 56.5
35 TraesCS5D01G116800 chr2D 90.419 668 48 6 87 752 610172780 610173433 0.000000e+00 865.0
36 TraesCS5D01G116800 chr2D 87.179 312 30 9 3839 4146 336510844 336510539 5.990000e-91 346.0
37 TraesCS5D01G116800 chr2D 81.224 474 42 24 3706 4146 119835442 119835901 1.000000e-88 339.0
38 TraesCS5D01G116800 chr2D 86.306 314 38 4 3836 4146 113489353 113489664 3.600000e-88 337.0
39 TraesCS5D01G116800 chr3A 80.922 781 99 28 1 741 199129482 199128712 9.070000e-159 571.0
40 TraesCS5D01G116800 chr7A 94.964 278 14 0 7781 8058 680537818 680537541 3.450000e-118 436.0
41 TraesCS5D01G116800 chr7D 94.604 278 15 0 7781 8058 589080341 589080618 1.610000e-116 431.0
42 TraesCS5D01G116800 chr3D 88.172 279 31 2 7781 8058 389173257 389172980 1.680000e-86 331.0
43 TraesCS5D01G116800 chr3D 83.333 108 3 2 5402 5508 515667214 515667307 1.440000e-12 86.1
44 TraesCS5D01G116800 chr3D 100.000 31 0 0 5383 5413 365528574 365528604 3.140000e-04 58.4
45 TraesCS5D01G116800 chr3D 100.000 30 0 0 5383 5412 100548355 100548384 1.000000e-03 56.5
46 TraesCS5D01G116800 chr3B 87.770 278 34 0 7781 8058 691740316 691740593 7.800000e-85 326.0
47 TraesCS5D01G116800 chr3B 86.331 278 31 5 7781 8058 566599811 566600081 6.110000e-76 296.0
48 TraesCS5D01G116800 chr3B 85.612 278 37 1 7781 8058 555205032 555205306 1.020000e-73 289.0
49 TraesCS5D01G116800 chr3B 83.942 137 12 4 5285 5412 173117453 173117318 1.100000e-23 122.0
50 TraesCS5D01G116800 chr1B 87.814 279 32 2 7781 8058 491433327 491433050 7.800000e-85 326.0
51 TraesCS5D01G116800 chr1B 81.481 162 26 4 745 904 433635676 433635835 6.560000e-26 130.0
52 TraesCS5D01G116800 chr1B 98.039 51 1 0 5401 5451 332842640 332842690 1.110000e-13 89.8
53 TraesCS5D01G116800 chr1B 100.000 42 0 0 5467 5508 332842690 332842649 2.410000e-10 78.7
54 TraesCS5D01G116800 chr2A 84.615 312 34 10 3839 4146 446670452 446670151 1.700000e-76 298.0
55 TraesCS5D01G116800 chr2A 85.199 277 31 6 3848 4116 31879614 31879340 7.970000e-70 276.0
56 TraesCS5D01G116800 chr2A 89.720 107 11 0 3598 3704 122148135 122148241 3.920000e-28 137.0
57 TraesCS5D01G116800 chr6D 85.714 133 10 4 3571 3703 399014266 399014389 1.820000e-26 132.0
58 TraesCS5D01G116800 chr6D 84.348 115 11 7 759 870 411764141 411764251 1.110000e-18 106.0
59 TraesCS5D01G116800 chr6B 74.806 258 61 4 7796 8049 16387817 16387560 6.610000e-21 113.0
60 TraesCS5D01G116800 chr4A 90.323 62 2 4 5410 5467 87973928 87973989 2.410000e-10 78.7
61 TraesCS5D01G116800 chr4A 90.323 62 2 2 5410 5467 87974003 87973942 2.410000e-10 78.7
62 TraesCS5D01G116800 chr4A 97.727 44 1 0 5466 5509 356552341 356552384 8.670000e-10 76.8
63 TraesCS5D01G116800 chr1D 94.118 51 3 0 5401 5451 241224622 241224572 2.410000e-10 78.7
64 TraesCS5D01G116800 chr1D 86.667 60 7 1 5453 5511 356335574 356335633 1.880000e-06 65.8
65 TraesCS5D01G116800 chr1A 94.118 51 3 0 5401 5451 306109356 306109306 2.410000e-10 78.7
66 TraesCS5D01G116800 chr1A 93.878 49 2 1 5247 5295 313910274 313910227 1.120000e-08 73.1
67 TraesCS5D01G116800 chr1A 100.000 30 0 0 5383 5412 566430590 566430619 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G116800 chr5D 137969598 137977655 8057 False 14881.000000 14881 100.000000 1 8058 1 chr5D.!!$F1 8057
1 TraesCS5D01G116800 chr5D 23119243 23120152 909 True 909.000000 909 84.918000 1 903 1 chr5D.!!$R1 902
2 TraesCS5D01G116800 chr5B 187040803 187048967 8164 False 2824.425000 10381 96.130750 904 7785 4 chr5B.!!$F1 6881
3 TraesCS5D01G116800 chr5B 62979107 62980009 902 True 1469.000000 1469 96.018000 1 903 1 chr5B.!!$R2 902
4 TraesCS5D01G116800 chr5B 10542476 10543412 936 True 758.000000 758 81.992000 1 903 1 chr5B.!!$R1 902
5 TraesCS5D01G116800 chr5A 185646858 185654260 7402 True 1642.216667 6481 93.645333 904 7785 6 chr5A.!!$R1 6881
6 TraesCS5D01G116800 chr7B 680106057 680106957 900 True 1456.000000 1456 95.796000 1 903 1 chr7B.!!$R1 902
7 TraesCS5D01G116800 chr2B 797234318 797235212 894 True 1395.000000 1395 94.696000 1 904 1 chr2B.!!$R2 903
8 TraesCS5D01G116800 chr4B 563216506 563218362 1856 True 543.333333 1018 95.170667 1 904 3 chr4B.!!$R1 903
9 TraesCS5D01G116800 chr6A 532005574 532006506 932 False 731.000000 933 95.382000 1 899 2 chr6A.!!$F3 898
10 TraesCS5D01G116800 chr2D 610172780 610173433 653 False 865.000000 865 90.419000 87 752 1 chr2D.!!$F3 665
11 TraesCS5D01G116800 chr3A 199128712 199129482 770 True 571.000000 571 80.922000 1 741 1 chr3A.!!$R1 740

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
614 689 0.318441 CACAGAGCAGAACGGGAGAA 59.682 55.000 0.00 0.0 0.00 2.87 F
1135 2197 0.389391 CGGTTCTCGATATGGCTGGT 59.611 55.000 0.00 0.0 42.43 4.00 F
1652 3772 0.250901 ATCAAGGGTGCTCGTGCTTT 60.251 50.000 11.19 0.0 40.48 3.51 F
2641 4780 0.971386 CAAATTTGGCTGAGGTGGCT 59.029 50.000 10.49 0.0 0.00 4.75 F
3185 5332 3.596214 TCCTCGGTTTGAAGACATAAGC 58.404 45.455 0.00 0.0 0.00 3.09 F
4964 7146 0.688087 ACCTCCTAGCACCTGTAGCC 60.688 60.000 0.00 0.0 0.00 3.93 F
5898 8084 0.878523 CCTTGTGCGGTCGAACAGAA 60.879 55.000 0.00 0.0 34.74 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1652 3772 0.179150 GTCCGTTTGTTGCACAGCAA 60.179 50.000 0.0 0.0 46.80 3.91 R
2263 4402 1.459592 CGCTGGTCTGGTTTTAGAACG 59.540 52.381 0.0 0.0 37.20 3.95 R
3626 5776 0.102481 CGTGGGAAGATCCGTCGATT 59.898 55.000 0.0 0.0 37.43 3.34 R
3756 5906 4.857871 TTGATTTGTCGTGTATGCTAGC 57.142 40.909 8.1 8.1 0.00 3.42 R
5150 7336 0.734889 CGTGTCCCCGTACTCGTATT 59.265 55.000 0.0 0.0 33.08 1.89 R
6903 9101 0.842030 ATTGACAGCCCCAGGTCTCA 60.842 55.000 0.0 0.0 35.11 3.27 R
7890 10935 0.039617 TTCTGGCCGTCGCAAAATTG 60.040 50.000 0.0 0.0 36.38 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
124 126 1.368641 CTGCGACGGAATTTGGATGA 58.631 50.000 0.00 0.00 0.00 2.92
233 269 5.132897 TGTGAAAATAGGCACATTTGACC 57.867 39.130 0.00 0.00 39.86 4.02
282 318 7.168972 CCGATTTTAAAGATGTTGCAGTTGAAA 59.831 33.333 0.00 0.00 0.00 2.69
450 525 1.774110 ACAGTGCAAAACCACCATGA 58.226 45.000 0.00 0.00 36.38 3.07
588 663 9.378551 CCTATTTCATACTTGCTAACAACACTA 57.621 33.333 0.00 0.00 0.00 2.74
614 689 0.318441 CACAGAGCAGAACGGGAGAA 59.682 55.000 0.00 0.00 0.00 2.87
692 1724 1.176527 CCATCCAAACTCCGTTGCAT 58.823 50.000 0.00 0.00 0.00 3.96
701 1733 2.749044 CCGTTGCATCAGCTGGCT 60.749 61.111 15.13 0.00 42.74 4.75
864 1926 5.673337 TTTCAGAGATGGTCTTTTTCGTG 57.327 39.130 0.00 0.00 30.64 4.35
981 2043 1.136110 CCAACACACCCCAACAAAGAC 59.864 52.381 0.00 0.00 0.00 3.01
1119 2181 0.978146 CCTTCCCCATCTCTGTCGGT 60.978 60.000 0.00 0.00 0.00 4.69
1135 2197 0.389391 CGGTTCTCGATATGGCTGGT 59.611 55.000 0.00 0.00 42.43 4.00
1154 2216 1.603739 GTGCCTCCTTGGTGGGTTC 60.604 63.158 9.48 0.00 38.35 3.62
1246 2309 8.375506 TGGATTATTAGAGATGGCGTTCTTATT 58.624 33.333 0.00 0.00 0.00 1.40
1415 3535 7.558161 TGCAGTTACTAGCGACTAATTACTA 57.442 36.000 0.00 0.00 0.00 1.82
1486 3606 1.881973 TGCTTCTTGCTGGTGAATGTC 59.118 47.619 0.00 0.00 43.37 3.06
1570 3690 3.130340 ACATTGTTCGACCAAGTTGCTTT 59.870 39.130 0.90 0.00 0.00 3.51
1571 3691 4.336993 ACATTGTTCGACCAAGTTGCTTTA 59.663 37.500 0.90 0.00 0.00 1.85
1625 3745 7.712797 TGGATTTACTCCTTTTGAACTGTTTC 58.287 34.615 0.00 0.00 45.21 2.78
1630 3750 4.159693 ACTCCTTTTGAACTGTTTCCCAAC 59.840 41.667 0.00 0.00 0.00 3.77
1646 3766 2.009774 CCAACTTATCAAGGGTGCTCG 58.990 52.381 0.00 0.00 0.00 5.03
1652 3772 0.250901 ATCAAGGGTGCTCGTGCTTT 60.251 50.000 11.19 0.00 40.48 3.51
1684 3804 4.429108 ACAAACGGACCAAACATTTTCAG 58.571 39.130 0.00 0.00 0.00 3.02
1731 3851 3.075882 TGACTCCCAACCTCCAAATGATT 59.924 43.478 0.00 0.00 0.00 2.57
1821 3942 6.372103 GCATTGGGATGATTGAACAAAATCAA 59.628 34.615 3.92 0.00 46.66 2.57
1926 4065 6.945435 TGTTCACCTGGCTTTCTATTTGAATA 59.055 34.615 0.00 0.00 34.24 1.75
2092 4231 3.870633 ATGTAACGGACTGAACCTCTC 57.129 47.619 0.00 0.00 0.00 3.20
2098 4237 2.966516 ACGGACTGAACCTCTCTTTCTT 59.033 45.455 0.00 0.00 0.00 2.52
2263 4402 9.903682 TTACATTTATCGTTAGCTAGTACCATC 57.096 33.333 0.00 0.00 0.00 3.51
2641 4780 0.971386 CAAATTTGGCTGAGGTGGCT 59.029 50.000 10.49 0.00 0.00 4.75
2884 5026 7.782049 AGCTTGTATTCACACAATAGCTACTA 58.218 34.615 0.00 0.00 41.27 1.82
3053 5200 8.667987 TTATGTGTCTTTAATGTTTTGATCGC 57.332 30.769 0.00 0.00 0.00 4.58
3062 5209 7.539712 TTAATGTTTTGATCGCTAGAGAAGG 57.460 36.000 0.00 0.00 0.00 3.46
3185 5332 3.596214 TCCTCGGTTTGAAGACATAAGC 58.404 45.455 0.00 0.00 0.00 3.09
3225 5372 9.034544 GGACATAAATTTGTGGATTTGATAAGC 57.965 33.333 17.83 0.00 31.96 3.09
3756 5906 4.691860 AAAATTGTCTCCAGCTGATTCG 57.308 40.909 17.39 0.00 0.00 3.34
3760 5910 1.406898 TGTCTCCAGCTGATTCGCTAG 59.593 52.381 17.39 0.00 38.41 3.42
4123 6301 3.384168 AGAATGTGTATGCCCCTGTAGA 58.616 45.455 0.00 0.00 0.00 2.59
4309 6488 7.208080 ACTGACATTTGTCTTCTTTACGTACT 58.792 34.615 11.67 0.00 44.99 2.73
4423 6602 5.700373 TGTAATACGCATATGTGTGCATGAT 59.300 36.000 28.04 12.90 45.30 2.45
4628 6810 4.151689 CCGTTCATTTTCAGAAGCGAACTA 59.848 41.667 14.58 0.00 32.52 2.24
4634 6816 2.988010 TCAGAAGCGAACTATGGCAT 57.012 45.000 4.88 4.88 31.86 4.40
4907 7089 1.810151 GCTTATGTTGTCCTTGCGGAA 59.190 47.619 0.00 0.00 42.08 4.30
4964 7146 0.688087 ACCTCCTAGCACCTGTAGCC 60.688 60.000 0.00 0.00 0.00 3.93
5132 7318 2.294791 ACTCTCTTGGACTTCACGTCTG 59.705 50.000 0.00 0.00 42.44 3.51
5150 7336 4.494811 CGAAGCACTGATACGGCA 57.505 55.556 0.00 0.00 0.00 5.69
5379 7565 6.564709 TTTCAAGTCCTGAAACATCATCAG 57.435 37.500 0.00 0.00 46.80 2.90
5452 7638 4.931661 AGGACGTTTTAGAGACTTGACA 57.068 40.909 0.00 0.00 0.00 3.58
5453 7639 4.618965 AGGACGTTTTAGAGACTTGACAC 58.381 43.478 0.00 0.00 0.00 3.67
5454 7640 3.424529 GGACGTTTTAGAGACTTGACACG 59.575 47.826 0.00 0.00 0.00 4.49
5455 7641 4.037858 ACGTTTTAGAGACTTGACACGT 57.962 40.909 0.00 0.00 34.92 4.49
5456 7642 4.040376 ACGTTTTAGAGACTTGACACGTC 58.960 43.478 3.95 3.95 34.71 4.34
5457 7643 3.424529 CGTTTTAGAGACTTGACACGTCC 59.575 47.826 8.37 1.32 31.83 4.79
5458 7644 4.618965 GTTTTAGAGACTTGACACGTCCT 58.381 43.478 8.37 8.01 31.83 3.85
5459 7645 5.561532 CGTTTTAGAGACTTGACACGTCCTA 60.562 44.000 8.37 7.17 31.83 2.94
5460 7646 6.388278 GTTTTAGAGACTTGACACGTCCTAT 58.612 40.000 8.37 0.00 31.83 2.57
5461 7647 7.533426 GTTTTAGAGACTTGACACGTCCTATA 58.467 38.462 8.37 3.56 31.83 1.31
5462 7648 7.876936 TTTAGAGACTTGACACGTCCTATAT 57.123 36.000 8.37 0.00 31.83 0.86
5463 7649 7.876936 TTAGAGACTTGACACGTCCTATATT 57.123 36.000 8.37 0.00 31.83 1.28
5464 7650 8.969260 TTAGAGACTTGACACGTCCTATATTA 57.031 34.615 8.37 0.00 31.83 0.98
5541 7727 3.513225 GGATTGCCGACACCATGG 58.487 61.111 11.19 11.19 0.00 3.66
5559 7745 2.752358 CCAGCCTCTTCACCTGCA 59.248 61.111 0.00 0.00 0.00 4.41
5574 7760 1.876156 CCTGCACCTTCAACTTCAGTC 59.124 52.381 0.00 0.00 0.00 3.51
5575 7761 2.564771 CTGCACCTTCAACTTCAGTCA 58.435 47.619 0.00 0.00 0.00 3.41
5627 7813 1.980784 CTAGCTGCCATGCCACTCCT 61.981 60.000 0.00 0.00 0.00 3.69
5765 7951 1.174783 TACCTCTCTCTTGTGACGGC 58.825 55.000 0.00 0.00 0.00 5.68
5842 8028 4.207281 CGAGGCGATTCCAGGCGA 62.207 66.667 0.00 0.00 39.33 5.54
5898 8084 0.878523 CCTTGTGCGGTCGAACAGAA 60.879 55.000 0.00 0.00 34.74 3.02
6145 8333 1.227380 GGCCGTATCAGTGCCTCAG 60.227 63.158 0.00 0.00 42.01 3.35
6167 8355 3.861569 GCTTCACGCTGTAATATGACC 57.138 47.619 0.00 0.00 35.14 4.02
6285 8474 4.385358 TTTATGTCAGCGTATCTGCTCA 57.615 40.909 0.00 0.00 45.23 4.26
6903 9101 2.481104 CGTTTGCTGGTCAAATGGTTGT 60.481 45.455 2.57 0.00 45.43 3.32
6934 9132 1.952102 CTGTCAATGGCATGCCCCAC 61.952 60.000 33.44 22.57 37.79 4.61
7113 9314 2.565834 GCATGTATACTACCACCCGGAT 59.434 50.000 0.73 0.00 35.59 4.18
7114 9315 3.616560 GCATGTATACTACCACCCGGATG 60.617 52.174 0.73 0.00 35.59 3.51
7184 9388 2.290916 CGCGTGGATGATGAGTAGTAGT 59.709 50.000 0.00 0.00 0.00 2.73
7231 9435 7.358066 TCGGATTACAACAGACGTAGATTATC 58.642 38.462 0.00 0.00 0.00 1.75
7283 9487 6.712095 GCATTCATCATAGGTCTTGTATCCAA 59.288 38.462 0.00 0.00 0.00 3.53
7287 9491 7.861629 TCATCATAGGTCTTGTATCCAAGTTT 58.138 34.615 0.00 0.00 46.70 2.66
7288 9492 8.988060 TCATCATAGGTCTTGTATCCAAGTTTA 58.012 33.333 0.00 0.00 46.70 2.01
7289 9493 9.046296 CATCATAGGTCTTGTATCCAAGTTTAC 57.954 37.037 0.00 0.00 46.70 2.01
7290 9494 8.141298 TCATAGGTCTTGTATCCAAGTTTACA 57.859 34.615 0.00 0.00 46.70 2.41
7291 9495 8.768397 TCATAGGTCTTGTATCCAAGTTTACAT 58.232 33.333 0.00 0.00 46.70 2.29
7293 9497 6.180472 AGGTCTTGTATCCAAGTTTACATGG 58.820 40.000 0.00 0.00 46.70 3.66
7294 9498 6.012858 AGGTCTTGTATCCAAGTTTACATGGA 60.013 38.462 9.06 9.06 46.23 3.41
7295 9499 6.657541 GGTCTTGTATCCAAGTTTACATGGAA 59.342 38.462 10.51 0.00 45.45 3.53
7296 9500 7.339466 GGTCTTGTATCCAAGTTTACATGGAAT 59.661 37.037 10.51 3.54 45.45 3.01
7336 9543 0.253610 TGTTCCTCGTGGTGGTTGTT 59.746 50.000 2.99 0.00 34.23 2.83
7337 9544 0.661020 GTTCCTCGTGGTGGTTGTTG 59.339 55.000 2.99 0.00 34.23 3.33
7338 9545 0.253610 TTCCTCGTGGTGGTTGTTGT 59.746 50.000 2.99 0.00 34.23 3.32
7395 9603 7.110155 TGGTGGTAAGATGTTTTTCTCCTATC 58.890 38.462 0.00 0.00 0.00 2.08
7458 9671 4.397420 TGGTGTTGAAGTAGCATGATTGT 58.603 39.130 0.00 0.00 0.00 2.71
7486 9699 8.650143 TTCCTATTAAAGAATGCTTCCTTTGT 57.350 30.769 0.00 0.00 34.74 2.83
7501 9714 3.077359 CCTTTGTCCTGTGAATCCTGAC 58.923 50.000 0.00 0.00 0.00 3.51
7617 10024 5.163953 CCTTGTGCGTACTGTCAGAATTTAG 60.164 44.000 6.91 0.00 0.00 1.85
7775 10820 3.181434 TGAGAACATTTTGGTACTGCCCT 60.181 43.478 0.00 0.00 36.04 5.19
7777 10822 1.256812 ACATTTTGGTACTGCCCTGC 58.743 50.000 0.00 0.00 36.04 4.85
7778 10823 1.203050 ACATTTTGGTACTGCCCTGCT 60.203 47.619 0.00 0.00 36.04 4.24
7779 10824 1.474077 CATTTTGGTACTGCCCTGCTC 59.526 52.381 0.00 0.00 36.04 4.26
7780 10825 0.605319 TTTTGGTACTGCCCTGCTCG 60.605 55.000 0.00 0.00 36.04 5.03
7781 10826 1.476845 TTTGGTACTGCCCTGCTCGA 61.477 55.000 0.00 0.00 36.04 4.04
7783 10828 1.448013 GGTACTGCCCTGCTCGAAC 60.448 63.158 0.00 0.00 0.00 3.95
7784 10829 1.592223 GTACTGCCCTGCTCGAACT 59.408 57.895 0.00 0.00 0.00 3.01
7786 10831 0.246635 TACTGCCCTGCTCGAACTTC 59.753 55.000 0.00 0.00 0.00 3.01
7787 10832 1.294780 CTGCCCTGCTCGAACTTCT 59.705 57.895 0.00 0.00 0.00 2.85
7788 10833 1.004560 TGCCCTGCTCGAACTTCTG 60.005 57.895 0.00 0.00 0.00 3.02
7789 10834 1.293498 GCCCTGCTCGAACTTCTGA 59.707 57.895 0.00 0.00 0.00 3.27
7790 10835 0.107945 GCCCTGCTCGAACTTCTGAT 60.108 55.000 0.00 0.00 0.00 2.90
7791 10836 1.677217 GCCCTGCTCGAACTTCTGATT 60.677 52.381 0.00 0.00 0.00 2.57
7792 10837 2.275318 CCCTGCTCGAACTTCTGATTC 58.725 52.381 0.00 0.00 0.00 2.52
7793 10838 2.093764 CCCTGCTCGAACTTCTGATTCT 60.094 50.000 0.00 0.00 0.00 2.40
7794 10839 3.186119 CCTGCTCGAACTTCTGATTCTC 58.814 50.000 0.00 0.00 0.00 2.87
7795 10840 3.367806 CCTGCTCGAACTTCTGATTCTCA 60.368 47.826 0.00 0.00 0.00 3.27
7796 10841 4.431809 CTGCTCGAACTTCTGATTCTCAT 58.568 43.478 0.00 0.00 0.00 2.90
7797 10842 4.825422 TGCTCGAACTTCTGATTCTCATT 58.175 39.130 0.00 0.00 0.00 2.57
7798 10843 4.628766 TGCTCGAACTTCTGATTCTCATTG 59.371 41.667 0.00 0.00 0.00 2.82
7799 10844 4.867047 GCTCGAACTTCTGATTCTCATTGA 59.133 41.667 0.00 0.00 0.00 2.57
7800 10845 5.349817 GCTCGAACTTCTGATTCTCATTGAA 59.650 40.000 0.00 0.00 39.24 2.69
7801 10846 6.455380 GCTCGAACTTCTGATTCTCATTGAAG 60.455 42.308 0.00 0.00 38.18 3.02
7802 10847 6.691508 TCGAACTTCTGATTCTCATTGAAGA 58.308 36.000 11.08 0.00 38.18 2.87
7803 10848 7.154656 TCGAACTTCTGATTCTCATTGAAGAA 58.845 34.615 11.08 0.00 39.49 2.52
7804 10849 7.657354 TCGAACTTCTGATTCTCATTGAAGAAA 59.343 33.333 11.08 0.00 38.69 2.52
7805 10850 7.743838 CGAACTTCTGATTCTCATTGAAGAAAC 59.256 37.037 11.08 1.32 38.69 2.78
7806 10851 8.688747 AACTTCTGATTCTCATTGAAGAAACT 57.311 30.769 11.08 0.00 38.69 2.66
7807 10852 8.321650 ACTTCTGATTCTCATTGAAGAAACTC 57.678 34.615 11.08 0.00 38.69 3.01
7808 10853 8.156165 ACTTCTGATTCTCATTGAAGAAACTCT 58.844 33.333 11.08 0.00 38.69 3.24
7809 10854 7.902387 TCTGATTCTCATTGAAGAAACTCTG 57.098 36.000 3.69 3.34 38.69 3.35
7810 10855 6.877855 TCTGATTCTCATTGAAGAAACTCTGG 59.122 38.462 3.69 0.00 38.69 3.86
7811 10856 6.772605 TGATTCTCATTGAAGAAACTCTGGA 58.227 36.000 3.69 0.00 38.69 3.86
7812 10857 7.226441 TGATTCTCATTGAAGAAACTCTGGAA 58.774 34.615 3.69 0.00 38.69 3.53
7813 10858 7.720957 TGATTCTCATTGAAGAAACTCTGGAAA 59.279 33.333 3.69 0.00 38.69 3.13
7814 10859 7.880160 TTCTCATTGAAGAAACTCTGGAAAA 57.120 32.000 0.00 0.00 32.42 2.29
7815 10860 7.502120 TCTCATTGAAGAAACTCTGGAAAAG 57.498 36.000 0.00 0.00 0.00 2.27
7816 10861 6.488006 TCTCATTGAAGAAACTCTGGAAAAGG 59.512 38.462 0.00 0.00 0.00 3.11
7817 10862 6.364701 TCATTGAAGAAACTCTGGAAAAGGA 58.635 36.000 0.00 0.00 0.00 3.36
7818 10863 6.488006 TCATTGAAGAAACTCTGGAAAAGGAG 59.512 38.462 0.00 0.00 35.86 3.69
7819 10864 4.718961 TGAAGAAACTCTGGAAAAGGAGG 58.281 43.478 0.00 0.00 34.22 4.30
7820 10865 4.412199 TGAAGAAACTCTGGAAAAGGAGGA 59.588 41.667 0.00 0.00 34.22 3.71
7821 10866 5.104109 TGAAGAAACTCTGGAAAAGGAGGAA 60.104 40.000 0.00 0.00 34.22 3.36
7822 10867 4.979335 AGAAACTCTGGAAAAGGAGGAAG 58.021 43.478 0.00 0.00 34.22 3.46
7823 10868 4.413851 AGAAACTCTGGAAAAGGAGGAAGT 59.586 41.667 0.00 0.00 34.22 3.01
7824 10869 4.359434 AACTCTGGAAAAGGAGGAAGTC 57.641 45.455 0.00 0.00 34.22 3.01
7825 10870 3.592865 ACTCTGGAAAAGGAGGAAGTCT 58.407 45.455 0.00 0.00 34.22 3.24
7826 10871 4.753186 ACTCTGGAAAAGGAGGAAGTCTA 58.247 43.478 0.00 0.00 34.22 2.59
7827 10872 5.346270 ACTCTGGAAAAGGAGGAAGTCTAT 58.654 41.667 0.00 0.00 34.22 1.98
7828 10873 5.788014 ACTCTGGAAAAGGAGGAAGTCTATT 59.212 40.000 0.00 0.00 34.22 1.73
7829 10874 6.054860 TCTGGAAAAGGAGGAAGTCTATTG 57.945 41.667 0.00 0.00 0.00 1.90
7830 10875 5.045578 TCTGGAAAAGGAGGAAGTCTATTGG 60.046 44.000 0.00 0.00 0.00 3.16
7831 10876 4.018415 TGGAAAAGGAGGAAGTCTATTGGG 60.018 45.833 0.00 0.00 0.00 4.12
7832 10877 4.018324 GGAAAAGGAGGAAGTCTATTGGGT 60.018 45.833 0.00 0.00 0.00 4.51
7833 10878 4.576330 AAAGGAGGAAGTCTATTGGGTG 57.424 45.455 0.00 0.00 0.00 4.61
7834 10879 1.840635 AGGAGGAAGTCTATTGGGTGC 59.159 52.381 0.00 0.00 0.00 5.01
7835 10880 1.559682 GGAGGAAGTCTATTGGGTGCA 59.440 52.381 0.00 0.00 0.00 4.57
7836 10881 2.420687 GGAGGAAGTCTATTGGGTGCAG 60.421 54.545 0.00 0.00 0.00 4.41
7837 10882 1.065126 AGGAAGTCTATTGGGTGCAGC 60.065 52.381 7.55 7.55 0.00 5.25
7838 10883 1.009829 GAAGTCTATTGGGTGCAGCG 58.990 55.000 10.24 0.00 0.00 5.18
7839 10884 0.392998 AAGTCTATTGGGTGCAGCGG 60.393 55.000 10.24 0.00 0.00 5.52
7840 10885 1.220749 GTCTATTGGGTGCAGCGGA 59.779 57.895 10.24 0.63 0.00 5.54
7841 10886 0.811616 GTCTATTGGGTGCAGCGGAG 60.812 60.000 10.24 4.37 0.00 4.63
7854 10899 3.814268 CGGAGCCGTGCCAATTGG 61.814 66.667 20.81 20.81 34.74 3.16
7868 10913 3.909732 CCAATTGGCTTAAGTATGGGGA 58.090 45.455 12.53 0.00 0.00 4.81
7869 10914 4.482990 CCAATTGGCTTAAGTATGGGGAT 58.517 43.478 12.53 0.00 0.00 3.85
7870 10915 4.524328 CCAATTGGCTTAAGTATGGGGATC 59.476 45.833 12.53 0.00 0.00 3.36
7871 10916 3.485463 TTGGCTTAAGTATGGGGATCG 57.515 47.619 4.02 0.00 0.00 3.69
7872 10917 1.697432 TGGCTTAAGTATGGGGATCGG 59.303 52.381 4.02 0.00 0.00 4.18
7873 10918 1.975680 GGCTTAAGTATGGGGATCGGA 59.024 52.381 4.02 0.00 0.00 4.55
7874 10919 2.370849 GGCTTAAGTATGGGGATCGGAA 59.629 50.000 4.02 0.00 0.00 4.30
7875 10920 3.400255 GCTTAAGTATGGGGATCGGAAC 58.600 50.000 4.02 0.00 0.00 3.62
7876 10921 3.181458 GCTTAAGTATGGGGATCGGAACA 60.181 47.826 4.02 0.00 0.00 3.18
7877 10922 4.377897 CTTAAGTATGGGGATCGGAACAC 58.622 47.826 0.00 0.00 0.00 3.32
7878 10923 1.874129 AGTATGGGGATCGGAACACA 58.126 50.000 0.00 0.00 0.00 3.72
7879 10924 2.193127 AGTATGGGGATCGGAACACAA 58.807 47.619 0.00 0.00 0.00 3.33
7880 10925 2.574369 AGTATGGGGATCGGAACACAAA 59.426 45.455 0.00 0.00 0.00 2.83
7881 10926 1.834188 ATGGGGATCGGAACACAAAC 58.166 50.000 0.00 0.00 0.00 2.93
7882 10927 0.768622 TGGGGATCGGAACACAAACT 59.231 50.000 0.00 0.00 0.00 2.66
7883 10928 1.144093 TGGGGATCGGAACACAAACTT 59.856 47.619 0.00 0.00 0.00 2.66
7884 10929 1.810755 GGGGATCGGAACACAAACTTC 59.189 52.381 0.00 0.00 0.00 3.01
7885 10930 2.552373 GGGGATCGGAACACAAACTTCT 60.552 50.000 0.00 0.00 0.00 2.85
7886 10931 3.146847 GGGATCGGAACACAAACTTCTT 58.853 45.455 0.00 0.00 0.00 2.52
7887 10932 3.188667 GGGATCGGAACACAAACTTCTTC 59.811 47.826 0.00 0.00 0.00 2.87
7888 10933 3.813166 GGATCGGAACACAAACTTCTTCA 59.187 43.478 0.00 0.00 0.00 3.02
7889 10934 4.274950 GGATCGGAACACAAACTTCTTCAA 59.725 41.667 0.00 0.00 0.00 2.69
7890 10935 4.609691 TCGGAACACAAACTTCTTCAAC 57.390 40.909 0.00 0.00 0.00 3.18
7891 10936 4.004314 TCGGAACACAAACTTCTTCAACA 58.996 39.130 0.00 0.00 0.00 3.33
7892 10937 4.456222 TCGGAACACAAACTTCTTCAACAA 59.544 37.500 0.00 0.00 0.00 2.83
7893 10938 5.124776 TCGGAACACAAACTTCTTCAACAAT 59.875 36.000 0.00 0.00 0.00 2.71
7894 10939 5.804979 CGGAACACAAACTTCTTCAACAATT 59.195 36.000 0.00 0.00 0.00 2.32
7895 10940 6.310224 CGGAACACAAACTTCTTCAACAATTT 59.690 34.615 0.00 0.00 0.00 1.82
7896 10941 7.148656 CGGAACACAAACTTCTTCAACAATTTT 60.149 33.333 0.00 0.00 0.00 1.82
7897 10942 7.956943 GGAACACAAACTTCTTCAACAATTTTG 59.043 33.333 0.00 0.00 32.46 2.44
7898 10943 6.830736 ACACAAACTTCTTCAACAATTTTGC 58.169 32.000 0.00 0.00 30.41 3.68
7899 10944 5.953205 CACAAACTTCTTCAACAATTTTGCG 59.047 36.000 0.00 0.00 30.41 4.85
7900 10945 5.866633 ACAAACTTCTTCAACAATTTTGCGA 59.133 32.000 0.00 0.00 30.41 5.10
7901 10946 5.949233 AACTTCTTCAACAATTTTGCGAC 57.051 34.783 0.00 0.00 0.00 5.19
7902 10947 4.035017 ACTTCTTCAACAATTTTGCGACG 58.965 39.130 0.00 0.00 0.00 5.12
7903 10948 2.993545 TCTTCAACAATTTTGCGACGG 58.006 42.857 0.00 0.00 0.00 4.79
7904 10949 1.451651 CTTCAACAATTTTGCGACGGC 59.548 47.619 0.00 0.00 40.52 5.68
7905 10950 0.318275 TCAACAATTTTGCGACGGCC 60.318 50.000 0.00 0.00 38.85 6.13
7906 10951 0.596083 CAACAATTTTGCGACGGCCA 60.596 50.000 2.24 0.00 38.85 5.36
7907 10952 0.318614 AACAATTTTGCGACGGCCAG 60.319 50.000 2.24 0.00 38.85 4.85
7908 10953 1.169661 ACAATTTTGCGACGGCCAGA 61.170 50.000 2.24 0.00 38.85 3.86
7909 10954 0.039617 CAATTTTGCGACGGCCAGAA 60.040 50.000 2.24 0.00 38.85 3.02
7910 10955 0.240945 AATTTTGCGACGGCCAGAAG 59.759 50.000 2.24 0.00 38.85 2.85
7911 10956 0.605319 ATTTTGCGACGGCCAGAAGA 60.605 50.000 2.24 0.00 38.85 2.87
7912 10957 0.816018 TTTTGCGACGGCCAGAAGAA 60.816 50.000 2.24 0.00 38.85 2.52
7913 10958 1.227999 TTTGCGACGGCCAGAAGAAG 61.228 55.000 2.24 0.00 38.85 2.85
7914 10959 2.815647 GCGACGGCCAGAAGAAGG 60.816 66.667 2.24 0.00 0.00 3.46
7915 10960 2.970639 CGACGGCCAGAAGAAGGA 59.029 61.111 2.24 0.00 0.00 3.36
7916 10961 1.153745 CGACGGCCAGAAGAAGGAG 60.154 63.158 2.24 0.00 0.00 3.69
7917 10962 1.595993 CGACGGCCAGAAGAAGGAGA 61.596 60.000 2.24 0.00 0.00 3.71
7918 10963 0.608640 GACGGCCAGAAGAAGGAGAA 59.391 55.000 2.24 0.00 0.00 2.87
7919 10964 1.002087 GACGGCCAGAAGAAGGAGAAA 59.998 52.381 2.24 0.00 0.00 2.52
7920 10965 1.270893 ACGGCCAGAAGAAGGAGAAAC 60.271 52.381 2.24 0.00 0.00 2.78
7921 10966 1.827681 GGCCAGAAGAAGGAGAAACC 58.172 55.000 0.00 0.00 39.35 3.27
7922 10967 1.073923 GGCCAGAAGAAGGAGAAACCA 59.926 52.381 0.00 0.00 42.04 3.67
7923 10968 2.431454 GCCAGAAGAAGGAGAAACCAG 58.569 52.381 0.00 0.00 42.04 4.00
7924 10969 2.039084 GCCAGAAGAAGGAGAAACCAGA 59.961 50.000 0.00 0.00 42.04 3.86
7925 10970 3.308046 GCCAGAAGAAGGAGAAACCAGAT 60.308 47.826 0.00 0.00 42.04 2.90
7926 10971 4.512484 CCAGAAGAAGGAGAAACCAGATC 58.488 47.826 0.00 0.00 42.04 2.75
7927 10972 4.512484 CAGAAGAAGGAGAAACCAGATCC 58.488 47.826 0.00 0.00 42.04 3.36
7928 10973 3.196685 AGAAGAAGGAGAAACCAGATCCG 59.803 47.826 0.00 0.00 42.04 4.18
7929 10974 1.834263 AGAAGGAGAAACCAGATCCGG 59.166 52.381 0.00 0.00 42.04 5.14
7930 10975 1.831736 GAAGGAGAAACCAGATCCGGA 59.168 52.381 6.61 6.61 42.04 5.14
7931 10976 1.952621 AGGAGAAACCAGATCCGGAA 58.047 50.000 9.01 0.00 42.04 4.30
7932 10977 2.266279 AGGAGAAACCAGATCCGGAAA 58.734 47.619 9.01 0.00 42.04 3.13
7933 10978 2.027100 AGGAGAAACCAGATCCGGAAAC 60.027 50.000 9.01 6.01 42.04 2.78
7934 10979 2.027100 GGAGAAACCAGATCCGGAAACT 60.027 50.000 9.01 8.65 38.79 2.66
7935 10980 3.559384 GGAGAAACCAGATCCGGAAACTT 60.559 47.826 9.01 0.00 38.79 2.66
7936 10981 3.676093 AGAAACCAGATCCGGAAACTTC 58.324 45.455 9.01 0.16 0.00 3.01
7937 10982 3.328050 AGAAACCAGATCCGGAAACTTCT 59.672 43.478 9.01 3.25 0.00 2.85
7938 10983 3.790089 AACCAGATCCGGAAACTTCTT 57.210 42.857 9.01 2.00 0.00 2.52
7939 10984 3.059352 ACCAGATCCGGAAACTTCTTG 57.941 47.619 9.01 5.20 0.00 3.02
7940 10985 2.290323 ACCAGATCCGGAAACTTCTTGG 60.290 50.000 9.01 12.96 0.00 3.61
7941 10986 2.027192 CCAGATCCGGAAACTTCTTGGA 60.027 50.000 9.01 6.48 36.59 3.53
7942 10987 3.265791 CAGATCCGGAAACTTCTTGGAG 58.734 50.000 9.01 0.00 35.98 3.86
7943 10988 3.055819 CAGATCCGGAAACTTCTTGGAGA 60.056 47.826 9.01 0.00 35.98 3.71
7944 10989 3.777522 AGATCCGGAAACTTCTTGGAGAT 59.222 43.478 9.01 0.00 35.98 2.75
7945 10990 3.334583 TCCGGAAACTTCTTGGAGATG 57.665 47.619 0.00 0.00 31.41 2.90
7946 10991 2.903784 TCCGGAAACTTCTTGGAGATGA 59.096 45.455 0.00 0.00 31.41 2.92
7947 10992 3.519510 TCCGGAAACTTCTTGGAGATGAT 59.480 43.478 0.00 0.00 31.41 2.45
7948 10993 3.624861 CCGGAAACTTCTTGGAGATGATG 59.375 47.826 0.00 0.00 0.00 3.07
7949 10994 3.624861 CGGAAACTTCTTGGAGATGATGG 59.375 47.826 0.00 0.00 0.00 3.51
7950 10995 3.379688 GGAAACTTCTTGGAGATGATGGC 59.620 47.826 0.00 0.00 0.00 4.40
7951 10996 3.726557 AACTTCTTGGAGATGATGGCA 57.273 42.857 0.00 0.00 0.00 4.92
7952 10997 3.947612 ACTTCTTGGAGATGATGGCAT 57.052 42.857 0.00 0.00 37.47 4.40
7953 10998 5.378230 AACTTCTTGGAGATGATGGCATA 57.622 39.130 0.00 0.00 34.11 3.14
7954 10999 5.579753 ACTTCTTGGAGATGATGGCATAT 57.420 39.130 0.00 0.00 34.11 1.78
7955 11000 5.314529 ACTTCTTGGAGATGATGGCATATG 58.685 41.667 0.00 0.00 34.11 1.78
7956 11001 4.296621 TCTTGGAGATGATGGCATATGG 57.703 45.455 0.00 0.00 34.11 2.74
7957 11002 3.911894 TCTTGGAGATGATGGCATATGGA 59.088 43.478 0.00 0.00 34.11 3.41
7958 11003 4.351704 TCTTGGAGATGATGGCATATGGAA 59.648 41.667 0.00 0.00 34.11 3.53
7959 11004 4.296621 TGGAGATGATGGCATATGGAAG 57.703 45.455 0.00 0.00 34.11 3.46
7960 11005 3.009805 TGGAGATGATGGCATATGGAAGG 59.990 47.826 0.00 0.00 34.11 3.46
7961 11006 3.265221 GGAGATGATGGCATATGGAAGGA 59.735 47.826 0.00 0.00 34.11 3.36
7962 11007 4.263639 GGAGATGATGGCATATGGAAGGAA 60.264 45.833 0.00 0.00 34.11 3.36
7963 11008 4.919793 AGATGATGGCATATGGAAGGAAG 58.080 43.478 0.00 0.00 34.11 3.46
7964 11009 4.600547 AGATGATGGCATATGGAAGGAAGA 59.399 41.667 0.00 0.00 34.11 2.87
7965 11010 5.253330 AGATGATGGCATATGGAAGGAAGAT 59.747 40.000 0.00 0.00 34.11 2.40
7966 11011 4.659115 TGATGGCATATGGAAGGAAGATG 58.341 43.478 0.00 0.00 0.00 2.90
7967 11012 4.105217 TGATGGCATATGGAAGGAAGATGT 59.895 41.667 0.00 0.00 0.00 3.06
7968 11013 5.310331 TGATGGCATATGGAAGGAAGATGTA 59.690 40.000 0.00 0.00 0.00 2.29
7969 11014 5.233083 TGGCATATGGAAGGAAGATGTAG 57.767 43.478 4.56 0.00 0.00 2.74
7970 11015 4.907269 TGGCATATGGAAGGAAGATGTAGA 59.093 41.667 4.56 0.00 0.00 2.59
7971 11016 5.221722 TGGCATATGGAAGGAAGATGTAGAC 60.222 44.000 4.56 0.00 0.00 2.59
7972 11017 5.012561 GGCATATGGAAGGAAGATGTAGACT 59.987 44.000 4.56 0.00 0.00 3.24
7973 11018 6.465035 GGCATATGGAAGGAAGATGTAGACTT 60.465 42.308 4.56 0.00 0.00 3.01
7974 11019 6.648725 GCATATGGAAGGAAGATGTAGACTTC 59.351 42.308 4.56 0.00 41.79 3.01
7975 11020 7.687837 GCATATGGAAGGAAGATGTAGACTTCA 60.688 40.741 4.56 0.00 43.56 3.02
7976 11021 6.821616 ATGGAAGGAAGATGTAGACTTCAT 57.178 37.500 0.00 0.00 43.56 2.57
7977 11022 5.982356 TGGAAGGAAGATGTAGACTTCATG 58.018 41.667 0.00 0.00 43.56 3.07
7978 11023 5.104776 TGGAAGGAAGATGTAGACTTCATGG 60.105 44.000 0.00 0.00 43.56 3.66
7979 11024 5.363939 GAAGGAAGATGTAGACTTCATGGG 58.636 45.833 0.00 0.00 43.56 4.00
7980 11025 4.624913 AGGAAGATGTAGACTTCATGGGA 58.375 43.478 0.00 0.00 43.56 4.37
7981 11026 5.032846 AGGAAGATGTAGACTTCATGGGAA 58.967 41.667 0.00 0.00 43.56 3.97
7982 11027 5.488919 AGGAAGATGTAGACTTCATGGGAAA 59.511 40.000 0.00 0.00 43.56 3.13
7983 11028 6.159398 AGGAAGATGTAGACTTCATGGGAAAT 59.841 38.462 0.00 0.00 43.56 2.17
7984 11029 6.830838 GGAAGATGTAGACTTCATGGGAAATT 59.169 38.462 0.00 0.00 43.56 1.82
7985 11030 7.340487 GGAAGATGTAGACTTCATGGGAAATTT 59.660 37.037 0.00 0.00 43.56 1.82
7986 11031 9.396022 GAAGATGTAGACTTCATGGGAAATTTA 57.604 33.333 0.00 0.00 42.02 1.40
7987 11032 9.753674 AAGATGTAGACTTCATGGGAAATTTAA 57.246 29.630 0.00 0.00 31.35 1.52
7988 11033 9.927081 AGATGTAGACTTCATGGGAAATTTAAT 57.073 29.630 0.00 0.00 31.35 1.40
7990 11035 9.927081 ATGTAGACTTCATGGGAAATTTAATCT 57.073 29.630 0.00 0.00 31.35 2.40
7991 11036 9.396022 TGTAGACTTCATGGGAAATTTAATCTC 57.604 33.333 0.00 0.00 31.35 2.75
7992 11037 9.620259 GTAGACTTCATGGGAAATTTAATCTCT 57.380 33.333 0.00 0.00 31.35 3.10
7993 11038 8.517062 AGACTTCATGGGAAATTTAATCTCTG 57.483 34.615 0.00 0.00 31.35 3.35
7994 11039 8.331740 AGACTTCATGGGAAATTTAATCTCTGA 58.668 33.333 0.00 0.00 31.35 3.27
7995 11040 9.129532 GACTTCATGGGAAATTTAATCTCTGAT 57.870 33.333 0.00 0.00 31.35 2.90
7996 11041 9.484806 ACTTCATGGGAAATTTAATCTCTGATT 57.515 29.630 0.00 0.00 31.35 2.57
8011 11056 8.723942 AATCTCTGATTACTTTAAATCGCTGT 57.276 30.769 0.00 0.00 38.47 4.40
8012 11057 8.723942 ATCTCTGATTACTTTAAATCGCTGTT 57.276 30.769 0.00 0.00 38.47 3.16
8013 11058 8.547967 TCTCTGATTACTTTAAATCGCTGTTT 57.452 30.769 0.00 0.00 38.47 2.83
8014 11059 9.647797 TCTCTGATTACTTTAAATCGCTGTTTA 57.352 29.630 0.00 0.00 38.47 2.01
8015 11060 9.690434 CTCTGATTACTTTAAATCGCTGTTTAC 57.310 33.333 0.00 0.00 38.47 2.01
8016 11061 9.431887 TCTGATTACTTTAAATCGCTGTTTACT 57.568 29.630 0.00 0.00 38.47 2.24
8021 11066 7.724305 ACTTTAAATCGCTGTTTACTTCTGA 57.276 32.000 0.00 0.00 0.00 3.27
8022 11067 8.149973 ACTTTAAATCGCTGTTTACTTCTGAA 57.850 30.769 0.00 0.00 0.00 3.02
8023 11068 8.283291 ACTTTAAATCGCTGTTTACTTCTGAAG 58.717 33.333 15.59 15.59 0.00 3.02
8024 11069 7.724305 TTAAATCGCTGTTTACTTCTGAAGT 57.276 32.000 24.80 24.80 45.40 3.01
8025 11070 6.619801 AAATCGCTGTTTACTTCTGAAGTT 57.380 33.333 26.33 11.97 42.81 2.66
8026 11071 5.597813 ATCGCTGTTTACTTCTGAAGTTG 57.402 39.130 26.33 13.32 42.81 3.16
8027 11072 4.439057 TCGCTGTTTACTTCTGAAGTTGT 58.561 39.130 26.33 7.15 42.81 3.32
8028 11073 5.593968 TCGCTGTTTACTTCTGAAGTTGTA 58.406 37.500 26.33 7.83 42.81 2.41
8029 11074 5.461078 TCGCTGTTTACTTCTGAAGTTGTAC 59.539 40.000 26.33 20.17 42.81 2.90
8030 11075 5.233476 CGCTGTTTACTTCTGAAGTTGTACA 59.767 40.000 26.33 22.82 42.81 2.90
8031 11076 6.419771 GCTGTTTACTTCTGAAGTTGTACAC 58.580 40.000 26.33 13.21 42.81 2.90
8032 11077 6.511282 GCTGTTTACTTCTGAAGTTGTACACC 60.511 42.308 26.33 15.15 42.81 4.16
8033 11078 5.818857 TGTTTACTTCTGAAGTTGTACACCC 59.181 40.000 26.33 8.45 42.81 4.61
8034 11079 5.617528 TTACTTCTGAAGTTGTACACCCA 57.382 39.130 26.33 4.22 42.81 4.51
8035 11080 4.497291 ACTTCTGAAGTTGTACACCCAA 57.503 40.909 17.00 0.00 39.04 4.12
8036 11081 4.850680 ACTTCTGAAGTTGTACACCCAAA 58.149 39.130 17.00 0.00 39.04 3.28
8037 11082 4.638865 ACTTCTGAAGTTGTACACCCAAAC 59.361 41.667 17.00 0.00 39.04 2.93
8038 11083 4.223556 TCTGAAGTTGTACACCCAAACA 57.776 40.909 0.00 0.00 0.00 2.83
8039 11084 4.787551 TCTGAAGTTGTACACCCAAACAT 58.212 39.130 0.00 0.00 0.00 2.71
8040 11085 4.578516 TCTGAAGTTGTACACCCAAACATG 59.421 41.667 0.00 0.00 0.00 3.21
8041 11086 3.634448 TGAAGTTGTACACCCAAACATGG 59.366 43.478 0.00 0.00 0.00 3.66
8042 11087 3.586470 AGTTGTACACCCAAACATGGA 57.414 42.857 0.00 0.00 0.00 3.41
8043 11088 4.112634 AGTTGTACACCCAAACATGGAT 57.887 40.909 0.00 0.00 0.00 3.41
8044 11089 3.826157 AGTTGTACACCCAAACATGGATG 59.174 43.478 0.00 0.00 0.00 3.51
8045 11090 3.517296 TGTACACCCAAACATGGATGT 57.483 42.857 0.00 0.00 44.20 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
233 269 7.042051 TCGGCCTTCAAATAGATTTAAATCTCG 60.042 37.037 29.45 21.95 44.30 4.04
246 282 8.062065 ACATCTTTAAAATCGGCCTTCAAATA 57.938 30.769 0.00 0.00 0.00 1.40
327 366 2.147958 ACAAAACGACCGTGCATGTAT 58.852 42.857 4.96 0.00 0.00 2.29
450 525 6.420604 CCGTTTTTGTATCTTTTGCTCACATT 59.579 34.615 0.00 0.00 0.00 2.71
588 663 2.546795 CCGTTCTGCTCTGTGTTCTTCT 60.547 50.000 0.00 0.00 0.00 2.85
614 689 2.313172 CGAGCAGCAGCAACTCGTT 61.313 57.895 22.47 0.00 46.19 3.85
701 1733 1.200519 ATTACCAGCTACCAGGCGAA 58.799 50.000 0.00 0.00 37.29 4.70
864 1926 1.212616 CCATCTGCCGAGTCGAATTC 58.787 55.000 15.64 0.00 0.00 2.17
1119 2181 1.473257 GCACACCAGCCATATCGAGAA 60.473 52.381 0.00 0.00 0.00 2.87
1135 2197 2.351924 GAACCCACCAAGGAGGCACA 62.352 60.000 0.00 0.00 43.14 4.57
1154 2216 2.622962 GCCGGAAACCAACCCTTCG 61.623 63.158 5.05 0.00 0.00 3.79
1246 2309 7.806409 ATTCAAATCACATCAATATCGGTCA 57.194 32.000 0.00 0.00 0.00 4.02
1343 3463 3.869912 GCAGCTGGAATGGAAGTAAGACA 60.870 47.826 17.12 0.00 0.00 3.41
1345 3465 2.356125 GGCAGCTGGAATGGAAGTAAGA 60.356 50.000 17.12 0.00 0.00 2.10
1350 3470 1.407979 GATTGGCAGCTGGAATGGAAG 59.592 52.381 17.12 0.00 0.00 3.46
1415 3535 4.201950 GCAAGACAATAAAGGATGCGTCAT 60.202 41.667 8.47 0.00 0.00 3.06
1570 3690 7.394016 TGCTCTCAACATTTTTCTGGAGTATA 58.606 34.615 0.00 0.00 0.00 1.47
1571 3691 6.240894 TGCTCTCAACATTTTTCTGGAGTAT 58.759 36.000 0.00 0.00 0.00 2.12
1625 3745 2.369394 GAGCACCCTTGATAAGTTGGG 58.631 52.381 0.00 0.00 44.89 4.12
1630 3750 1.009829 GCACGAGCACCCTTGATAAG 58.990 55.000 0.00 0.00 41.58 1.73
1652 3772 0.179150 GTCCGTTTGTTGCACAGCAA 60.179 50.000 0.00 0.00 46.80 3.91
1765 3885 9.746457 ATTACAAAGCTAGAAAGAAGAAAGGAT 57.254 29.630 0.00 0.00 0.00 3.24
1794 3914 1.750206 TGTTCAATCATCCCAATGCCG 59.250 47.619 0.00 0.00 32.58 5.69
1820 3941 5.539193 ACGAGGATTAAAGATCGGGACTATT 59.461 40.000 10.18 0.00 39.42 1.73
1821 3942 5.047943 CACGAGGATTAAAGATCGGGACTAT 60.048 44.000 10.18 0.00 40.98 2.12
1822 3943 4.277672 CACGAGGATTAAAGATCGGGACTA 59.722 45.833 10.18 0.00 40.98 2.59
1926 4065 9.790344 ATAACAGGTCGTGTATAGAGTTAGTAT 57.210 33.333 0.00 0.00 39.03 2.12
2098 4237 9.812347 AAGGCCATATTGAATTGTATAATCTGA 57.188 29.630 5.01 0.00 0.00 3.27
2263 4402 1.459592 CGCTGGTCTGGTTTTAGAACG 59.540 52.381 0.00 0.00 37.20 3.95
2384 4523 5.051508 GCATATTATTTTGGCTGTCTTTGCG 60.052 40.000 0.00 0.00 0.00 4.85
2884 5026 6.533012 CGTCAATATTCAATCTCTGTGTGTCT 59.467 38.462 0.00 0.00 0.00 3.41
2926 5068 7.174253 GTGTCACCTACAGGAATATTTGTTCAA 59.826 37.037 1.29 0.00 39.29 2.69
3037 5184 7.606456 ACCTTCTCTAGCGATCAAAACATTAAA 59.394 33.333 0.00 0.00 0.00 1.52
3053 5200 5.600484 AGGTTGATGGTGATACCTTCTCTAG 59.400 44.000 13.07 0.00 41.52 2.43
3062 5209 3.758554 AGCACAAAGGTTGATGGTGATAC 59.241 43.478 0.00 0.00 0.00 2.24
3225 5372 6.864685 ACATGTTTTGATTGAATGCACTACAG 59.135 34.615 0.00 0.00 0.00 2.74
3347 5494 2.381752 AAGGCAGCTAAACCTTTGGT 57.618 45.000 8.65 0.00 43.91 3.67
3626 5776 0.102481 CGTGGGAAGATCCGTCGATT 59.898 55.000 0.00 0.00 37.43 3.34
3756 5906 4.857871 TTGATTTGTCGTGTATGCTAGC 57.142 40.909 8.10 8.10 0.00 3.42
3760 5910 6.489675 AGATTGATTGATTTGTCGTGTATGC 58.510 36.000 0.00 0.00 0.00 3.14
4123 6301 4.911390 ACTAGCTAATTGACTGTGCCTTT 58.089 39.130 0.00 0.00 0.00 3.11
4309 6488 6.147821 GCTACAGTTATTCACAAGAAGCTGAA 59.852 38.462 0.00 0.00 37.14 3.02
4339 6518 6.731164 TCCTTTACACGAATTTTGAACCTTC 58.269 36.000 0.00 0.00 0.00 3.46
4907 7089 1.837439 TCCTCAACATTATGACCGCCT 59.163 47.619 0.00 0.00 0.00 5.52
5132 7318 1.358725 TTGCCGTATCAGTGCTTCGC 61.359 55.000 0.00 0.00 0.00 4.70
5150 7336 0.734889 CGTGTCCCCGTACTCGTATT 59.265 55.000 0.00 0.00 33.08 1.89
5379 7565 2.401583 TGCATACACCATGAGGACAC 57.598 50.000 0.00 0.00 36.69 3.67
5450 7636 7.055378 AGAGACTTGACTAATATAGGACGTGT 58.945 38.462 0.00 0.00 0.00 4.49
5451 7637 7.499321 AGAGACTTGACTAATATAGGACGTG 57.501 40.000 0.00 0.00 0.00 4.49
5452 7638 9.624373 TTTAGAGACTTGACTAATATAGGACGT 57.376 33.333 0.00 0.00 0.00 4.34
5459 7645 8.968969 AGGACGTTTTAGAGACTTGACTAATAT 58.031 33.333 0.00 0.00 0.00 1.28
5460 7646 8.345724 AGGACGTTTTAGAGACTTGACTAATA 57.654 34.615 0.00 0.00 0.00 0.98
5461 7647 7.229581 AGGACGTTTTAGAGACTTGACTAAT 57.770 36.000 0.00 0.00 0.00 1.73
5462 7648 6.645790 AGGACGTTTTAGAGACTTGACTAA 57.354 37.500 0.00 0.00 0.00 2.24
5463 7649 7.934855 ATAGGACGTTTTAGAGACTTGACTA 57.065 36.000 0.00 0.00 0.00 2.59
5464 7650 6.837471 ATAGGACGTTTTAGAGACTTGACT 57.163 37.500 0.00 0.00 0.00 3.41
5541 7727 2.749441 GCAGGTGAAGAGGCTGGC 60.749 66.667 0.00 0.00 0.00 4.85
5559 7745 3.316308 GCAACATGACTGAAGTTGAAGGT 59.684 43.478 0.00 0.00 43.93 3.50
5574 7760 0.443869 GTGGTACTGCGAGCAACATG 59.556 55.000 0.00 0.00 0.00 3.21
5575 7761 0.673644 GGTGGTACTGCGAGCAACAT 60.674 55.000 0.00 0.00 34.59 2.71
5627 7813 5.005740 GGAAATATGACATGGCATCTGCTA 58.994 41.667 19.78 0.00 41.70 3.49
5765 7951 2.272918 GACTCGAGCCTTCTCCACCG 62.273 65.000 13.61 0.00 35.94 4.94
5853 8039 2.586792 GATTGAGGGCAGGAGCGT 59.413 61.111 0.00 0.00 43.41 5.07
5898 8084 2.354203 CCCTAACTTTGCTCTCTCGCTT 60.354 50.000 0.00 0.00 0.00 4.68
5974 8161 1.227234 CACTCGTGACACCACAGCA 60.227 57.895 0.00 0.00 43.34 4.41
6285 8474 5.012239 AGCAACATTGGATTAGTGACACAT 58.988 37.500 8.59 0.00 0.00 3.21
6505 8694 1.518102 CGCACATTCACACAAGCAAAC 59.482 47.619 0.00 0.00 0.00 2.93
6903 9101 0.842030 ATTGACAGCCCCAGGTCTCA 60.842 55.000 0.00 0.00 35.11 3.27
6934 9132 1.228124 TGGTTCAACTTGAGGGGCG 60.228 57.895 0.00 0.00 0.00 6.13
7074 9272 0.525761 GCATTCTGCGGCCTAAAACA 59.474 50.000 0.00 0.00 31.71 2.83
7113 9314 1.186200 CAGGGACGATCCTCTGTTCA 58.814 55.000 0.00 0.00 36.57 3.18
7114 9315 1.134965 CACAGGGACGATCCTCTGTTC 60.135 57.143 17.18 0.00 41.85 3.18
7184 9388 4.414337 AAAGCCAAGGCAAACATAACAA 57.586 36.364 14.40 0.00 44.88 2.83
7284 9488 9.802039 TGGGACCTATTATTATTCCATGTAAAC 57.198 33.333 0.00 0.00 0.00 2.01
7287 9491 8.751215 ACTGGGACCTATTATTATTCCATGTA 57.249 34.615 0.00 0.00 0.00 2.29
7288 9492 7.648177 ACTGGGACCTATTATTATTCCATGT 57.352 36.000 0.00 0.00 0.00 3.21
7289 9493 7.944554 ACAACTGGGACCTATTATTATTCCATG 59.055 37.037 0.00 0.00 0.00 3.66
7290 9494 8.057246 ACAACTGGGACCTATTATTATTCCAT 57.943 34.615 0.00 0.00 0.00 3.41
7291 9495 7.460214 ACAACTGGGACCTATTATTATTCCA 57.540 36.000 0.00 0.00 0.00 3.53
7293 9497 9.185680 ACAAACAACTGGGACCTATTATTATTC 57.814 33.333 0.00 0.00 0.00 1.75
7294 9498 9.541884 AACAAACAACTGGGACCTATTATTATT 57.458 29.630 0.00 0.00 0.00 1.40
7295 9499 9.185680 GAACAAACAACTGGGACCTATTATTAT 57.814 33.333 0.00 0.00 0.00 1.28
7296 9500 7.612633 GGAACAAACAACTGGGACCTATTATTA 59.387 37.037 0.00 0.00 0.00 0.98
7336 9543 3.497332 ACACTAGTCTAGTTGGCAGACA 58.503 45.455 9.95 0.00 44.03 3.41
7337 9544 5.640189 TTACACTAGTCTAGTTGGCAGAC 57.360 43.478 9.95 0.00 42.30 3.51
7338 9545 6.659745 TTTTACACTAGTCTAGTTGGCAGA 57.340 37.500 9.95 0.00 36.76 4.26
7510 9723 9.429109 TCACCTACATACTTGTATAAGATTCCA 57.571 33.333 6.19 0.00 37.68 3.53
7617 10024 4.970003 CGAAATGTGGAGTTTTTGTGTCTC 59.030 41.667 0.00 0.00 0.00 3.36
7724 10768 1.040646 TGTCACCTTCAGCGACTTCT 58.959 50.000 0.00 0.00 0.00 2.85
7775 10820 3.942130 TGAGAATCAGAAGTTCGAGCA 57.058 42.857 1.01 0.00 42.56 4.26
7788 10833 7.678947 TTCCAGAGTTTCTTCAATGAGAATC 57.321 36.000 0.00 0.00 35.70 2.52
7789 10834 8.469309 TTTTCCAGAGTTTCTTCAATGAGAAT 57.531 30.769 0.00 0.00 35.70 2.40
7790 10835 7.013655 CCTTTTCCAGAGTTTCTTCAATGAGAA 59.986 37.037 0.00 0.00 34.00 2.87
7791 10836 6.488006 CCTTTTCCAGAGTTTCTTCAATGAGA 59.512 38.462 0.00 0.00 0.00 3.27
7792 10837 6.488006 TCCTTTTCCAGAGTTTCTTCAATGAG 59.512 38.462 0.00 0.00 0.00 2.90
7793 10838 6.364701 TCCTTTTCCAGAGTTTCTTCAATGA 58.635 36.000 0.00 0.00 0.00 2.57
7794 10839 6.294397 CCTCCTTTTCCAGAGTTTCTTCAATG 60.294 42.308 0.00 0.00 0.00 2.82
7795 10840 5.772169 CCTCCTTTTCCAGAGTTTCTTCAAT 59.228 40.000 0.00 0.00 0.00 2.57
7796 10841 5.104109 TCCTCCTTTTCCAGAGTTTCTTCAA 60.104 40.000 0.00 0.00 0.00 2.69
7797 10842 4.412199 TCCTCCTTTTCCAGAGTTTCTTCA 59.588 41.667 0.00 0.00 0.00 3.02
7798 10843 4.974399 TCCTCCTTTTCCAGAGTTTCTTC 58.026 43.478 0.00 0.00 0.00 2.87
7799 10844 5.103898 ACTTCCTCCTTTTCCAGAGTTTCTT 60.104 40.000 0.00 0.00 0.00 2.52
7800 10845 4.413851 ACTTCCTCCTTTTCCAGAGTTTCT 59.586 41.667 0.00 0.00 0.00 2.52
7801 10846 4.720046 ACTTCCTCCTTTTCCAGAGTTTC 58.280 43.478 0.00 0.00 0.00 2.78
7802 10847 4.413851 AGACTTCCTCCTTTTCCAGAGTTT 59.586 41.667 0.00 0.00 0.00 2.66
7803 10848 3.977326 AGACTTCCTCCTTTTCCAGAGTT 59.023 43.478 0.00 0.00 0.00 3.01
7804 10849 3.592865 AGACTTCCTCCTTTTCCAGAGT 58.407 45.455 0.00 0.00 0.00 3.24
7805 10850 5.948742 ATAGACTTCCTCCTTTTCCAGAG 57.051 43.478 0.00 0.00 0.00 3.35
7806 10851 5.045578 CCAATAGACTTCCTCCTTTTCCAGA 60.046 44.000 0.00 0.00 0.00 3.86
7807 10852 5.189180 CCAATAGACTTCCTCCTTTTCCAG 58.811 45.833 0.00 0.00 0.00 3.86
7808 10853 4.018415 CCCAATAGACTTCCTCCTTTTCCA 60.018 45.833 0.00 0.00 0.00 3.53
7809 10854 4.018324 ACCCAATAGACTTCCTCCTTTTCC 60.018 45.833 0.00 0.00 0.00 3.13
7810 10855 4.944317 CACCCAATAGACTTCCTCCTTTTC 59.056 45.833 0.00 0.00 0.00 2.29
7811 10856 4.811063 GCACCCAATAGACTTCCTCCTTTT 60.811 45.833 0.00 0.00 0.00 2.27
7812 10857 3.308473 GCACCCAATAGACTTCCTCCTTT 60.308 47.826 0.00 0.00 0.00 3.11
7813 10858 2.239907 GCACCCAATAGACTTCCTCCTT 59.760 50.000 0.00 0.00 0.00 3.36
7814 10859 1.840635 GCACCCAATAGACTTCCTCCT 59.159 52.381 0.00 0.00 0.00 3.69
7815 10860 1.559682 TGCACCCAATAGACTTCCTCC 59.440 52.381 0.00 0.00 0.00 4.30
7816 10861 2.911484 CTGCACCCAATAGACTTCCTC 58.089 52.381 0.00 0.00 0.00 3.71
7817 10862 1.065126 GCTGCACCCAATAGACTTCCT 60.065 52.381 0.00 0.00 0.00 3.36
7818 10863 1.383523 GCTGCACCCAATAGACTTCC 58.616 55.000 0.00 0.00 0.00 3.46
7819 10864 1.009829 CGCTGCACCCAATAGACTTC 58.990 55.000 0.00 0.00 0.00 3.01
7820 10865 0.392998 CCGCTGCACCCAATAGACTT 60.393 55.000 0.00 0.00 0.00 3.01
7821 10866 1.221840 CCGCTGCACCCAATAGACT 59.778 57.895 0.00 0.00 0.00 3.24
7822 10867 0.811616 CTCCGCTGCACCCAATAGAC 60.812 60.000 0.00 0.00 0.00 2.59
7823 10868 1.522092 CTCCGCTGCACCCAATAGA 59.478 57.895 0.00 0.00 0.00 1.98
7824 10869 2.182842 GCTCCGCTGCACCCAATAG 61.183 63.158 0.00 0.00 0.00 1.73
7825 10870 2.124736 GCTCCGCTGCACCCAATA 60.125 61.111 0.00 0.00 0.00 1.90
7835 10880 4.722700 AATTGGCACGGCTCCGCT 62.723 61.111 8.41 0.00 44.19 5.52
7836 10881 4.481112 CAATTGGCACGGCTCCGC 62.481 66.667 8.41 0.00 44.19 5.54
7837 10882 3.814268 CCAATTGGCACGGCTCCG 61.814 66.667 12.53 6.79 46.03 4.63
7847 10892 3.909732 TCCCCATACTTAAGCCAATTGG 58.090 45.455 20.81 20.81 38.53 3.16
7848 10893 4.216257 CGATCCCCATACTTAAGCCAATTG 59.784 45.833 1.29 0.00 0.00 2.32
7849 10894 4.398319 CGATCCCCATACTTAAGCCAATT 58.602 43.478 1.29 0.00 0.00 2.32
7850 10895 3.244911 CCGATCCCCATACTTAAGCCAAT 60.245 47.826 1.29 0.00 0.00 3.16
7851 10896 2.105821 CCGATCCCCATACTTAAGCCAA 59.894 50.000 1.29 0.00 0.00 4.52
7852 10897 1.697432 CCGATCCCCATACTTAAGCCA 59.303 52.381 1.29 0.00 0.00 4.75
7853 10898 1.975680 TCCGATCCCCATACTTAAGCC 59.024 52.381 1.29 0.00 0.00 4.35
7854 10899 3.181458 TGTTCCGATCCCCATACTTAAGC 60.181 47.826 1.29 0.00 0.00 3.09
7855 10900 4.141801 TGTGTTCCGATCCCCATACTTAAG 60.142 45.833 0.00 0.00 0.00 1.85
7856 10901 3.775866 TGTGTTCCGATCCCCATACTTAA 59.224 43.478 0.00 0.00 0.00 1.85
7857 10902 3.376636 TGTGTTCCGATCCCCATACTTA 58.623 45.455 0.00 0.00 0.00 2.24
7858 10903 2.193127 TGTGTTCCGATCCCCATACTT 58.807 47.619 0.00 0.00 0.00 2.24
7859 10904 1.874129 TGTGTTCCGATCCCCATACT 58.126 50.000 0.00 0.00 0.00 2.12
7860 10905 2.681344 GTTTGTGTTCCGATCCCCATAC 59.319 50.000 0.00 0.00 0.00 2.39
7861 10906 2.574369 AGTTTGTGTTCCGATCCCCATA 59.426 45.455 0.00 0.00 0.00 2.74
7862 10907 1.354368 AGTTTGTGTTCCGATCCCCAT 59.646 47.619 0.00 0.00 0.00 4.00
7863 10908 0.768622 AGTTTGTGTTCCGATCCCCA 59.231 50.000 0.00 0.00 0.00 4.96
7864 10909 1.810755 GAAGTTTGTGTTCCGATCCCC 59.189 52.381 0.00 0.00 0.00 4.81
7865 10910 2.779506 AGAAGTTTGTGTTCCGATCCC 58.220 47.619 0.00 0.00 0.00 3.85
7866 10911 3.813166 TGAAGAAGTTTGTGTTCCGATCC 59.187 43.478 0.00 0.00 0.00 3.36
7867 10912 5.205565 GTTGAAGAAGTTTGTGTTCCGATC 58.794 41.667 0.00 0.00 0.00 3.69
7868 10913 4.638421 TGTTGAAGAAGTTTGTGTTCCGAT 59.362 37.500 0.00 0.00 0.00 4.18
7869 10914 4.004314 TGTTGAAGAAGTTTGTGTTCCGA 58.996 39.130 0.00 0.00 0.00 4.55
7870 10915 4.349663 TGTTGAAGAAGTTTGTGTTCCG 57.650 40.909 0.00 0.00 0.00 4.30
7871 10916 7.595311 AAATTGTTGAAGAAGTTTGTGTTCC 57.405 32.000 0.00 0.00 0.00 3.62
7872 10917 7.478355 GCAAAATTGTTGAAGAAGTTTGTGTTC 59.522 33.333 22.61 8.13 39.43 3.18
7873 10918 7.297391 GCAAAATTGTTGAAGAAGTTTGTGTT 58.703 30.769 22.61 0.00 39.43 3.32
7874 10919 6.400940 CGCAAAATTGTTGAAGAAGTTTGTGT 60.401 34.615 23.96 0.00 40.93 3.72
7875 10920 5.953205 CGCAAAATTGTTGAAGAAGTTTGTG 59.047 36.000 22.61 21.79 40.38 3.33
7876 10921 5.866633 TCGCAAAATTGTTGAAGAAGTTTGT 59.133 32.000 22.61 0.00 39.43 2.83
7877 10922 6.177822 GTCGCAAAATTGTTGAAGAAGTTTG 58.822 36.000 19.29 19.29 39.93 2.93
7878 10923 5.004345 CGTCGCAAAATTGTTGAAGAAGTTT 59.996 36.000 0.00 0.00 0.00 2.66
7879 10924 4.499040 CGTCGCAAAATTGTTGAAGAAGTT 59.501 37.500 0.00 0.00 0.00 2.66
7880 10925 4.035017 CGTCGCAAAATTGTTGAAGAAGT 58.965 39.130 0.00 0.00 0.00 3.01
7881 10926 3.421888 CCGTCGCAAAATTGTTGAAGAAG 59.578 43.478 0.00 0.00 0.00 2.85
7882 10927 3.367607 CCGTCGCAAAATTGTTGAAGAA 58.632 40.909 0.00 0.00 0.00 2.52
7883 10928 2.856720 GCCGTCGCAAAATTGTTGAAGA 60.857 45.455 0.00 0.00 34.03 2.87
7884 10929 1.451651 GCCGTCGCAAAATTGTTGAAG 59.548 47.619 0.00 0.00 34.03 3.02
7885 10930 1.482278 GCCGTCGCAAAATTGTTGAA 58.518 45.000 0.00 0.00 34.03 2.69
7886 10931 0.318275 GGCCGTCGCAAAATTGTTGA 60.318 50.000 0.00 0.00 36.38 3.18
7887 10932 0.596083 TGGCCGTCGCAAAATTGTTG 60.596 50.000 0.00 0.00 36.38 3.33
7888 10933 0.318614 CTGGCCGTCGCAAAATTGTT 60.319 50.000 0.00 0.00 36.38 2.83
7889 10934 1.169661 TCTGGCCGTCGCAAAATTGT 61.170 50.000 0.00 0.00 36.38 2.71
7890 10935 0.039617 TTCTGGCCGTCGCAAAATTG 60.040 50.000 0.00 0.00 36.38 2.32
7891 10936 0.240945 CTTCTGGCCGTCGCAAAATT 59.759 50.000 0.00 0.00 36.38 1.82
7892 10937 0.605319 TCTTCTGGCCGTCGCAAAAT 60.605 50.000 0.00 0.00 36.38 1.82
7893 10938 0.816018 TTCTTCTGGCCGTCGCAAAA 60.816 50.000 0.00 0.00 36.38 2.44
7894 10939 1.227704 TTCTTCTGGCCGTCGCAAA 60.228 52.632 0.00 0.00 36.38 3.68
7895 10940 1.667830 CTTCTTCTGGCCGTCGCAA 60.668 57.895 0.00 0.00 36.38 4.85
7896 10941 2.048222 CTTCTTCTGGCCGTCGCA 60.048 61.111 0.00 0.00 36.38 5.10
7897 10942 2.815647 CCTTCTTCTGGCCGTCGC 60.816 66.667 0.00 0.00 0.00 5.19
7898 10943 1.153745 CTCCTTCTTCTGGCCGTCG 60.154 63.158 0.00 0.00 0.00 5.12
7899 10944 0.608640 TTCTCCTTCTTCTGGCCGTC 59.391 55.000 0.00 0.00 0.00 4.79
7900 10945 1.056660 TTTCTCCTTCTTCTGGCCGT 58.943 50.000 0.00 0.00 0.00 5.68
7901 10946 1.443802 GTTTCTCCTTCTTCTGGCCG 58.556 55.000 0.00 0.00 0.00 6.13
7902 10947 1.073923 TGGTTTCTCCTTCTTCTGGCC 59.926 52.381 0.00 0.00 37.07 5.36
7903 10948 2.039084 TCTGGTTTCTCCTTCTTCTGGC 59.961 50.000 0.00 0.00 37.07 4.85
7904 10949 4.512484 GATCTGGTTTCTCCTTCTTCTGG 58.488 47.826 0.00 0.00 37.07 3.86
7905 10950 4.512484 GGATCTGGTTTCTCCTTCTTCTG 58.488 47.826 0.00 0.00 37.07 3.02
7906 10951 3.196685 CGGATCTGGTTTCTCCTTCTTCT 59.803 47.826 0.00 0.00 37.07 2.85
7907 10952 3.526534 CGGATCTGGTTTCTCCTTCTTC 58.473 50.000 0.00 0.00 37.07 2.87
7908 10953 2.237392 CCGGATCTGGTTTCTCCTTCTT 59.763 50.000 12.93 0.00 37.07 2.52
7909 10954 1.834263 CCGGATCTGGTTTCTCCTTCT 59.166 52.381 12.93 0.00 37.07 2.85
7910 10955 1.831736 TCCGGATCTGGTTTCTCCTTC 59.168 52.381 20.32 0.00 37.07 3.46
7911 10956 1.952621 TCCGGATCTGGTTTCTCCTT 58.047 50.000 20.32 0.00 37.07 3.36
7912 10957 1.952621 TTCCGGATCTGGTTTCTCCT 58.047 50.000 20.32 0.00 37.07 3.69
7913 10958 2.027100 AGTTTCCGGATCTGGTTTCTCC 60.027 50.000 20.32 4.26 0.00 3.71
7914 10959 3.336138 AGTTTCCGGATCTGGTTTCTC 57.664 47.619 20.32 7.91 0.00 2.87
7915 10960 3.328050 AGAAGTTTCCGGATCTGGTTTCT 59.672 43.478 20.32 19.03 0.00 2.52
7916 10961 3.676093 AGAAGTTTCCGGATCTGGTTTC 58.324 45.455 20.32 17.43 0.00 2.78
7917 10962 3.790089 AGAAGTTTCCGGATCTGGTTT 57.210 42.857 20.32 10.57 0.00 3.27
7918 10963 3.412386 CAAGAAGTTTCCGGATCTGGTT 58.588 45.455 20.32 7.16 0.00 3.67
7919 10964 2.290323 CCAAGAAGTTTCCGGATCTGGT 60.290 50.000 20.32 0.00 0.00 4.00
7920 10965 2.027192 TCCAAGAAGTTTCCGGATCTGG 60.027 50.000 15.09 15.09 0.00 3.86
7921 10966 3.055819 TCTCCAAGAAGTTTCCGGATCTG 60.056 47.826 4.15 0.00 31.26 2.90
7922 10967 3.173965 TCTCCAAGAAGTTTCCGGATCT 58.826 45.455 4.15 1.20 31.26 2.75
7923 10968 3.611766 TCTCCAAGAAGTTTCCGGATC 57.388 47.619 4.15 0.00 31.26 3.36
7924 10969 3.519510 TCATCTCCAAGAAGTTTCCGGAT 59.480 43.478 4.15 0.00 31.26 4.18
7925 10970 2.903784 TCATCTCCAAGAAGTTTCCGGA 59.096 45.455 0.00 0.00 0.00 5.14
7926 10971 3.334583 TCATCTCCAAGAAGTTTCCGG 57.665 47.619 0.00 0.00 0.00 5.14
7927 10972 3.624861 CCATCATCTCCAAGAAGTTTCCG 59.375 47.826 0.00 0.00 0.00 4.30
7928 10973 3.379688 GCCATCATCTCCAAGAAGTTTCC 59.620 47.826 0.00 0.00 0.00 3.13
7929 10974 4.012374 TGCCATCATCTCCAAGAAGTTTC 58.988 43.478 0.00 0.00 0.00 2.78
7930 10975 4.038271 TGCCATCATCTCCAAGAAGTTT 57.962 40.909 0.00 0.00 0.00 2.66
7931 10976 3.726557 TGCCATCATCTCCAAGAAGTT 57.273 42.857 0.00 0.00 0.00 2.66
7932 10977 3.947612 ATGCCATCATCTCCAAGAAGT 57.052 42.857 0.00 0.00 0.00 3.01
7933 10978 4.700692 CCATATGCCATCATCTCCAAGAAG 59.299 45.833 0.00 0.00 34.22 2.85
7934 10979 4.351704 TCCATATGCCATCATCTCCAAGAA 59.648 41.667 0.00 0.00 34.22 2.52
7935 10980 3.911894 TCCATATGCCATCATCTCCAAGA 59.088 43.478 0.00 0.00 34.22 3.02
7936 10981 4.296621 TCCATATGCCATCATCTCCAAG 57.703 45.455 0.00 0.00 34.22 3.61
7937 10982 4.507869 CCTTCCATATGCCATCATCTCCAA 60.508 45.833 0.00 0.00 34.22 3.53
7938 10983 3.009805 CCTTCCATATGCCATCATCTCCA 59.990 47.826 0.00 0.00 34.22 3.86
7939 10984 3.265221 TCCTTCCATATGCCATCATCTCC 59.735 47.826 0.00 0.00 34.22 3.71
7940 10985 4.564782 TCCTTCCATATGCCATCATCTC 57.435 45.455 0.00 0.00 34.22 2.75
7941 10986 4.600547 TCTTCCTTCCATATGCCATCATCT 59.399 41.667 0.00 0.00 34.22 2.90
7942 10987 4.914983 TCTTCCTTCCATATGCCATCATC 58.085 43.478 0.00 0.00 34.22 2.92
7943 10988 5.222275 ACATCTTCCTTCCATATGCCATCAT 60.222 40.000 0.00 0.00 36.73 2.45
7944 10989 4.105217 ACATCTTCCTTCCATATGCCATCA 59.895 41.667 0.00 0.00 0.00 3.07
7945 10990 4.660168 ACATCTTCCTTCCATATGCCATC 58.340 43.478 0.00 0.00 0.00 3.51
7946 10991 4.736611 ACATCTTCCTTCCATATGCCAT 57.263 40.909 0.00 0.00 0.00 4.40
7947 10992 4.907269 TCTACATCTTCCTTCCATATGCCA 59.093 41.667 0.00 0.00 0.00 4.92
7948 10993 5.012561 AGTCTACATCTTCCTTCCATATGCC 59.987 44.000 0.00 0.00 0.00 4.40
7949 10994 6.107901 AGTCTACATCTTCCTTCCATATGC 57.892 41.667 0.00 0.00 0.00 3.14
7950 10995 7.730084 TGAAGTCTACATCTTCCTTCCATATG 58.270 38.462 0.00 0.00 40.10 1.78
7951 10996 7.921041 TGAAGTCTACATCTTCCTTCCATAT 57.079 36.000 0.00 0.00 40.10 1.78
7952 10997 7.202038 CCATGAAGTCTACATCTTCCTTCCATA 60.202 40.741 0.00 0.00 40.10 2.74
7953 10998 6.409005 CCATGAAGTCTACATCTTCCTTCCAT 60.409 42.308 0.00 0.00 40.10 3.41
7954 10999 5.104776 CCATGAAGTCTACATCTTCCTTCCA 60.105 44.000 0.00 0.00 40.10 3.53
7955 11000 5.363939 CCATGAAGTCTACATCTTCCTTCC 58.636 45.833 0.00 0.00 40.10 3.46
7956 11001 5.129485 TCCCATGAAGTCTACATCTTCCTTC 59.871 44.000 0.00 0.00 40.10 3.46
7957 11002 5.032846 TCCCATGAAGTCTACATCTTCCTT 58.967 41.667 0.00 0.00 40.10 3.36
7958 11003 4.624913 TCCCATGAAGTCTACATCTTCCT 58.375 43.478 0.00 0.00 40.10 3.36
7959 11004 5.359194 TTCCCATGAAGTCTACATCTTCC 57.641 43.478 0.00 0.00 40.10 3.46
7960 11005 7.872113 AATTTCCCATGAAGTCTACATCTTC 57.128 36.000 0.00 0.00 40.89 2.87
7961 11006 9.753674 TTAAATTTCCCATGAAGTCTACATCTT 57.246 29.630 0.00 0.00 0.00 2.40
7962 11007 9.927081 ATTAAATTTCCCATGAAGTCTACATCT 57.073 29.630 0.00 0.00 0.00 2.90
7964 11009 9.927081 AGATTAAATTTCCCATGAAGTCTACAT 57.073 29.630 0.00 0.00 0.00 2.29
7965 11010 9.396022 GAGATTAAATTTCCCATGAAGTCTACA 57.604 33.333 0.00 0.00 0.00 2.74
7966 11011 9.620259 AGAGATTAAATTTCCCATGAAGTCTAC 57.380 33.333 0.00 0.00 0.00 2.59
7967 11012 9.618890 CAGAGATTAAATTTCCCATGAAGTCTA 57.381 33.333 0.00 0.00 0.00 2.59
7968 11013 8.331740 TCAGAGATTAAATTTCCCATGAAGTCT 58.668 33.333 0.00 0.00 0.00 3.24
7969 11014 8.511604 TCAGAGATTAAATTTCCCATGAAGTC 57.488 34.615 0.00 0.00 0.00 3.01
7970 11015 9.484806 AATCAGAGATTAAATTTCCCATGAAGT 57.515 29.630 0.00 0.00 0.00 3.01
7985 11030 9.817809 ACAGCGATTTAAAGTAATCAGAGATTA 57.182 29.630 0.00 0.00 34.83 1.75
7986 11031 8.723942 ACAGCGATTTAAAGTAATCAGAGATT 57.276 30.769 0.00 0.00 34.83 2.40
7987 11032 8.723942 AACAGCGATTTAAAGTAATCAGAGAT 57.276 30.769 0.00 0.00 34.83 2.75
7988 11033 8.547967 AAACAGCGATTTAAAGTAATCAGAGA 57.452 30.769 0.00 0.00 34.83 3.10
7989 11034 9.690434 GTAAACAGCGATTTAAAGTAATCAGAG 57.310 33.333 0.00 0.00 34.83 3.35
7990 11035 9.431887 AGTAAACAGCGATTTAAAGTAATCAGA 57.568 29.630 0.00 0.00 34.83 3.27
7995 11040 9.263538 TCAGAAGTAAACAGCGATTTAAAGTAA 57.736 29.630 0.00 0.00 0.00 2.24
7996 11041 8.821147 TCAGAAGTAAACAGCGATTTAAAGTA 57.179 30.769 0.00 0.00 0.00 2.24
7997 11042 7.724305 TCAGAAGTAAACAGCGATTTAAAGT 57.276 32.000 0.00 0.00 0.00 2.66
7998 11043 8.283291 ACTTCAGAAGTAAACAGCGATTTAAAG 58.717 33.333 14.58 1.07 40.69 1.85
7999 11044 8.149973 ACTTCAGAAGTAAACAGCGATTTAAA 57.850 30.769 14.58 0.00 40.69 1.52
8000 11045 7.724305 ACTTCAGAAGTAAACAGCGATTTAA 57.276 32.000 14.58 0.00 40.69 1.52
8001 11046 7.225931 ACAACTTCAGAAGTAAACAGCGATTTA 59.774 33.333 16.46 0.00 41.91 1.40
8002 11047 6.038271 ACAACTTCAGAAGTAAACAGCGATTT 59.962 34.615 16.46 0.00 41.91 2.17
8003 11048 5.527582 ACAACTTCAGAAGTAAACAGCGATT 59.472 36.000 16.46 0.00 41.91 3.34
8004 11049 5.057149 ACAACTTCAGAAGTAAACAGCGAT 58.943 37.500 16.46 0.00 41.91 4.58
8005 11050 4.439057 ACAACTTCAGAAGTAAACAGCGA 58.561 39.130 16.46 0.00 41.91 4.93
8006 11051 4.795970 ACAACTTCAGAAGTAAACAGCG 57.204 40.909 16.46 2.61 41.91 5.18
8007 11052 6.419771 GTGTACAACTTCAGAAGTAAACAGC 58.580 40.000 16.46 10.92 41.91 4.40
8008 11053 6.018180 GGGTGTACAACTTCAGAAGTAAACAG 60.018 42.308 16.46 7.06 41.91 3.16
8009 11054 5.818857 GGGTGTACAACTTCAGAAGTAAACA 59.181 40.000 16.46 16.20 41.91 2.83
8010 11055 5.818857 TGGGTGTACAACTTCAGAAGTAAAC 59.181 40.000 16.46 14.07 41.91 2.01
8011 11056 5.991861 TGGGTGTACAACTTCAGAAGTAAA 58.008 37.500 16.46 2.42 41.91 2.01
8012 11057 5.617528 TGGGTGTACAACTTCAGAAGTAA 57.382 39.130 16.46 2.78 41.91 2.24
8013 11058 5.617528 TTGGGTGTACAACTTCAGAAGTA 57.382 39.130 16.46 0.00 41.91 2.24
8014 11059 4.497291 TTGGGTGTACAACTTCAGAAGT 57.503 40.909 11.44 10.27 45.46 3.01
8015 11060 4.638421 TGTTTGGGTGTACAACTTCAGAAG 59.362 41.667 11.44 8.77 0.00 2.85
8016 11061 4.590918 TGTTTGGGTGTACAACTTCAGAA 58.409 39.130 11.44 0.00 0.00 3.02
8017 11062 4.223556 TGTTTGGGTGTACAACTTCAGA 57.776 40.909 11.44 0.00 0.00 3.27
8018 11063 4.261572 CCATGTTTGGGTGTACAACTTCAG 60.262 45.833 11.44 0.00 39.56 3.02
8019 11064 3.634448 CCATGTTTGGGTGTACAACTTCA 59.366 43.478 11.44 5.70 39.56 3.02
8020 11065 3.886505 TCCATGTTTGGGTGTACAACTTC 59.113 43.478 11.44 0.00 43.81 3.01
8021 11066 3.904717 TCCATGTTTGGGTGTACAACTT 58.095 40.909 11.44 0.00 43.81 2.66
8022 11067 3.586470 TCCATGTTTGGGTGTACAACT 57.414 42.857 11.44 0.00 43.81 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.