Multiple sequence alignment - TraesCS5D01G116200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G116200 chr5D 100.000 4706 0 0 1 4706 135714381 135709676 0.000000e+00 8691.0
1 TraesCS5D01G116200 chr5D 84.892 139 12 9 2578 2711 456610461 456610327 1.060000e-26 132.0
2 TraesCS5D01G116200 chr5D 93.671 79 5 0 3118 3196 556609912 556609990 8.270000e-23 119.0
3 TraesCS5D01G116200 chr5A 93.890 1964 80 18 666 2608 169184837 169186781 0.000000e+00 2926.0
4 TraesCS5D01G116200 chr5A 95.529 671 21 5 2690 3352 169186780 169187449 0.000000e+00 1064.0
5 TraesCS5D01G116200 chr5A 90.909 484 22 7 3914 4388 169187879 169188349 8.590000e-177 630.0
6 TraesCS5D01G116200 chr5A 86.141 469 22 10 3400 3861 169187461 169187893 2.560000e-127 466.0
7 TraesCS5D01G116200 chr5A 81.291 604 78 21 9 597 698066979 698066396 1.540000e-124 457.0
8 TraesCS5D01G116200 chr5B 94.380 1886 69 18 741 2608 147471669 147469803 0.000000e+00 2861.0
9 TraesCS5D01G116200 chr5B 96.172 1045 27 6 2690 3725 147469804 147468764 0.000000e+00 1696.0
10 TraesCS5D01G116200 chr5B 82.828 594 89 9 9 597 68051574 68052159 1.940000e-143 520.0
11 TraesCS5D01G116200 chr5B 80.364 550 94 11 9 552 399151407 399151948 5.670000e-109 405.0
12 TraesCS5D01G116200 chr5B 82.958 311 39 9 4042 4341 147468447 147468140 7.760000e-68 268.0
13 TraesCS5D01G116200 chr5B 94.444 126 6 1 3914 4038 147468669 147468544 4.810000e-45 193.0
14 TraesCS5D01G116200 chr5B 94.792 96 5 0 3766 3861 147468750 147468655 2.930000e-32 150.0
15 TraesCS5D01G116200 chr5B 95.652 92 4 0 664 755 147473350 147473259 1.060000e-31 148.0
16 TraesCS5D01G116200 chr5B 96.364 55 2 0 3861 3915 687736790 687736736 1.800000e-14 91.6
17 TraesCS5D01G116200 chr2A 90.691 666 60 2 1 665 584584536 584585200 0.000000e+00 885.0
18 TraesCS5D01G116200 chr2A 88.725 612 57 6 1 612 133983581 133982982 0.000000e+00 737.0
19 TraesCS5D01G116200 chr2A 90.566 106 10 0 2587 2692 712843518 712843623 1.770000e-29 141.0
20 TraesCS5D01G116200 chr2A 84.496 129 20 0 1001 1129 142179558 142179686 1.370000e-25 128.0
21 TraesCS5D01G116200 chr2A 91.667 72 2 3 3857 3925 740011730 740011800 3.880000e-16 97.1
22 TraesCS5D01G116200 chr2A 88.333 60 7 0 606 665 760140953 760140894 6.530000e-09 73.1
23 TraesCS5D01G116200 chr7D 89.039 666 70 3 1 665 432950573 432949910 0.000000e+00 822.0
24 TraesCS5D01G116200 chr7D 94.737 95 5 0 2603 2697 618321362 618321456 1.060000e-31 148.0
25 TraesCS5D01G116200 chr7D 92.079 101 8 0 2603 2703 503323180 503323080 4.910000e-30 143.0
26 TraesCS5D01G116200 chr3D 88.468 607 66 3 1 605 177486314 177486918 0.000000e+00 730.0
27 TraesCS5D01G116200 chr3D 87.395 119 12 2 2576 2692 475298944 475298827 2.950000e-27 134.0
28 TraesCS5D01G116200 chr6B 85.192 520 64 10 2718 3233 685161301 685160791 5.400000e-144 521.0
29 TraesCS5D01G116200 chr6B 81.695 590 93 12 1 587 537459500 537458923 1.180000e-130 477.0
30 TraesCS5D01G116200 chr6B 87.297 370 46 1 229 597 644810890 644811259 5.630000e-114 422.0
31 TraesCS5D01G116200 chr6B 76.963 191 28 14 1449 1635 685162128 685161950 1.390000e-15 95.3
32 TraesCS5D01G116200 chr6D 84.411 526 64 16 2739 3256 451102816 451102301 7.030000e-138 501.0
33 TraesCS5D01G116200 chr6D 88.800 125 8 6 2607 2729 27308697 27308577 1.060000e-31 148.0
34 TraesCS5D01G116200 chr3A 80.583 515 89 9 9 520 259835915 259835409 2.050000e-103 387.0
35 TraesCS5D01G116200 chr3A 98.214 56 1 0 3860 3915 715439313 715439258 1.080000e-16 99.0
36 TraesCS5D01G116200 chr2B 82.353 221 33 3 3017 3233 780815297 780815079 2.240000e-43 187.0
37 TraesCS5D01G116200 chr2B 94.737 95 4 1 2607 2700 583156236 583156330 3.790000e-31 147.0
38 TraesCS5D01G116200 chr2B 83.846 130 21 0 1001 1130 190658474 190658603 1.780000e-24 124.0
39 TraesCS5D01G116200 chr2B 96.721 61 1 1 3859 3919 714500956 714500897 3.000000e-17 100.0
40 TraesCS5D01G116200 chr2B 98.214 56 1 0 3860 3915 714737491 714737546 1.080000e-16 99.0
41 TraesCS5D01G116200 chr1B 93.878 98 6 0 2602 2699 28500509 28500412 1.060000e-31 148.0
42 TraesCS5D01G116200 chr1B 93.878 98 5 1 2604 2700 457465705 457465608 3.790000e-31 147.0
43 TraesCS5D01G116200 chr1B 100.000 56 0 0 3860 3915 266111821 266111876 2.320000e-18 104.0
44 TraesCS5D01G116200 chr1B 95.385 65 1 2 3852 3915 100306923 100306986 8.330000e-18 102.0
45 TraesCS5D01G116200 chr2D 84.496 129 20 0 1001 1129 134398807 134398935 1.370000e-25 128.0
46 TraesCS5D01G116200 chr7A 98.214 56 1 0 3860 3915 17281874 17281929 1.080000e-16 99.0
47 TraesCS5D01G116200 chr1A 98.214 56 1 0 3860 3915 575006609 575006554 1.080000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G116200 chr5D 135709676 135714381 4705 True 8691.00 8691 100.000000 1 4706 1 chr5D.!!$R1 4705
1 TraesCS5D01G116200 chr5A 169184837 169188349 3512 False 1271.50 2926 91.617250 666 4388 4 chr5A.!!$F1 3722
2 TraesCS5D01G116200 chr5A 698066396 698066979 583 True 457.00 457 81.291000 9 597 1 chr5A.!!$R1 588
3 TraesCS5D01G116200 chr5B 147468140 147473350 5210 True 886.00 2861 93.066333 664 4341 6 chr5B.!!$R2 3677
4 TraesCS5D01G116200 chr5B 68051574 68052159 585 False 520.00 520 82.828000 9 597 1 chr5B.!!$F1 588
5 TraesCS5D01G116200 chr5B 399151407 399151948 541 False 405.00 405 80.364000 9 552 1 chr5B.!!$F2 543
6 TraesCS5D01G116200 chr2A 584584536 584585200 664 False 885.00 885 90.691000 1 665 1 chr2A.!!$F2 664
7 TraesCS5D01G116200 chr2A 133982982 133983581 599 True 737.00 737 88.725000 1 612 1 chr2A.!!$R1 611
8 TraesCS5D01G116200 chr7D 432949910 432950573 663 True 822.00 822 89.039000 1 665 1 chr7D.!!$R1 664
9 TraesCS5D01G116200 chr3D 177486314 177486918 604 False 730.00 730 88.468000 1 605 1 chr3D.!!$F1 604
10 TraesCS5D01G116200 chr6B 537458923 537459500 577 True 477.00 477 81.695000 1 587 1 chr6B.!!$R1 586
11 TraesCS5D01G116200 chr6B 685160791 685162128 1337 True 308.15 521 81.077500 1449 3233 2 chr6B.!!$R2 1784
12 TraesCS5D01G116200 chr6D 451102301 451102816 515 True 501.00 501 84.411000 2739 3256 1 chr6D.!!$R2 517
13 TraesCS5D01G116200 chr3A 259835409 259835915 506 True 387.00 387 80.583000 9 520 1 chr3A.!!$R1 511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
372 390 1.133761 CCTCTCTACTGATCCGTCCCA 60.134 57.143 0.00 0.0 0.00 4.37 F
1297 2935 1.215173 TGGATGGTCATGGATGGAACC 59.785 52.381 0.00 0.0 0.00 3.62 F
1496 3145 0.305922 GTTCATGTCTGCGCCTATGC 59.694 55.000 4.18 0.0 0.00 3.14 F
1851 3520 1.963515 GCCCTCCATGTCAGTTGTTTT 59.036 47.619 0.00 0.0 0.00 2.43 F
2372 4051 2.378547 TGAAGCCTGGATTGGGTTACTT 59.621 45.455 0.00 0.0 46.38 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1409 3050 1.871039 ACTGCATGGTCAACGTACAAC 59.129 47.619 0.00 0.0 0.00 3.32 R
2312 3988 2.042297 TGGCCACCACTGAAATCCATAA 59.958 45.455 0.00 0.0 0.00 1.90 R
3480 5186 1.065491 CAGTGGTAACTGCATGGGCTA 60.065 52.381 0.00 0.0 46.98 3.93 R
3698 5404 3.610911 GCTAACAGGGCAGATTACTTGT 58.389 45.455 0.00 0.0 0.00 3.16 R
4208 6011 0.400213 ACCACCGAAGCTTCCATTCA 59.600 50.000 20.62 0.0 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 115 2.050714 GACAGTCGTCGTTCGCCA 60.051 61.111 0.00 0.00 39.67 5.69
247 265 3.011517 ATCGCCAAGCCTCCACCT 61.012 61.111 0.00 0.00 0.00 4.00
304 322 3.033764 GTCGTTTCAGTGGCGCGA 61.034 61.111 12.10 0.00 0.00 5.87
336 354 1.162800 GGCCTCTCCGTCAATGATGC 61.163 60.000 0.00 0.00 0.00 3.91
356 374 2.936032 GTGTTGGGGGAGCCCTCT 60.936 66.667 7.03 0.00 44.66 3.69
372 390 1.133761 CCTCTCTACTGATCCGTCCCA 60.134 57.143 0.00 0.00 0.00 4.37
564 587 5.968676 AGCCCTTGTTATAATAGTCACCA 57.031 39.130 0.00 0.00 0.00 4.17
609 632 3.953712 TGCAAAGACAACCTAGATCGA 57.046 42.857 0.00 0.00 0.00 3.59
612 635 3.994392 GCAAAGACAACCTAGATCGAACA 59.006 43.478 0.00 0.00 0.00 3.18
640 663 3.377172 CGAGGTGGCGGATCTTTTAAAAT 59.623 43.478 0.09 0.00 0.00 1.82
645 668 5.163561 GGTGGCGGATCTTTTAAAATGATCA 60.164 40.000 25.20 0.00 38.55 2.92
739 763 3.571401 GCAGGGCTATTGTGCATAAGATT 59.429 43.478 1.43 0.00 37.16 2.40
766 2394 6.422701 CGAAAACCAATATATCCAGTTCGCTA 59.577 38.462 0.00 0.00 0.00 4.26
773 2401 2.295253 ATCCAGTTCGCTACCTTTCG 57.705 50.000 0.00 0.00 0.00 3.46
1297 2935 1.215173 TGGATGGTCATGGATGGAACC 59.785 52.381 0.00 0.00 0.00 3.62
1319 2957 1.452025 GTGAATATGCGTCACGATCGG 59.548 52.381 20.98 8.65 36.35 4.18
1329 2967 2.743664 CGTCACGATCGGGTGGTATATA 59.256 50.000 18.47 0.00 38.46 0.86
1331 2969 4.571984 CGTCACGATCGGGTGGTATATATA 59.428 45.833 18.47 0.00 38.46 0.86
1332 2970 5.503031 CGTCACGATCGGGTGGTATATATAC 60.503 48.000 18.47 13.60 38.46 1.47
1333 2971 4.571984 TCACGATCGGGTGGTATATATACG 59.428 45.833 18.47 5.32 38.46 3.06
1334 2972 3.879295 ACGATCGGGTGGTATATATACGG 59.121 47.826 20.98 4.23 34.11 4.02
1335 2973 3.879295 CGATCGGGTGGTATATATACGGT 59.121 47.826 15.15 1.56 34.11 4.83
1337 2975 5.504665 CGATCGGGTGGTATATATACGGTTC 60.505 48.000 15.15 3.92 34.11 3.62
1338 2976 4.922206 TCGGGTGGTATATATACGGTTCT 58.078 43.478 15.15 0.00 34.11 3.01
1339 2977 5.324409 TCGGGTGGTATATATACGGTTCTT 58.676 41.667 15.15 0.00 34.11 2.52
1343 2981 7.067372 CGGGTGGTATATATACGGTTCTTGATA 59.933 40.741 15.15 0.00 34.11 2.15
1362 3003 2.687700 ACTCTGCTGTGCTTATCAGG 57.312 50.000 0.00 0.00 33.98 3.86
1378 3019 4.696479 ATCAGGTGATACTGGATGTTCC 57.304 45.455 0.00 0.00 38.98 3.62
1379 3020 2.771943 TCAGGTGATACTGGATGTTCCC 59.228 50.000 0.00 0.00 38.98 3.97
1380 3021 2.774234 CAGGTGATACTGGATGTTCCCT 59.226 50.000 0.00 0.00 35.03 4.20
1401 3042 5.186198 CCTTGAAATGTCTACCTTGTAGGG 58.814 45.833 1.72 0.00 40.58 3.53
1402 3043 5.280521 CCTTGAAATGTCTACCTTGTAGGGT 60.281 44.000 1.72 0.00 40.58 4.34
1406 3047 5.354842 AATGTCTACCTTGTAGGGTAAGC 57.645 43.478 1.72 0.00 40.58 3.09
1409 3050 4.222145 TGTCTACCTTGTAGGGTAAGCAAG 59.778 45.833 1.72 0.00 40.58 4.01
1420 3061 3.132925 GGGTAAGCAAGTTGTACGTTGA 58.867 45.455 4.48 0.00 0.00 3.18
1428 3069 2.143122 AGTTGTACGTTGACCATGCAG 58.857 47.619 0.00 0.00 0.00 4.41
1447 3092 7.799914 CCATGCAGTTTTCTTTTCTAAATTTGC 59.200 33.333 0.00 0.00 32.28 3.68
1488 3137 7.467557 TTTGAATTTTTCAGTTCATGTCTGC 57.532 32.000 13.07 0.00 41.38 4.26
1496 3145 0.305922 GTTCATGTCTGCGCCTATGC 59.694 55.000 4.18 0.00 0.00 3.14
1614 3263 7.637709 AAAAGAAAAATCGCATTCCAGTAAC 57.362 32.000 0.00 0.00 0.00 2.50
1716 3385 6.441274 ACTGACTTGTAACATTTGATTGCAG 58.559 36.000 0.00 0.00 0.00 4.41
1823 3492 7.068348 TGGTGTGAATAATAGGTCTAGACTGAC 59.932 40.741 21.88 6.19 36.31 3.51
1851 3520 1.963515 GCCCTCCATGTCAGTTGTTTT 59.036 47.619 0.00 0.00 0.00 2.43
1983 3656 2.569404 TGTGTGTGCATAGTGGTCCATA 59.431 45.455 0.00 0.00 0.00 2.74
1988 3661 4.094887 GTGTGCATAGTGGTCCATAAACTG 59.905 45.833 0.00 0.00 0.00 3.16
2016 3689 3.064931 GCTGTACCACTTGTTGACCTAC 58.935 50.000 0.00 0.00 0.00 3.18
2130 3804 8.492748 CGCAAACTTTCTTACATCTTTGTACTA 58.507 33.333 0.00 0.00 38.05 1.82
2312 3988 5.083533 TGTTTGGCTGAACTGAAAACAAT 57.916 34.783 0.00 0.00 37.68 2.71
2372 4051 2.378547 TGAAGCCTGGATTGGGTTACTT 59.621 45.455 0.00 0.00 46.38 2.24
2373 4052 2.514458 AGCCTGGATTGGGTTACTTG 57.486 50.000 0.00 0.00 33.52 3.16
2616 4301 9.000486 GGATTAAAATCTTATTTACTCCCTCCG 58.000 37.037 2.91 0.00 38.06 4.63
2617 4302 9.557061 GATTAAAATCTTATTTACTCCCTCCGT 57.443 33.333 0.00 0.00 32.66 4.69
2621 4306 8.728337 AAATCTTATTTACTCCCTCCGTAAAC 57.272 34.615 0.00 0.00 39.01 2.01
2622 4307 7.672122 ATCTTATTTACTCCCTCCGTAAACT 57.328 36.000 0.00 0.00 39.01 2.66
2623 4308 8.773033 ATCTTATTTACTCCCTCCGTAAACTA 57.227 34.615 0.00 0.00 39.01 2.24
2624 4309 8.593945 TCTTATTTACTCCCTCCGTAAACTAA 57.406 34.615 0.00 0.00 39.01 2.24
2625 4310 9.205513 TCTTATTTACTCCCTCCGTAAACTAAT 57.794 33.333 0.00 0.00 39.01 1.73
2631 4316 9.866655 TTACTCCCTCCGTAAACTAATATAAGA 57.133 33.333 0.00 0.00 0.00 2.10
2632 4317 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
2633 4318 8.003629 ACTCCCTCCGTAAACTAATATAAGAGT 58.996 37.037 0.00 0.00 0.00 3.24
2634 4319 8.174733 TCCCTCCGTAAACTAATATAAGAGTG 57.825 38.462 0.00 0.00 0.00 3.51
2635 4320 7.781693 TCCCTCCGTAAACTAATATAAGAGTGT 59.218 37.037 0.00 0.00 0.00 3.55
2636 4321 8.419442 CCCTCCGTAAACTAATATAAGAGTGTT 58.581 37.037 0.00 0.00 0.00 3.32
2637 4322 9.813446 CCTCCGTAAACTAATATAAGAGTGTTT 57.187 33.333 0.00 0.00 0.00 2.83
2665 4350 9.680315 GATTACTAATGTAGTGATCTAAACGCT 57.320 33.333 11.11 0.00 44.10 5.07
2666 4351 9.680315 ATTACTAATGTAGTGATCTAAACGCTC 57.320 33.333 0.00 0.00 39.81 5.03
2667 4352 7.336161 ACTAATGTAGTGATCTAAACGCTCT 57.664 36.000 0.00 0.00 37.69 4.09
2668 4353 7.773149 ACTAATGTAGTGATCTAAACGCTCTT 58.227 34.615 0.00 0.00 37.69 2.85
2669 4354 8.900781 ACTAATGTAGTGATCTAAACGCTCTTA 58.099 33.333 0.00 0.00 37.69 2.10
2670 4355 9.900710 CTAATGTAGTGATCTAAACGCTCTTAT 57.099 33.333 0.00 0.00 0.00 1.73
2685 4370 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
2686 4371 8.461249 ACGCTCTTATATTAGTTTACAGAGGA 57.539 34.615 0.00 0.00 0.00 3.71
2687 4372 8.910944 ACGCTCTTATATTAGTTTACAGAGGAA 58.089 33.333 0.00 0.00 0.00 3.36
2688 4373 9.400638 CGCTCTTATATTAGTTTACAGAGGAAG 57.599 37.037 0.00 0.00 0.00 3.46
2841 4526 3.828451 AGTGCCACTTTGTTGCTATTGAT 59.172 39.130 0.00 0.00 0.00 2.57
3256 4946 6.501781 CAACTGAAATAGATTTGAGATGCCC 58.498 40.000 8.23 0.00 35.09 5.36
3261 4951 6.095860 TGAAATAGATTTGAGATGCCCTGTTG 59.904 38.462 0.00 0.00 0.00 3.33
3301 4991 7.850982 GGTGTTGATTAACTAACAAGATATGCG 59.149 37.037 7.66 0.00 38.40 4.73
3338 5036 7.049799 TCTCCTTTTCTTGTTAATTTGGTGG 57.950 36.000 0.00 0.00 0.00 4.61
3375 5073 8.941127 GTTGATTTAACAGTTCATCAACTCTC 57.059 34.615 26.76 12.89 46.42 3.20
3387 5085 8.778358 AGTTCATCAACTCTCTGTATTTGTTTC 58.222 33.333 0.00 0.00 38.62 2.78
3480 5186 9.185680 GTGTTGAAACTACCCCTATGAATAAAT 57.814 33.333 0.00 0.00 0.00 1.40
3698 5404 2.268920 GCTCAAGGACATCGGCCA 59.731 61.111 2.24 0.00 0.00 5.36
3741 5447 3.251729 CCATGGGATGCACTATTTTCTCG 59.748 47.826 2.85 0.00 0.00 4.04
3742 5448 2.917933 TGGGATGCACTATTTTCTCGG 58.082 47.619 0.00 0.00 0.00 4.63
3743 5449 2.222027 GGGATGCACTATTTTCTCGGG 58.778 52.381 0.00 0.00 0.00 5.14
3744 5450 2.421529 GGGATGCACTATTTTCTCGGGT 60.422 50.000 0.00 0.00 0.00 5.28
3745 5451 2.614057 GGATGCACTATTTTCTCGGGTG 59.386 50.000 0.00 0.00 0.00 4.61
3746 5452 2.851263 TGCACTATTTTCTCGGGTGT 57.149 45.000 0.00 0.00 0.00 4.16
3747 5453 2.422597 TGCACTATTTTCTCGGGTGTG 58.577 47.619 0.00 0.00 0.00 3.82
3748 5454 1.130561 GCACTATTTTCTCGGGTGTGC 59.869 52.381 0.00 0.00 41.53 4.57
3749 5455 2.699954 CACTATTTTCTCGGGTGTGCT 58.300 47.619 0.00 0.00 0.00 4.40
3750 5456 3.074412 CACTATTTTCTCGGGTGTGCTT 58.926 45.455 0.00 0.00 0.00 3.91
3751 5457 3.125316 CACTATTTTCTCGGGTGTGCTTC 59.875 47.826 0.00 0.00 0.00 3.86
3752 5458 2.270352 ATTTTCTCGGGTGTGCTTCA 57.730 45.000 0.00 0.00 0.00 3.02
3753 5459 2.270352 TTTTCTCGGGTGTGCTTCAT 57.730 45.000 0.00 0.00 0.00 2.57
3754 5460 2.270352 TTTCTCGGGTGTGCTTCATT 57.730 45.000 0.00 0.00 0.00 2.57
3755 5461 2.270352 TTCTCGGGTGTGCTTCATTT 57.730 45.000 0.00 0.00 0.00 2.32
3756 5462 2.270352 TCTCGGGTGTGCTTCATTTT 57.730 45.000 0.00 0.00 0.00 1.82
3757 5463 2.582052 TCTCGGGTGTGCTTCATTTTT 58.418 42.857 0.00 0.00 0.00 1.94
3846 5552 8.245195 AGGAATTTTACCTTTTTGCAGAACTA 57.755 30.769 0.00 0.00 33.55 2.24
3847 5553 8.700973 AGGAATTTTACCTTTTTGCAGAACTAA 58.299 29.630 0.00 0.00 33.55 2.24
3848 5554 8.978539 GGAATTTTACCTTTTTGCAGAACTAAG 58.021 33.333 0.00 0.00 0.00 2.18
3849 5555 9.529325 GAATTTTACCTTTTTGCAGAACTAAGT 57.471 29.630 0.00 0.00 0.00 2.24
3850 5556 9.884636 AATTTTACCTTTTTGCAGAACTAAGTT 57.115 25.926 0.00 0.00 0.00 2.66
3851 5557 8.696410 TTTTACCTTTTTGCAGAACTAAGTTG 57.304 30.769 0.00 0.00 0.00 3.16
3852 5558 5.914898 ACCTTTTTGCAGAACTAAGTTGT 57.085 34.783 0.00 0.00 0.00 3.32
3853 5559 5.891451 ACCTTTTTGCAGAACTAAGTTGTC 58.109 37.500 0.00 0.00 0.00 3.18
3854 5560 5.417580 ACCTTTTTGCAGAACTAAGTTGTCA 59.582 36.000 0.00 0.00 0.00 3.58
3855 5561 5.973565 CCTTTTTGCAGAACTAAGTTGTCAG 59.026 40.000 0.00 0.00 0.00 3.51
3856 5562 6.404734 CCTTTTTGCAGAACTAAGTTGTCAGT 60.405 38.462 0.00 0.00 0.00 3.41
3857 5563 5.484173 TTTGCAGAACTAAGTTGTCAGTG 57.516 39.130 0.00 0.00 0.00 3.66
3858 5564 4.137116 TGCAGAACTAAGTTGTCAGTGT 57.863 40.909 0.00 0.00 0.00 3.55
3859 5565 4.513442 TGCAGAACTAAGTTGTCAGTGTT 58.487 39.130 0.00 0.00 0.00 3.32
3860 5566 4.941263 TGCAGAACTAAGTTGTCAGTGTTT 59.059 37.500 0.00 0.00 0.00 2.83
3861 5567 5.414454 TGCAGAACTAAGTTGTCAGTGTTTT 59.586 36.000 0.00 0.00 0.00 2.43
3862 5568 6.072175 TGCAGAACTAAGTTGTCAGTGTTTTT 60.072 34.615 0.00 0.00 0.00 1.94
3885 5591 3.878160 TTTTGAAACGGAGGCAAAAGT 57.122 38.095 0.00 0.00 36.80 2.66
3886 5592 3.878160 TTTGAAACGGAGGCAAAAGTT 57.122 38.095 0.00 0.00 0.00 2.66
3887 5593 3.878160 TTGAAACGGAGGCAAAAGTTT 57.122 38.095 0.00 0.37 39.21 2.66
3888 5594 3.878160 TGAAACGGAGGCAAAAGTTTT 57.122 38.095 0.00 0.00 37.00 2.43
3889 5595 3.516615 TGAAACGGAGGCAAAAGTTTTG 58.483 40.909 21.60 21.60 37.00 2.44
3890 5596 1.934589 AACGGAGGCAAAAGTTTTGC 58.065 45.000 34.99 34.99 44.22 3.68
3898 5604 3.110447 GCAAAAGTTTTGCCTCATCCA 57.890 42.857 33.57 0.00 39.38 3.41
3899 5605 3.667360 GCAAAAGTTTTGCCTCATCCAT 58.333 40.909 33.57 0.00 39.38 3.41
3900 5606 4.067192 GCAAAAGTTTTGCCTCATCCATT 58.933 39.130 33.57 0.00 39.38 3.16
3901 5607 5.237048 GCAAAAGTTTTGCCTCATCCATTA 58.763 37.500 33.57 0.00 39.38 1.90
3902 5608 5.700373 GCAAAAGTTTTGCCTCATCCATTAA 59.300 36.000 33.57 0.00 39.38 1.40
3903 5609 6.372381 GCAAAAGTTTTGCCTCATCCATTAAT 59.628 34.615 33.57 0.00 39.38 1.40
3904 5610 7.094677 GCAAAAGTTTTGCCTCATCCATTAATT 60.095 33.333 33.57 0.00 39.38 1.40
3905 5611 9.434420 CAAAAGTTTTGCCTCATCCATTAATTA 57.566 29.630 15.06 0.00 0.00 1.40
3907 5613 9.657419 AAAGTTTTGCCTCATCCATTAATTAAG 57.343 29.630 3.94 0.00 0.00 1.85
3908 5614 8.593945 AGTTTTGCCTCATCCATTAATTAAGA 57.406 30.769 3.94 0.00 0.00 2.10
3909 5615 9.205513 AGTTTTGCCTCATCCATTAATTAAGAT 57.794 29.630 3.94 0.00 0.00 2.40
3931 5637 4.965119 AGAAAGTTGTCAGTGTTTGGTC 57.035 40.909 0.00 0.00 0.00 4.02
4078 5879 4.614555 TGCTATAAATTGAGCAACACCG 57.385 40.909 7.33 0.00 45.47 4.94
4092 5893 4.922026 ACCGGGCCGTGTTGTGTC 62.922 66.667 26.32 0.00 0.00 3.67
4196 5999 6.724694 GCAGATGATTTTTGTTGCCAATTA 57.275 33.333 0.00 0.00 0.00 1.40
4197 6000 7.311364 GCAGATGATTTTTGTTGCCAATTAT 57.689 32.000 0.00 0.00 0.00 1.28
4208 6011 5.862845 TGTTGCCAATTATTTTGTCATGGT 58.137 33.333 0.00 0.00 0.00 3.55
4229 6032 1.200020 GAATGGAAGCTTCGGTGGTTG 59.800 52.381 19.91 0.00 0.00 3.77
4241 6044 5.671493 CTTCGGTGGTTGGATTATTACTCT 58.329 41.667 0.00 0.00 0.00 3.24
4279 6116 5.581126 AAGTTGCTTTCTGTCATTGTCAA 57.419 34.783 0.00 0.00 0.00 3.18
4311 6148 1.675641 GGCATCCTCACGCAAGGTT 60.676 57.895 3.80 0.00 46.39 3.50
4377 6219 3.903208 GAGTGAGCTCTCTCCCTCT 57.097 57.895 27.90 10.17 39.69 3.69
4384 6226 2.124653 TCTCTCCCTCTCGCGACC 60.125 66.667 3.71 0.00 0.00 4.79
4418 6260 3.721706 CACCCCTGGCACCTCCTC 61.722 72.222 0.00 0.00 35.26 3.71
4422 6264 3.406200 CCTGGCACCTCCTCCCAG 61.406 72.222 0.00 0.00 44.49 4.45
4424 6266 2.284921 TGGCACCTCCTCCCAGAG 60.285 66.667 0.00 0.00 35.26 3.35
4425 6267 3.791586 GGCACCTCCTCCCAGAGC 61.792 72.222 0.00 0.00 32.17 4.09
4426 6268 3.791586 GCACCTCCTCCCAGAGCC 61.792 72.222 0.00 0.00 32.17 4.70
4427 6269 3.086600 CACCTCCTCCCAGAGCCC 61.087 72.222 0.00 0.00 32.17 5.19
4428 6270 3.288381 ACCTCCTCCCAGAGCCCT 61.288 66.667 0.00 0.00 32.17 5.19
4429 6271 2.445654 CCTCCTCCCAGAGCCCTC 60.446 72.222 0.00 0.00 32.17 4.30
4430 6272 2.445654 CTCCTCCCAGAGCCCTCC 60.446 72.222 0.00 0.00 0.00 4.30
4431 6273 4.095400 TCCTCCCAGAGCCCTCCC 62.095 72.222 0.00 0.00 0.00 4.30
4435 6277 4.767892 CCCAGAGCCCTCCCCCTT 62.768 72.222 0.00 0.00 0.00 3.95
4436 6278 2.615288 CCAGAGCCCTCCCCCTTT 60.615 66.667 0.00 0.00 0.00 3.11
4437 6279 2.684499 CCAGAGCCCTCCCCCTTTC 61.684 68.421 0.00 0.00 0.00 2.62
4438 6280 2.286502 AGAGCCCTCCCCCTTTCC 60.287 66.667 0.00 0.00 0.00 3.13
4439 6281 2.286502 GAGCCCTCCCCCTTTCCT 60.287 66.667 0.00 0.00 0.00 3.36
4440 6282 2.286502 AGCCCTCCCCCTTTCCTC 60.287 66.667 0.00 0.00 0.00 3.71
4441 6283 3.421386 GCCCTCCCCCTTTCCTCC 61.421 72.222 0.00 0.00 0.00 4.30
4442 6284 2.461637 CCCTCCCCCTTTCCTCCT 59.538 66.667 0.00 0.00 0.00 3.69
4443 6285 1.230314 CCCTCCCCCTTTCCTCCTT 60.230 63.158 0.00 0.00 0.00 3.36
4444 6286 1.282653 CCCTCCCCCTTTCCTCCTTC 61.283 65.000 0.00 0.00 0.00 3.46
4445 6287 1.282653 CCTCCCCCTTTCCTCCTTCC 61.283 65.000 0.00 0.00 0.00 3.46
4446 6288 0.253394 CTCCCCCTTTCCTCCTTCCT 60.253 60.000 0.00 0.00 0.00 3.36
4447 6289 0.253207 TCCCCCTTTCCTCCTTCCTC 60.253 60.000 0.00 0.00 0.00 3.71
4448 6290 1.627297 CCCCCTTTCCTCCTTCCTCG 61.627 65.000 0.00 0.00 0.00 4.63
4449 6291 0.910088 CCCCTTTCCTCCTTCCTCGT 60.910 60.000 0.00 0.00 0.00 4.18
4450 6292 0.537653 CCCTTTCCTCCTTCCTCGTC 59.462 60.000 0.00 0.00 0.00 4.20
4451 6293 0.173708 CCTTTCCTCCTTCCTCGTCG 59.826 60.000 0.00 0.00 0.00 5.12
4452 6294 0.889306 CTTTCCTCCTTCCTCGTCGT 59.111 55.000 0.00 0.00 0.00 4.34
4453 6295 0.886563 TTTCCTCCTTCCTCGTCGTC 59.113 55.000 0.00 0.00 0.00 4.20
4454 6296 1.303799 TTCCTCCTTCCTCGTCGTCG 61.304 60.000 0.00 0.00 38.55 5.12
4455 6297 2.039405 CCTCCTTCCTCGTCGTCGT 61.039 63.158 1.33 0.00 38.33 4.34
4456 6298 1.424635 CTCCTTCCTCGTCGTCGTC 59.575 63.158 1.33 0.00 38.33 4.20
4457 6299 2.097918 CCTTCCTCGTCGTCGTCG 59.902 66.667 5.50 5.50 38.33 5.12
4458 6300 2.573689 CTTCCTCGTCGTCGTCGC 60.574 66.667 7.01 0.00 38.33 5.19
4459 6301 3.024782 CTTCCTCGTCGTCGTCGCT 62.025 63.158 7.01 0.00 38.33 4.93
4460 6302 3.304764 TTCCTCGTCGTCGTCGCTG 62.305 63.158 7.01 2.96 38.33 5.18
4461 6303 4.813526 CCTCGTCGTCGTCGCTGG 62.814 72.222 7.01 7.93 38.33 4.85
4507 6349 2.751837 CCGCTGGCCTTTCCCTTC 60.752 66.667 3.32 0.00 0.00 3.46
4508 6350 2.352805 CGCTGGCCTTTCCCTTCT 59.647 61.111 3.32 0.00 0.00 2.85
4509 6351 1.746991 CGCTGGCCTTTCCCTTCTC 60.747 63.158 3.32 0.00 0.00 2.87
4510 6352 1.379176 GCTGGCCTTTCCCTTCTCC 60.379 63.158 3.32 0.00 0.00 3.71
4511 6353 1.078143 CTGGCCTTTCCCTTCTCCG 60.078 63.158 3.32 0.00 0.00 4.63
4512 6354 2.272471 GGCCTTTCCCTTCTCCGG 59.728 66.667 0.00 0.00 0.00 5.14
4513 6355 2.603652 GGCCTTTCCCTTCTCCGGT 61.604 63.158 0.00 0.00 0.00 5.28
4514 6356 1.269703 GGCCTTTCCCTTCTCCGGTA 61.270 60.000 0.00 0.00 0.00 4.02
4515 6357 0.178301 GCCTTTCCCTTCTCCGGTAG 59.822 60.000 0.00 0.00 0.00 3.18
4516 6358 1.569653 CCTTTCCCTTCTCCGGTAGT 58.430 55.000 0.00 0.00 0.00 2.73
4517 6359 1.207329 CCTTTCCCTTCTCCGGTAGTG 59.793 57.143 0.00 0.00 0.00 2.74
4518 6360 0.611714 TTTCCCTTCTCCGGTAGTGC 59.388 55.000 0.00 0.00 0.00 4.40
4519 6361 1.262640 TTCCCTTCTCCGGTAGTGCC 61.263 60.000 0.00 0.00 0.00 5.01
4537 6379 4.074526 GACGCAGGGCAGAGCAGA 62.075 66.667 0.00 0.00 0.00 4.26
4538 6380 4.079850 ACGCAGGGCAGAGCAGAG 62.080 66.667 0.00 0.00 0.00 3.35
4546 6388 4.463879 CAGAGCAGAGCCGTGGGG 62.464 72.222 0.00 0.00 0.00 4.96
4548 6390 4.767255 GAGCAGAGCCGTGGGGTG 62.767 72.222 0.00 0.00 31.55 4.61
4554 6396 4.715130 AGCCGTGGGGTGCTCCTA 62.715 66.667 4.53 0.00 30.33 2.94
4555 6397 4.162690 GCCGTGGGGTGCTCCTAG 62.163 72.222 4.53 0.00 34.97 3.02
4556 6398 3.470888 CCGTGGGGTGCTCCTAGG 61.471 72.222 0.82 0.82 35.33 3.02
4557 6399 4.162690 CGTGGGGTGCTCCTAGGC 62.163 72.222 2.96 0.00 35.33 3.93
4558 6400 4.162690 GTGGGGTGCTCCTAGGCG 62.163 72.222 2.96 0.00 35.33 5.52
4561 6403 4.162690 GGGTGCTCCTAGGCGGTG 62.163 72.222 2.96 0.00 34.52 4.94
4562 6404 3.391382 GGTGCTCCTAGGCGGTGT 61.391 66.667 2.96 0.00 34.52 4.16
4563 6405 2.184579 GTGCTCCTAGGCGGTGTC 59.815 66.667 2.96 0.00 34.52 3.67
4564 6406 3.449227 TGCTCCTAGGCGGTGTCG 61.449 66.667 2.96 0.00 39.81 4.35
4565 6407 4.208686 GCTCCTAGGCGGTGTCGG 62.209 72.222 2.96 0.00 36.79 4.79
4566 6408 2.754658 CTCCTAGGCGGTGTCGGT 60.755 66.667 2.96 0.00 36.79 4.69
4567 6409 2.753043 TCCTAGGCGGTGTCGGTC 60.753 66.667 2.96 0.00 36.79 4.79
4568 6410 3.834799 CCTAGGCGGTGTCGGTCC 61.835 72.222 0.00 0.00 36.79 4.46
4593 6435 4.263572 TGGTGGGGTTGCCACTCG 62.264 66.667 0.00 0.00 38.17 4.18
4595 6437 4.265056 GTGGGGTTGCCACTCGGT 62.265 66.667 0.00 0.00 35.53 4.69
4596 6438 3.948719 TGGGGTTGCCACTCGGTC 61.949 66.667 0.00 0.00 33.28 4.79
4597 6439 3.637273 GGGGTTGCCACTCGGTCT 61.637 66.667 0.00 0.00 33.28 3.85
4598 6440 2.288025 GGGGTTGCCACTCGGTCTA 61.288 63.158 0.00 0.00 33.28 2.59
4599 6441 1.218316 GGGTTGCCACTCGGTCTAG 59.782 63.158 0.00 0.00 33.28 2.43
4600 6442 1.255667 GGGTTGCCACTCGGTCTAGA 61.256 60.000 0.00 0.00 33.28 2.43
4601 6443 0.824759 GGTTGCCACTCGGTCTAGAT 59.175 55.000 0.00 0.00 33.28 1.98
4602 6444 1.202428 GGTTGCCACTCGGTCTAGATC 60.202 57.143 0.00 0.00 33.28 2.75
4603 6445 1.751924 GTTGCCACTCGGTCTAGATCT 59.248 52.381 0.00 0.00 33.28 2.75
4604 6446 2.145397 TGCCACTCGGTCTAGATCTT 57.855 50.000 0.00 0.00 33.28 2.40
4605 6447 1.751351 TGCCACTCGGTCTAGATCTTG 59.249 52.381 0.00 0.00 33.28 3.02
4606 6448 1.751924 GCCACTCGGTCTAGATCTTGT 59.248 52.381 0.00 0.00 33.28 3.16
4607 6449 2.223618 GCCACTCGGTCTAGATCTTGTC 60.224 54.545 0.00 0.00 33.28 3.18
4608 6450 2.359531 CCACTCGGTCTAGATCTTGTCC 59.640 54.545 0.00 5.39 0.00 4.02
4609 6451 2.359531 CACTCGGTCTAGATCTTGTCCC 59.640 54.545 13.05 9.28 0.00 4.46
4610 6452 2.242708 ACTCGGTCTAGATCTTGTCCCT 59.757 50.000 13.05 0.00 0.00 4.20
4611 6453 3.292460 CTCGGTCTAGATCTTGTCCCTT 58.708 50.000 13.05 0.00 0.00 3.95
4612 6454 3.702045 CTCGGTCTAGATCTTGTCCCTTT 59.298 47.826 13.05 0.00 0.00 3.11
4613 6455 3.447586 TCGGTCTAGATCTTGTCCCTTTG 59.552 47.826 13.05 2.12 0.00 2.77
4614 6456 3.430929 CGGTCTAGATCTTGTCCCTTTGG 60.431 52.174 13.05 0.00 0.00 3.28
4615 6457 3.118223 GGTCTAGATCTTGTCCCTTTGGG 60.118 52.174 0.00 0.00 46.11 4.12
4635 6477 4.954118 TGGCTCCCTCCCACACGT 62.954 66.667 0.00 0.00 0.00 4.49
4636 6478 4.083862 GGCTCCCTCCCACACGTC 62.084 72.222 0.00 0.00 0.00 4.34
4637 6479 4.436998 GCTCCCTCCCACACGTCG 62.437 72.222 0.00 0.00 0.00 5.12
4638 6480 3.760035 CTCCCTCCCACACGTCGG 61.760 72.222 0.00 0.00 0.00 4.79
4642 6484 4.003788 CTCCCACACGTCGGCCTT 62.004 66.667 0.00 0.00 0.00 4.35
4643 6485 4.308458 TCCCACACGTCGGCCTTG 62.308 66.667 0.00 0.00 0.00 3.61
4645 6487 4.308458 CCACACGTCGGCCTTGGA 62.308 66.667 0.00 0.00 0.00 3.53
4646 6488 2.738521 CACACGTCGGCCTTGGAG 60.739 66.667 0.00 0.00 0.00 3.86
4647 6489 4.003788 ACACGTCGGCCTTGGAGG 62.004 66.667 0.00 0.00 38.80 4.30
4648 6490 4.003788 CACGTCGGCCTTGGAGGT 62.004 66.667 0.00 0.00 37.80 3.85
4649 6491 4.003788 ACGTCGGCCTTGGAGGTG 62.004 66.667 0.00 0.00 37.80 4.00
4650 6492 4.760047 CGTCGGCCTTGGAGGTGG 62.760 72.222 0.00 0.00 37.80 4.61
4651 6493 3.637273 GTCGGCCTTGGAGGTGGT 61.637 66.667 0.00 0.00 37.80 4.16
4652 6494 2.852075 TCGGCCTTGGAGGTGGTT 60.852 61.111 0.00 0.00 37.80 3.67
4653 6495 2.359975 CGGCCTTGGAGGTGGTTC 60.360 66.667 0.00 0.00 37.80 3.62
4654 6496 2.035783 GGCCTTGGAGGTGGTTCC 59.964 66.667 0.00 0.00 37.80 3.62
4655 6497 2.035783 GCCTTGGAGGTGGTTCCC 59.964 66.667 0.00 0.00 37.80 3.97
4656 6498 2.539081 GCCTTGGAGGTGGTTCCCT 61.539 63.158 0.00 0.00 37.80 4.20
4661 6503 2.606826 GAGGTGGTTCCCTCCCGT 60.607 66.667 0.00 0.00 44.49 5.28
4662 6504 2.928396 AGGTGGTTCCCTCCCGTG 60.928 66.667 0.00 0.00 37.86 4.94
4663 6505 4.717313 GGTGGTTCCCTCCCGTGC 62.717 72.222 0.00 0.00 31.54 5.34
4664 6506 3.637273 GTGGTTCCCTCCCGTGCT 61.637 66.667 0.00 0.00 0.00 4.40
4665 6507 3.636231 TGGTTCCCTCCCGTGCTG 61.636 66.667 0.00 0.00 0.00 4.41
4667 6509 4.021925 GTTCCCTCCCGTGCTGCT 62.022 66.667 0.00 0.00 0.00 4.24
4668 6510 3.706373 TTCCCTCCCGTGCTGCTC 61.706 66.667 0.00 0.00 0.00 4.26
4680 6522 2.889503 CTGCTCCGCTGCTGCTAC 60.890 66.667 14.03 1.02 36.97 3.58
4681 6523 3.368190 CTGCTCCGCTGCTGCTACT 62.368 63.158 14.03 0.00 36.97 2.57
4682 6524 2.584694 GCTCCGCTGCTGCTACTC 60.585 66.667 14.03 0.00 36.97 2.59
4683 6525 2.105930 CTCCGCTGCTGCTACTCC 59.894 66.667 14.03 0.00 36.97 3.85
4684 6526 2.363018 TCCGCTGCTGCTACTCCT 60.363 61.111 14.03 0.00 36.97 3.69
4685 6527 2.202851 CCGCTGCTGCTACTCCTG 60.203 66.667 14.03 0.00 36.97 3.86
4686 6528 2.714991 CCGCTGCTGCTACTCCTGA 61.715 63.158 14.03 0.00 36.97 3.86
4687 6529 1.518133 CGCTGCTGCTACTCCTGAC 60.518 63.158 14.03 0.00 36.97 3.51
4688 6530 1.518133 GCTGCTGCTACTCCTGACG 60.518 63.158 8.53 0.00 36.03 4.35
4689 6531 1.518133 CTGCTGCTACTCCTGACGC 60.518 63.158 0.00 0.00 0.00 5.19
4690 6532 2.202810 GCTGCTACTCCTGACGCC 60.203 66.667 0.00 0.00 0.00 5.68
4691 6533 2.716017 GCTGCTACTCCTGACGCCT 61.716 63.158 0.00 0.00 0.00 5.52
4692 6534 1.140589 CTGCTACTCCTGACGCCTG 59.859 63.158 0.00 0.00 0.00 4.85
4693 6535 1.304134 TGCTACTCCTGACGCCTGA 60.304 57.895 0.00 0.00 0.00 3.86
4694 6536 0.684479 TGCTACTCCTGACGCCTGAT 60.684 55.000 0.00 0.00 0.00 2.90
4695 6537 0.249238 GCTACTCCTGACGCCTGATG 60.249 60.000 0.00 0.00 0.00 3.07
4696 6538 0.249238 CTACTCCTGACGCCTGATGC 60.249 60.000 0.00 0.00 0.00 3.91
4697 6539 0.684479 TACTCCTGACGCCTGATGCT 60.684 55.000 0.00 0.00 38.05 3.79
4698 6540 1.220206 CTCCTGACGCCTGATGCTT 59.780 57.895 0.00 0.00 38.05 3.91
4699 6541 0.809241 CTCCTGACGCCTGATGCTTC 60.809 60.000 0.00 0.00 38.66 3.86
4700 6542 1.220206 CCTGACGCCTGATGCTTCT 59.780 57.895 0.88 0.00 38.94 2.85
4701 6543 0.809241 CCTGACGCCTGATGCTTCTC 60.809 60.000 0.88 0.00 38.94 2.87
4702 6544 0.175302 CTGACGCCTGATGCTTCTCT 59.825 55.000 0.88 0.00 38.94 3.10
4703 6545 0.174389 TGACGCCTGATGCTTCTCTC 59.826 55.000 0.88 0.00 38.94 3.20
4704 6546 0.529555 GACGCCTGATGCTTCTCTCC 60.530 60.000 0.88 0.00 35.46 3.71
4705 6547 1.591059 CGCCTGATGCTTCTCTCCG 60.591 63.158 0.88 0.00 38.05 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
247 265 2.434185 GCACTTCCGCCGATGTCA 60.434 61.111 0.00 0.00 0.00 3.58
356 374 0.755698 GGCTGGGACGGATCAGTAGA 60.756 60.000 0.00 0.00 36.31 2.59
453 476 3.647824 GCATCTCTGCGTATGGGC 58.352 61.111 0.00 0.00 38.92 5.36
623 646 5.450412 GCTGATCATTTTAAAAGATCCGCCA 60.450 40.000 25.31 14.76 40.71 5.69
640 663 4.492160 GCGTCGGTCGGCTGATCA 62.492 66.667 0.00 0.00 40.26 2.92
739 763 5.756347 CGAACTGGATATATTGGTTTTCGGA 59.244 40.000 0.00 0.00 31.88 4.55
766 2394 1.597027 CGAGGGCACAACGAAAGGT 60.597 57.895 0.00 0.00 0.00 3.50
1247 2880 7.009815 CGTAGGAAAATAAAGAGATTGCACGTA 59.990 37.037 0.00 0.00 0.00 3.57
1248 2881 6.183360 CGTAGGAAAATAAAGAGATTGCACGT 60.183 38.462 0.00 0.00 0.00 4.49
1297 2935 2.151924 CGATCGTGACGCATATTCACAG 59.848 50.000 7.03 1.10 43.09 3.66
1319 2957 8.964772 AGTATCAAGAACCGTATATATACCACC 58.035 37.037 15.70 4.74 0.00 4.61
1329 2967 4.402793 ACAGCAGAGTATCAAGAACCGTAT 59.597 41.667 0.00 0.00 37.82 3.06
1331 2969 2.563179 ACAGCAGAGTATCAAGAACCGT 59.437 45.455 0.00 0.00 37.82 4.83
1332 2970 2.926200 CACAGCAGAGTATCAAGAACCG 59.074 50.000 0.00 0.00 37.82 4.44
1333 2971 2.675348 GCACAGCAGAGTATCAAGAACC 59.325 50.000 0.00 0.00 37.82 3.62
1334 2972 3.594134 AGCACAGCAGAGTATCAAGAAC 58.406 45.455 0.00 0.00 37.82 3.01
1335 2973 3.969287 AGCACAGCAGAGTATCAAGAA 57.031 42.857 0.00 0.00 37.82 2.52
1337 2975 5.354767 TGATAAGCACAGCAGAGTATCAAG 58.645 41.667 0.00 0.00 37.82 3.02
1338 2976 5.343307 TGATAAGCACAGCAGAGTATCAA 57.657 39.130 0.00 0.00 37.82 2.57
1339 2977 4.202192 CCTGATAAGCACAGCAGAGTATCA 60.202 45.833 4.57 0.00 33.87 2.15
1343 2981 1.905215 ACCTGATAAGCACAGCAGAGT 59.095 47.619 4.57 0.00 34.47 3.24
1362 3003 4.487714 TCAAGGGAACATCCAGTATCAC 57.512 45.455 0.00 0.00 38.64 3.06
1378 3019 5.186198 CCCTACAAGGTAGACATTTCAAGG 58.814 45.833 5.02 0.00 31.93 3.61
1379 3020 5.805728 ACCCTACAAGGTAGACATTTCAAG 58.194 41.667 5.02 0.00 38.79 3.02
1380 3021 5.836024 ACCCTACAAGGTAGACATTTCAA 57.164 39.130 5.02 0.00 38.79 2.69
1401 3042 3.556775 TGGTCAACGTACAACTTGCTTAC 59.443 43.478 0.00 0.00 0.00 2.34
1402 3043 3.794717 TGGTCAACGTACAACTTGCTTA 58.205 40.909 0.00 0.00 0.00 3.09
1406 3047 2.289274 TGCATGGTCAACGTACAACTTG 59.711 45.455 0.00 0.00 0.00 3.16
1409 3050 1.871039 ACTGCATGGTCAACGTACAAC 59.129 47.619 0.00 0.00 0.00 3.32
1420 3061 8.829612 CAAATTTAGAAAAGAAAACTGCATGGT 58.170 29.630 0.00 0.00 0.00 3.55
1452 3097 9.878667 ACTGAAAAATTCAAATGATGCATATGA 57.121 25.926 6.97 0.00 39.58 2.15
1496 3145 6.694844 CAGCCTATACTGCTAATATGATGACG 59.305 42.308 0.00 0.00 36.81 4.35
1500 3149 6.441924 ACACCAGCCTATACTGCTAATATGAT 59.558 38.462 0.00 0.00 36.81 2.45
1504 3153 6.549242 TCTACACCAGCCTATACTGCTAATA 58.451 40.000 0.00 0.00 36.81 0.98
1602 3251 5.803020 AAGAAAGATCGTTACTGGAATGC 57.197 39.130 0.00 0.00 0.00 3.56
1605 3254 9.496873 TCAAATTAAGAAAGATCGTTACTGGAA 57.503 29.630 0.00 0.00 0.00 3.53
1614 3263 8.669243 AGCCTAGTTTCAAATTAAGAAAGATCG 58.331 33.333 6.31 0.00 35.81 3.69
1637 3286 4.943705 TCAAACAATAGGAATCTGACAGCC 59.056 41.667 0.00 0.00 0.00 4.85
1823 3492 2.426024 CTGACATGGAGGGCAAATCAAG 59.574 50.000 0.00 0.00 0.00 3.02
1872 3543 6.425721 ACAAAGTCAAAATCCATCAATGCTTG 59.574 34.615 0.00 0.00 0.00 4.01
1939 3610 6.658816 ACAGCATGGTCAATCAAATACTTACA 59.341 34.615 0.00 0.00 43.62 2.41
1940 3611 6.968904 CACAGCATGGTCAATCAAATACTTAC 59.031 38.462 0.00 0.00 43.62 2.34
1941 3612 6.658816 ACACAGCATGGTCAATCAAATACTTA 59.341 34.615 0.00 0.00 43.62 2.24
1944 3615 5.097529 CACACAGCATGGTCAATCAAATAC 58.902 41.667 0.00 0.00 43.62 1.89
1945 3616 4.766373 ACACACAGCATGGTCAATCAAATA 59.234 37.500 0.00 0.00 43.62 1.40
1983 3656 3.849563 TGGTACAGCCAACTACAGTTT 57.150 42.857 0.00 0.00 45.94 2.66
2016 3689 5.957842 TGCAGATAAGTTAACAACCTTGG 57.042 39.130 8.61 0.00 0.00 3.61
2104 3777 7.352739 AGTACAAAGATGTAAGAAAGTTTGCG 58.647 34.615 0.00 0.00 43.41 4.85
2130 3804 4.809426 GGCTATGTAACTCGTGCAGTAAAT 59.191 41.667 0.00 0.00 32.30 1.40
2256 3932 7.966246 TTCAATTTGAATGAAATCCAACCAG 57.034 32.000 7.74 0.00 32.76 4.00
2312 3988 2.042297 TGGCCACCACTGAAATCCATAA 59.958 45.455 0.00 0.00 0.00 1.90
2608 4293 8.298140 CACTCTTATATTAGTTTACGGAGGGAG 58.702 40.741 0.00 0.00 0.00 4.30
2609 4294 7.781693 ACACTCTTATATTAGTTTACGGAGGGA 59.218 37.037 0.00 0.00 0.00 4.20
2610 4295 7.949434 ACACTCTTATATTAGTTTACGGAGGG 58.051 38.462 0.00 0.00 0.00 4.30
2611 4296 9.813446 AAACACTCTTATATTAGTTTACGGAGG 57.187 33.333 0.00 0.00 0.00 4.30
2638 4323 9.680315 GCGTTTAGATCACTACATTAGTAATCT 57.320 33.333 4.72 4.72 44.17 2.40
2639 4324 9.680315 AGCGTTTAGATCACTACATTAGTAATC 57.320 33.333 0.00 0.00 37.23 1.75
2640 4325 9.680315 GAGCGTTTAGATCACTACATTAGTAAT 57.320 33.333 0.00 0.00 37.23 1.89
2641 4326 8.900781 AGAGCGTTTAGATCACTACATTAGTAA 58.099 33.333 0.00 0.00 37.82 2.24
2642 4327 8.447924 AGAGCGTTTAGATCACTACATTAGTA 57.552 34.615 0.00 0.00 37.82 1.82
2643 4328 7.336161 AGAGCGTTTAGATCACTACATTAGT 57.664 36.000 0.00 0.00 37.82 2.24
2644 4329 9.900710 ATAAGAGCGTTTAGATCACTACATTAG 57.099 33.333 0.00 0.00 37.82 1.73
2659 4344 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
2660 4345 8.910944 TCCTCTGTAAACTAATATAAGAGCGTT 58.089 33.333 0.00 0.00 0.00 4.84
2661 4346 8.461249 TCCTCTGTAAACTAATATAAGAGCGT 57.539 34.615 0.00 0.00 0.00 5.07
2662 4347 9.400638 CTTCCTCTGTAAACTAATATAAGAGCG 57.599 37.037 0.00 0.00 0.00 5.03
2680 4365 8.474025 AGTGAGAATTAACAGATACTTCCTCTG 58.526 37.037 0.00 0.00 44.60 3.35
2681 4366 8.602472 AGTGAGAATTAACAGATACTTCCTCT 57.398 34.615 0.00 0.00 0.00 3.69
2682 4367 8.691797 AGAGTGAGAATTAACAGATACTTCCTC 58.308 37.037 0.00 0.00 0.00 3.71
2683 4368 8.474025 CAGAGTGAGAATTAACAGATACTTCCT 58.526 37.037 0.00 0.00 0.00 3.36
2684 4369 7.223777 GCAGAGTGAGAATTAACAGATACTTCC 59.776 40.741 0.00 0.00 0.00 3.46
2685 4370 7.978975 AGCAGAGTGAGAATTAACAGATACTTC 59.021 37.037 0.00 0.00 0.00 3.01
2686 4371 7.846066 AGCAGAGTGAGAATTAACAGATACTT 58.154 34.615 0.00 0.00 0.00 2.24
2687 4372 7.416964 AGCAGAGTGAGAATTAACAGATACT 57.583 36.000 0.00 0.00 0.00 2.12
2688 4373 7.465245 GCAAGCAGAGTGAGAATTAACAGATAC 60.465 40.741 0.00 0.00 0.00 2.24
2689 4374 6.536582 GCAAGCAGAGTGAGAATTAACAGATA 59.463 38.462 0.00 0.00 0.00 1.98
2690 4375 5.353678 GCAAGCAGAGTGAGAATTAACAGAT 59.646 40.000 0.00 0.00 0.00 2.90
2817 4502 4.824537 TCAATAGCAACAAAGTGGCACTTA 59.175 37.500 31.34 15.55 37.47 2.24
2841 4526 3.695830 AGTTTCTTGCCGGTGAAGATA 57.304 42.857 16.07 10.41 29.60 1.98
3301 4991 6.709018 AGAAAAGGAGATCTCTAGTGTAGC 57.291 41.667 21.81 3.12 0.00 3.58
3338 5036 7.433680 ACTGTTAAATCAACAAGGAATTCCAC 58.566 34.615 26.22 11.15 46.37 4.02
3375 5073 6.805713 AGTTCCCAAGTTGAAACAAATACAG 58.194 36.000 17.79 0.00 0.00 2.74
3387 5085 1.750778 ACTGCACAAGTTCCCAAGTTG 59.249 47.619 0.00 0.00 45.25 3.16
3444 5143 6.072673 GGGGTAGTTTCAACACACTAAATCTG 60.073 42.308 0.00 0.00 0.00 2.90
3480 5186 1.065491 CAGTGGTAACTGCATGGGCTA 60.065 52.381 0.00 0.00 46.98 3.93
3698 5404 3.610911 GCTAACAGGGCAGATTACTTGT 58.389 45.455 0.00 0.00 0.00 3.16
3760 5466 5.788450 ACACAAATGAACCACACTCAAAAA 58.212 33.333 0.00 0.00 0.00 1.94
3761 5467 5.184864 AGACACAAATGAACCACACTCAAAA 59.815 36.000 0.00 0.00 0.00 2.44
3762 5468 4.704540 AGACACAAATGAACCACACTCAAA 59.295 37.500 0.00 0.00 0.00 2.69
3763 5469 4.096231 CAGACACAAATGAACCACACTCAA 59.904 41.667 0.00 0.00 0.00 3.02
3764 5470 3.627123 CAGACACAAATGAACCACACTCA 59.373 43.478 0.00 0.00 0.00 3.41
3864 5570 4.195225 ACTTTTGCCTCCGTTTCAAAAA 57.805 36.364 0.00 0.00 38.65 1.94
3865 5571 3.878160 ACTTTTGCCTCCGTTTCAAAA 57.122 38.095 0.00 0.00 37.36 2.44
3866 5572 3.878160 AACTTTTGCCTCCGTTTCAAA 57.122 38.095 0.00 0.00 0.00 2.69
3867 5573 3.878160 AAACTTTTGCCTCCGTTTCAA 57.122 38.095 0.00 0.00 0.00 2.69
3868 5574 3.516615 CAAAACTTTTGCCTCCGTTTCA 58.483 40.909 1.30 0.00 0.00 2.69
3869 5575 2.284150 GCAAAACTTTTGCCTCCGTTTC 59.716 45.455 23.40 0.00 39.38 2.78
3870 5576 2.276201 GCAAAACTTTTGCCTCCGTTT 58.724 42.857 23.40 0.00 39.38 3.60
3871 5577 1.934589 GCAAAACTTTTGCCTCCGTT 58.065 45.000 23.40 0.00 39.38 4.44
3872 5578 3.659850 GCAAAACTTTTGCCTCCGT 57.340 47.368 23.40 0.00 39.38 4.69
3878 5584 3.110447 TGGATGAGGCAAAACTTTTGC 57.890 42.857 25.11 25.11 44.22 3.68
3879 5585 7.910441 ATTAATGGATGAGGCAAAACTTTTG 57.090 32.000 9.54 9.54 0.00 2.44
3881 5587 9.657419 CTTAATTAATGGATGAGGCAAAACTTT 57.343 29.630 0.00 0.00 0.00 2.66
3882 5588 9.034800 TCTTAATTAATGGATGAGGCAAAACTT 57.965 29.630 0.00 0.00 0.00 2.66
3883 5589 8.593945 TCTTAATTAATGGATGAGGCAAAACT 57.406 30.769 0.00 0.00 0.00 2.66
3903 5609 8.836413 CCAAACACTGACAACTTTCTATCTTAA 58.164 33.333 0.00 0.00 0.00 1.85
3904 5610 7.990886 ACCAAACACTGACAACTTTCTATCTTA 59.009 33.333 0.00 0.00 0.00 2.10
3905 5611 6.828785 ACCAAACACTGACAACTTTCTATCTT 59.171 34.615 0.00 0.00 0.00 2.40
3906 5612 6.357367 ACCAAACACTGACAACTTTCTATCT 58.643 36.000 0.00 0.00 0.00 1.98
3907 5613 6.564125 CGACCAAACACTGACAACTTTCTATC 60.564 42.308 0.00 0.00 0.00 2.08
3908 5614 5.236478 CGACCAAACACTGACAACTTTCTAT 59.764 40.000 0.00 0.00 0.00 1.98
3909 5615 4.569162 CGACCAAACACTGACAACTTTCTA 59.431 41.667 0.00 0.00 0.00 2.10
3910 5616 3.374058 CGACCAAACACTGACAACTTTCT 59.626 43.478 0.00 0.00 0.00 2.52
3911 5617 3.372822 TCGACCAAACACTGACAACTTTC 59.627 43.478 0.00 0.00 0.00 2.62
3912 5618 3.340034 TCGACCAAACACTGACAACTTT 58.660 40.909 0.00 0.00 0.00 2.66
3931 5637 6.542370 ACCCATGAATTTAGGACTACAAATCG 59.458 38.462 0.00 0.00 0.00 3.34
4078 5879 0.589708 GTAAAGACACAACACGGCCC 59.410 55.000 0.00 0.00 0.00 5.80
4092 5893 6.149474 ACCTGCAAATGCTAACACTAGTAAAG 59.851 38.462 6.97 0.00 42.66 1.85
4163 5966 4.978083 AAAATCATCTGCCTGCTGTTAG 57.022 40.909 0.00 0.00 0.00 2.34
4164 5967 4.523943 ACAAAAATCATCTGCCTGCTGTTA 59.476 37.500 0.00 0.00 0.00 2.41
4196 5999 4.529377 AGCTTCCATTCACCATGACAAAAT 59.471 37.500 0.00 0.00 34.31 1.82
4197 6000 3.896888 AGCTTCCATTCACCATGACAAAA 59.103 39.130 0.00 0.00 34.31 2.44
4208 6011 0.400213 ACCACCGAAGCTTCCATTCA 59.600 50.000 20.62 0.00 0.00 2.57
4241 6044 5.790593 AGCAACTTTGTTCCGAGAGTAATA 58.209 37.500 0.00 0.00 0.00 0.98
4279 6116 1.338769 GGATGCCGTACAAGACCACTT 60.339 52.381 0.00 0.00 36.73 3.16
4323 6165 9.850628 ACAATCTTTTACATTTCATCATGTGAG 57.149 29.630 0.00 0.00 37.93 3.51
4401 6243 3.721706 GAGGAGGTGCCAGGGGTG 61.722 72.222 0.00 0.00 40.02 4.61
4407 6249 2.284921 CTCTGGGAGGAGGTGCCA 60.285 66.667 0.00 0.00 46.35 4.92
4408 6250 3.791586 GCTCTGGGAGGAGGTGCC 61.792 72.222 0.00 0.00 37.11 5.01
4409 6251 3.791586 GGCTCTGGGAGGAGGTGC 61.792 72.222 0.00 0.00 34.21 5.01
4410 6252 3.086600 GGGCTCTGGGAGGAGGTG 61.087 72.222 0.00 0.00 34.21 4.00
4411 6253 3.288381 AGGGCTCTGGGAGGAGGT 61.288 66.667 0.00 0.00 34.21 3.85
4412 6254 2.445654 GAGGGCTCTGGGAGGAGG 60.446 72.222 0.00 0.00 34.21 4.30
4413 6255 2.445654 GGAGGGCTCTGGGAGGAG 60.446 72.222 0.00 0.00 36.50 3.69
4414 6256 4.095400 GGGAGGGCTCTGGGAGGA 62.095 72.222 0.00 0.00 0.00 3.71
4418 6260 4.767892 AAGGGGGAGGGCTCTGGG 62.768 72.222 0.00 0.00 0.00 4.45
4419 6261 2.615288 AAAGGGGGAGGGCTCTGG 60.615 66.667 0.00 0.00 0.00 3.86
4420 6262 2.684499 GGAAAGGGGGAGGGCTCTG 61.684 68.421 0.00 0.00 0.00 3.35
4421 6263 2.286502 GGAAAGGGGGAGGGCTCT 60.287 66.667 0.00 0.00 0.00 4.09
4422 6264 2.286502 AGGAAAGGGGGAGGGCTC 60.287 66.667 0.00 0.00 0.00 4.70
4423 6265 2.286502 GAGGAAAGGGGGAGGGCT 60.287 66.667 0.00 0.00 0.00 5.19
4424 6266 3.421386 GGAGGAAAGGGGGAGGGC 61.421 72.222 0.00 0.00 0.00 5.19
4425 6267 1.230314 AAGGAGGAAAGGGGGAGGG 60.230 63.158 0.00 0.00 0.00 4.30
4426 6268 1.282653 GGAAGGAGGAAAGGGGGAGG 61.283 65.000 0.00 0.00 0.00 4.30
4427 6269 0.253394 AGGAAGGAGGAAAGGGGGAG 60.253 60.000 0.00 0.00 0.00 4.30
4428 6270 0.253207 GAGGAAGGAGGAAAGGGGGA 60.253 60.000 0.00 0.00 0.00 4.81
4429 6271 1.627297 CGAGGAAGGAGGAAAGGGGG 61.627 65.000 0.00 0.00 0.00 5.40
4430 6272 0.910088 ACGAGGAAGGAGGAAAGGGG 60.910 60.000 0.00 0.00 0.00 4.79
4431 6273 0.537653 GACGAGGAAGGAGGAAAGGG 59.462 60.000 0.00 0.00 0.00 3.95
4432 6274 0.173708 CGACGAGGAAGGAGGAAAGG 59.826 60.000 0.00 0.00 0.00 3.11
4433 6275 0.889306 ACGACGAGGAAGGAGGAAAG 59.111 55.000 0.00 0.00 0.00 2.62
4434 6276 0.886563 GACGACGAGGAAGGAGGAAA 59.113 55.000 0.00 0.00 0.00 3.13
4435 6277 1.303799 CGACGACGAGGAAGGAGGAA 61.304 60.000 0.00 0.00 42.66 3.36
4436 6278 1.744368 CGACGACGAGGAAGGAGGA 60.744 63.158 0.00 0.00 42.66 3.71
4437 6279 1.979831 GACGACGACGAGGAAGGAGG 61.980 65.000 15.32 0.00 42.66 4.30
4438 6280 1.424635 GACGACGACGAGGAAGGAG 59.575 63.158 15.32 0.00 42.66 3.69
4439 6281 2.385875 CGACGACGACGAGGAAGGA 61.386 63.158 15.32 0.00 42.66 3.36
4440 6282 2.097918 CGACGACGACGAGGAAGG 59.902 66.667 15.32 0.00 42.66 3.46
4441 6283 2.573689 GCGACGACGACGAGGAAG 60.574 66.667 22.94 1.53 42.66 3.46
4442 6284 3.046087 AGCGACGACGACGAGGAA 61.046 61.111 22.94 0.00 42.66 3.36
4443 6285 3.785499 CAGCGACGACGACGAGGA 61.785 66.667 22.94 0.00 42.66 3.71
4444 6286 4.813526 CCAGCGACGACGACGAGG 62.814 72.222 22.94 18.12 42.66 4.63
4490 6332 2.751837 GAAGGGAAAGGCCAGCGG 60.752 66.667 5.01 0.00 38.95 5.52
4491 6333 1.746991 GAGAAGGGAAAGGCCAGCG 60.747 63.158 5.01 0.00 38.95 5.18
4492 6334 1.379176 GGAGAAGGGAAAGGCCAGC 60.379 63.158 5.01 0.00 38.95 4.85
4493 6335 1.078143 CGGAGAAGGGAAAGGCCAG 60.078 63.158 5.01 0.00 38.95 4.85
4494 6336 2.602676 CCGGAGAAGGGAAAGGCCA 61.603 63.158 5.01 0.00 38.95 5.36
4495 6337 1.269703 TACCGGAGAAGGGAAAGGCC 61.270 60.000 9.46 0.00 35.02 5.19
4496 6338 0.178301 CTACCGGAGAAGGGAAAGGC 59.822 60.000 9.46 0.00 35.02 4.35
4497 6339 1.207329 CACTACCGGAGAAGGGAAAGG 59.793 57.143 9.46 0.00 35.02 3.11
4498 6340 1.405661 GCACTACCGGAGAAGGGAAAG 60.406 57.143 9.46 0.00 35.02 2.62
4499 6341 0.611714 GCACTACCGGAGAAGGGAAA 59.388 55.000 9.46 0.00 35.02 3.13
4500 6342 1.262640 GGCACTACCGGAGAAGGGAA 61.263 60.000 9.46 0.00 35.02 3.97
4501 6343 1.684734 GGCACTACCGGAGAAGGGA 60.685 63.158 9.46 0.00 35.02 4.20
4502 6344 2.901042 GGCACTACCGGAGAAGGG 59.099 66.667 9.46 4.56 35.02 3.95
4511 6353 4.814294 CCCTGCGTCGGCACTACC 62.814 72.222 0.00 0.00 46.21 3.18
4520 6362 4.074526 TCTGCTCTGCCCTGCGTC 62.075 66.667 0.00 0.00 0.00 5.19
4521 6363 4.079850 CTCTGCTCTGCCCTGCGT 62.080 66.667 0.00 0.00 0.00 5.24
4524 6366 4.834453 CGGCTCTGCTCTGCCCTG 62.834 72.222 8.40 0.00 45.90 4.45
4529 6371 4.463879 CCCCACGGCTCTGCTCTG 62.464 72.222 0.00 0.00 0.00 3.35
4531 6373 4.767255 CACCCCACGGCTCTGCTC 62.767 72.222 0.00 0.00 0.00 4.26
4537 6379 4.715130 TAGGAGCACCCCACGGCT 62.715 66.667 0.00 0.00 44.48 5.52
4538 6380 4.162690 CTAGGAGCACCCCACGGC 62.163 72.222 0.00 0.00 36.73 5.68
4539 6381 3.470888 CCTAGGAGCACCCCACGG 61.471 72.222 1.05 0.00 36.73 4.94
4540 6382 4.162690 GCCTAGGAGCACCCCACG 62.163 72.222 14.75 0.00 36.73 4.94
4541 6383 4.162690 CGCCTAGGAGCACCCCAC 62.163 72.222 14.75 0.00 36.73 4.61
4544 6386 4.162690 CACCGCCTAGGAGCACCC 62.163 72.222 14.75 0.00 45.00 4.61
4545 6387 3.372554 GACACCGCCTAGGAGCACC 62.373 68.421 14.75 0.00 45.00 5.01
4546 6388 2.184579 GACACCGCCTAGGAGCAC 59.815 66.667 14.75 0.00 45.00 4.40
4547 6389 3.449227 CGACACCGCCTAGGAGCA 61.449 66.667 14.75 0.00 45.00 4.26
4548 6390 4.208686 CCGACACCGCCTAGGAGC 62.209 72.222 14.75 0.00 45.00 4.70
4549 6391 2.754658 ACCGACACCGCCTAGGAG 60.755 66.667 14.75 9.83 45.00 3.69
4550 6392 2.753043 GACCGACACCGCCTAGGA 60.753 66.667 14.75 0.00 45.00 2.94
4552 6394 4.189188 CGGACCGACACCGCCTAG 62.189 72.222 8.64 0.00 43.74 3.02
4579 6421 3.948719 GACCGAGTGGCAACCCCA 61.949 66.667 0.00 0.00 42.79 4.96
4580 6422 2.240162 CTAGACCGAGTGGCAACCCC 62.240 65.000 0.00 0.00 39.70 4.95
4581 6423 1.218316 CTAGACCGAGTGGCAACCC 59.782 63.158 0.00 0.00 39.70 4.11
4582 6424 0.824759 ATCTAGACCGAGTGGCAACC 59.175 55.000 0.00 0.00 39.70 3.77
4583 6425 1.751924 AGATCTAGACCGAGTGGCAAC 59.248 52.381 0.00 0.00 39.70 4.17
4584 6426 2.145397 AGATCTAGACCGAGTGGCAA 57.855 50.000 0.00 0.00 39.70 4.52
4585 6427 1.751351 CAAGATCTAGACCGAGTGGCA 59.249 52.381 0.00 0.00 39.70 4.92
4586 6428 1.751924 ACAAGATCTAGACCGAGTGGC 59.248 52.381 0.00 0.00 39.70 5.01
4587 6429 2.359531 GGACAAGATCTAGACCGAGTGG 59.640 54.545 0.00 0.00 42.84 4.00
4588 6430 2.359531 GGGACAAGATCTAGACCGAGTG 59.640 54.545 0.00 0.00 0.00 3.51
4589 6431 2.242708 AGGGACAAGATCTAGACCGAGT 59.757 50.000 0.00 0.00 0.00 4.18
4590 6432 2.938838 AGGGACAAGATCTAGACCGAG 58.061 52.381 0.00 0.00 0.00 4.63
4591 6433 3.383698 AAGGGACAAGATCTAGACCGA 57.616 47.619 0.00 0.00 0.00 4.69
4592 6434 3.430929 CCAAAGGGACAAGATCTAGACCG 60.431 52.174 0.00 0.00 35.59 4.79
4593 6435 4.143986 CCAAAGGGACAAGATCTAGACC 57.856 50.000 0.00 0.00 35.59 3.85
4616 6458 4.035102 GTGTGGGAGGGAGCCACC 62.035 72.222 0.00 0.00 33.40 4.61
4617 6459 4.394712 CGTGTGGGAGGGAGCCAC 62.395 72.222 0.00 0.00 35.31 5.01
4618 6460 4.954118 ACGTGTGGGAGGGAGCCA 62.954 66.667 0.00 0.00 0.00 4.75
4619 6461 4.083862 GACGTGTGGGAGGGAGCC 62.084 72.222 0.00 0.00 0.00 4.70
4620 6462 4.436998 CGACGTGTGGGAGGGAGC 62.437 72.222 0.00 0.00 0.00 4.70
4621 6463 3.760035 CCGACGTGTGGGAGGGAG 61.760 72.222 0.00 0.00 0.00 4.30
4625 6467 4.003788 AAGGCCGACGTGTGGGAG 62.004 66.667 5.13 0.00 0.00 4.30
4626 6468 4.308458 CAAGGCCGACGTGTGGGA 62.308 66.667 5.13 0.00 0.00 4.37
4628 6470 4.308458 TCCAAGGCCGACGTGTGG 62.308 66.667 0.00 0.00 0.00 4.17
4629 6471 2.738521 CTCCAAGGCCGACGTGTG 60.739 66.667 0.00 0.00 0.00 3.82
4630 6472 4.003788 CCTCCAAGGCCGACGTGT 62.004 66.667 0.00 0.00 0.00 4.49
4631 6473 4.003788 ACCTCCAAGGCCGACGTG 62.004 66.667 0.00 0.00 39.63 4.49
4632 6474 4.003788 CACCTCCAAGGCCGACGT 62.004 66.667 0.00 0.00 39.63 4.34
4633 6475 4.760047 CCACCTCCAAGGCCGACG 62.760 72.222 0.00 0.00 39.63 5.12
4634 6476 3.192103 AACCACCTCCAAGGCCGAC 62.192 63.158 0.00 0.00 39.63 4.79
4635 6477 2.852075 AACCACCTCCAAGGCCGA 60.852 61.111 0.00 0.00 39.63 5.54
4636 6478 2.359975 GAACCACCTCCAAGGCCG 60.360 66.667 0.00 0.00 39.63 6.13
4637 6479 2.035783 GGAACCACCTCCAAGGCC 59.964 66.667 0.00 0.00 39.63 5.19
4650 6492 3.959991 GAGCAGCACGGGAGGGAAC 62.960 68.421 0.00 0.00 32.31 3.62
4651 6493 3.706373 GAGCAGCACGGGAGGGAA 61.706 66.667 0.00 0.00 32.31 3.97
4670 6512 1.518133 CGTCAGGAGTAGCAGCAGC 60.518 63.158 0.00 0.00 42.56 5.25
4671 6513 1.518133 GCGTCAGGAGTAGCAGCAG 60.518 63.158 0.00 0.00 0.00 4.24
4672 6514 2.573869 GCGTCAGGAGTAGCAGCA 59.426 61.111 0.00 0.00 0.00 4.41
4673 6515 2.202810 GGCGTCAGGAGTAGCAGC 60.203 66.667 0.00 0.00 0.00 5.25
4674 6516 1.140589 CAGGCGTCAGGAGTAGCAG 59.859 63.158 0.00 0.00 0.00 4.24
4675 6517 0.684479 ATCAGGCGTCAGGAGTAGCA 60.684 55.000 0.00 0.00 0.00 3.49
4676 6518 0.249238 CATCAGGCGTCAGGAGTAGC 60.249 60.000 0.00 0.00 0.00 3.58
4677 6519 0.249238 GCATCAGGCGTCAGGAGTAG 60.249 60.000 0.00 0.00 0.00 2.57
4678 6520 1.816537 GCATCAGGCGTCAGGAGTA 59.183 57.895 0.00 0.00 0.00 2.59
4679 6521 2.581354 GCATCAGGCGTCAGGAGT 59.419 61.111 0.00 0.00 0.00 3.85
4688 6530 4.434685 CGGAGAGAAGCATCAGGC 57.565 61.111 0.00 0.00 45.30 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.