Multiple sequence alignment - TraesCS5D01G115800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G115800 chr5D 100.000 4080 0 0 435 4514 135525178 135521099 0.000000e+00 7535
1 TraesCS5D01G115800 chr5D 100.000 148 0 0 1 148 135525612 135525465 1.600000e-69 274
2 TraesCS5D01G115800 chr5A 96.207 2452 75 7 1911 4348 169622473 169624920 0.000000e+00 3997
3 TraesCS5D01G115800 chr5A 91.641 658 32 5 1275 1910 169621772 169622428 0.000000e+00 889
4 TraesCS5D01G115800 chr5A 95.550 382 14 2 899 1277 169621356 169621737 3.860000e-170 608
5 TraesCS5D01G115800 chr5A 95.973 149 4 2 1 148 672810479 672810626 1.620000e-59 241
6 TraesCS5D01G115800 chr5A 89.062 128 14 0 4387 4514 169624924 169625051 4.670000e-35 159
7 TraesCS5D01G115800 chr5B 93.480 2638 106 22 1911 4514 147158926 147156321 0.000000e+00 3858
8 TraesCS5D01G115800 chr5B 95.904 293 9 1 991 1280 147162266 147161974 5.290000e-129 472
9 TraesCS5D01G115800 chr5B 89.437 142 9 3 864 1001 147163518 147163379 1.670000e-39 174
10 TraesCS5D01G115800 chr5B 91.870 123 6 1 1275 1397 147161942 147161824 7.770000e-38 169
11 TraesCS5D01G115800 chr5B 91.818 110 8 1 1802 1910 147159080 147158971 7.820000e-33 152
12 TraesCS5D01G115800 chr4D 89.549 421 33 11 435 853 389479701 389480112 1.440000e-144 523
13 TraesCS5D01G115800 chr4D 95.946 148 4 2 1 148 48053096 48052951 5.840000e-59 239
14 TraesCS5D01G115800 chr2D 90.256 390 26 8 467 853 36547511 36547891 2.420000e-137 499
15 TraesCS5D01G115800 chr2D 88.520 392 29 11 472 853 619442454 619442069 1.140000e-125 460
16 TraesCS5D01G115800 chr2D 95.946 148 4 1 1 148 497917666 497917811 5.840000e-59 239
17 TraesCS5D01G115800 chr3D 88.860 386 34 7 473 853 601085565 601085946 2.460000e-127 466
18 TraesCS5D01G115800 chr2A 85.995 407 41 9 435 837 603859815 603860209 5.400000e-114 422
19 TraesCS5D01G115800 chr2A 95.973 149 4 2 1 148 20960048 20959901 1.620000e-59 241
20 TraesCS5D01G115800 chr2A 95.918 147 5 1 1 147 706220625 706220770 2.100000e-58 237
21 TraesCS5D01G115800 chr7B 84.941 425 46 14 435 853 725523718 725523306 9.030000e-112 414
22 TraesCS5D01G115800 chr7A 87.126 334 36 6 521 853 442906999 442907326 5.510000e-99 372
23 TraesCS5D01G115800 chr7A 95.946 148 6 0 1 148 523142616 523142763 1.620000e-59 241
24 TraesCS5D01G115800 chr3A 83.333 420 44 19 435 848 690215039 690215438 9.230000e-97 364
25 TraesCS5D01G115800 chr3A 87.705 122 8 6 435 554 277538781 277538665 7.880000e-28 135
26 TraesCS5D01G115800 chr6A 83.377 385 49 9 470 853 196315219 196314849 4.320000e-90 342
27 TraesCS5D01G115800 chrUn 95.946 148 6 0 1 148 362187278 362187425 1.620000e-59 241
28 TraesCS5D01G115800 chrUn 95.946 148 6 0 1 148 462852651 462852504 1.620000e-59 241
29 TraesCS5D01G115800 chr1D 95.946 148 5 1 1 148 61976716 61976570 5.840000e-59 239


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G115800 chr5D 135521099 135525612 4513 True 3904.50 7535 100.0000 1 4514 2 chr5D.!!$R1 4513
1 TraesCS5D01G115800 chr5A 169621356 169625051 3695 False 1413.25 3997 93.1150 899 4514 4 chr5A.!!$F2 3615
2 TraesCS5D01G115800 chr5B 147156321 147163518 7197 True 965.00 3858 92.5018 864 4514 5 chr5B.!!$R1 3650

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
647 648 0.040425 CCGTGACTTTCGCAAAAGGG 60.040 55.0 1.57 0.0 45.15 3.95 F
810 811 0.243907 TCCGAAAGAAGCGTCCAGAG 59.756 55.0 0.00 0.0 0.00 3.35 F
1403 4067 0.320374 TGTTTAGCAGTCCCACTCCG 59.680 55.0 0.00 0.0 0.00 4.63 F
2473 6055 0.393808 ACGTATTCGGCTTGGGCATT 60.394 50.0 0.00 0.0 41.85 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1595 4261 1.448985 ACGATGGTTGAAATCCACCG 58.551 50.000 0.0 0.0 46.35 4.94 R
1971 5551 2.885135 ATGCTGTTGAGAACCATCCA 57.115 45.000 0.0 0.0 0.00 3.41 R
2977 6578 1.277739 CTGCACACACTGAACTGCG 59.722 57.895 0.0 0.0 31.96 5.18 R
4022 7637 1.268283 GGTTGGGGAGGAGAGAGGTG 61.268 65.000 0.0 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 3.414700 CACAACCGTGCCTCTCGC 61.415 66.667 0.00 0.00 36.06 5.03
68 69 2.018717 CGAAAGCAAAACCGTGACTC 57.981 50.000 0.00 0.00 0.00 3.36
69 70 1.597663 CGAAAGCAAAACCGTGACTCT 59.402 47.619 0.00 0.00 0.00 3.24
70 71 2.348591 CGAAAGCAAAACCGTGACTCTC 60.349 50.000 0.00 0.00 0.00 3.20
71 72 1.217882 AAGCAAAACCGTGACTCTCG 58.782 50.000 0.00 0.00 0.00 4.04
72 73 1.204312 GCAAAACCGTGACTCTCGC 59.796 57.895 0.00 0.00 0.00 5.03
82 83 3.854286 GTGACTCTCGCGAAAGAAAAA 57.146 42.857 17.91 0.00 0.00 1.94
123 124 3.434940 TTTTCCCTTTCCTAGAGGCAC 57.565 47.619 0.00 0.00 32.74 5.01
124 125 0.902531 TTCCCTTTCCTAGAGGCACG 59.097 55.000 0.00 0.00 32.74 5.34
125 126 0.976073 TCCCTTTCCTAGAGGCACGG 60.976 60.000 0.00 0.00 32.74 4.94
126 127 1.153349 CCTTTCCTAGAGGCACGGC 60.153 63.158 0.00 0.00 34.44 5.68
475 476 8.936509 AAAAATAGAAAACGCGTTTTGTTTTT 57.063 23.077 44.12 38.79 46.40 1.94
476 477 8.576829 AAAATAGAAAACGCGTTTTGTTTTTC 57.423 26.923 44.12 31.24 46.40 2.29
477 478 4.571375 AGAAAACGCGTTTTGTTTTTCC 57.429 36.364 44.12 30.00 46.40 3.13
478 479 3.368539 AGAAAACGCGTTTTGTTTTTCCC 59.631 39.130 44.12 29.39 46.40 3.97
479 480 2.658373 AACGCGTTTTGTTTTTCCCT 57.342 40.000 20.79 0.00 0.00 4.20
480 481 2.658373 ACGCGTTTTGTTTTTCCCTT 57.342 40.000 5.58 0.00 0.00 3.95
481 482 2.962125 ACGCGTTTTGTTTTTCCCTTT 58.038 38.095 5.58 0.00 0.00 3.11
482 483 3.327626 ACGCGTTTTGTTTTTCCCTTTT 58.672 36.364 5.58 0.00 0.00 2.27
483 484 3.368539 ACGCGTTTTGTTTTTCCCTTTTC 59.631 39.130 5.58 0.00 0.00 2.29
484 485 3.540551 CGCGTTTTGTTTTTCCCTTTTCG 60.541 43.478 0.00 0.00 0.00 3.46
485 486 3.613299 GCGTTTTGTTTTTCCCTTTTCGA 59.387 39.130 0.00 0.00 0.00 3.71
486 487 4.259650 GCGTTTTGTTTTTCCCTTTTCGAG 60.260 41.667 0.00 0.00 0.00 4.04
487 488 5.096849 CGTTTTGTTTTTCCCTTTTCGAGA 58.903 37.500 0.00 0.00 0.00 4.04
488 489 5.229260 CGTTTTGTTTTTCCCTTTTCGAGAG 59.771 40.000 0.00 0.00 0.00 3.20
489 490 4.911514 TTGTTTTTCCCTTTTCGAGAGG 57.088 40.909 9.36 9.36 0.00 3.69
490 491 2.621526 TGTTTTTCCCTTTTCGAGAGGC 59.378 45.455 10.56 0.00 32.74 4.70
491 492 2.621526 GTTTTTCCCTTTTCGAGAGGCA 59.378 45.455 10.56 0.00 32.74 4.75
492 493 1.892209 TTTCCCTTTTCGAGAGGCAC 58.108 50.000 10.56 0.00 32.74 5.01
493 494 0.320421 TTCCCTTTTCGAGAGGCACG 60.320 55.000 10.56 0.00 32.74 5.34
494 495 1.004918 CCCTTTTCGAGAGGCACGT 60.005 57.895 10.56 0.00 32.74 4.49
495 496 1.014564 CCCTTTTCGAGAGGCACGTC 61.015 60.000 10.56 0.00 32.74 4.34
496 497 1.014564 CCTTTTCGAGAGGCACGTCC 61.015 60.000 4.24 0.00 0.00 4.79
497 498 1.344942 CTTTTCGAGAGGCACGTCCG 61.345 60.000 0.00 0.00 40.77 4.79
498 499 2.079020 TTTTCGAGAGGCACGTCCGT 62.079 55.000 0.00 0.00 40.77 4.69
530 531 3.248029 CACAACTGTGCCTCTCGC 58.752 61.111 0.00 0.00 39.39 5.03
531 532 2.356313 ACAACTGTGCCTCTCGCG 60.356 61.111 0.00 0.00 42.08 5.87
532 533 3.114616 CAACTGTGCCTCTCGCGG 61.115 66.667 6.13 0.00 42.08 6.46
533 534 3.303135 AACTGTGCCTCTCGCGGA 61.303 61.111 6.13 1.01 42.08 5.54
534 535 2.867855 AACTGTGCCTCTCGCGGAA 61.868 57.895 6.13 0.00 42.08 4.30
535 536 2.507992 CTGTGCCTCTCGCGGAAG 60.508 66.667 6.13 3.71 42.08 3.46
547 548 4.914291 CGGAAGCAAAACCGTGAC 57.086 55.556 0.00 0.00 43.53 3.67
548 549 2.317230 CGGAAGCAAAACCGTGACT 58.683 52.632 0.00 0.00 43.53 3.41
549 550 0.234884 CGGAAGCAAAACCGTGACTC 59.765 55.000 0.00 0.00 43.53 3.36
550 551 1.594331 GGAAGCAAAACCGTGACTCT 58.406 50.000 0.00 0.00 0.00 3.24
551 552 1.531578 GGAAGCAAAACCGTGACTCTC 59.468 52.381 0.00 0.00 0.00 3.20
552 553 1.192534 GAAGCAAAACCGTGACTCTCG 59.807 52.381 0.00 0.00 0.00 4.04
553 554 1.204312 GCAAAACCGTGACTCTCGC 59.796 57.895 0.00 0.00 0.00 5.03
563 564 3.854286 GTGACTCTCGCGAAAGAAAAA 57.146 42.857 17.91 0.00 0.00 1.94
615 616 2.887568 GCACGGCCATGACTCTCG 60.888 66.667 1.12 0.00 0.00 4.04
616 617 2.887568 CACGGCCATGACTCTCGC 60.888 66.667 2.24 0.00 0.00 5.03
617 618 4.498520 ACGGCCATGACTCTCGCG 62.499 66.667 2.24 0.00 0.00 5.87
619 620 3.838271 GGCCATGACTCTCGCGGA 61.838 66.667 6.13 1.01 0.00 5.54
620 621 2.184322 GCCATGACTCTCGCGGAA 59.816 61.111 6.13 0.00 0.00 4.30
621 622 1.447838 GCCATGACTCTCGCGGAAA 60.448 57.895 6.13 0.00 0.00 3.13
622 623 1.019278 GCCATGACTCTCGCGGAAAA 61.019 55.000 6.13 0.00 0.00 2.29
623 624 1.438651 CCATGACTCTCGCGGAAAAA 58.561 50.000 6.13 0.00 0.00 1.94
642 643 2.923605 AAAAACCGTGACTTTCGCAA 57.076 40.000 0.00 0.00 0.00 4.85
643 644 2.923605 AAAACCGTGACTTTCGCAAA 57.076 40.000 0.00 0.00 0.00 3.68
644 645 2.923605 AAACCGTGACTTTCGCAAAA 57.076 40.000 0.00 0.00 0.00 2.44
645 646 2.468532 AACCGTGACTTTCGCAAAAG 57.531 45.000 0.00 0.00 46.11 2.27
646 647 0.661020 ACCGTGACTTTCGCAAAAGG 59.339 50.000 1.57 0.00 45.15 3.11
647 648 0.040425 CCGTGACTTTCGCAAAAGGG 60.040 55.000 1.57 0.00 45.15 3.95
648 649 0.040425 CGTGACTTTCGCAAAAGGGG 60.040 55.000 1.57 0.00 45.15 4.79
649 650 1.314730 GTGACTTTCGCAAAAGGGGA 58.685 50.000 1.57 0.00 45.15 4.81
650 651 1.679153 GTGACTTTCGCAAAAGGGGAA 59.321 47.619 1.57 0.00 45.15 3.97
706 707 6.687081 TTTTGGTCGAAAAGCTAAGAAAGA 57.313 33.333 0.00 0.00 0.00 2.52
707 708 5.668558 TTGGTCGAAAAGCTAAGAAAGAC 57.331 39.130 0.00 0.00 0.00 3.01
708 709 4.062991 TGGTCGAAAAGCTAAGAAAGACC 58.937 43.478 14.98 14.98 45.03 3.85
709 710 3.123116 GGTCGAAAAGCTAAGAAAGACCG 59.877 47.826 9.27 0.00 37.71 4.79
710 711 3.123116 GTCGAAAAGCTAAGAAAGACCGG 59.877 47.826 0.00 0.00 0.00 5.28
711 712 2.415512 CGAAAAGCTAAGAAAGACCGGG 59.584 50.000 6.32 0.00 0.00 5.73
712 713 2.491675 AAAGCTAAGAAAGACCGGGG 57.508 50.000 6.32 0.00 0.00 5.73
713 714 1.652947 AAGCTAAGAAAGACCGGGGA 58.347 50.000 6.32 0.00 0.00 4.81
714 715 1.652947 AGCTAAGAAAGACCGGGGAA 58.347 50.000 6.32 0.00 0.00 3.97
715 716 1.982958 AGCTAAGAAAGACCGGGGAAA 59.017 47.619 6.32 0.00 0.00 3.13
716 717 2.374170 AGCTAAGAAAGACCGGGGAAAA 59.626 45.455 6.32 0.00 0.00 2.29
717 718 3.151554 GCTAAGAAAGACCGGGGAAAAA 58.848 45.455 6.32 0.00 0.00 1.94
718 719 3.057736 GCTAAGAAAGACCGGGGAAAAAC 60.058 47.826 6.32 0.00 0.00 2.43
719 720 1.991121 AGAAAGACCGGGGAAAAACC 58.009 50.000 6.32 0.00 38.08 3.27
720 721 1.215924 AGAAAGACCGGGGAAAAACCA 59.784 47.619 6.32 0.00 41.20 3.67
721 722 2.033372 GAAAGACCGGGGAAAAACCAA 58.967 47.619 6.32 0.00 41.20 3.67
722 723 2.162264 AAGACCGGGGAAAAACCAAA 57.838 45.000 6.32 0.00 41.20 3.28
723 724 2.162264 AGACCGGGGAAAAACCAAAA 57.838 45.000 6.32 0.00 41.20 2.44
724 725 1.758280 AGACCGGGGAAAAACCAAAAC 59.242 47.619 6.32 0.00 41.20 2.43
725 726 0.460722 ACCGGGGAAAAACCAAAACG 59.539 50.000 6.32 0.00 41.20 3.60
726 727 0.460722 CCGGGGAAAAACCAAAACGT 59.539 50.000 0.00 0.00 41.20 3.99
727 728 1.536496 CCGGGGAAAAACCAAAACGTC 60.536 52.381 0.00 0.00 41.20 4.34
728 729 1.842720 GGGGAAAAACCAAAACGTCG 58.157 50.000 0.00 0.00 41.20 5.12
729 730 1.404748 GGGGAAAAACCAAAACGTCGA 59.595 47.619 0.00 0.00 41.20 4.20
730 731 2.159268 GGGGAAAAACCAAAACGTCGAA 60.159 45.455 0.00 0.00 41.20 3.71
731 732 3.509740 GGGAAAAACCAAAACGTCGAAA 58.490 40.909 0.00 0.00 41.20 3.46
732 733 3.925299 GGGAAAAACCAAAACGTCGAAAA 59.075 39.130 0.00 0.00 41.20 2.29
733 734 4.388165 GGGAAAAACCAAAACGTCGAAAAA 59.612 37.500 0.00 0.00 41.20 1.94
750 751 3.331478 AAAAACCCGGGAAAAACGTTT 57.669 38.095 32.02 12.82 0.00 3.60
751 752 4.462508 AAAAACCCGGGAAAAACGTTTA 57.537 36.364 32.02 0.00 0.00 2.01
752 753 4.462508 AAAACCCGGGAAAAACGTTTAA 57.537 36.364 32.02 0.00 0.00 1.52
753 754 4.462508 AAACCCGGGAAAAACGTTTAAA 57.537 36.364 32.02 0.00 0.00 1.52
754 755 4.462508 AACCCGGGAAAAACGTTTAAAA 57.537 36.364 32.02 0.00 0.00 1.52
755 756 4.462508 ACCCGGGAAAAACGTTTAAAAA 57.537 36.364 32.02 0.00 0.00 1.94
756 757 4.431809 ACCCGGGAAAAACGTTTAAAAAG 58.568 39.130 32.02 6.38 0.00 2.27
757 758 3.245754 CCCGGGAAAAACGTTTAAAAAGC 59.754 43.478 18.48 0.55 0.00 3.51
758 759 3.245754 CCGGGAAAAACGTTTAAAAAGCC 59.754 43.478 15.03 9.15 0.00 4.35
759 760 3.061073 CGGGAAAAACGTTTAAAAAGCCG 60.061 43.478 15.03 0.00 0.00 5.52
760 761 4.111198 GGGAAAAACGTTTAAAAAGCCGA 58.889 39.130 15.03 0.00 0.00 5.54
761 762 4.565962 GGGAAAAACGTTTAAAAAGCCGAA 59.434 37.500 15.03 0.00 0.00 4.30
762 763 5.063186 GGGAAAAACGTTTAAAAAGCCGAAA 59.937 36.000 15.03 0.00 0.00 3.46
763 764 6.401903 GGGAAAAACGTTTAAAAAGCCGAAAA 60.402 34.615 15.03 0.00 0.00 2.29
764 765 6.462323 GGAAAAACGTTTAAAAAGCCGAAAAC 59.538 34.615 15.03 0.00 0.00 2.43
766 767 3.130797 CGTTTAAAAAGCCGAAAACGC 57.869 42.857 6.30 0.00 44.94 4.84
767 768 2.406245 CGTTTAAAAAGCCGAAAACGCG 60.406 45.455 3.53 3.53 44.94 6.01
768 769 2.471862 TTAAAAAGCCGAAAACGCGT 57.528 40.000 5.58 5.58 0.00 6.01
769 770 1.744374 TAAAAAGCCGAAAACGCGTG 58.256 45.000 14.98 0.00 0.00 5.34
770 771 1.476235 AAAAAGCCGAAAACGCGTGC 61.476 50.000 14.98 12.13 0.00 5.34
771 772 4.659874 AAGCCGAAAACGCGTGCG 62.660 61.111 14.98 17.33 46.03 5.34
773 774 4.653252 GCCGAAAACGCGTGCGAA 62.653 61.111 24.61 0.00 42.83 4.70
774 775 2.052941 CCGAAAACGCGTGCGAAA 60.053 55.556 24.61 0.00 42.83 3.46
775 776 1.651730 CCGAAAACGCGTGCGAAAA 60.652 52.632 24.61 0.00 42.83 2.29
776 777 1.194896 CCGAAAACGCGTGCGAAAAA 61.195 50.000 24.61 0.00 42.83 1.94
805 806 7.562640 AAAAATAAAATCCGAAAGAAGCGTC 57.437 32.000 0.00 0.00 0.00 5.19
806 807 4.877323 ATAAAATCCGAAAGAAGCGTCC 57.123 40.909 0.00 0.00 0.00 4.79
807 808 2.178912 AAATCCGAAAGAAGCGTCCA 57.821 45.000 0.00 0.00 0.00 4.02
808 809 1.726853 AATCCGAAAGAAGCGTCCAG 58.273 50.000 0.00 0.00 0.00 3.86
809 810 0.895530 ATCCGAAAGAAGCGTCCAGA 59.104 50.000 0.00 0.00 0.00 3.86
810 811 0.243907 TCCGAAAGAAGCGTCCAGAG 59.756 55.000 0.00 0.00 0.00 3.35
811 812 1.355066 CCGAAAGAAGCGTCCAGAGC 61.355 60.000 0.00 0.00 0.00 4.09
812 813 1.678269 CGAAAGAAGCGTCCAGAGCG 61.678 60.000 0.00 0.00 40.04 5.03
820 821 4.702081 GTCCAGAGCGCGACACGT 62.702 66.667 12.10 0.00 46.11 4.49
821 822 4.700365 TCCAGAGCGCGACACGTG 62.700 66.667 15.48 15.48 46.11 4.49
831 832 2.742372 GACACGTGGCGAATGGCT 60.742 61.111 21.57 0.00 42.94 4.75
832 833 3.027170 GACACGTGGCGAATGGCTG 62.027 63.158 21.57 0.00 42.94 4.85
833 834 2.741985 CACGTGGCGAATGGCTGA 60.742 61.111 7.95 0.00 42.94 4.26
834 835 2.434884 ACGTGGCGAATGGCTGAG 60.435 61.111 0.00 0.00 42.94 3.35
835 836 2.125552 CGTGGCGAATGGCTGAGA 60.126 61.111 0.00 0.00 42.94 3.27
836 837 2.169789 CGTGGCGAATGGCTGAGAG 61.170 63.158 0.00 0.00 42.94 3.20
837 838 2.124983 TGGCGAATGGCTGAGAGC 60.125 61.111 0.00 0.00 42.94 4.09
838 839 3.267860 GGCGAATGGCTGAGAGCG 61.268 66.667 0.00 0.00 43.62 5.03
839 840 2.510238 GCGAATGGCTGAGAGCGT 60.510 61.111 0.00 0.00 43.62 5.07
840 841 2.806856 GCGAATGGCTGAGAGCGTG 61.807 63.158 0.00 0.00 43.62 5.34
841 842 2.806856 CGAATGGCTGAGAGCGTGC 61.807 63.158 0.00 0.00 43.62 5.34
842 843 2.806856 GAATGGCTGAGAGCGTGCG 61.807 63.158 0.00 0.00 43.62 5.34
843 844 3.300934 AATGGCTGAGAGCGTGCGA 62.301 57.895 0.00 0.00 43.62 5.10
844 845 2.786539 AATGGCTGAGAGCGTGCGAA 62.787 55.000 0.00 0.00 43.62 4.70
845 846 3.184683 GGCTGAGAGCGTGCGAAG 61.185 66.667 0.00 0.00 43.62 3.79
846 847 2.431601 GCTGAGAGCGTGCGAAGT 60.432 61.111 0.00 0.00 0.00 3.01
847 848 2.724708 GCTGAGAGCGTGCGAAGTG 61.725 63.158 0.00 0.00 0.00 3.16
848 849 2.049156 TGAGAGCGTGCGAAGTGG 60.049 61.111 0.00 0.00 0.00 4.00
849 850 3.482783 GAGAGCGTGCGAAGTGGC 61.483 66.667 0.00 0.00 0.00 5.01
858 859 2.568612 CGAAGTGGCGCTCTCAGA 59.431 61.111 7.64 0.00 0.00 3.27
859 860 1.080501 CGAAGTGGCGCTCTCAGAA 60.081 57.895 7.64 0.00 0.00 3.02
860 861 0.667487 CGAAGTGGCGCTCTCAGAAA 60.667 55.000 7.64 0.00 0.00 2.52
861 862 1.074752 GAAGTGGCGCTCTCAGAAAG 58.925 55.000 7.64 0.00 0.00 2.62
862 863 0.952984 AAGTGGCGCTCTCAGAAAGC 60.953 55.000 7.64 0.00 36.38 3.51
863 864 1.669115 GTGGCGCTCTCAGAAAGCA 60.669 57.895 7.64 0.00 39.81 3.91
864 865 1.375140 TGGCGCTCTCAGAAAGCAG 60.375 57.895 7.64 0.00 39.81 4.24
865 866 2.105466 GGCGCTCTCAGAAAGCAGG 61.105 63.158 7.64 0.00 39.81 4.85
866 867 1.079543 GCGCTCTCAGAAAGCAGGA 60.080 57.895 0.00 0.00 39.81 3.86
867 868 0.671781 GCGCTCTCAGAAAGCAGGAA 60.672 55.000 0.00 0.00 39.81 3.36
868 869 1.074752 CGCTCTCAGAAAGCAGGAAC 58.925 55.000 0.00 0.00 39.81 3.62
869 870 1.606480 CGCTCTCAGAAAGCAGGAACA 60.606 52.381 0.00 0.00 39.81 3.18
870 871 2.498167 GCTCTCAGAAAGCAGGAACAA 58.502 47.619 0.00 0.00 39.61 2.83
871 872 2.225255 GCTCTCAGAAAGCAGGAACAAC 59.775 50.000 0.00 0.00 39.61 3.32
872 873 2.478134 CTCTCAGAAAGCAGGAACAACG 59.522 50.000 0.00 0.00 0.00 4.10
873 874 2.158957 TCTCAGAAAGCAGGAACAACGT 60.159 45.455 0.00 0.00 0.00 3.99
874 875 2.210116 TCAGAAAGCAGGAACAACGTC 58.790 47.619 0.00 0.00 0.00 4.34
875 876 1.939934 CAGAAAGCAGGAACAACGTCA 59.060 47.619 0.00 0.00 0.00 4.35
876 877 2.354510 CAGAAAGCAGGAACAACGTCAA 59.645 45.455 0.00 0.00 0.00 3.18
877 878 2.354821 AGAAAGCAGGAACAACGTCAAC 59.645 45.455 0.00 0.00 0.00 3.18
878 879 0.655733 AAGCAGGAACAACGTCAACG 59.344 50.000 0.12 0.12 46.33 4.10
879 880 1.157870 AGCAGGAACAACGTCAACGG 61.158 55.000 7.53 0.00 44.95 4.44
880 881 1.433837 GCAGGAACAACGTCAACGGT 61.434 55.000 7.53 0.00 44.95 4.83
881 882 1.855513 CAGGAACAACGTCAACGGTA 58.144 50.000 7.53 0.00 44.95 4.02
885 886 0.932399 AACAACGTCAACGGTAGTGC 59.068 50.000 7.53 0.00 44.95 4.40
912 917 2.432444 TGTGAGAAAAATGCTACCGGG 58.568 47.619 6.32 0.00 0.00 5.73
1177 2308 2.476534 CTTGCGGCGATTTGGTGCTT 62.477 55.000 12.98 0.00 0.00 3.91
1181 2312 1.153958 GGCGATTTGGTGCTTGCTC 60.154 57.895 0.00 0.00 0.00 4.26
1272 2403 4.171103 GTCGGATGGGGGTTCGGG 62.171 72.222 0.00 0.00 0.00 5.14
1403 4067 0.320374 TGTTTAGCAGTCCCACTCCG 59.680 55.000 0.00 0.00 0.00 4.63
1475 4139 2.286365 TGGTTACCAAAAGCCTCCAG 57.714 50.000 0.00 0.00 0.00 3.86
1526 4192 5.767816 AAGAAATAACGGAACAGCTTTGT 57.232 34.783 0.00 0.00 0.00 2.83
1538 4204 5.334879 GGAACAGCTTTGTGTACGATGAAAT 60.335 40.000 0.00 0.00 0.00 2.17
1544 4210 5.334879 GCTTTGTGTACGATGAAATTGGTCT 60.335 40.000 0.00 0.00 29.54 3.85
1546 4212 7.572353 GCTTTGTGTACGATGAAATTGGTCTAA 60.572 37.037 0.00 0.00 29.54 2.10
1566 4232 3.861276 ACTTGTTACGACGATGGATCA 57.139 42.857 0.00 0.00 0.00 2.92
1595 4261 3.374058 CCCACAGACGTGATAAAATGGAC 59.626 47.826 0.00 0.00 46.80 4.02
1666 4340 2.159338 ACAGAAATGCTTATGCCGCAAG 60.159 45.455 0.00 0.00 41.26 4.01
1676 4350 4.855388 GCTTATGCCGCAAGATTCAATATG 59.145 41.667 0.00 0.00 43.02 1.78
1764 4438 8.995027 AAGTTGGTCCAATATTATATGAAGCA 57.005 30.769 7.77 0.00 0.00 3.91
1809 5344 8.916062 TGGAAATGCTTATGTCATAACATTCAT 58.084 29.630 21.07 13.50 43.74 2.57
2261 5843 5.279206 CCATAGCCAATACAGGTAGACAGAG 60.279 48.000 0.00 0.00 0.00 3.35
2288 5870 1.765314 CAGGCACCCAGCTAATAGAGT 59.235 52.381 0.00 0.00 44.79 3.24
2289 5871 2.171448 CAGGCACCCAGCTAATAGAGTT 59.829 50.000 0.00 0.00 44.79 3.01
2364 5946 9.838339 CTTTGAAGAGTTATGGTCCTATTGTAT 57.162 33.333 0.00 0.00 0.00 2.29
2473 6055 0.393808 ACGTATTCGGCTTGGGCATT 60.394 50.000 0.00 0.00 41.85 3.56
2841 6442 5.107109 TGATGAACTTGGACGTTTTCATG 57.893 39.130 12.23 6.83 38.51 3.07
2938 6539 5.949354 CCATTAACATTCTCTTGGTTGGGTA 59.051 40.000 0.00 0.00 0.00 3.69
2993 6598 2.633657 CCGCAGTTCAGTGTGTGC 59.366 61.111 4.62 4.62 0.00 4.57
3021 6626 8.454106 GTGCATTATGTCTGGATATGGTTAATC 58.546 37.037 0.00 0.00 0.00 1.75
3030 6644 9.778741 GTCTGGATATGGTTAATCACAATCTAA 57.221 33.333 10.98 2.70 0.00 2.10
3265 6879 7.692460 TCAGTGAAAATGAGAATGCAATAGT 57.308 32.000 0.00 0.00 35.16 2.12
3327 6941 1.544724 GGTGCCTACATGCTGGAAAA 58.455 50.000 8.57 0.00 0.00 2.29
3419 7033 4.687901 TCAGTGATTCTTCCAGTGTGAA 57.312 40.909 0.00 0.00 36.58 3.18
3475 7089 2.742372 GCTGTGCCGTCGGTTGAT 60.742 61.111 13.94 0.00 0.00 2.57
3478 7092 1.900585 CTGTGCCGTCGGTTGATGTG 61.901 60.000 13.94 0.00 0.00 3.21
3727 7342 5.647658 CACAATCCAGGCAGTTACTTTATGA 59.352 40.000 0.00 0.00 0.00 2.15
3854 7469 7.178983 TGGAATCTACCAAATTGAAAGCTTCAT 59.821 33.333 0.00 0.00 36.93 2.57
3905 7520 2.606378 ACTTACCGGAGAAGACCAGTT 58.394 47.619 22.28 1.94 0.00 3.16
3964 7579 0.659957 GGAGGCGCTAAAATCTGCTG 59.340 55.000 7.64 0.00 0.00 4.41
3987 7602 3.954258 CTGTTTGTTCTTTCCTCCTTGGT 59.046 43.478 0.00 0.00 37.07 3.67
3996 7611 0.397941 TCCTCCTTGGTGTCAAGCAG 59.602 55.000 0.96 0.00 46.69 4.24
4022 7637 1.527433 GCAGTTCCCTCTTGGTTGGC 61.527 60.000 0.00 0.00 34.77 4.52
4295 7910 3.704566 CCAAGTACTGTCCTATGGCAGTA 59.295 47.826 8.23 8.23 43.30 2.74
4373 7988 5.407387 TGTTAGCAACGAAGGAATACAGTTC 59.593 40.000 0.00 0.00 0.00 3.01
4376 7991 3.994392 GCAACGAAGGAATACAGTTCTCA 59.006 43.478 0.00 0.00 0.00 3.27
4377 7992 4.143094 GCAACGAAGGAATACAGTTCTCAC 60.143 45.833 0.00 0.00 0.00 3.51
4378 7993 4.866508 ACGAAGGAATACAGTTCTCACA 57.133 40.909 0.00 0.00 0.00 3.58
4393 8008 4.815533 TCTCACATGAAGAAAGGGAGAG 57.184 45.455 0.00 0.00 0.00 3.20
4399 8014 5.365025 CACATGAAGAAAGGGAGAGGAGATA 59.635 44.000 0.00 0.00 0.00 1.98
4435 8050 6.801575 TGAAGAAAAGCAGTTACGGAATTTT 58.198 32.000 0.00 0.00 0.00 1.82
4438 8053 4.823790 AAAGCAGTTACGGAATTTTCGT 57.176 36.364 8.01 8.01 43.64 3.85
4439 8054 4.823790 AAGCAGTTACGGAATTTTCGTT 57.176 36.364 8.24 0.00 41.38 3.85
4442 8057 4.151867 AGCAGTTACGGAATTTTCGTTCTC 59.848 41.667 8.24 0.13 41.38 2.87
4483 8098 1.336240 GCAAAGGATGTTGTCTGCCAC 60.336 52.381 0.00 0.00 0.00 5.01
4484 8099 1.955778 CAAAGGATGTTGTCTGCCACA 59.044 47.619 0.00 0.00 0.00 4.17
4493 8108 6.072175 GGATGTTGTCTGCCACAAACTTATTA 60.072 38.462 0.09 0.00 46.90 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 3.909258 TTTCGCGAGAGTCACGGCC 62.909 63.158 9.59 0.00 43.69 6.13
13 14 2.430244 TTTCGCGAGAGTCACGGC 60.430 61.111 9.59 3.61 43.69 5.68
14 15 2.437343 GCTTTCGCGAGAGTCACGG 61.437 63.158 25.34 2.90 43.69 4.94
15 16 1.729484 TGCTTTCGCGAGAGTCACG 60.729 57.895 25.34 5.53 43.69 4.35
16 17 0.939577 TGTGCTTTCGCGAGAGTCAC 60.940 55.000 29.56 29.56 43.69 3.67
17 18 0.249280 TTGTGCTTTCGCGAGAGTCA 60.249 50.000 25.34 20.22 43.69 3.41
18 19 0.161870 GTTGTGCTTTCGCGAGAGTC 59.838 55.000 25.34 18.16 43.69 3.36
19 20 1.222115 GGTTGTGCTTTCGCGAGAGT 61.222 55.000 25.34 0.00 43.69 3.24
20 21 1.493311 GGTTGTGCTTTCGCGAGAG 59.507 57.895 21.42 21.42 43.69 3.20
21 22 2.307309 CGGTTGTGCTTTCGCGAGA 61.307 57.895 9.59 3.35 39.65 4.04
22 23 2.170985 CGGTTGTGCTTTCGCGAG 59.829 61.111 9.59 0.00 39.65 5.03
23 24 2.586635 ACGGTTGTGCTTTCGCGA 60.587 55.556 3.71 3.71 39.65 5.87
24 25 2.425124 CACGGTTGTGCTTTCGCG 60.425 61.111 0.00 0.00 39.67 5.87
34 35 4.717629 TCGCGAGAGGCACGGTTG 62.718 66.667 3.71 0.00 43.84 3.77
35 36 3.509137 TTTCGCGAGAGGCACGGTT 62.509 57.895 9.59 0.00 43.84 4.44
36 37 3.916392 CTTTCGCGAGAGGCACGGT 62.916 63.158 18.35 0.00 43.84 4.83
37 38 3.181967 CTTTCGCGAGAGGCACGG 61.182 66.667 18.35 0.00 43.84 4.94
38 39 3.843240 GCTTTCGCGAGAGGCACG 61.843 66.667 25.84 3.72 43.84 5.34
39 40 1.841663 TTTGCTTTCGCGAGAGGCAC 61.842 55.000 25.84 11.56 45.26 5.01
40 41 1.163420 TTTTGCTTTCGCGAGAGGCA 61.163 50.000 25.84 23.78 44.45 4.75
41 42 0.726118 GTTTTGCTTTCGCGAGAGGC 60.726 55.000 25.84 21.76 43.69 4.70
42 43 0.110192 GGTTTTGCTTTCGCGAGAGG 60.110 55.000 25.84 13.55 43.69 3.69
43 44 0.451135 CGGTTTTGCTTTCGCGAGAG 60.451 55.000 21.42 21.42 43.69 3.20
44 45 1.155424 ACGGTTTTGCTTTCGCGAGA 61.155 50.000 9.59 3.35 39.65 4.04
45 46 0.991770 CACGGTTTTGCTTTCGCGAG 60.992 55.000 9.59 0.00 39.65 5.03
46 47 1.010574 CACGGTTTTGCTTTCGCGA 60.011 52.632 3.71 3.71 39.65 5.87
47 48 1.010574 TCACGGTTTTGCTTTCGCG 60.011 52.632 0.00 0.00 39.65 5.87
48 49 0.028902 AGTCACGGTTTTGCTTTCGC 59.971 50.000 0.00 0.00 0.00 4.70
49 50 1.597663 AGAGTCACGGTTTTGCTTTCG 59.402 47.619 0.00 0.00 0.00 3.46
50 51 2.348591 CGAGAGTCACGGTTTTGCTTTC 60.349 50.000 1.62 0.00 0.00 2.62
51 52 1.597663 CGAGAGTCACGGTTTTGCTTT 59.402 47.619 1.62 0.00 0.00 3.51
52 53 1.217882 CGAGAGTCACGGTTTTGCTT 58.782 50.000 1.62 0.00 0.00 3.91
53 54 1.222115 GCGAGAGTCACGGTTTTGCT 61.222 55.000 11.95 0.00 0.00 3.91
54 55 1.204312 GCGAGAGTCACGGTTTTGC 59.796 57.895 11.95 0.00 0.00 3.68
55 56 0.937699 TCGCGAGAGTCACGGTTTTG 60.938 55.000 3.71 0.00 34.84 2.44
56 57 0.249155 TTCGCGAGAGTCACGGTTTT 60.249 50.000 9.59 0.00 43.69 2.43
57 58 0.249155 TTTCGCGAGAGTCACGGTTT 60.249 50.000 9.59 0.00 43.69 3.27
58 59 0.663568 CTTTCGCGAGAGTCACGGTT 60.664 55.000 17.92 0.00 43.69 4.44
59 60 1.081376 CTTTCGCGAGAGTCACGGT 60.081 57.895 17.92 0.00 43.69 4.83
60 61 0.386858 TTCTTTCGCGAGAGTCACGG 60.387 55.000 24.05 0.86 43.69 4.94
61 62 1.405461 TTTCTTTCGCGAGAGTCACG 58.595 50.000 24.05 5.53 43.69 4.35
62 63 3.854286 TTTTTCTTTCGCGAGAGTCAC 57.146 42.857 24.05 0.00 43.69 3.67
102 103 3.763057 GTGCCTCTAGGAAAGGGAAAAA 58.237 45.455 0.00 0.00 35.86 1.94
103 104 2.290071 CGTGCCTCTAGGAAAGGGAAAA 60.290 50.000 0.00 0.00 35.86 2.29
104 105 1.278127 CGTGCCTCTAGGAAAGGGAAA 59.722 52.381 0.00 0.00 35.86 3.13
105 106 0.902531 CGTGCCTCTAGGAAAGGGAA 59.097 55.000 0.00 0.00 35.86 3.97
106 107 0.976073 CCGTGCCTCTAGGAAAGGGA 60.976 60.000 0.00 0.00 38.58 4.20
107 108 1.522569 CCGTGCCTCTAGGAAAGGG 59.477 63.158 0.00 0.00 38.58 3.95
108 109 1.153349 GCCGTGCCTCTAGGAAAGG 60.153 63.158 4.65 4.65 44.37 3.11
109 110 1.153349 GGCCGTGCCTCTAGGAAAG 60.153 63.158 7.58 0.00 46.69 2.62
110 111 2.987125 GGCCGTGCCTCTAGGAAA 59.013 61.111 7.58 0.00 46.69 3.13
119 120 3.723348 GAAAGTCACGGCCGTGCC 61.723 66.667 45.55 38.78 46.75 5.01
120 121 4.072088 CGAAAGTCACGGCCGTGC 62.072 66.667 45.55 38.06 45.04 5.34
121 122 4.072088 GCGAAAGTCACGGCCGTG 62.072 66.667 45.04 45.04 46.64 4.94
124 125 2.494504 CTTTCGCGAAAGTCACGGCC 62.495 60.000 40.16 0.00 42.02 6.13
125 126 1.154654 CTTTCGCGAAAGTCACGGC 60.155 57.895 40.16 0.00 42.02 5.68
127 128 3.288110 TGTGCTTTCGCGAAAGTCACG 62.288 52.381 42.02 31.13 46.25 4.35
450 451 8.936509 AAAAACAAAACGCGTTTTCTATTTTT 57.063 23.077 35.97 35.97 43.82 1.94
451 452 7.688989 GGAAAAACAAAACGCGTTTTCTATTTT 59.311 29.630 34.88 34.88 43.82 1.82
452 453 7.174746 GGAAAAACAAAACGCGTTTTCTATTT 58.825 30.769 38.94 33.90 43.82 1.40
453 454 6.237888 GGGAAAAACAAAACGCGTTTTCTATT 60.238 34.615 38.94 29.84 43.82 1.73
454 455 5.232626 GGGAAAAACAAAACGCGTTTTCTAT 59.767 36.000 38.94 26.74 43.82 1.98
455 456 4.562000 GGGAAAAACAAAACGCGTTTTCTA 59.438 37.500 38.94 0.00 43.82 2.10
456 457 3.368539 GGGAAAAACAAAACGCGTTTTCT 59.631 39.130 38.94 28.85 43.82 2.52
457 458 3.368539 AGGGAAAAACAAAACGCGTTTTC 59.631 39.130 38.94 28.37 43.82 2.29
458 459 3.327626 AGGGAAAAACAAAACGCGTTTT 58.672 36.364 36.93 36.93 45.90 2.43
459 460 2.962125 AGGGAAAAACAAAACGCGTTT 58.038 38.095 30.36 30.36 38.19 3.60
460 461 2.658373 AGGGAAAAACAAAACGCGTT 57.342 40.000 20.79 20.79 0.00 4.84
461 462 2.658373 AAGGGAAAAACAAAACGCGT 57.342 40.000 5.58 5.58 0.00 6.01
462 463 3.540551 CGAAAAGGGAAAAACAAAACGCG 60.541 43.478 3.53 3.53 0.00 6.01
463 464 3.613299 TCGAAAAGGGAAAAACAAAACGC 59.387 39.130 0.00 0.00 0.00 4.84
464 465 5.096849 TCTCGAAAAGGGAAAAACAAAACG 58.903 37.500 0.00 0.00 0.00 3.60
465 466 5.518847 CCTCTCGAAAAGGGAAAAACAAAAC 59.481 40.000 5.74 0.00 0.00 2.43
466 467 5.656480 CCTCTCGAAAAGGGAAAAACAAAA 58.344 37.500 5.74 0.00 0.00 2.44
467 468 4.440940 GCCTCTCGAAAAGGGAAAAACAAA 60.441 41.667 13.81 0.00 34.26 2.83
468 469 3.067601 GCCTCTCGAAAAGGGAAAAACAA 59.932 43.478 13.81 0.00 34.26 2.83
469 470 2.621526 GCCTCTCGAAAAGGGAAAAACA 59.378 45.455 13.81 0.00 34.26 2.83
470 471 2.621526 TGCCTCTCGAAAAGGGAAAAAC 59.378 45.455 13.81 0.00 34.26 2.43
471 472 2.621526 GTGCCTCTCGAAAAGGGAAAAA 59.378 45.455 13.81 0.00 35.86 1.94
472 473 2.227194 GTGCCTCTCGAAAAGGGAAAA 58.773 47.619 13.81 0.00 35.86 2.29
473 474 1.876416 CGTGCCTCTCGAAAAGGGAAA 60.876 52.381 13.81 0.00 35.86 3.13
474 475 0.320421 CGTGCCTCTCGAAAAGGGAA 60.320 55.000 13.81 0.00 35.86 3.97
475 476 1.292223 CGTGCCTCTCGAAAAGGGA 59.708 57.895 13.81 9.19 34.26 4.20
476 477 1.004918 ACGTGCCTCTCGAAAAGGG 60.005 57.895 13.81 2.68 34.26 3.95
477 478 1.014564 GGACGTGCCTCTCGAAAAGG 61.015 60.000 8.80 8.80 36.95 3.11
478 479 1.344942 CGGACGTGCCTCTCGAAAAG 61.345 60.000 0.00 0.00 0.00 2.27
479 480 1.372499 CGGACGTGCCTCTCGAAAA 60.372 57.895 0.00 0.00 0.00 2.29
480 481 2.257371 CGGACGTGCCTCTCGAAA 59.743 61.111 0.00 0.00 0.00 3.46
481 482 2.981909 ACGGACGTGCCTCTCGAA 60.982 61.111 0.00 0.00 0.00 3.71
482 483 3.733960 CACGGACGTGCCTCTCGA 61.734 66.667 12.16 0.00 39.39 4.04
483 484 3.733960 TCACGGACGTGCCTCTCG 61.734 66.667 19.10 0.00 45.04 4.04
484 485 2.126424 GTCACGGACGTGCCTCTC 60.126 66.667 19.10 4.52 45.04 3.20
485 486 2.597805 AGTCACGGACGTGCCTCT 60.598 61.111 19.10 13.61 45.04 3.69
486 487 2.126424 GAGTCACGGACGTGCCTC 60.126 66.667 18.10 18.10 42.51 4.70
487 488 2.597805 AGAGTCACGGACGTGCCT 60.598 61.111 19.10 14.01 45.04 4.75
488 489 2.126424 GAGAGTCACGGACGTGCC 60.126 66.667 19.10 8.93 45.04 5.01
489 490 2.502080 CGAGAGTCACGGACGTGC 60.502 66.667 19.10 13.98 45.04 5.34
490 491 2.502080 GCGAGAGTCACGGACGTG 60.502 66.667 17.97 17.97 46.64 4.49
491 492 4.086178 CGCGAGAGTCACGGACGT 62.086 66.667 11.95 0.00 37.67 4.34
492 493 2.775359 TTTCGCGAGAGTCACGGACG 62.775 60.000 9.59 7.73 43.69 4.79
493 494 1.066114 CTTTCGCGAGAGTCACGGAC 61.066 60.000 17.92 0.00 43.69 4.79
494 495 1.209383 CTTTCGCGAGAGTCACGGA 59.791 57.895 17.92 4.81 43.69 4.69
495 496 2.437343 GCTTTCGCGAGAGTCACGG 61.437 63.158 25.34 2.90 43.69 4.94
496 497 1.729484 TGCTTTCGCGAGAGTCACG 60.729 57.895 25.34 5.53 43.69 4.35
497 498 0.939577 TGTGCTTTCGCGAGAGTCAC 60.940 55.000 29.56 29.56 43.69 3.67
498 499 0.249280 TTGTGCTTTCGCGAGAGTCA 60.249 50.000 25.34 20.22 43.69 3.41
499 500 0.161870 GTTGTGCTTTCGCGAGAGTC 59.838 55.000 25.34 18.16 43.69 3.36
500 501 0.249489 AGTTGTGCTTTCGCGAGAGT 60.249 50.000 25.34 4.07 43.69 3.24
501 502 0.162507 CAGTTGTGCTTTCGCGAGAG 59.837 55.000 21.42 21.42 43.69 3.20
502 503 0.529773 ACAGTTGTGCTTTCGCGAGA 60.530 50.000 9.59 3.35 39.65 4.04
503 504 0.383491 CACAGTTGTGCTTTCGCGAG 60.383 55.000 9.59 0.00 39.39 5.03
504 505 1.641140 CACAGTTGTGCTTTCGCGA 59.359 52.632 3.71 3.71 39.39 5.87
505 506 4.194312 CACAGTTGTGCTTTCGCG 57.806 55.556 0.00 0.00 39.39 5.87
514 515 2.356313 CGCGAGAGGCACAGTTGT 60.356 61.111 0.00 0.00 43.84 3.32
515 516 3.114616 CCGCGAGAGGCACAGTTG 61.115 66.667 8.23 0.00 43.84 3.16
516 517 2.771763 CTTCCGCGAGAGGCACAGTT 62.772 60.000 8.23 0.00 43.84 3.16
517 518 3.288308 CTTCCGCGAGAGGCACAGT 62.288 63.158 8.23 0.00 43.84 3.55
518 519 2.507992 CTTCCGCGAGAGGCACAG 60.508 66.667 8.23 0.00 43.84 3.66
519 520 4.742201 GCTTCCGCGAGAGGCACA 62.742 66.667 20.89 0.00 46.54 4.57
523 524 1.497722 GTTTTGCTTCCGCGAGAGG 59.502 57.895 8.23 4.88 39.65 3.69
524 525 1.497722 GGTTTTGCTTCCGCGAGAG 59.502 57.895 8.23 5.93 39.65 3.20
525 526 2.314647 CGGTTTTGCTTCCGCGAGA 61.315 57.895 8.23 0.00 40.28 4.04
526 527 2.173382 CGGTTTTGCTTCCGCGAG 59.827 61.111 8.23 0.00 40.28 5.03
531 532 1.531578 GAGAGTCACGGTTTTGCTTCC 59.468 52.381 0.00 0.00 0.00 3.46
532 533 1.192534 CGAGAGTCACGGTTTTGCTTC 59.807 52.381 1.62 0.00 0.00 3.86
533 534 1.217882 CGAGAGTCACGGTTTTGCTT 58.782 50.000 1.62 0.00 0.00 3.91
534 535 1.222115 GCGAGAGTCACGGTTTTGCT 61.222 55.000 11.95 0.00 0.00 3.91
535 536 1.204312 GCGAGAGTCACGGTTTTGC 59.796 57.895 11.95 0.00 0.00 3.68
536 537 0.937699 TCGCGAGAGTCACGGTTTTG 60.938 55.000 3.71 0.00 34.84 2.44
537 538 0.249155 TTCGCGAGAGTCACGGTTTT 60.249 50.000 9.59 0.00 43.69 2.43
538 539 0.249155 TTTCGCGAGAGTCACGGTTT 60.249 50.000 9.59 0.00 43.69 3.27
539 540 0.663568 CTTTCGCGAGAGTCACGGTT 60.664 55.000 17.92 0.00 43.69 4.44
540 541 1.081376 CTTTCGCGAGAGTCACGGT 60.081 57.895 17.92 0.00 43.69 4.83
541 542 0.386858 TTCTTTCGCGAGAGTCACGG 60.387 55.000 24.05 0.86 43.69 4.94
542 543 1.405461 TTTCTTTCGCGAGAGTCACG 58.595 50.000 24.05 5.53 43.69 4.35
543 544 3.854286 TTTTTCTTTCGCGAGAGTCAC 57.146 42.857 24.05 0.00 43.69 3.67
598 599 2.887568 CGAGAGTCATGGCCGTGC 60.888 66.667 20.86 14.92 0.00 5.34
599 600 2.887568 GCGAGAGTCATGGCCGTG 60.888 66.667 19.62 19.62 0.00 4.94
600 601 4.498520 CGCGAGAGTCATGGCCGT 62.499 66.667 0.00 0.00 0.00 5.68
602 603 2.852495 TTTCCGCGAGAGTCATGGCC 62.852 60.000 8.23 0.00 0.00 5.36
603 604 1.019278 TTTTCCGCGAGAGTCATGGC 61.019 55.000 8.23 0.00 0.00 4.40
604 605 1.438651 TTTTTCCGCGAGAGTCATGG 58.561 50.000 8.23 0.00 0.00 3.66
623 624 2.923605 TTGCGAAAGTCACGGTTTTT 57.076 40.000 0.00 0.00 0.00 1.94
624 625 2.923605 TTTGCGAAAGTCACGGTTTT 57.076 40.000 0.00 0.00 0.00 2.43
625 626 2.478879 CCTTTTGCGAAAGTCACGGTTT 60.479 45.455 22.22 0.00 40.53 3.27
626 627 1.064952 CCTTTTGCGAAAGTCACGGTT 59.935 47.619 22.22 0.00 40.53 4.44
627 628 0.661020 CCTTTTGCGAAAGTCACGGT 59.339 50.000 22.22 0.00 40.53 4.83
628 629 0.040425 CCCTTTTGCGAAAGTCACGG 60.040 55.000 22.22 13.64 40.53 4.94
629 630 0.040425 CCCCTTTTGCGAAAGTCACG 60.040 55.000 22.22 9.04 40.53 4.35
630 631 1.314730 TCCCCTTTTGCGAAAGTCAC 58.685 50.000 22.22 0.00 40.53 3.67
631 632 2.060050 TTCCCCTTTTGCGAAAGTCA 57.940 45.000 22.22 5.59 40.53 3.41
632 633 3.446310 TTTTCCCCTTTTGCGAAAGTC 57.554 42.857 22.22 0.00 40.53 3.01
633 634 3.897141 TTTTTCCCCTTTTGCGAAAGT 57.103 38.095 22.22 0.00 40.53 2.66
682 683 6.970613 GTCTTTCTTAGCTTTTCGACCAAAAA 59.029 34.615 0.00 0.00 33.40 1.94
683 684 6.459161 GGTCTTTCTTAGCTTTTCGACCAAAA 60.459 38.462 0.00 0.00 39.47 2.44
684 685 5.008316 GGTCTTTCTTAGCTTTTCGACCAAA 59.992 40.000 0.00 0.00 39.47 3.28
685 686 4.514066 GGTCTTTCTTAGCTTTTCGACCAA 59.486 41.667 0.00 0.00 39.47 3.67
686 687 4.062991 GGTCTTTCTTAGCTTTTCGACCA 58.937 43.478 0.00 0.00 39.47 4.02
687 688 3.123116 CGGTCTTTCTTAGCTTTTCGACC 59.877 47.826 0.00 0.35 37.05 4.79
688 689 3.123116 CCGGTCTTTCTTAGCTTTTCGAC 59.877 47.826 0.00 0.00 0.00 4.20
689 690 3.323243 CCGGTCTTTCTTAGCTTTTCGA 58.677 45.455 0.00 0.00 0.00 3.71
690 691 2.415512 CCCGGTCTTTCTTAGCTTTTCG 59.584 50.000 0.00 0.00 0.00 3.46
691 692 2.747989 CCCCGGTCTTTCTTAGCTTTTC 59.252 50.000 0.00 0.00 0.00 2.29
692 693 2.374170 TCCCCGGTCTTTCTTAGCTTTT 59.626 45.455 0.00 0.00 0.00 2.27
693 694 1.982958 TCCCCGGTCTTTCTTAGCTTT 59.017 47.619 0.00 0.00 0.00 3.51
694 695 1.652947 TCCCCGGTCTTTCTTAGCTT 58.347 50.000 0.00 0.00 0.00 3.74
695 696 1.652947 TTCCCCGGTCTTTCTTAGCT 58.347 50.000 0.00 0.00 0.00 3.32
696 697 2.484742 TTTCCCCGGTCTTTCTTAGC 57.515 50.000 0.00 0.00 0.00 3.09
697 698 3.504906 GGTTTTTCCCCGGTCTTTCTTAG 59.495 47.826 0.00 0.00 0.00 2.18
698 699 3.117587 TGGTTTTTCCCCGGTCTTTCTTA 60.118 43.478 0.00 0.00 34.77 2.10
699 700 2.313317 GGTTTTTCCCCGGTCTTTCTT 58.687 47.619 0.00 0.00 0.00 2.52
700 701 1.215924 TGGTTTTTCCCCGGTCTTTCT 59.784 47.619 0.00 0.00 34.77 2.52
701 702 1.694844 TGGTTTTTCCCCGGTCTTTC 58.305 50.000 0.00 0.00 34.77 2.62
702 703 2.162264 TTGGTTTTTCCCCGGTCTTT 57.838 45.000 0.00 0.00 34.77 2.52
703 704 2.162264 TTTGGTTTTTCCCCGGTCTT 57.838 45.000 0.00 0.00 34.77 3.01
704 705 1.758280 GTTTTGGTTTTTCCCCGGTCT 59.242 47.619 0.00 0.00 34.77 3.85
705 706 1.536496 CGTTTTGGTTTTTCCCCGGTC 60.536 52.381 0.00 0.00 34.77 4.79
706 707 0.460722 CGTTTTGGTTTTTCCCCGGT 59.539 50.000 0.00 0.00 34.77 5.28
707 708 0.460722 ACGTTTTGGTTTTTCCCCGG 59.539 50.000 0.00 0.00 34.77 5.73
708 709 1.842720 GACGTTTTGGTTTTTCCCCG 58.157 50.000 0.00 0.00 34.77 5.73
709 710 1.404748 TCGACGTTTTGGTTTTTCCCC 59.595 47.619 0.00 0.00 34.77 4.81
710 711 2.847959 TCGACGTTTTGGTTTTTCCC 57.152 45.000 0.00 0.00 34.77 3.97
711 712 5.512573 TTTTTCGACGTTTTGGTTTTTCC 57.487 34.783 0.00 0.00 0.00 3.13
730 731 3.331478 AAACGTTTTTCCCGGGTTTTT 57.669 38.095 22.86 7.53 0.00 1.94
731 732 4.462508 TTAAACGTTTTTCCCGGGTTTT 57.537 36.364 22.86 11.48 33.35 2.43
732 733 4.462508 TTTAAACGTTTTTCCCGGGTTT 57.537 36.364 22.86 14.16 35.28 3.27
733 734 4.462508 TTTTAAACGTTTTTCCCGGGTT 57.537 36.364 22.86 7.21 0.00 4.11
734 735 4.431809 CTTTTTAAACGTTTTTCCCGGGT 58.568 39.130 22.86 0.00 0.00 5.28
735 736 3.245754 GCTTTTTAAACGTTTTTCCCGGG 59.754 43.478 20.19 16.85 0.00 5.73
736 737 3.245754 GGCTTTTTAAACGTTTTTCCCGG 59.754 43.478 20.19 0.00 0.00 5.73
737 738 3.061073 CGGCTTTTTAAACGTTTTTCCCG 60.061 43.478 20.19 17.12 0.00 5.14
738 739 4.111198 TCGGCTTTTTAAACGTTTTTCCC 58.889 39.130 20.19 10.13 0.00 3.97
739 740 5.699438 TTCGGCTTTTTAAACGTTTTTCC 57.301 34.783 20.19 10.12 0.00 3.13
740 741 6.188902 CGTTTTCGGCTTTTTAAACGTTTTTC 59.811 34.615 20.19 2.55 44.47 2.29
741 742 6.008275 CGTTTTCGGCTTTTTAAACGTTTTT 58.992 32.000 20.19 0.00 44.47 1.94
742 743 5.540107 CGTTTTCGGCTTTTTAAACGTTTT 58.460 33.333 20.19 3.53 44.47 2.43
743 744 5.116055 CGTTTTCGGCTTTTTAAACGTTT 57.884 34.783 18.90 18.90 44.47 3.60
744 745 4.741845 CGTTTTCGGCTTTTTAAACGTT 57.258 36.364 0.00 0.00 44.47 3.99
747 748 2.531103 ACGCGTTTTCGGCTTTTTAAAC 59.469 40.909 5.58 0.00 44.29 2.01
748 749 2.530700 CACGCGTTTTCGGCTTTTTAAA 59.469 40.909 10.22 0.00 44.29 1.52
749 750 2.110226 CACGCGTTTTCGGCTTTTTAA 58.890 42.857 10.22 0.00 44.29 1.52
750 751 1.744374 CACGCGTTTTCGGCTTTTTA 58.256 45.000 10.22 0.00 44.29 1.52
751 752 1.476235 GCACGCGTTTTCGGCTTTTT 61.476 50.000 10.22 0.00 44.29 1.94
752 753 1.942223 GCACGCGTTTTCGGCTTTT 60.942 52.632 10.22 0.00 44.29 2.27
753 754 2.353030 GCACGCGTTTTCGGCTTT 60.353 55.556 10.22 0.00 44.29 3.51
754 755 4.659874 CGCACGCGTTTTCGGCTT 62.660 61.111 10.22 0.00 44.29 4.35
756 757 4.653252 TTCGCACGCGTTTTCGGC 62.653 61.111 10.22 9.05 44.29 5.54
757 758 1.194896 TTTTTCGCACGCGTTTTCGG 61.195 50.000 10.22 0.00 44.29 4.30
781 782 6.584942 GGACGCTTCTTTCGGATTTTATTTTT 59.415 34.615 0.00 0.00 0.00 1.94
782 783 6.090783 GGACGCTTCTTTCGGATTTTATTTT 58.909 36.000 0.00 0.00 0.00 1.82
783 784 5.182380 TGGACGCTTCTTTCGGATTTTATTT 59.818 36.000 0.00 0.00 0.00 1.40
784 785 4.698304 TGGACGCTTCTTTCGGATTTTATT 59.302 37.500 0.00 0.00 0.00 1.40
785 786 4.258543 TGGACGCTTCTTTCGGATTTTAT 58.741 39.130 0.00 0.00 0.00 1.40
786 787 3.666274 TGGACGCTTCTTTCGGATTTTA 58.334 40.909 0.00 0.00 0.00 1.52
787 788 2.484264 CTGGACGCTTCTTTCGGATTTT 59.516 45.455 0.00 0.00 0.00 1.82
788 789 2.076863 CTGGACGCTTCTTTCGGATTT 58.923 47.619 0.00 0.00 0.00 2.17
789 790 1.275291 TCTGGACGCTTCTTTCGGATT 59.725 47.619 0.00 0.00 0.00 3.01
790 791 0.895530 TCTGGACGCTTCTTTCGGAT 59.104 50.000 0.00 0.00 0.00 4.18
791 792 0.243907 CTCTGGACGCTTCTTTCGGA 59.756 55.000 0.00 0.00 0.00 4.55
792 793 1.355066 GCTCTGGACGCTTCTTTCGG 61.355 60.000 0.00 0.00 0.00 4.30
793 794 1.678269 CGCTCTGGACGCTTCTTTCG 61.678 60.000 0.00 0.00 0.00 3.46
794 795 2.074124 CGCTCTGGACGCTTCTTTC 58.926 57.895 0.00 0.00 0.00 2.62
795 796 4.268687 CGCTCTGGACGCTTCTTT 57.731 55.556 0.00 0.00 0.00 2.52
803 804 4.702081 ACGTGTCGCGCTCTGGAC 62.702 66.667 5.56 5.97 46.11 4.02
804 805 4.700365 CACGTGTCGCGCTCTGGA 62.700 66.667 7.58 0.00 46.11 3.86
812 813 4.147322 CCATTCGCCACGTGTCGC 62.147 66.667 15.09 10.47 0.00 5.19
813 814 4.147322 GCCATTCGCCACGTGTCG 62.147 66.667 13.61 13.61 0.00 4.35
814 815 2.742372 AGCCATTCGCCACGTGTC 60.742 61.111 15.65 0.00 38.78 3.67
815 816 3.049674 CAGCCATTCGCCACGTGT 61.050 61.111 15.65 0.00 38.78 4.49
816 817 2.741985 TCAGCCATTCGCCACGTG 60.742 61.111 9.08 9.08 38.78 4.49
817 818 2.434884 CTCAGCCATTCGCCACGT 60.435 61.111 0.00 0.00 38.78 4.49
818 819 2.125552 TCTCAGCCATTCGCCACG 60.126 61.111 0.00 0.00 38.78 4.94
819 820 2.467826 GCTCTCAGCCATTCGCCAC 61.468 63.158 0.00 0.00 38.78 5.01
820 821 2.124983 GCTCTCAGCCATTCGCCA 60.125 61.111 0.00 0.00 38.78 5.69
821 822 3.267860 CGCTCTCAGCCATTCGCC 61.268 66.667 0.00 0.00 38.18 5.54
822 823 2.510238 ACGCTCTCAGCCATTCGC 60.510 61.111 0.00 0.00 38.18 4.70
823 824 2.806856 GCACGCTCTCAGCCATTCG 61.807 63.158 0.00 0.00 38.18 3.34
824 825 2.806856 CGCACGCTCTCAGCCATTC 61.807 63.158 0.00 0.00 38.18 2.67
825 826 2.786539 TTCGCACGCTCTCAGCCATT 62.787 55.000 0.00 0.00 38.18 3.16
826 827 3.300934 TTCGCACGCTCTCAGCCAT 62.301 57.895 0.00 0.00 38.18 4.40
827 828 3.921767 CTTCGCACGCTCTCAGCCA 62.922 63.158 0.00 0.00 38.18 4.75
828 829 3.184683 CTTCGCACGCTCTCAGCC 61.185 66.667 0.00 0.00 38.18 4.85
829 830 2.431601 ACTTCGCACGCTCTCAGC 60.432 61.111 0.00 0.00 38.02 4.26
830 831 2.091112 CCACTTCGCACGCTCTCAG 61.091 63.158 0.00 0.00 0.00 3.35
831 832 2.049156 CCACTTCGCACGCTCTCA 60.049 61.111 0.00 0.00 0.00 3.27
832 833 3.482783 GCCACTTCGCACGCTCTC 61.483 66.667 0.00 0.00 0.00 3.20
841 842 0.667487 TTTCTGAGAGCGCCACTTCG 60.667 55.000 2.29 0.00 0.00 3.79
842 843 1.074752 CTTTCTGAGAGCGCCACTTC 58.925 55.000 2.29 0.00 0.00 3.01
843 844 0.952984 GCTTTCTGAGAGCGCCACTT 60.953 55.000 2.29 0.00 0.00 3.16
844 845 1.375268 GCTTTCTGAGAGCGCCACT 60.375 57.895 2.29 3.56 0.00 4.00
845 846 1.633852 CTGCTTTCTGAGAGCGCCAC 61.634 60.000 14.51 0.00 43.02 5.01
846 847 1.375140 CTGCTTTCTGAGAGCGCCA 60.375 57.895 14.51 0.00 43.02 5.69
847 848 2.105466 CCTGCTTTCTGAGAGCGCC 61.105 63.158 14.51 0.00 43.02 6.53
848 849 0.671781 TTCCTGCTTTCTGAGAGCGC 60.672 55.000 14.51 0.00 43.02 5.92
849 850 1.074752 GTTCCTGCTTTCTGAGAGCG 58.925 55.000 14.51 9.57 43.02 5.03
850 851 2.175878 TGTTCCTGCTTTCTGAGAGC 57.824 50.000 12.85 12.85 40.53 4.09
851 852 2.478134 CGTTGTTCCTGCTTTCTGAGAG 59.522 50.000 0.00 0.00 0.00 3.20
852 853 2.158957 ACGTTGTTCCTGCTTTCTGAGA 60.159 45.455 0.00 0.00 0.00 3.27
853 854 2.213499 ACGTTGTTCCTGCTTTCTGAG 58.787 47.619 0.00 0.00 0.00 3.35
854 855 2.210116 GACGTTGTTCCTGCTTTCTGA 58.790 47.619 0.00 0.00 0.00 3.27
855 856 1.939934 TGACGTTGTTCCTGCTTTCTG 59.060 47.619 0.00 0.00 0.00 3.02
856 857 2.325583 TGACGTTGTTCCTGCTTTCT 57.674 45.000 0.00 0.00 0.00 2.52
857 858 2.716398 GTTGACGTTGTTCCTGCTTTC 58.284 47.619 0.00 0.00 0.00 2.62
858 859 1.063469 CGTTGACGTTGTTCCTGCTTT 59.937 47.619 0.00 0.00 34.11 3.51
859 860 0.655733 CGTTGACGTTGTTCCTGCTT 59.344 50.000 0.00 0.00 34.11 3.91
860 861 1.157870 CCGTTGACGTTGTTCCTGCT 61.158 55.000 2.63 0.00 37.74 4.24
861 862 1.278637 CCGTTGACGTTGTTCCTGC 59.721 57.895 2.63 0.00 37.74 4.85
862 863 1.790623 CTACCGTTGACGTTGTTCCTG 59.209 52.381 2.63 0.00 37.74 3.86
863 864 1.410153 ACTACCGTTGACGTTGTTCCT 59.590 47.619 2.63 0.00 37.74 3.36
864 865 1.523934 CACTACCGTTGACGTTGTTCC 59.476 52.381 2.63 0.00 37.74 3.62
865 866 1.071041 GCACTACCGTTGACGTTGTTC 60.071 52.381 2.63 0.00 37.74 3.18
866 867 0.932399 GCACTACCGTTGACGTTGTT 59.068 50.000 2.63 0.00 37.74 2.83
867 868 1.210545 CGCACTACCGTTGACGTTGT 61.211 55.000 2.63 0.00 37.74 3.32
868 869 1.210545 ACGCACTACCGTTGACGTTG 61.211 55.000 2.63 0.00 38.47 4.10
869 870 0.310543 TACGCACTACCGTTGACGTT 59.689 50.000 9.84 0.00 42.20 3.99
870 871 0.110056 CTACGCACTACCGTTGACGT 60.110 55.000 2.63 0.00 42.20 4.34
871 872 1.400990 GCTACGCACTACCGTTGACG 61.401 60.000 0.00 0.00 42.20 4.35
872 873 0.387622 TGCTACGCACTACCGTTGAC 60.388 55.000 0.78 0.00 42.20 3.18
873 874 0.528924 ATGCTACGCACTACCGTTGA 59.471 50.000 0.78 0.00 43.04 3.18
874 875 0.645355 CATGCTACGCACTACCGTTG 59.355 55.000 0.00 0.00 43.04 4.10
875 876 0.245539 ACATGCTACGCACTACCGTT 59.754 50.000 0.00 0.00 43.04 4.44
876 877 0.457853 CACATGCTACGCACTACCGT 60.458 55.000 0.00 0.00 43.04 4.83
877 878 0.179148 TCACATGCTACGCACTACCG 60.179 55.000 0.00 0.00 43.04 4.02
878 879 1.134367 TCTCACATGCTACGCACTACC 59.866 52.381 0.00 0.00 43.04 3.18
879 880 2.561733 TCTCACATGCTACGCACTAC 57.438 50.000 0.00 0.00 43.04 2.73
880 881 3.586100 TTTCTCACATGCTACGCACTA 57.414 42.857 0.00 0.00 43.04 2.74
881 882 2.455674 TTTCTCACATGCTACGCACT 57.544 45.000 0.00 0.00 43.04 4.40
898 899 2.024414 GATCAGCCCGGTAGCATTTTT 58.976 47.619 0.00 0.00 34.23 1.94
903 904 1.689233 AAGGATCAGCCCGGTAGCA 60.689 57.895 0.00 0.00 37.37 3.49
906 907 2.070039 CCCAAGGATCAGCCCGGTA 61.070 63.158 0.00 0.00 37.37 4.02
982 987 0.531974 GCACTTCGGTGGTCTTGACA 60.532 55.000 3.08 0.00 45.39 3.58
1056 2184 1.152881 GATGGATGCCTTCCCGCTT 60.153 57.895 0.66 0.00 44.77 4.68
1177 2308 3.811083 TCAAGAAACCTAAAACGGAGCA 58.189 40.909 0.00 0.00 0.00 4.26
1181 2312 6.204882 AGACAAGATCAAGAAACCTAAAACGG 59.795 38.462 0.00 0.00 0.00 4.44
1272 2403 0.594602 GCGGTGTAAAAACCTCACCC 59.405 55.000 7.78 0.00 45.97 4.61
1403 4067 5.106436 CGGGTAAACAGATTCCCTTTTGTAC 60.106 44.000 0.00 0.00 37.92 2.90
1475 4139 9.778741 TGACTCCATATAACAATTAACTCCATC 57.221 33.333 0.00 0.00 0.00 3.51
1526 4192 6.932400 ACAAGTTAGACCAATTTCATCGTACA 59.068 34.615 0.00 0.00 0.00 2.90
1538 4204 4.566545 TCGTCGTAACAAGTTAGACCAA 57.433 40.909 12.57 4.29 0.00 3.67
1544 4210 5.097529 GTGATCCATCGTCGTAACAAGTTA 58.902 41.667 0.00 0.00 0.00 2.24
1546 4212 3.508762 GTGATCCATCGTCGTAACAAGT 58.491 45.455 0.00 0.00 0.00 3.16
1566 4232 3.161450 ACGTCTGTGGGCAGTGGT 61.161 61.111 0.00 0.00 43.05 4.16
1574 4240 3.062099 CGTCCATTTTATCACGTCTGTGG 59.938 47.826 0.00 0.00 46.42 4.17
1595 4261 1.448985 ACGATGGTTGAAATCCACCG 58.551 50.000 0.00 0.00 46.35 4.94
1666 4340 6.992063 ACCGGCTTCATATCATATTGAATC 57.008 37.500 0.00 0.00 31.83 2.52
1676 4350 3.632145 ACATGGAAAACCGGCTTCATATC 59.368 43.478 16.42 0.00 0.00 1.63
1809 5344 9.214957 CGCTTATGTCCCACATTTCTATAATAA 57.785 33.333 0.00 0.00 39.88 1.40
1825 5360 4.945246 TGGATCTAACTTCGCTTATGTCC 58.055 43.478 0.00 0.00 0.00 4.02
1971 5551 2.885135 ATGCTGTTGAGAACCATCCA 57.115 45.000 0.00 0.00 0.00 3.41
2011 5592 9.267084 GTAGAATATTTCTGTTCCTTCTCATCC 57.733 37.037 0.07 0.00 40.94 3.51
2228 5809 6.439375 ACCTGTATTGGCTATGGATCGTATTA 59.561 38.462 0.00 0.00 0.00 0.98
2233 5814 3.685139 ACCTGTATTGGCTATGGATCG 57.315 47.619 0.00 0.00 0.00 3.69
2261 5843 2.990479 CTGGGTGCCTGGGACTAC 59.010 66.667 18.16 11.75 0.00 2.73
2289 5871 5.242838 CCCAGACATAAGCCAGTTACAAAAA 59.757 40.000 0.00 0.00 0.00 1.94
2427 6009 3.330701 AGGCATTCCTGTGGTAGAAAAGA 59.669 43.478 0.00 0.00 42.34 2.52
2501 6083 9.254133 CAGTACCAATTTACTCTAGATGATGTG 57.746 37.037 0.00 0.00 29.30 3.21
2841 6442 8.109634 ACCATGGATTATCCTCATTATGTTACC 58.890 37.037 21.47 0.00 37.46 2.85
2977 6578 1.277739 CTGCACACACTGAACTGCG 59.722 57.895 0.00 0.00 31.96 5.18
2993 6598 5.311265 ACCATATCCAGACATAATGCACTG 58.689 41.667 0.00 0.00 0.00 3.66
3030 6644 8.071368 CAGTGCTCAATGTTTTTATGCATTTTT 58.929 29.630 3.54 0.00 33.55 1.94
3156 6770 3.848726 ACTGTCAACCTTGTTGCAAAAG 58.151 40.909 0.00 7.50 0.00 2.27
3265 6879 8.506437 CAGTGTTAAACTCTGCATTAATCTTCA 58.494 33.333 0.00 0.00 36.83 3.02
3327 6941 3.641434 ATGATAAACCAGCTGCTCAGT 57.359 42.857 8.66 0.00 0.00 3.41
3419 7033 3.920231 TCTGTGAATGCATAAGAGGCT 57.080 42.857 0.00 0.00 0.00 4.58
3475 7089 3.177884 ACAGCAAGCTCCCCCACA 61.178 61.111 0.00 0.00 0.00 4.17
3478 7092 2.270527 GAGACAGCAAGCTCCCCC 59.729 66.667 0.00 0.00 0.00 5.40
3727 7342 6.015772 TGCAACATCATTATGCTGATATGCTT 60.016 34.615 18.30 0.00 42.41 3.91
3854 7469 4.079787 AGCATCCCTCTAAACCTGCAATAA 60.080 41.667 0.00 0.00 32.18 1.40
3964 7579 3.243535 CCAAGGAGGAAAGAACAAACAGC 60.244 47.826 0.00 0.00 41.22 4.40
3987 7602 2.747460 GCCATCGGCTGCTTGACA 60.747 61.111 0.00 0.00 46.69 3.58
4022 7637 1.268283 GGTTGGGGAGGAGAGAGGTG 61.268 65.000 0.00 0.00 0.00 4.00
4295 7910 7.453393 TCATGATTCTCCAAGTAGAAACAGTT 58.547 34.615 0.00 0.00 40.31 3.16
4373 7988 3.517100 TCCTCTCCCTTTCTTCATGTGAG 59.483 47.826 0.00 0.00 0.00 3.51
4376 7991 3.796111 TCTCCTCTCCCTTTCTTCATGT 58.204 45.455 0.00 0.00 0.00 3.21
4377 7992 5.011943 CCTATCTCCTCTCCCTTTCTTCATG 59.988 48.000 0.00 0.00 0.00 3.07
4378 7993 5.102870 TCCTATCTCCTCTCCCTTTCTTCAT 60.103 44.000 0.00 0.00 0.00 2.57
4393 8008 3.895232 TCAAGCTGTGTTCCTATCTCC 57.105 47.619 0.00 0.00 0.00 3.71
4399 8014 3.067320 GCTTTTCTTCAAGCTGTGTTCCT 59.933 43.478 0.00 0.00 45.03 3.36
4423 8038 7.295930 AGATTTGAGAACGAAAATTCCGTAAC 58.704 34.615 6.32 4.94 39.57 2.50
4428 8043 5.797434 GCAGAGATTTGAGAACGAAAATTCC 59.203 40.000 0.00 0.00 0.00 3.01
4435 8050 3.990469 GACAAGCAGAGATTTGAGAACGA 59.010 43.478 0.00 0.00 0.00 3.85
4438 8053 4.202398 ACCAGACAAGCAGAGATTTGAGAA 60.202 41.667 0.00 0.00 0.00 2.87
4439 8054 3.326006 ACCAGACAAGCAGAGATTTGAGA 59.674 43.478 0.00 0.00 0.00 3.27
4442 8057 3.611057 GCAACCAGACAAGCAGAGATTTG 60.611 47.826 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.