Multiple sequence alignment - TraesCS5D01G115000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G115000 chr5D 100.000 3472 0 0 1 3472 134788004 134784533 0.000000e+00 6412
1 TraesCS5D01G115000 chr5B 92.627 2984 125 42 548 3472 146269542 146266595 0.000000e+00 4204
2 TraesCS5D01G115000 chr5B 96.111 540 20 1 1 539 146270500 146269961 0.000000e+00 880
3 TraesCS5D01G115000 chr5B 87.943 141 16 1 1 140 502495924 502496064 7.710000e-37 165
4 TraesCS5D01G115000 chr5A 92.643 1903 90 21 1595 3472 158931934 158930057 0.000000e+00 2693
5 TraesCS5D01G115000 chr5A 86.767 801 35 27 757 1507 158932724 158931945 0.000000e+00 826
6 TraesCS5D01G115000 chr5A 84.348 345 17 6 448 760 158933298 158932959 1.570000e-78 303
7 TraesCS5D01G115000 chr5A 87.407 135 14 2 206 339 158933587 158933455 6.000000e-33 152
8 TraesCS5D01G115000 chr1D 89.333 150 15 1 1 149 476433106 476432957 1.650000e-43 187
9 TraesCS5D01G115000 chr7D 88.966 145 13 3 1 143 552930868 552931011 3.560000e-40 176
10 TraesCS5D01G115000 chr7D 91.837 98 8 0 1505 1602 531177979 531177882 1.680000e-28 137
11 TraesCS5D01G115000 chr7A 87.692 130 14 2 16 144 151859496 151859624 2.160000e-32 150
12 TraesCS5D01G115000 chr7A 94.565 92 5 0 1513 1604 682442459 682442550 3.610000e-30 143
13 TraesCS5D01G115000 chr3B 87.692 130 14 2 16 144 486620387 486620259 2.160000e-32 150
14 TraesCS5D01G115000 chr3B 94.681 94 3 2 1517 1609 485691402 485691494 1.000000e-30 145
15 TraesCS5D01G115000 chr4A 95.699 93 3 1 1513 1604 603447582 603447674 7.760000e-32 148
16 TraesCS5D01G115000 chr3D 86.765 136 15 3 16 149 7409686 7409552 7.760000e-32 148
17 TraesCS5D01G115000 chr3D 83.893 149 23 1 2 149 603231503 603231355 1.300000e-29 141
18 TraesCS5D01G115000 chr7B 95.556 90 4 0 1514 1603 701408178 701408267 1.000000e-30 145
19 TraesCS5D01G115000 chr6D 95.506 89 4 0 1516 1604 199210413 199210325 3.610000e-30 143
20 TraesCS5D01G115000 chr4D 86.364 132 17 1 16 146 30370105 30370236 3.610000e-30 143
21 TraesCS5D01G115000 chr1B 95.506 89 4 0 1515 1603 628049900 628049812 3.610000e-30 143
22 TraesCS5D01G115000 chr2D 94.444 90 5 0 1513 1602 32020716 32020805 4.670000e-29 139
23 TraesCS5D01G115000 chr1A 91.837 98 8 0 1514 1611 518662848 518662751 1.680000e-28 137


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G115000 chr5D 134784533 134788004 3471 True 6412.0 6412 100.00000 1 3472 1 chr5D.!!$R1 3471
1 TraesCS5D01G115000 chr5B 146266595 146270500 3905 True 2542.0 4204 94.36900 1 3472 2 chr5B.!!$R1 3471
2 TraesCS5D01G115000 chr5A 158930057 158933587 3530 True 993.5 2693 87.79125 206 3472 4 chr5A.!!$R1 3266

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
98 99 0.179129 GCAAGCCCATCGTGGATTTG 60.179 55.000 5.71 9.55 40.96 2.32 F
786 1518 0.251077 CTGGCTCTTTGCTTCCACCT 60.251 55.000 0.00 0.00 42.39 4.00 F
1170 1947 1.008449 CTCTACTCTTCCCCCTTCCCA 59.992 57.143 0.00 0.00 0.00 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1156 1932 0.123266 AGGATTGGGAAGGGGGAAGA 59.877 55.0 0.00 0.00 0.0 2.87 R
2220 3055 0.593128 GTTGGTGCAGGTGTCATGAC 59.407 55.0 19.27 19.27 0.0 3.06 R
2812 3652 0.249868 GTGCCAGTTCTTTTTGGGGC 60.250 55.0 0.00 0.00 41.7 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 2.046892 GCAGCGCCTCCAAGAAGA 60.047 61.111 2.29 0.00 0.00 2.87
48 49 2.228822 GCGCCTCCAAGAAGAAAAATGA 59.771 45.455 0.00 0.00 0.00 2.57
54 55 4.541705 TCCAAGAAGAAAAATGACACCCA 58.458 39.130 0.00 0.00 0.00 4.51
88 89 2.831742 CAGCATCGGCAAGCCCAT 60.832 61.111 5.34 0.00 44.61 4.00
98 99 0.179129 GCAAGCCCATCGTGGATTTG 60.179 55.000 5.71 9.55 40.96 2.32
99 100 0.179129 CAAGCCCATCGTGGATTTGC 60.179 55.000 5.71 1.47 40.96 3.68
111 113 1.034292 GGATTTGCCTGGCCTGAGTC 61.034 60.000 17.53 8.32 0.00 3.36
143 145 0.755686 AAGTCGCCAGATCAGGATCC 59.244 55.000 8.61 2.48 38.58 3.36
144 146 1.006805 GTCGCCAGATCAGGATCCG 60.007 63.158 8.61 2.31 38.58 4.18
153 155 1.773054 ATCAGGATCCGACGACGACG 61.773 60.000 12.66 12.66 42.66 5.12
158 160 0.856490 GATCCGACGACGACGACTTG 60.856 60.000 20.63 4.48 42.66 3.16
245 247 8.533569 TGAGTAGTGTGATGATTTACCATAGA 57.466 34.615 0.00 0.00 0.00 1.98
544 598 2.545526 CGAGAGAGAGAGAGAGCATGTC 59.454 54.545 0.00 0.00 0.00 3.06
786 1518 0.251077 CTGGCTCTTTGCTTCCACCT 60.251 55.000 0.00 0.00 42.39 4.00
911 1658 9.506018 CATTTACCACCATATAATCATCACTCA 57.494 33.333 0.00 0.00 0.00 3.41
916 1663 4.913355 ACCATATAATCATCACTCACCCCA 59.087 41.667 0.00 0.00 0.00 4.96
988 1760 2.006056 GCAGCTTGCAGATCGAGAGTT 61.006 52.381 0.00 0.00 44.26 3.01
989 1761 1.925847 CAGCTTGCAGATCGAGAGTTC 59.074 52.381 0.00 0.00 0.00 3.01
1153 1929 3.103080 CCCTCAAGGTACTACCACTCT 57.897 52.381 8.01 0.00 41.95 3.24
1154 1930 4.246712 CCCTCAAGGTACTACCACTCTA 57.753 50.000 8.01 0.00 41.95 2.43
1156 1932 4.325187 CCCTCAAGGTACTACCACTCTACT 60.325 50.000 8.01 0.00 41.95 2.57
1159 1936 6.137104 TCAAGGTACTACCACTCTACTCTT 57.863 41.667 8.01 0.00 41.95 2.85
1166 1943 1.437547 ACCACTCTACTCTTCCCCCTT 59.562 52.381 0.00 0.00 0.00 3.95
1170 1947 1.008449 CTCTACTCTTCCCCCTTCCCA 59.992 57.143 0.00 0.00 0.00 4.37
1171 1948 1.439543 TCTACTCTTCCCCCTTCCCAA 59.560 52.381 0.00 0.00 0.00 4.12
1195 1972 2.971330 CTCAGTCCTCCTGCCTCATATT 59.029 50.000 0.00 0.00 41.25 1.28
1196 1973 2.968574 TCAGTCCTCCTGCCTCATATTC 59.031 50.000 0.00 0.00 41.25 1.75
1197 1974 2.702478 CAGTCCTCCTGCCTCATATTCA 59.298 50.000 0.00 0.00 33.59 2.57
1198 1975 2.703007 AGTCCTCCTGCCTCATATTCAC 59.297 50.000 0.00 0.00 0.00 3.18
1207 1997 6.327365 TCCTGCCTCATATTCACTTTGAGATA 59.673 38.462 0.90 0.00 39.36 1.98
1514 2323 7.283329 TCTCTGCAGAGTGTAGTAGATCATTA 58.717 38.462 36.32 13.94 42.60 1.90
1531 2340 6.490721 AGATCATTAGTACTCCCTCCGTAAAG 59.509 42.308 0.00 0.00 0.00 1.85
1532 2341 5.759059 TCATTAGTACTCCCTCCGTAAAGA 58.241 41.667 0.00 0.00 0.00 2.52
1542 2351 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
1688 2510 4.223320 TCTTCTTTTCGAACCATGCAAC 57.777 40.909 0.00 0.00 0.00 4.17
1701 2523 2.635714 CATGCAACAGAGCTCCATGTA 58.364 47.619 10.93 7.16 34.99 2.29
1883 2710 6.209192 TGGTGATGCTTATCATGAGTGTTTTT 59.791 34.615 0.09 0.00 35.05 1.94
1928 2755 2.987547 AGCGCATTTGCTGGCACT 60.988 55.556 11.47 0.00 45.28 4.40
1951 2778 5.640189 AGAGAGAAATGTTTTGGATGCAG 57.360 39.130 0.00 0.00 0.00 4.41
2037 2872 8.972127 GTATCTGCATTATTATCCTCTGGACTA 58.028 37.037 0.00 0.00 32.98 2.59
2077 2912 9.059260 GGAGTTTCCTTTACTTAACAACATGTA 57.941 33.333 0.00 0.00 32.53 2.29
2088 2923 6.886459 ACTTAACAACATGTAGCTGGATTCAT 59.114 34.615 0.00 0.00 0.00 2.57
2089 2924 7.394359 ACTTAACAACATGTAGCTGGATTCATT 59.606 33.333 0.00 0.00 0.00 2.57
2090 2925 5.824904 ACAACATGTAGCTGGATTCATTC 57.175 39.130 0.00 0.00 0.00 2.67
2091 2926 5.255687 ACAACATGTAGCTGGATTCATTCA 58.744 37.500 0.00 0.00 0.00 2.57
2138 2973 7.495055 AGTTGGGCATTCAATTATTCATCTTC 58.505 34.615 0.00 0.00 0.00 2.87
2156 2991 9.573166 TTCATCTTCCTTTTTCTGTGATAAGAA 57.427 29.630 0.00 0.00 34.36 2.52
2220 3055 3.534554 TGCATACATAACAGTGCTCTGG 58.465 45.455 19.27 4.69 45.14 3.86
2231 3066 0.322975 GTGCTCTGGTCATGACACCT 59.677 55.000 26.47 0.00 37.34 4.00
2258 3093 4.067896 CAACTCTGCAGGTTACTGTGAAT 58.932 43.478 15.13 0.00 46.62 2.57
2390 3225 2.026449 CCAGCTGATCAAAGAGAAGGGT 60.026 50.000 17.39 0.00 0.00 4.34
2426 3261 0.742505 AGAACGACCACGACAAGACA 59.257 50.000 0.00 0.00 42.66 3.41
2590 3425 1.926561 TCGAGATCAAGTGCATTCCG 58.073 50.000 0.00 0.00 0.00 4.30
2666 3501 6.476053 GTCAAAATATCTCTACCTGGTTCGAC 59.524 42.308 3.84 0.00 0.00 4.20
2674 3509 0.603707 ACCTGGTTCGACGACGTCTA 60.604 55.000 24.36 12.28 40.69 2.59
2677 3512 0.179181 TGGTTCGACGACGTCTATGC 60.179 55.000 24.36 12.04 40.69 3.14
2695 3530 2.358957 TGCGCATACAAGCAAGAGAAT 58.641 42.857 5.66 0.00 40.78 2.40
2739 3577 8.865244 TTGTCTAAAGAATAGGTAATAGGGGT 57.135 34.615 0.00 0.00 0.00 4.95
2786 3626 9.181805 GAATAAAACTCTGAACAACTTTAAGCC 57.818 33.333 0.00 0.00 0.00 4.35
2812 3652 4.543692 CACAGAAAAGAAATGAGCTGGTG 58.456 43.478 0.00 0.00 0.00 4.17
2825 3665 0.249868 GCTGGTGCCCCAAAAAGAAC 60.250 55.000 0.00 0.00 41.27 3.01
2826 3666 1.413118 CTGGTGCCCCAAAAAGAACT 58.587 50.000 0.00 0.00 41.27 3.01
2829 3669 0.249868 GTGCCCCAAAAAGAACTGGC 60.250 55.000 0.00 0.00 39.33 4.85
2891 3731 6.300354 AGACATTACAACAAGCTGTACAAC 57.700 37.500 0.00 0.00 31.52 3.32
2892 3732 5.238650 AGACATTACAACAAGCTGTACAACC 59.761 40.000 0.00 0.00 31.52 3.77
2942 3782 7.881246 CGATAGAACAAAGCTTTCTAGCAGGG 61.881 46.154 17.56 5.36 45.32 4.45
2967 3807 9.494271 GGTTGAAGCAAGTAATGATAGATCATA 57.506 33.333 5.45 0.00 46.22 2.15
3109 3949 8.449397 GCAAATATCTTAAGATATCACTGGCAG 58.551 37.037 29.59 14.16 44.51 4.85
3123 3963 3.067180 CACTGGCAGGCCATTTATAACAG 59.933 47.826 20.34 4.13 46.15 3.16
3124 3964 2.624838 CTGGCAGGCCATTTATAACAGG 59.375 50.000 14.30 0.00 46.15 4.00
3126 3966 2.666317 GCAGGCCATTTATAACAGGGT 58.334 47.619 5.01 0.00 0.00 4.34
3130 3970 5.648092 GCAGGCCATTTATAACAGGGTATAG 59.352 44.000 5.01 0.00 0.00 1.31
3258 4102 9.607333 AGTTCAGATACATAAATCAGATAGGGA 57.393 33.333 0.00 0.00 0.00 4.20
3371 4216 2.214216 CGACCAACCTGTCCCTGGA 61.214 63.158 0.00 0.00 34.16 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 2.650322 ACACTCGTGGGTGTCATTTTT 58.350 42.857 0.00 0.00 45.94 1.94
86 87 1.434696 GCCAGGCAAATCCACGATG 59.565 57.895 6.55 0.00 37.29 3.84
88 89 2.361104 GGCCAGGCAAATCCACGA 60.361 61.111 15.19 0.00 37.29 4.35
98 99 2.583520 CTCAGACTCAGGCCAGGC 59.416 66.667 5.01 1.26 0.00 4.85
99 100 1.834856 TTGCTCAGACTCAGGCCAGG 61.835 60.000 5.01 0.00 0.00 4.45
111 113 0.449388 GCGACTTTGGGATTGCTCAG 59.551 55.000 0.00 0.00 0.00 3.35
143 145 1.791283 GTCCAAGTCGTCGTCGTCG 60.791 63.158 5.50 5.50 38.33 5.12
144 146 1.791283 CGTCCAAGTCGTCGTCGTC 60.791 63.158 1.33 0.00 38.33 4.20
153 155 0.683412 ACAAGGTACCCGTCCAAGTC 59.317 55.000 8.74 0.00 0.00 3.01
158 160 1.876497 TACGCACAAGGTACCCGTCC 61.876 60.000 15.12 0.00 33.79 4.79
333 335 9.990360 ACCTGAAATTTTTAATTCCGTAACATT 57.010 25.926 0.00 0.00 0.00 2.71
388 422 7.176690 CCAATAGAGGATGTAAAAGTTGGTGTT 59.823 37.037 0.00 0.00 31.37 3.32
544 598 9.581099 AAAAAGCCACGGTAATTTATATTCTTG 57.419 29.630 0.00 0.00 0.00 3.02
786 1518 4.324254 GGTGAGACAGGGAATAATGTTGGA 60.324 45.833 0.00 0.00 0.00 3.53
911 1658 3.966543 CCCGACAAGCCTTGGGGT 61.967 66.667 9.64 0.00 38.03 4.95
916 1663 2.788191 CTTCGCTCCCGACAAGCCTT 62.788 60.000 0.00 0.00 44.30 4.35
988 1760 4.161295 CGCCATTGCCTCTCCCGA 62.161 66.667 0.00 0.00 0.00 5.14
989 1761 4.161295 TCGCCATTGCCTCTCCCG 62.161 66.667 0.00 0.00 0.00 5.14
1148 1924 2.112190 GGAAGGGGGAAGAGTAGAGTG 58.888 57.143 0.00 0.00 0.00 3.51
1149 1925 1.008571 GGGAAGGGGGAAGAGTAGAGT 59.991 57.143 0.00 0.00 0.00 3.24
1153 1929 2.488836 GATTGGGAAGGGGGAAGAGTA 58.511 52.381 0.00 0.00 0.00 2.59
1154 1930 1.299939 GATTGGGAAGGGGGAAGAGT 58.700 55.000 0.00 0.00 0.00 3.24
1156 1932 0.123266 AGGATTGGGAAGGGGGAAGA 59.877 55.000 0.00 0.00 0.00 2.87
1159 1936 0.624500 CTGAGGATTGGGAAGGGGGA 60.625 60.000 0.00 0.00 0.00 4.81
1166 1943 0.719015 AGGAGGACTGAGGATTGGGA 59.281 55.000 0.00 0.00 0.00 4.37
1195 1972 7.933577 AGTTGAACAAGTGATATCTCAAAGTGA 59.066 33.333 3.98 0.00 31.85 3.41
1196 1973 8.092521 AGTTGAACAAGTGATATCTCAAAGTG 57.907 34.615 3.98 1.20 31.85 3.16
1197 1974 8.562892 CAAGTTGAACAAGTGATATCTCAAAGT 58.437 33.333 3.98 0.00 31.85 2.66
1198 1975 8.562892 ACAAGTTGAACAAGTGATATCTCAAAG 58.437 33.333 10.54 1.90 31.85 2.77
1207 1997 7.807977 ACATAGAACAAGTTGAACAAGTGAT 57.192 32.000 10.54 0.00 0.00 3.06
1250 2040 5.176958 CACTCCTTCGAACGAGTTGTAATTT 59.823 40.000 22.21 1.62 37.23 1.82
1514 2323 8.773033 TTATATTTCTTTACGGAGGGAGTACT 57.227 34.615 0.00 0.00 0.00 2.73
1584 2393 8.038944 GGAACAATAGTACTCCATCTGTAAACA 58.961 37.037 0.00 0.00 0.00 2.83
1606 2427 6.200854 GTGTGTTTTTGGATCATCTTTGGAAC 59.799 38.462 0.00 0.00 0.00 3.62
1662 2484 5.149977 GCATGGTTCGAAAAGAAGAAGAAG 58.850 41.667 0.00 0.00 39.95 2.85
1666 2488 4.097135 TGTTGCATGGTTCGAAAAGAAGAA 59.903 37.500 0.00 0.00 39.95 2.52
1668 2490 3.963665 TGTTGCATGGTTCGAAAAGAAG 58.036 40.909 0.00 0.00 39.95 2.85
1677 2499 0.807496 GGAGCTCTGTTGCATGGTTC 59.193 55.000 14.64 0.00 34.99 3.62
1688 2510 8.442632 TTCTTAATGAATTACATGGAGCTCTG 57.557 34.615 14.64 7.59 39.39 3.35
1701 2523 8.169977 TGCACTCACTTTCTTCTTAATGAATT 57.830 30.769 0.00 0.00 33.71 2.17
1719 2541 2.434185 GATCCGGCGTTGCACTCA 60.434 61.111 6.01 0.00 0.00 3.41
1801 2628 1.006832 ATGCCGATTAGTTGCACGAC 58.993 50.000 0.00 0.00 37.92 4.34
1883 2710 5.076873 ACTTTAGTAGCATTCTGCCCAAAA 58.923 37.500 0.00 0.00 46.52 2.44
1886 2713 3.519510 AGACTTTAGTAGCATTCTGCCCA 59.480 43.478 0.00 0.00 46.52 5.36
1887 2714 4.123506 GAGACTTTAGTAGCATTCTGCCC 58.876 47.826 0.00 0.00 46.52 5.36
1928 2755 5.124457 GCTGCATCCAAAACATTTCTCTCTA 59.876 40.000 0.00 0.00 0.00 2.43
1951 2778 5.423015 TCTCAATTGGATAGACTGTCTTGC 58.577 41.667 16.53 9.60 0.00 4.01
2037 2872 6.189036 AGGAAACTCCAGCTAAAAAGTAGT 57.811 37.500 0.00 0.00 39.61 2.73
2077 2912 6.151312 GCAGATGAATATGAATGAATCCAGCT 59.849 38.462 0.00 0.00 0.00 4.24
2088 2923 5.595133 TGGAAATGCAGCAGATGAATATGAA 59.405 36.000 0.00 0.00 0.00 2.57
2089 2924 5.134661 TGGAAATGCAGCAGATGAATATGA 58.865 37.500 0.00 0.00 0.00 2.15
2090 2925 5.447624 TGGAAATGCAGCAGATGAATATG 57.552 39.130 0.00 0.00 0.00 1.78
2091 2926 5.597182 ACTTGGAAATGCAGCAGATGAATAT 59.403 36.000 0.00 0.00 0.00 1.28
2138 2973 5.858581 CGCCTTTTCTTATCACAGAAAAAGG 59.141 40.000 16.72 16.72 47.00 3.11
2147 2982 1.266891 CGCGTCGCCTTTTCTTATCAC 60.267 52.381 12.44 0.00 0.00 3.06
2151 2986 1.010419 GTCCGCGTCGCCTTTTCTTA 61.010 55.000 12.44 0.00 0.00 2.10
2220 3055 0.593128 GTTGGTGCAGGTGTCATGAC 59.407 55.000 19.27 19.27 0.00 3.06
2258 3093 5.720202 CAGCTCTTGTGGTACATAGTGTTA 58.280 41.667 0.00 0.00 44.52 2.41
2264 3099 3.260632 TGAAGCAGCTCTTGTGGTACATA 59.739 43.478 0.00 0.00 36.19 2.29
2390 3225 3.262420 GTTCTCGAGCTGGCTGAAATTA 58.738 45.455 7.81 0.00 0.00 1.40
2426 3261 1.892819 CTGACCCGGCACTCTGTGAT 61.893 60.000 0.00 0.00 35.23 3.06
2666 3501 1.448308 CTTGTATGCGCATAGACGTCG 59.552 52.381 29.66 12.89 34.88 5.12
2674 3509 2.028420 TCTCTTGCTTGTATGCGCAT 57.972 45.000 28.23 28.23 35.85 4.73
2677 3512 4.346734 ACAATTCTCTTGCTTGTATGCG 57.653 40.909 0.00 0.00 31.62 4.73
2763 3603 7.875327 AGGCTTAAAGTTGTTCAGAGTTTTA 57.125 32.000 0.00 0.00 0.00 1.52
2784 3624 4.802999 CTCATTTCTTTTCTGTGGAAGGC 58.197 43.478 0.00 0.00 32.61 4.35
2786 3626 5.458891 CAGCTCATTTCTTTTCTGTGGAAG 58.541 41.667 0.00 0.00 32.61 3.46
2812 3652 0.249868 GTGCCAGTTCTTTTTGGGGC 60.250 55.000 0.00 0.00 41.70 5.80
2825 3665 1.318158 GGCCTCCAAATCTGTGCCAG 61.318 60.000 0.00 0.00 38.73 4.85
2826 3666 1.304381 GGCCTCCAAATCTGTGCCA 60.304 57.895 0.00 0.00 38.73 4.92
2914 3754 5.005875 GCTAGAAAGCTTTGTTCTATCGTCC 59.994 44.000 18.30 0.00 45.85 4.79
2967 3807 5.525484 TCAGTACTGTATCCCCAACACTAT 58.475 41.667 21.99 0.00 0.00 2.12
2968 3808 4.938028 TCAGTACTGTATCCCCAACACTA 58.062 43.478 21.99 0.00 0.00 2.74
2969 3809 3.786553 TCAGTACTGTATCCCCAACACT 58.213 45.455 21.99 0.00 0.00 3.55
3009 3849 7.453126 TGGATGCCTCCTTTTTCAGTTAATTAA 59.547 33.333 9.61 0.00 42.59 1.40
3024 3864 4.591321 TTTGTATCTTTGGATGCCTCCT 57.409 40.909 9.61 0.00 42.59 3.69
3026 3866 8.854614 AGTATATTTGTATCTTTGGATGCCTC 57.145 34.615 0.00 0.00 34.38 4.70
3045 3885 7.456585 TGCCACACCCTACATTGTATAGTATAT 59.543 37.037 0.00 0.00 0.00 0.86
3088 3928 5.046304 GGCCTGCCAGTGATATCTTAAGATA 60.046 44.000 23.97 23.97 37.45 1.98
3109 3949 8.700439 TTTTCTATACCCTGTTATAAATGGCC 57.300 34.615 0.00 0.00 0.00 5.36
3123 3963 7.283127 TCTCAGTGAATGCATTTTTCTATACCC 59.717 37.037 14.33 0.00 0.00 3.69
3124 3964 8.213518 TCTCAGTGAATGCATTTTTCTATACC 57.786 34.615 14.33 0.00 0.00 2.73
3130 3970 8.530269 AATCTTTCTCAGTGAATGCATTTTTC 57.470 30.769 14.33 2.12 34.24 2.29
3371 4216 5.437060 TGGCAAGTGACTCTAGTTTTCTTT 58.563 37.500 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.