Multiple sequence alignment - TraesCS5D01G114900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G114900 chr5D 100.000 5756 0 0 1 5756 134778340 134784095 0.000000e+00 10630.0
1 TraesCS5D01G114900 chr5D 94.595 481 25 1 1 480 134762243 134762723 0.000000e+00 743.0
2 TraesCS5D01G114900 chr5D 93.789 483 26 4 1 480 428838107 428837626 0.000000e+00 723.0
3 TraesCS5D01G114900 chr5D 95.146 103 5 0 3769 3871 332584395 332584293 4.610000e-36 163.0
4 TraesCS5D01G114900 chr5D 89.000 100 6 5 2163 2261 549872708 549872803 1.010000e-22 119.0
5 TraesCS5D01G114900 chr5B 95.931 1278 34 3 913 2172 146259248 146260525 0.000000e+00 2056.0
6 TraesCS5D01G114900 chr5B 90.921 1498 78 16 2315 3772 146262950 146264429 0.000000e+00 1960.0
7 TraesCS5D01G114900 chr5B 98.182 935 13 4 3879 4813 146264479 146265409 0.000000e+00 1629.0
8 TraesCS5D01G114900 chr5B 95.321 919 39 4 2 919 146256596 146257511 0.000000e+00 1456.0
9 TraesCS5D01G114900 chr5B 97.039 743 21 1 5015 5756 146265406 146266148 0.000000e+00 1249.0
10 TraesCS5D01G114900 chr5B 91.553 438 34 3 483 919 47710390 47710825 8.250000e-168 601.0
11 TraesCS5D01G114900 chr5B 97.000 100 3 0 3771 3870 295217264 295217363 9.920000e-38 169.0
12 TraesCS5D01G114900 chr5A 94.675 1277 44 5 913 2167 158911540 158912814 0.000000e+00 1960.0
13 TraesCS5D01G114900 chr5A 96.010 1203 44 2 3879 5081 158914404 158915602 0.000000e+00 1953.0
14 TraesCS5D01G114900 chr5A 96.450 845 21 7 2952 3793 158913546 158914384 0.000000e+00 1386.0
15 TraesCS5D01G114900 chr5A 96.322 734 26 1 2259 2992 158912813 158913545 0.000000e+00 1205.0
16 TraesCS5D01G114900 chr5A 95.900 439 18 0 5318 5756 158929169 158929607 0.000000e+00 712.0
17 TraesCS5D01G114900 chr5A 92.982 114 7 1 3759 3871 258060803 258060690 1.280000e-36 165.0
18 TraesCS5D01G114900 chr5A 91.011 89 3 1 5087 5170 158915650 158915738 1.310000e-21 115.0
19 TraesCS5D01G114900 chr1D 94.387 481 25 2 1 480 80945863 80946342 0.000000e+00 737.0
20 TraesCS5D01G114900 chr1D 94.179 481 25 3 1 480 92882534 92882056 0.000000e+00 730.0
21 TraesCS5D01G114900 chr1D 93.763 481 28 2 1 480 451323711 451324190 0.000000e+00 721.0
22 TraesCS5D01G114900 chr1D 92.727 440 30 2 481 919 263076013 263075575 8.140000e-178 634.0
23 TraesCS5D01G114900 chr1D 96.939 98 3 0 3771 3868 490538212 490538115 1.280000e-36 165.0
24 TraesCS5D01G114900 chr1D 96.907 97 3 0 3771 3867 225936948 225936852 4.610000e-36 163.0
25 TraesCS5D01G114900 chr1D 96.907 97 3 0 3771 3867 225944038 225943942 4.610000e-36 163.0
26 TraesCS5D01G114900 chr1D 95.918 98 4 0 3770 3867 12177779 12177682 5.970000e-35 159.0
27 TraesCS5D01G114900 chr1D 94.286 105 4 1 3765 3869 135930947 135931049 5.970000e-35 159.0
28 TraesCS5D01G114900 chr1D 95.876 97 4 0 3771 3867 209519496 209519400 2.150000e-34 158.0
29 TraesCS5D01G114900 chr1D 92.035 113 7 2 3769 3881 420554540 420554650 2.150000e-34 158.0
30 TraesCS5D01G114900 chr7D 94.538 476 24 2 1 475 111484410 111483936 0.000000e+00 734.0
31 TraesCS5D01G114900 chr7D 91.818 440 34 2 481 919 33716282 33715844 3.810000e-171 612.0
32 TraesCS5D01G114900 chr7D 94.340 106 5 1 3770 3875 190163216 190163112 1.660000e-35 161.0
33 TraesCS5D01G114900 chr7D 89.655 116 6 2 2150 2260 506679419 506679533 6.010000e-30 143.0
34 TraesCS5D01G114900 chr7D 92.000 100 2 2 2166 2261 604292593 604292690 1.010000e-27 135.0
35 TraesCS5D01G114900 chr7D 87.629 97 10 2 2166 2260 28023684 28023780 1.700000e-20 111.0
36 TraesCS5D01G114900 chrUn 94.179 481 27 1 1 480 246224840 246225320 0.000000e+00 732.0
37 TraesCS5D01G114900 chrUn 93.776 482 29 1 1 481 11042988 11042507 0.000000e+00 723.0
38 TraesCS5D01G114900 chrUn 94.898 98 5 0 3770 3867 362465802 362465899 2.780000e-33 154.0
39 TraesCS5D01G114900 chrUn 94.000 100 6 0 3771 3870 71312953 71312854 9.990000e-33 152.0
40 TraesCS5D01G114900 chrUn 93.939 99 6 0 3771 3869 23574873 23574971 3.590000e-32 150.0
41 TraesCS5D01G114900 chrUn 92.381 105 7 1 3769 3872 45996666 45996770 1.290000e-31 148.0
42 TraesCS5D01G114900 chrUn 93.814 97 6 0 3771 3867 2713993 2713897 4.650000e-31 147.0
43 TraesCS5D01G114900 chrUn 93.814 97 6 0 3771 3867 2717595 2717499 4.650000e-31 147.0
44 TraesCS5D01G114900 chrUn 93.814 97 6 0 3771 3867 2780473 2780377 4.650000e-31 147.0
45 TraesCS5D01G114900 chrUn 92.308 104 7 1 3770 3872 83375537 83375434 4.650000e-31 147.0
46 TraesCS5D01G114900 chrUn 93.814 97 6 0 3771 3867 477580553 477580649 4.650000e-31 147.0
47 TraesCS5D01G114900 chrUn 92.233 103 7 1 3771 3873 27746565 27746666 1.670000e-30 145.0
48 TraesCS5D01G114900 chrUn 91.346 104 9 0 3771 3874 347977189 347977086 6.010000e-30 143.0
49 TraesCS5D01G114900 chrUn 88.421 95 6 3 2166 2260 46240431 46240342 6.100000e-20 110.0
50 TraesCS5D01G114900 chrUn 87.629 97 2 2 2166 2262 101630800 101630886 2.840000e-18 104.0
51 TraesCS5D01G114900 chrUn 85.263 95 12 2 2166 2260 26701916 26701824 4.750000e-16 97.1
52 TraesCS5D01G114900 chrUn 85.294 102 5 4 2166 2267 202630521 202630612 4.750000e-16 97.1
53 TraesCS5D01G114900 chrUn 98.148 54 1 0 2166 2219 35125963 35125910 1.710000e-15 95.3
54 TraesCS5D01G114900 chrUn 86.316 95 3 4 2166 2260 101630884 101630800 1.710000e-15 95.3
55 TraesCS5D01G114900 chrUn 84.466 103 8 4 2166 2260 205782213 205782111 1.710000e-15 95.3
56 TraesCS5D01G114900 chrUn 85.714 98 4 2 2163 2260 301349939 301350026 1.710000e-15 95.3
57 TraesCS5D01G114900 chrUn 85.567 97 4 4 2166 2262 8111534 8111448 6.140000e-15 93.5
58 TraesCS5D01G114900 chrUn 84.112 107 5 4 2166 2272 77893463 77893557 6.140000e-15 93.5
59 TraesCS5D01G114900 chrUn 94.828 58 3 0 2162 2219 349323557 349323614 2.210000e-14 91.6
60 TraesCS5D01G114900 chrUn 98.039 51 1 0 2169 2219 110322469 110322419 7.940000e-14 89.8
61 TraesCS5D01G114900 chrUn 83.333 102 6 2 2163 2263 28955524 28955433 3.700000e-12 84.2
62 TraesCS5D01G114900 chrUn 83.838 99 3 6 2166 2263 35125880 35125966 1.330000e-11 82.4
63 TraesCS5D01G114900 chrUn 83.158 95 10 2 2166 2260 249173893 249173805 1.330000e-11 82.4
64 TraesCS5D01G114900 chrUn 83.158 95 10 2 2166 2260 304222768 304222680 1.330000e-11 82.4
65 TraesCS5D01G114900 chr6A 92.694 438 28 4 483 919 50120287 50120721 3.790000e-176 628.0
66 TraesCS5D01G114900 chr6A 91.358 81 3 4 2184 2264 201047701 201047777 2.190000e-19 108.0
67 TraesCS5D01G114900 chr1B 86.477 562 66 7 2260 2816 334892673 334892117 4.930000e-170 608.0
68 TraesCS5D01G114900 chr1B 94.495 109 4 2 3764 3871 359902041 359902148 3.570000e-37 167.0
69 TraesCS5D01G114900 chr4B 91.917 433 33 2 488 919 650774075 650773644 6.380000e-169 604.0
70 TraesCS5D01G114900 chr4B 93.519 108 6 1 3769 3876 646855994 646855888 5.970000e-35 159.0
71 TraesCS5D01G114900 chr4B 91.837 98 6 1 2166 2263 23661544 23661449 1.010000e-27 135.0
72 TraesCS5D01G114900 chr4B 91.837 98 5 1 2166 2260 11736926 11736829 3.620000e-27 134.0
73 TraesCS5D01G114900 chr4B 91.579 95 5 3 2166 2260 135215372 135215463 1.680000e-25 128.0
74 TraesCS5D01G114900 chr6D 91.553 438 35 2 483 919 142983746 142984182 2.290000e-168 603.0
75 TraesCS5D01G114900 chr6D 95.918 98 4 0 3771 3868 200398810 200398713 5.970000e-35 159.0
76 TraesCS5D01G114900 chr6D 95.960 99 2 2 3770 3868 419276556 419276460 5.970000e-35 159.0
77 TraesCS5D01G114900 chr6D 94.949 99 5 0 3771 3869 68866147 68866245 7.720000e-34 156.0
78 TraesCS5D01G114900 chr6D 94.949 99 5 0 3771 3869 91559534 91559632 7.720000e-34 156.0
79 TraesCS5D01G114900 chr6D 94.059 101 6 0 3770 3870 18672182 18672082 2.780000e-33 154.0
80 TraesCS5D01G114900 chr6D 94.898 98 5 0 3771 3868 319691668 319691571 2.780000e-33 154.0
81 TraesCS5D01G114900 chr6D 94.059 101 6 0 3769 3869 355436602 355436702 2.780000e-33 154.0
82 TraesCS5D01G114900 chr6D 94.059 101 6 0 3771 3871 368755098 368755198 2.780000e-33 154.0
83 TraesCS5D01G114900 chr6D 94.118 102 5 1 3771 3871 374820207 374820308 2.780000e-33 154.0
84 TraesCS5D01G114900 chr6D 94.059 101 4 2 3771 3871 457543737 457543835 9.990000e-33 152.0
85 TraesCS5D01G114900 chr6D 89.916 119 8 4 3771 3889 16366364 16366250 3.590000e-32 150.0
86 TraesCS5D01G114900 chr6D 89.109 101 8 1 2166 2263 410721315 410721215 7.830000e-24 122.0
87 TraesCS5D01G114900 chr6D 88.776 98 6 3 2163 2260 245495101 245495193 1.310000e-21 115.0
88 TraesCS5D01G114900 chr6D 88.421 95 6 3 2166 2260 245495193 245495104 6.100000e-20 110.0
89 TraesCS5D01G114900 chr6D 86.869 99 8 4 2166 2260 410721218 410721315 7.890000e-19 106.0
90 TraesCS5D01G114900 chr6D 87.097 93 8 2 2176 2264 648584 648676 1.020000e-17 102.0
91 TraesCS5D01G114900 chr6D 84.615 91 7 5 2183 2269 58433835 58433748 3.700000e-12 84.2
92 TraesCS5D01G114900 chr7B 91.324 438 35 3 483 919 156758508 156758073 3.840000e-166 595.0
93 TraesCS5D01G114900 chr7B 91.919 99 7 1 2166 2264 64413103 64413006 2.800000e-28 137.0
94 TraesCS5D01G114900 chr7B 91.262 103 4 3 2169 2270 559534968 559534870 1.010000e-27 135.0
95 TraesCS5D01G114900 chr3D 90.724 442 35 5 482 919 36537807 36538246 8.310000e-163 584.0
96 TraesCS5D01G114900 chr3D 94.286 105 6 0 3766 3870 448433709 448433605 1.660000e-35 161.0
97 TraesCS5D01G114900 chr3D 94.737 95 4 1 2166 2260 424659580 424659673 4.650000e-31 147.0
98 TraesCS5D01G114900 chr3D 88.991 109 5 5 2158 2263 424659681 424659577 1.680000e-25 128.0
99 TraesCS5D01G114900 chr3D 87.500 104 8 4 2166 2265 569116163 569116061 1.310000e-21 115.0
100 TraesCS5D01G114900 chr2D 97.980 99 2 0 3771 3869 445894980 445894882 7.670000e-39 172.0
101 TraesCS5D01G114900 chr2D 92.632 95 6 1 2166 2260 376700734 376700827 1.010000e-27 135.0
102 TraesCS5D01G114900 chr2A 96.226 106 3 1 3771 3876 68155824 68155928 7.670000e-39 172.0
103 TraesCS5D01G114900 chr2A 93.069 101 3 1 2164 2260 746253395 746253495 1.670000e-30 145.0
104 TraesCS5D01G114900 chr7A 95.238 105 5 0 3764 3868 61816025 61815921 3.570000e-37 167.0
105 TraesCS5D01G114900 chr7A 95.238 105 5 0 3769 3873 73807271 73807167 3.570000e-37 167.0
106 TraesCS5D01G114900 chr4A 96.117 103 3 1 3765 3867 606584343 606584242 3.570000e-37 167.0
107 TraesCS5D01G114900 chr4A 89.423 104 9 2 2163 2266 39520556 39520455 4.680000e-26 130.0
108 TraesCS5D01G114900 chr1A 95.192 104 5 0 3769 3872 49276252 49276355 1.280000e-36 165.0
109 TraesCS5D01G114900 chr1A 87.879 99 7 4 2166 2263 321396830 321396736 1.700000e-20 111.0
110 TraesCS5D01G114900 chr4D 96.907 97 3 0 3771 3867 12354698 12354794 4.610000e-36 163.0
111 TraesCS5D01G114900 chr4D 95.960 99 4 0 3770 3868 26254049 26253951 1.660000e-35 161.0
112 TraesCS5D01G114900 chr4D 95.098 102 5 0 3771 3872 205963442 205963543 1.660000e-35 161.0
113 TraesCS5D01G114900 chr4D 94.340 106 4 2 3771 3876 490940140 490940037 1.660000e-35 161.0
114 TraesCS5D01G114900 chr4D 95.146 103 4 1 3766 3868 509117703 509117804 1.660000e-35 161.0
115 TraesCS5D01G114900 chr4D 95.000 100 5 0 3770 3869 110081032 110080933 2.150000e-34 158.0
116 TraesCS5D01G114900 chr4D 92.727 110 7 1 3758 3867 482704102 482704210 2.150000e-34 158.0
117 TraesCS5D01G114900 chr4D 91.579 95 6 2 2166 2260 451274314 451274406 4.680000e-26 130.0
118 TraesCS5D01G114900 chr3A 93.000 100 5 2 2163 2260 80090960 80090861 1.670000e-30 145.0
119 TraesCS5D01G114900 chr3A 93.684 95 5 1 2166 2260 564342552 564342459 2.160000e-29 141.0
120 TraesCS5D01G114900 chr6B 87.619 105 13 0 2166 2270 351226131 351226027 7.830000e-24 122.0
121 TraesCS5D01G114900 chr6B 89.000 100 7 4 2163 2260 553058984 553059081 2.820000e-23 121.0
122 TraesCS5D01G114900 chr2B 100.000 28 0 0 3896 3923 235070404 235070377 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G114900 chr5D 134778340 134784095 5755 False 10630.0 10630 100.0000 1 5756 1 chr5D.!!$F2 5755
1 TraesCS5D01G114900 chr5B 146256596 146266148 9552 False 1670.0 2056 95.4788 2 5756 5 chr5B.!!$F3 5754
2 TraesCS5D01G114900 chr5A 158911540 158915738 4198 False 1323.8 1960 94.8936 913 5170 5 chr5A.!!$F2 4257
3 TraesCS5D01G114900 chr1B 334892117 334892673 556 True 608.0 608 86.4770 2260 2816 1 chr1B.!!$R1 556

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
536 537 0.184211 CCATGCCATCATCCTCACCA 59.816 55.0 0.00 0.00 0.0 4.17 F
705 706 0.674581 TCTCTTGCCGCCATCACTTG 60.675 55.0 0.00 0.00 0.0 3.16 F
1932 3701 0.107066 ATGGAGTGCATGCGGAATCA 60.107 50.0 14.09 8.02 0.0 2.57 F
1970 3739 0.725784 CGAAATGTGGTTGCTCGTGC 60.726 55.0 1.71 1.71 40.2 5.34 F
3317 7536 0.179043 TTGGCGGTGCAAGTAACTGA 60.179 50.0 0.00 0.00 0.0 3.41 F
3784 8031 0.335361 ATGTGTACTCCCTCCGTCCT 59.665 55.0 0.00 0.00 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1846 3613 1.035139 AACAAAGGAGCAAGCTGTGG 58.965 50.000 0.00 0.00 0.00 4.17 R
2518 6674 1.976132 GCAGGTCAGCATAGAGGCCA 61.976 60.000 5.01 0.00 0.00 5.36 R
2844 7002 0.704076 ACTGCCCTTGCCCTTTCATA 59.296 50.000 0.00 0.00 36.33 2.15 R
3846 8093 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40 R
4602 8849 0.404040 TACAAGACCAAAGGGCCAGG 59.596 55.000 6.18 7.28 37.90 4.45 R
5571 10066 1.000274 CCTACTGTTTGGCAAAGTGGC 60.000 52.381 13.94 1.92 44.03 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 5.274015 CTCCTCCTCCCCTCCTTTATATAC 58.726 50.000 0.00 0.00 0.00 1.47
96 97 5.410067 CCAAAGACACAACAGACAATTGTT 58.590 37.500 13.36 0.00 41.77 2.83
108 109 2.724174 GACAATTGTTTTAGCCGTGTGC 59.276 45.455 13.36 0.00 41.71 4.57
189 190 0.582005 GCGCCGGTAACTTCATCATC 59.418 55.000 1.90 0.00 0.00 2.92
191 192 2.483876 CGCCGGTAACTTCATCATCAT 58.516 47.619 1.90 0.00 0.00 2.45
192 193 2.476619 CGCCGGTAACTTCATCATCATC 59.523 50.000 1.90 0.00 0.00 2.92
195 196 3.736252 CCGGTAACTTCATCATCATCGTC 59.264 47.826 0.00 0.00 0.00 4.20
236 237 2.104170 GAACTCTCCCTCGTCCTCAAT 58.896 52.381 0.00 0.00 0.00 2.57
248 249 3.118629 TCGTCCTCAATTGGATCAAGAGG 60.119 47.826 5.42 3.18 45.64 3.69
263 264 3.471244 GAGGTCGAGGGCGTCATCG 62.471 68.421 19.20 19.20 46.94 3.84
277 278 1.008875 TCATCGAGCTGAACGTGTGC 61.009 55.000 0.00 0.00 0.00 4.57
290 291 1.672356 GTGTGCTGAATGCGGAGGT 60.672 57.895 0.00 0.00 46.63 3.85
292 293 2.747460 TGCTGAATGCGGAGGTGC 60.747 61.111 0.00 0.00 46.63 5.01
444 445 2.414058 AGATAGATCTTGCGTGCTCG 57.586 50.000 0.00 3.31 35.26 5.03
452 453 1.270274 TCTTGCGTGCTCGTAGGTAAA 59.730 47.619 10.18 0.00 39.49 2.01
501 502 3.151022 CACCCTCCTCTCCTCGGC 61.151 72.222 0.00 0.00 0.00 5.54
536 537 0.184211 CCATGCCATCATCCTCACCA 59.816 55.000 0.00 0.00 0.00 4.17
636 637 3.255149 TCTTTTACGTCTTTCTCGCCTCT 59.745 43.478 0.00 0.00 0.00 3.69
645 646 3.769844 TCTTTCTCGCCTCTATTTGGTCT 59.230 43.478 0.00 0.00 0.00 3.85
674 675 1.053424 TGGAGTAGGCAACCGAGTTT 58.947 50.000 0.00 0.00 37.17 2.66
705 706 0.674581 TCTCTTGCCGCCATCACTTG 60.675 55.000 0.00 0.00 0.00 3.16
766 767 1.195674 GCGTTTGTTGCTCTCCTCTTC 59.804 52.381 0.00 0.00 0.00 2.87
854 855 9.225436 GTAAATGGTCTCTCTTTCTTGATCTTT 57.775 33.333 0.00 0.00 0.00 2.52
855 856 8.703378 AAATGGTCTCTCTTTCTTGATCTTTT 57.297 30.769 0.00 0.00 0.00 2.27
898 899 7.060421 TCCTCTCCTTGAAATAAGTTTTGTGT 58.940 34.615 0.00 0.00 0.00 3.72
942 2688 2.494073 CTCTAAGAAACGCTGTCTCCCT 59.506 50.000 0.00 0.00 0.00 4.20
1153 2920 2.123854 AGACGGCGCTGGAGGATA 60.124 61.111 22.44 0.00 0.00 2.59
1932 3701 0.107066 ATGGAGTGCATGCGGAATCA 60.107 50.000 14.09 8.02 0.00 2.57
1970 3739 0.725784 CGAAATGTGGTTGCTCGTGC 60.726 55.000 1.71 1.71 40.20 5.34
1985 3754 1.202639 TCGTGCGAGGAATTGGCATAT 60.203 47.619 0.00 0.00 42.69 1.78
1986 3755 1.069703 CGTGCGAGGAATTGGCATATG 60.070 52.381 0.00 0.00 42.69 1.78
2019 3788 3.643199 TGTTGCACCTATTGGCATAGA 57.357 42.857 0.00 0.00 40.17 1.98
2051 3820 5.006386 GGGAGTTTGCCATATAAGATCAGG 58.994 45.833 0.00 0.00 0.00 3.86
2144 3913 1.608109 TGACATGAATTGCGTGCACTT 59.392 42.857 16.19 1.41 36.99 3.16
2172 3941 5.800653 AGGATTACTTGGGTATTACTCCCT 58.199 41.667 2.65 0.00 44.84 4.20
2173 3942 5.845065 AGGATTACTTGGGTATTACTCCCTC 59.155 44.000 2.65 0.00 44.84 4.30
2174 3943 5.012871 GGATTACTTGGGTATTACTCCCTCC 59.987 48.000 2.65 0.00 44.84 4.30
2175 3944 2.395619 ACTTGGGTATTACTCCCTCCG 58.604 52.381 2.65 0.00 44.84 4.63
2176 3945 2.292719 ACTTGGGTATTACTCCCTCCGT 60.293 50.000 2.65 0.00 44.84 4.69
2177 3946 3.052642 ACTTGGGTATTACTCCCTCCGTA 60.053 47.826 2.65 0.00 44.84 4.02
2178 3947 3.686227 TGGGTATTACTCCCTCCGTAA 57.314 47.619 2.65 0.00 44.84 3.18
2179 3948 3.992999 TGGGTATTACTCCCTCCGTAAA 58.007 45.455 2.65 0.00 44.84 2.01
2180 3949 3.962718 TGGGTATTACTCCCTCCGTAAAG 59.037 47.826 2.65 0.00 44.84 1.85
2181 3950 4.218312 GGGTATTACTCCCTCCGTAAAGA 58.782 47.826 0.00 0.00 41.58 2.52
2182 3951 4.651045 GGGTATTACTCCCTCCGTAAAGAA 59.349 45.833 0.00 0.00 41.58 2.52
2183 3952 5.129320 GGGTATTACTCCCTCCGTAAAGAAA 59.871 44.000 0.00 0.00 41.58 2.52
2184 3953 6.183361 GGGTATTACTCCCTCCGTAAAGAAAT 60.183 42.308 0.00 0.00 41.58 2.17
2185 3954 7.015584 GGGTATTACTCCCTCCGTAAAGAAATA 59.984 40.741 0.00 0.00 41.58 1.40
2186 3955 8.591940 GGTATTACTCCCTCCGTAAAGAAATAT 58.408 37.037 0.00 0.00 31.36 1.28
2190 3959 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
2191 3960 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
2192 3961 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
2193 3962 6.325545 TCCCTCCGTAAAGAAATATAAGAGCA 59.674 38.462 0.00 0.00 0.00 4.26
2194 3963 7.016268 TCCCTCCGTAAAGAAATATAAGAGCAT 59.984 37.037 0.00 0.00 0.00 3.79
2195 3964 7.661847 CCCTCCGTAAAGAAATATAAGAGCATT 59.338 37.037 0.00 0.00 0.00 3.56
2196 3965 9.057089 CCTCCGTAAAGAAATATAAGAGCATTT 57.943 33.333 0.00 0.00 0.00 2.32
2236 4005 9.532494 AGTGATCTATAGTGATCTAAATGCTCT 57.468 33.333 0.00 0.00 42.30 4.09
2255 4024 9.566432 AATGCTCTTATATTTCTTTACAGAGGG 57.434 33.333 0.00 0.00 0.00 4.30
2256 4025 8.319057 TGCTCTTATATTTCTTTACAGAGGGA 57.681 34.615 0.00 0.00 0.00 4.20
2257 4026 8.424918 TGCTCTTATATTTCTTTACAGAGGGAG 58.575 37.037 0.00 0.00 0.00 4.30
2359 6515 3.210232 AGCATAGCAGCATGATCTGTT 57.790 42.857 0.00 0.00 39.69 3.16
2518 6674 2.431782 GCATTCATAGTGTTTGCCCCAT 59.568 45.455 0.00 0.00 0.00 4.00
2566 6722 3.825585 TGCACATGCTTGGAATTGAGTTA 59.174 39.130 5.31 0.00 42.66 2.24
2597 6753 3.163594 GTTGAAGTTCGAATTCGCATGG 58.836 45.455 22.90 0.00 39.60 3.66
2655 6812 4.728772 AGGTCACTTGGAATTGATTGTCA 58.271 39.130 0.00 0.00 0.00 3.58
2755 6912 7.879070 TCATAGCCATTTGAAAATCTGATAGC 58.121 34.615 0.00 0.00 0.00 2.97
2756 6913 7.503230 TCATAGCCATTTGAAAATCTGATAGCA 59.497 33.333 0.00 0.00 0.00 3.49
2757 6914 6.726490 AGCCATTTGAAAATCTGATAGCAT 57.274 33.333 0.00 0.00 0.00 3.79
2758 6915 6.746120 AGCCATTTGAAAATCTGATAGCATC 58.254 36.000 0.00 0.00 0.00 3.91
2935 7093 1.135960 TCACCATTCATATCGCCCCA 58.864 50.000 0.00 0.00 0.00 4.96
3170 7368 4.399219 TGGGATGACTAGGACTTCTATCG 58.601 47.826 0.00 0.00 0.00 2.92
3317 7536 0.179043 TTGGCGGTGCAAGTAACTGA 60.179 50.000 0.00 0.00 0.00 3.41
3323 7542 4.320641 GGCGGTGCAAGTAACTGATTTTTA 60.321 41.667 0.00 0.00 0.00 1.52
3460 7687 4.265124 TGAAGAGAACCCTCCCTTACCATA 60.265 45.833 0.00 0.00 40.30 2.74
3508 7745 9.169592 GGTTATTTCCTGTACATTGCTACTTAA 57.830 33.333 0.00 0.00 0.00 1.85
3743 7981 8.641499 TTTGGACATTGACATTGTCTTAAAAC 57.359 30.769 22.97 10.88 42.48 2.43
3782 8029 3.429960 GGTTAATGTGTACTCCCTCCGTC 60.430 52.174 0.00 0.00 0.00 4.79
3784 8031 0.335361 ATGTGTACTCCCTCCGTCCT 59.665 55.000 0.00 0.00 0.00 3.85
3793 8040 4.359996 ACTCCCTCCGTCCTAAAATAAGT 58.640 43.478 0.00 0.00 0.00 2.24
3796 8043 4.161001 TCCCTCCGTCCTAAAATAAGTGTC 59.839 45.833 0.00 0.00 0.00 3.67
3797 8044 4.161754 CCCTCCGTCCTAAAATAAGTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
3798 8045 5.349809 CCTCCGTCCTAAAATAAGTGTCTC 58.650 45.833 0.00 0.00 0.00 3.36
3799 8046 5.105473 CCTCCGTCCTAAAATAAGTGTCTCA 60.105 44.000 0.00 0.00 0.00 3.27
3800 8047 6.349243 TCCGTCCTAAAATAAGTGTCTCAA 57.651 37.500 0.00 0.00 0.00 3.02
3801 8048 6.161381 TCCGTCCTAAAATAAGTGTCTCAAC 58.839 40.000 0.00 0.00 0.00 3.18
3802 8049 5.350640 CCGTCCTAAAATAAGTGTCTCAACC 59.649 44.000 0.00 0.00 0.00 3.77
3806 8053 9.498176 GTCCTAAAATAAGTGTCTCAACCTTAA 57.502 33.333 0.00 0.00 0.00 1.85
3815 8062 8.747538 AAGTGTCTCAACCTTAATACAACTTT 57.252 30.769 0.00 0.00 0.00 2.66
3816 8063 8.154649 AGTGTCTCAACCTTAATACAACTTTG 57.845 34.615 0.00 0.00 0.00 2.77
3817 8064 7.773690 AGTGTCTCAACCTTAATACAACTTTGT 59.226 33.333 0.00 0.00 44.86 2.83
3818 8065 9.048446 GTGTCTCAACCTTAATACAACTTTGTA 57.952 33.333 4.34 4.34 46.55 2.41
3819 8066 9.048446 TGTCTCAACCTTAATACAACTTTGTAC 57.952 33.333 3.95 0.00 45.47 2.90
3820 8067 9.269453 GTCTCAACCTTAATACAACTTTGTACT 57.731 33.333 3.95 0.00 45.47 2.73
3844 8091 9.310716 ACTAAAGTTAGTACAAAGTTGAGACAC 57.689 33.333 1.81 0.00 41.92 3.67
3845 8092 9.530633 CTAAAGTTAGTACAAAGTTGAGACACT 57.469 33.333 0.00 0.00 0.00 3.55
3846 8093 8.788325 AAAGTTAGTACAAAGTTGAGACACTT 57.212 30.769 0.00 0.98 38.74 3.16
3847 8094 9.880157 AAAGTTAGTACAAAGTTGAGACACTTA 57.120 29.630 0.00 0.00 35.87 2.24
3853 8100 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
3854 8101 6.805713 ACAAAGTTGAGACACTTATTTTGGG 58.194 36.000 0.00 0.00 35.87 4.12
3855 8102 6.605594 ACAAAGTTGAGACACTTATTTTGGGA 59.394 34.615 0.00 0.00 35.87 4.37
3856 8103 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
3857 8104 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
3858 8105 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
3859 8106 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
3860 8107 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
3861 8108 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
3862 8109 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
3863 8110 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
3864 8111 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
3865 8112 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
3866 8113 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
3867 8114 1.961133 TTTTGGGACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
3868 8115 2.852714 TTTGGGACGGAGGGAGTATA 57.147 50.000 0.00 0.00 0.00 1.47
3869 8116 3.339713 TTTGGGACGGAGGGAGTATAT 57.660 47.619 0.00 0.00 0.00 0.86
3870 8117 4.474303 TTTGGGACGGAGGGAGTATATA 57.526 45.455 0.00 0.00 0.00 0.86
3871 8118 4.687262 TTGGGACGGAGGGAGTATATAT 57.313 45.455 0.00 0.00 0.00 0.86
3872 8119 3.977312 TGGGACGGAGGGAGTATATATG 58.023 50.000 0.00 0.00 0.00 1.78
3873 8120 3.594685 TGGGACGGAGGGAGTATATATGA 59.405 47.826 0.00 0.00 0.00 2.15
3874 8121 4.232122 TGGGACGGAGGGAGTATATATGAT 59.768 45.833 0.00 0.00 0.00 2.45
3875 8122 5.434044 TGGGACGGAGGGAGTATATATGATA 59.566 44.000 0.00 0.00 0.00 2.15
3876 8123 5.769162 GGGACGGAGGGAGTATATATGATAC 59.231 48.000 0.00 0.00 0.00 2.24
3877 8124 6.410621 GGGACGGAGGGAGTATATATGATACT 60.411 46.154 0.00 2.60 37.53 2.12
4082 8329 1.000843 TGACGACATTGGTGGAGTGAG 59.999 52.381 0.00 0.00 0.00 3.51
4173 8420 5.304101 TGCTACATTTCTTGAACCACCATTT 59.696 36.000 0.00 0.00 0.00 2.32
4816 9264 3.625745 CCGTTAAGGGCAGTCTTGT 57.374 52.632 0.36 0.00 35.97 3.16
4817 9265 2.754946 CCGTTAAGGGCAGTCTTGTA 57.245 50.000 0.36 0.00 35.97 2.41
4818 9266 3.048337 CCGTTAAGGGCAGTCTTGTAA 57.952 47.619 0.36 0.00 35.97 2.41
4819 9267 3.404899 CCGTTAAGGGCAGTCTTGTAAA 58.595 45.455 0.36 0.00 35.97 2.01
4820 9268 3.816523 CCGTTAAGGGCAGTCTTGTAAAA 59.183 43.478 0.36 0.00 35.97 1.52
4821 9269 4.319984 CCGTTAAGGGCAGTCTTGTAAAAC 60.320 45.833 0.36 0.00 35.97 2.43
4822 9270 4.514066 CGTTAAGGGCAGTCTTGTAAAACT 59.486 41.667 0.00 0.00 0.00 2.66
4823 9271 5.008316 CGTTAAGGGCAGTCTTGTAAAACTT 59.992 40.000 0.00 0.00 0.00 2.66
4824 9272 6.459161 CGTTAAGGGCAGTCTTGTAAAACTTT 60.459 38.462 0.00 0.00 0.00 2.66
4825 9273 4.918810 AGGGCAGTCTTGTAAAACTTTG 57.081 40.909 0.00 0.00 0.00 2.77
4826 9274 3.068165 AGGGCAGTCTTGTAAAACTTTGC 59.932 43.478 0.00 0.00 0.00 3.68
4827 9275 3.181480 GGGCAGTCTTGTAAAACTTTGCA 60.181 43.478 0.00 0.00 0.00 4.08
4828 9276 4.429108 GGCAGTCTTGTAAAACTTTGCAA 58.571 39.130 0.00 0.00 39.79 4.08
4829 9277 4.267690 GGCAGTCTTGTAAAACTTTGCAAC 59.732 41.667 0.00 0.00 37.74 4.17
4830 9278 5.102313 GCAGTCTTGTAAAACTTTGCAACT 58.898 37.500 0.00 0.00 37.74 3.16
4831 9279 5.576774 GCAGTCTTGTAAAACTTTGCAACTT 59.423 36.000 0.00 0.00 37.74 2.66
4832 9280 6.237569 GCAGTCTTGTAAAACTTTGCAACTTC 60.238 38.462 0.00 0.00 37.74 3.01
4833 9281 6.253512 CAGTCTTGTAAAACTTTGCAACTTCC 59.746 38.462 0.00 0.00 37.74 3.46
4834 9282 6.152831 AGTCTTGTAAAACTTTGCAACTTCCT 59.847 34.615 0.00 0.00 37.74 3.36
4835 9283 6.253512 GTCTTGTAAAACTTTGCAACTTCCTG 59.746 38.462 0.00 0.00 37.74 3.86
4836 9284 5.652994 TGTAAAACTTTGCAACTTCCTGT 57.347 34.783 0.00 0.00 29.82 4.00
4837 9285 5.406649 TGTAAAACTTTGCAACTTCCTGTG 58.593 37.500 0.00 0.00 29.82 3.66
4838 9286 2.584492 AACTTTGCAACTTCCTGTGC 57.416 45.000 0.00 0.00 0.00 4.57
4839 9287 1.473258 ACTTTGCAACTTCCTGTGCA 58.527 45.000 0.00 0.00 33.34 4.57
4840 9288 1.824230 ACTTTGCAACTTCCTGTGCAA 59.176 42.857 0.00 6.96 39.24 4.08
4841 9289 2.159198 ACTTTGCAACTTCCTGTGCAAG 60.159 45.455 10.57 8.19 40.68 4.01
4842 9290 1.473258 TTGCAACTTCCTGTGCAAGT 58.527 45.000 6.96 0.00 37.58 3.16
4843 9291 1.024271 TGCAACTTCCTGTGCAAGTC 58.976 50.000 0.00 0.00 32.71 3.01
4844 9292 1.024271 GCAACTTCCTGTGCAAGTCA 58.976 50.000 0.00 0.00 32.71 3.41
4845 9293 1.610522 GCAACTTCCTGTGCAAGTCAT 59.389 47.619 0.00 0.00 32.71 3.06
4846 9294 2.351157 GCAACTTCCTGTGCAAGTCATC 60.351 50.000 0.00 0.00 32.71 2.92
4847 9295 3.144506 CAACTTCCTGTGCAAGTCATCT 58.855 45.455 0.00 0.00 32.71 2.90
4848 9296 2.775890 ACTTCCTGTGCAAGTCATCTG 58.224 47.619 0.00 0.00 27.00 2.90
4849 9297 2.369860 ACTTCCTGTGCAAGTCATCTGA 59.630 45.455 0.00 0.00 27.00 3.27
4850 9298 3.008813 ACTTCCTGTGCAAGTCATCTGAT 59.991 43.478 0.00 0.00 27.00 2.90
4851 9299 4.223700 ACTTCCTGTGCAAGTCATCTGATA 59.776 41.667 0.00 0.00 27.00 2.15
4852 9300 5.104610 ACTTCCTGTGCAAGTCATCTGATAT 60.105 40.000 0.00 0.00 27.00 1.63
4853 9301 5.363562 TCCTGTGCAAGTCATCTGATATT 57.636 39.130 0.00 0.00 0.00 1.28
4854 9302 5.121105 TCCTGTGCAAGTCATCTGATATTG 58.879 41.667 0.00 0.00 0.00 1.90
4855 9303 5.104817 TCCTGTGCAAGTCATCTGATATTGA 60.105 40.000 11.43 0.00 0.00 2.57
4856 9304 5.587443 CCTGTGCAAGTCATCTGATATTGAA 59.413 40.000 11.43 1.46 0.00 2.69
4857 9305 6.262496 CCTGTGCAAGTCATCTGATATTGAAT 59.738 38.462 11.43 0.00 0.00 2.57
4858 9306 7.023197 TGTGCAAGTCATCTGATATTGAATG 57.977 36.000 11.43 3.03 0.00 2.67
4859 9307 6.600427 TGTGCAAGTCATCTGATATTGAATGT 59.400 34.615 11.43 0.00 0.00 2.71
4860 9308 7.121611 TGTGCAAGTCATCTGATATTGAATGTT 59.878 33.333 11.43 0.00 0.00 2.71
4861 9309 8.615211 GTGCAAGTCATCTGATATTGAATGTTA 58.385 33.333 11.43 0.00 0.00 2.41
4862 9310 9.176460 TGCAAGTCATCTGATATTGAATGTTAA 57.824 29.630 11.43 0.00 0.00 2.01
4898 9346 8.677148 TGATAATAGAGAAGGTTAATGTTGCC 57.323 34.615 0.00 0.00 0.00 4.52
4899 9347 8.494433 TGATAATAGAGAAGGTTAATGTTGCCT 58.506 33.333 0.00 0.00 0.00 4.75
4900 9348 9.343539 GATAATAGAGAAGGTTAATGTTGCCTT 57.656 33.333 0.00 0.00 44.46 4.35
4901 9349 7.396540 AATAGAGAAGGTTAATGTTGCCTTG 57.603 36.000 0.00 0.00 42.13 3.61
4902 9350 4.729868 AGAGAAGGTTAATGTTGCCTTGT 58.270 39.130 0.00 0.00 42.13 3.16
4903 9351 5.140454 AGAGAAGGTTAATGTTGCCTTGTT 58.860 37.500 0.00 0.00 42.13 2.83
4904 9352 5.598417 AGAGAAGGTTAATGTTGCCTTGTTT 59.402 36.000 0.00 0.00 42.13 2.83
4905 9353 6.098266 AGAGAAGGTTAATGTTGCCTTGTTTT 59.902 34.615 0.00 0.00 42.13 2.43
4906 9354 6.280643 AGAAGGTTAATGTTGCCTTGTTTTC 58.719 36.000 0.00 0.00 42.13 2.29
4907 9355 5.869649 AGGTTAATGTTGCCTTGTTTTCT 57.130 34.783 0.00 0.00 0.00 2.52
4908 9356 6.233905 AGGTTAATGTTGCCTTGTTTTCTT 57.766 33.333 0.00 0.00 0.00 2.52
4909 9357 6.048509 AGGTTAATGTTGCCTTGTTTTCTTG 58.951 36.000 0.00 0.00 0.00 3.02
4910 9358 5.815222 GGTTAATGTTGCCTTGTTTTCTTGT 59.185 36.000 0.00 0.00 0.00 3.16
4911 9359 6.315144 GGTTAATGTTGCCTTGTTTTCTTGTT 59.685 34.615 0.00 0.00 0.00 2.83
4912 9360 7.148323 GGTTAATGTTGCCTTGTTTTCTTGTTT 60.148 33.333 0.00 0.00 0.00 2.83
4913 9361 8.874816 GTTAATGTTGCCTTGTTTTCTTGTTTA 58.125 29.630 0.00 0.00 0.00 2.01
4914 9362 9.606631 TTAATGTTGCCTTGTTTTCTTGTTTAT 57.393 25.926 0.00 0.00 0.00 1.40
4915 9363 8.504812 AATGTTGCCTTGTTTTCTTGTTTATT 57.495 26.923 0.00 0.00 0.00 1.40
4916 9364 7.913674 TGTTGCCTTGTTTTCTTGTTTATTT 57.086 28.000 0.00 0.00 0.00 1.40
4917 9365 9.606631 ATGTTGCCTTGTTTTCTTGTTTATTTA 57.393 25.926 0.00 0.00 0.00 1.40
4918 9366 9.436957 TGTTGCCTTGTTTTCTTGTTTATTTAA 57.563 25.926 0.00 0.00 0.00 1.52
4919 9367 9.914923 GTTGCCTTGTTTTCTTGTTTATTTAAG 57.085 29.630 0.00 0.00 0.00 1.85
4920 9368 8.655651 TGCCTTGTTTTCTTGTTTATTTAAGG 57.344 30.769 0.00 0.00 35.31 2.69
4921 9369 8.261522 TGCCTTGTTTTCTTGTTTATTTAAGGT 58.738 29.630 0.00 0.00 34.82 3.50
4922 9370 9.104965 GCCTTGTTTTCTTGTTTATTTAAGGTT 57.895 29.630 0.00 0.00 34.82 3.50
4940 9388 9.617975 TTTAAGGTTTTTGCTTTTTGTCAAATG 57.382 25.926 0.00 0.00 32.92 2.32
4941 9389 7.446001 AAGGTTTTTGCTTTTTGTCAAATGA 57.554 28.000 0.00 0.00 32.92 2.57
4942 9390 7.446001 AGGTTTTTGCTTTTTGTCAAATGAA 57.554 28.000 0.00 0.00 32.92 2.57
4943 9391 7.304735 AGGTTTTTGCTTTTTGTCAAATGAAC 58.695 30.769 0.00 0.00 32.92 3.18
4944 9392 7.040823 AGGTTTTTGCTTTTTGTCAAATGAACA 60.041 29.630 0.00 0.00 32.92 3.18
4945 9393 7.592903 GGTTTTTGCTTTTTGTCAAATGAACAA 59.407 29.630 0.00 0.00 32.92 2.83
4946 9394 8.962111 GTTTTTGCTTTTTGTCAAATGAACAAA 58.038 25.926 0.00 5.72 32.92 2.83
4947 9395 8.499514 TTTTGCTTTTTGTCAAATGAACAAAC 57.500 26.923 0.00 0.00 33.74 2.93
4948 9396 7.432350 TTGCTTTTTGTCAAATGAACAAACT 57.568 28.000 0.00 0.00 33.74 2.66
4949 9397 6.829703 TGCTTTTTGTCAAATGAACAAACTG 58.170 32.000 0.00 0.07 33.74 3.16
4950 9398 6.128336 TGCTTTTTGTCAAATGAACAAACTGG 60.128 34.615 0.00 0.00 33.74 4.00
4951 9399 5.793026 TTTTGTCAAATGAACAAACTGGC 57.207 34.783 0.00 0.00 33.74 4.85
4952 9400 4.734398 TTGTCAAATGAACAAACTGGCT 57.266 36.364 0.00 0.00 0.00 4.75
4953 9401 4.305989 TGTCAAATGAACAAACTGGCTC 57.694 40.909 0.00 0.00 0.00 4.70
4954 9402 3.953612 TGTCAAATGAACAAACTGGCTCT 59.046 39.130 0.00 0.00 0.00 4.09
4955 9403 4.402155 TGTCAAATGAACAAACTGGCTCTT 59.598 37.500 0.00 0.00 0.00 2.85
4956 9404 4.741676 GTCAAATGAACAAACTGGCTCTTG 59.258 41.667 0.00 0.00 0.00 3.02
4957 9405 4.053295 CAAATGAACAAACTGGCTCTTGG 58.947 43.478 0.00 0.00 0.00 3.61
4958 9406 2.435372 TGAACAAACTGGCTCTTGGT 57.565 45.000 0.00 0.00 0.00 3.67
4959 9407 2.023673 TGAACAAACTGGCTCTTGGTG 58.976 47.619 0.00 0.00 0.00 4.17
4960 9408 2.024414 GAACAAACTGGCTCTTGGTGT 58.976 47.619 0.00 0.00 0.00 4.16
4961 9409 2.143876 ACAAACTGGCTCTTGGTGTT 57.856 45.000 0.00 0.00 0.00 3.32
4962 9410 1.750778 ACAAACTGGCTCTTGGTGTTG 59.249 47.619 0.00 0.00 0.00 3.33
4963 9411 1.750778 CAAACTGGCTCTTGGTGTTGT 59.249 47.619 0.00 0.00 0.00 3.32
4964 9412 2.948979 CAAACTGGCTCTTGGTGTTGTA 59.051 45.455 0.00 0.00 0.00 2.41
4965 9413 2.550830 ACTGGCTCTTGGTGTTGTAG 57.449 50.000 0.00 0.00 0.00 2.74
4966 9414 2.047061 ACTGGCTCTTGGTGTTGTAGA 58.953 47.619 0.00 0.00 0.00 2.59
4967 9415 2.438021 ACTGGCTCTTGGTGTTGTAGAA 59.562 45.455 0.00 0.00 0.00 2.10
4968 9416 3.118038 ACTGGCTCTTGGTGTTGTAGAAA 60.118 43.478 0.00 0.00 0.00 2.52
4969 9417 3.882888 CTGGCTCTTGGTGTTGTAGAAAA 59.117 43.478 0.00 0.00 0.00 2.29
4970 9418 3.882888 TGGCTCTTGGTGTTGTAGAAAAG 59.117 43.478 0.00 0.00 0.00 2.27
4971 9419 4.134563 GGCTCTTGGTGTTGTAGAAAAGA 58.865 43.478 0.00 0.00 0.00 2.52
4972 9420 4.762251 GGCTCTTGGTGTTGTAGAAAAGAT 59.238 41.667 0.00 0.00 0.00 2.40
4973 9421 5.938125 GGCTCTTGGTGTTGTAGAAAAGATA 59.062 40.000 0.00 0.00 0.00 1.98
4974 9422 6.599638 GGCTCTTGGTGTTGTAGAAAAGATAT 59.400 38.462 0.00 0.00 0.00 1.63
4975 9423 7.201652 GGCTCTTGGTGTTGTAGAAAAGATATC 60.202 40.741 0.00 0.00 0.00 1.63
4976 9424 7.334421 GCTCTTGGTGTTGTAGAAAAGATATCA 59.666 37.037 5.32 0.00 0.00 2.15
4977 9425 9.219603 CTCTTGGTGTTGTAGAAAAGATATCAA 57.780 33.333 5.32 0.00 0.00 2.57
4978 9426 9.219603 TCTTGGTGTTGTAGAAAAGATATCAAG 57.780 33.333 5.32 0.00 0.00 3.02
4979 9427 8.918202 TTGGTGTTGTAGAAAAGATATCAAGT 57.082 30.769 5.32 0.00 0.00 3.16
4980 9428 8.322906 TGGTGTTGTAGAAAAGATATCAAGTG 57.677 34.615 5.32 0.00 0.00 3.16
4981 9429 8.154203 TGGTGTTGTAGAAAAGATATCAAGTGA 58.846 33.333 5.32 0.00 0.00 3.41
4982 9430 9.167311 GGTGTTGTAGAAAAGATATCAAGTGAT 57.833 33.333 5.32 0.00 38.51 3.06
4999 9447 8.997621 TCAAGTGATTCTTATGGTAACAGTAC 57.002 34.615 0.00 0.00 42.36 2.73
5000 9448 8.812972 TCAAGTGATTCTTATGGTAACAGTACT 58.187 33.333 0.00 0.00 42.36 2.73
5001 9449 8.873830 CAAGTGATTCTTATGGTAACAGTACTG 58.126 37.037 21.44 21.44 42.36 2.74
5084 9574 3.561310 CAGCTTAGCACTTCAGTTCAACA 59.439 43.478 7.07 0.00 0.00 3.33
5209 9704 2.672478 CGAGAGGTAGTTTGCCTGTCAG 60.672 54.545 10.15 0.00 44.01 3.51
5227 9722 7.821359 GCCTGTCAGATCTCTGCATATAATTTA 59.179 37.037 0.00 0.00 43.46 1.40
5233 9728 8.379161 CAGATCTCTGCATATAATTTAAGTCGC 58.621 37.037 0.00 0.00 37.15 5.19
5236 9731 8.076714 TCTCTGCATATAATTTAAGTCGCTTG 57.923 34.615 0.00 0.00 0.00 4.01
5459 9954 2.545106 GCTGTTTTTGTGGAAATGCCTG 59.455 45.455 0.00 0.00 37.63 4.85
5501 9996 2.880268 TCAGCAATTCAAGACCAGTGTG 59.120 45.455 0.00 0.00 0.00 3.82
5600 10095 4.391155 TGCCAAACAGTAGGAAAACGTAT 58.609 39.130 0.00 0.00 0.00 3.06
5707 10202 7.037873 TCCCTGTTTCCTACTTTTATGCTTCTA 60.038 37.037 0.00 0.00 0.00 2.10
5726 10221 9.539825 TGCTTCTAGTTCATGAAGATAAAGATC 57.460 33.333 8.80 0.00 41.38 2.75
5738 10233 8.789767 TGAAGATAAAGATCCATTCTAGGTCT 57.210 34.615 0.00 0.00 33.05 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 3.358111 TTGTCTGTTGTGTCTTTGGGA 57.642 42.857 0.00 0.00 0.00 4.37
120 121 0.391597 ACCGAGGTGTGTAACTGTGG 59.608 55.000 0.00 0.00 38.04 4.17
123 124 2.743636 ATGACCGAGGTGTGTAACTG 57.256 50.000 0.00 0.00 38.04 3.16
215 216 0.699399 TGAGGACGAGGGAGAGTTCT 59.301 55.000 0.00 0.00 0.00 3.01
236 237 1.195115 CCCTCGACCTCTTGATCCAA 58.805 55.000 0.00 0.00 0.00 3.53
248 249 2.024871 CTCGATGACGCCCTCGAC 59.975 66.667 0.00 0.00 38.86 4.20
263 264 1.136141 CATTCAGCACACGTTCAGCTC 60.136 52.381 3.38 0.00 36.26 4.09
297 298 2.088950 ACCAATCCAAGTACCGAACG 57.911 50.000 0.00 0.00 0.00 3.95
313 314 1.445410 CGTCTTCGCGATCCAACCA 60.445 57.895 10.88 0.00 0.00 3.67
468 469 3.810188 TGGCGGTGTTGGGGAACA 61.810 61.111 0.00 0.00 0.00 3.18
481 482 3.151022 GAGGAGAGGAGGGTGGCG 61.151 72.222 0.00 0.00 0.00 5.69
536 537 0.586802 GCAAGAAAGGAAGCGAACGT 59.413 50.000 0.00 0.00 0.00 3.99
620 621 3.512680 CAAATAGAGGCGAGAAAGACGT 58.487 45.455 0.00 0.00 0.00 4.34
674 675 0.324943 GCAAGAGAAGCCCTACACCA 59.675 55.000 0.00 0.00 0.00 4.17
705 706 1.976404 TGATGATGAGGAGGAGGCATC 59.024 52.381 0.00 0.00 39.02 3.91
708 709 1.278699 GGATGATGATGAGGAGGAGGC 59.721 57.143 0.00 0.00 0.00 4.70
766 767 0.951040 GAAGCCCTGTGAAGGTGTCG 60.951 60.000 0.00 0.00 0.00 4.35
854 855 5.604650 AGAGGAGAAGAAGACCAAGAAAGAA 59.395 40.000 0.00 0.00 0.00 2.52
855 856 5.151454 AGAGGAGAAGAAGACCAAGAAAGA 58.849 41.667 0.00 0.00 0.00 2.52
924 2669 1.337823 GCAGGGAGACAGCGTTTCTTA 60.338 52.381 0.00 0.00 0.00 2.10
1003 2755 2.761809 TGATGGAATTGGGGATTTGGG 58.238 47.619 0.00 0.00 0.00 4.12
1153 2920 4.923942 CAGCGCATCCTCCGGCAT 62.924 66.667 11.47 0.00 0.00 4.40
1846 3613 1.035139 AACAAAGGAGCAAGCTGTGG 58.965 50.000 0.00 0.00 0.00 4.17
1932 3701 2.159156 TCGCAGTATCCGCAACAGTAAT 60.159 45.455 0.00 0.00 0.00 1.89
1970 3739 3.470709 ACTGACATATGCCAATTCCTCG 58.529 45.455 1.58 0.00 0.00 4.63
1985 3754 2.161410 GTGCAACAACAGACAACTGACA 59.839 45.455 0.00 0.00 41.01 3.58
1986 3755 2.477863 GGTGCAACAACAGACAACTGAC 60.478 50.000 0.00 0.00 42.41 3.51
2019 3788 2.676748 TGGCAAACTCCCAAAACTGAT 58.323 42.857 0.00 0.00 0.00 2.90
2051 3820 2.005451 CACAAGAGTGCAGGCTACATC 58.995 52.381 0.00 0.00 39.21 3.06
2144 3913 8.931568 GGAGTAATACCCAAGTAATCCTCTTAA 58.068 37.037 0.00 0.00 30.59 1.85
2210 3979 9.532494 AGAGCATTTAGATCACTATAGATCACT 57.468 33.333 6.78 3.53 45.39 3.41
2229 3998 9.566432 CCCTCTGTAAAGAAATATAAGAGCATT 57.434 33.333 0.00 0.00 0.00 3.56
2230 3999 8.938883 TCCCTCTGTAAAGAAATATAAGAGCAT 58.061 33.333 0.00 0.00 0.00 3.79
2231 4000 8.319057 TCCCTCTGTAAAGAAATATAAGAGCA 57.681 34.615 0.00 0.00 0.00 4.26
2232 4001 8.425703 ACTCCCTCTGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 0.00 4.09
2359 6515 5.076182 TCCAATTTTCAGTGCCAACATCTA 58.924 37.500 0.00 0.00 0.00 1.98
2518 6674 1.976132 GCAGGTCAGCATAGAGGCCA 61.976 60.000 5.01 0.00 0.00 5.36
2566 6722 8.383619 CGAATTCGAACTTCAACAGATATTTCT 58.616 33.333 23.29 0.00 43.02 2.52
2655 6812 4.899352 ACACCTTCATGCTCTCTTTAGT 57.101 40.909 0.00 0.00 0.00 2.24
2755 6912 7.650504 TCACTGAGCAATTTTTCTTCAAAGATG 59.349 33.333 0.00 0.00 34.49 2.90
2756 6913 7.650903 GTCACTGAGCAATTTTTCTTCAAAGAT 59.349 33.333 0.00 0.00 34.49 2.40
2757 6914 6.974622 GTCACTGAGCAATTTTTCTTCAAAGA 59.025 34.615 0.00 0.00 0.00 2.52
2758 6915 6.753279 TGTCACTGAGCAATTTTTCTTCAAAG 59.247 34.615 0.00 0.00 0.00 2.77
2844 7002 0.704076 ACTGCCCTTGCCCTTTCATA 59.296 50.000 0.00 0.00 36.33 2.15
2935 7093 4.765273 TCCACACAGCATTATATGTTCGT 58.235 39.130 0.00 0.00 0.00 3.85
3198 7396 7.777440 AGCCTTTCATTTCCAAAATAAACCAAA 59.223 29.630 0.00 0.00 0.00 3.28
3199 7397 7.286313 AGCCTTTCATTTCCAAAATAAACCAA 58.714 30.769 0.00 0.00 0.00 3.67
3200 7398 6.836242 AGCCTTTCATTTCCAAAATAAACCA 58.164 32.000 0.00 0.00 0.00 3.67
3317 7536 7.705325 ACTCTAACATCGCGACTATGTAAAAAT 59.295 33.333 12.93 0.00 36.56 1.82
3323 7542 3.792459 GCACTCTAACATCGCGACTATGT 60.792 47.826 12.93 9.98 39.22 2.29
3460 7687 5.044105 ACCCATACTTTCCAAAGCCTCTAAT 60.044 40.000 0.00 0.00 39.63 1.73
3508 7745 8.420222 CAAACCTTGTCTGAGATCTCATACTAT 58.580 37.037 30.30 16.67 39.13 2.12
3743 7981 8.786898 CACATTAACCTTCTATTGGACCATATG 58.213 37.037 0.00 0.00 0.00 1.78
3748 7986 7.336396 AGTACACATTAACCTTCTATTGGACC 58.664 38.462 0.00 0.00 0.00 4.46
3793 8040 9.048446 GTACAAAGTTGTATTAAGGTTGAGACA 57.952 33.333 7.14 0.00 44.59 3.41
3818 8065 9.310716 GTGTCTCAACTTTGTACTAACTTTAGT 57.689 33.333 6.85 6.85 45.39 2.24
3819 8066 9.530633 AGTGTCTCAACTTTGTACTAACTTTAG 57.469 33.333 0.00 0.00 36.82 1.85
3820 8067 9.880157 AAGTGTCTCAACTTTGTACTAACTTTA 57.120 29.630 0.00 0.00 37.05 1.85
3821 8068 8.788325 AAGTGTCTCAACTTTGTACTAACTTT 57.212 30.769 0.00 0.00 37.05 2.66
3827 8074 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
3828 8075 7.860872 CCCAAAATAAGTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
3829 8076 7.776030 TCCCAAAATAAGTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
3830 8077 6.605594 TCCCAAAATAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
3831 8078 6.918022 GTCCCAAAATAAGTGTCTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
3832 8079 6.238648 CGTCCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
3833 8080 5.238650 CGTCCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
3834 8081 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
3835 8082 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
3836 8083 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
3837 8084 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
3838 8085 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
3839 8086 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
3840 8087 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
3841 8088 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
3842 8089 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
3843 8090 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
3844 8091 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
3845 8092 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
3846 8093 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3847 8094 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
3848 8095 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
3849 8096 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
3850 8097 4.044952 TCATATATACTCCCTCCGTCCCAA 59.955 45.833 0.00 0.00 0.00 4.12
3851 8098 3.594685 TCATATATACTCCCTCCGTCCCA 59.405 47.826 0.00 0.00 0.00 4.37
3852 8099 4.246712 TCATATATACTCCCTCCGTCCC 57.753 50.000 0.00 0.00 0.00 4.46
3853 8100 6.487331 CAGTATCATATATACTCCCTCCGTCC 59.513 46.154 0.00 0.00 32.93 4.79
3854 8101 7.281098 TCAGTATCATATATACTCCCTCCGTC 58.719 42.308 0.00 0.00 32.93 4.79
3855 8102 7.209340 TCAGTATCATATATACTCCCTCCGT 57.791 40.000 0.00 0.00 32.93 4.69
3856 8103 7.776030 AGTTCAGTATCATATATACTCCCTCCG 59.224 40.741 0.00 0.00 32.93 4.63
3867 8114 9.740239 GTCGTGGTTTTAGTTCAGTATCATATA 57.260 33.333 0.00 0.00 0.00 0.86
3868 8115 7.709613 GGTCGTGGTTTTAGTTCAGTATCATAT 59.290 37.037 0.00 0.00 0.00 1.78
3869 8116 7.037438 GGTCGTGGTTTTAGTTCAGTATCATA 58.963 38.462 0.00 0.00 0.00 2.15
3870 8117 5.873164 GGTCGTGGTTTTAGTTCAGTATCAT 59.127 40.000 0.00 0.00 0.00 2.45
3871 8118 5.232463 GGTCGTGGTTTTAGTTCAGTATCA 58.768 41.667 0.00 0.00 0.00 2.15
3872 8119 4.628766 GGGTCGTGGTTTTAGTTCAGTATC 59.371 45.833 0.00 0.00 0.00 2.24
3873 8120 4.285260 AGGGTCGTGGTTTTAGTTCAGTAT 59.715 41.667 0.00 0.00 0.00 2.12
3874 8121 3.642848 AGGGTCGTGGTTTTAGTTCAGTA 59.357 43.478 0.00 0.00 0.00 2.74
3875 8122 2.436911 AGGGTCGTGGTTTTAGTTCAGT 59.563 45.455 0.00 0.00 0.00 3.41
3876 8123 3.121738 AGGGTCGTGGTTTTAGTTCAG 57.878 47.619 0.00 0.00 0.00 3.02
3877 8124 3.564053 AAGGGTCGTGGTTTTAGTTCA 57.436 42.857 0.00 0.00 0.00 3.18
4082 8329 3.532892 TCTCACTAACTCGTCGACAAC 57.467 47.619 17.16 0.00 0.00 3.32
4173 8420 0.537188 GATCCAGCTCCCGTTCAGAA 59.463 55.000 0.00 0.00 0.00 3.02
4221 8468 2.930040 CTCTGTATGGCCACAAGTAACG 59.070 50.000 8.16 0.00 0.00 3.18
4454 8701 6.101734 TGCCAGAAGGACATATCTTTAGGATT 59.898 38.462 0.00 0.00 36.89 3.01
4602 8849 0.404040 TACAAGACCAAAGGGCCAGG 59.596 55.000 6.18 7.28 37.90 4.45
4813 9261 5.866633 CACAGGAAGTTGCAAAGTTTTACAA 59.133 36.000 0.00 0.00 40.14 2.41
4814 9262 5.406649 CACAGGAAGTTGCAAAGTTTTACA 58.593 37.500 0.00 0.00 40.14 2.41
4815 9263 4.267690 GCACAGGAAGTTGCAAAGTTTTAC 59.732 41.667 0.00 0.00 40.14 2.01
4816 9264 4.081972 TGCACAGGAAGTTGCAAAGTTTTA 60.082 37.500 0.00 0.00 40.14 1.52
4817 9265 3.261580 GCACAGGAAGTTGCAAAGTTTT 58.738 40.909 0.00 0.00 40.14 2.43
4818 9266 2.233431 TGCACAGGAAGTTGCAAAGTTT 59.767 40.909 0.00 0.00 40.14 2.66
4819 9267 1.824230 TGCACAGGAAGTTGCAAAGTT 59.176 42.857 0.00 0.00 43.41 2.66
4820 9268 1.473258 TGCACAGGAAGTTGCAAAGT 58.527 45.000 0.00 0.00 33.44 2.66
4821 9269 2.159198 ACTTGCACAGGAAGTTGCAAAG 60.159 45.455 0.00 7.16 40.82 2.77
4822 9270 1.824230 ACTTGCACAGGAAGTTGCAAA 59.176 42.857 0.00 0.00 40.82 3.68
4823 9271 1.405105 GACTTGCACAGGAAGTTGCAA 59.595 47.619 8.58 8.58 39.89 4.08
4824 9272 1.024271 GACTTGCACAGGAAGTTGCA 58.976 50.000 5.41 0.00 33.71 4.08
4825 9273 1.024271 TGACTTGCACAGGAAGTTGC 58.976 50.000 5.41 0.00 33.71 4.17
4826 9274 3.058432 CAGATGACTTGCACAGGAAGTTG 60.058 47.826 5.41 0.00 33.71 3.16
4827 9275 3.144506 CAGATGACTTGCACAGGAAGTT 58.855 45.455 5.41 0.00 33.71 2.66
4828 9276 2.369860 TCAGATGACTTGCACAGGAAGT 59.630 45.455 3.52 3.52 36.33 3.01
4829 9277 3.049708 TCAGATGACTTGCACAGGAAG 57.950 47.619 0.00 0.00 0.00 3.46
4830 9278 3.708403 ATCAGATGACTTGCACAGGAA 57.292 42.857 0.00 0.00 0.00 3.36
4831 9279 5.104817 TCAATATCAGATGACTTGCACAGGA 60.105 40.000 0.00 0.00 0.00 3.86
4832 9280 5.121105 TCAATATCAGATGACTTGCACAGG 58.879 41.667 0.00 0.00 0.00 4.00
4833 9281 6.673154 TTCAATATCAGATGACTTGCACAG 57.327 37.500 0.00 0.00 0.00 3.66
4834 9282 6.600427 ACATTCAATATCAGATGACTTGCACA 59.400 34.615 0.00 0.00 0.00 4.57
4835 9283 7.024340 ACATTCAATATCAGATGACTTGCAC 57.976 36.000 0.00 0.00 0.00 4.57
4836 9284 7.634671 AACATTCAATATCAGATGACTTGCA 57.365 32.000 0.00 0.00 0.00 4.08
4872 9320 9.289782 GGCAACATTAACCTTCTCTATTATCAT 57.710 33.333 0.00 0.00 0.00 2.45
4873 9321 8.494433 AGGCAACATTAACCTTCTCTATTATCA 58.506 33.333 0.00 0.00 41.41 2.15
4874 9322 8.910351 AGGCAACATTAACCTTCTCTATTATC 57.090 34.615 0.00 0.00 41.41 1.75
4875 9323 9.125026 CAAGGCAACATTAACCTTCTCTATTAT 57.875 33.333 0.00 0.00 41.90 1.28
4876 9324 8.107095 ACAAGGCAACATTAACCTTCTCTATTA 58.893 33.333 0.00 0.00 41.90 0.98
4877 9325 6.948309 ACAAGGCAACATTAACCTTCTCTATT 59.052 34.615 0.00 0.00 41.90 1.73
4878 9326 6.485171 ACAAGGCAACATTAACCTTCTCTAT 58.515 36.000 0.00 0.00 41.90 1.98
4879 9327 5.876357 ACAAGGCAACATTAACCTTCTCTA 58.124 37.500 0.00 0.00 41.90 2.43
4880 9328 4.729868 ACAAGGCAACATTAACCTTCTCT 58.270 39.130 0.00 0.00 41.90 3.10
4881 9329 5.453567 AACAAGGCAACATTAACCTTCTC 57.546 39.130 0.00 0.00 41.90 2.87
4882 9330 5.869649 AAACAAGGCAACATTAACCTTCT 57.130 34.783 0.00 0.00 41.90 2.85
4883 9331 6.280643 AGAAAACAAGGCAACATTAACCTTC 58.719 36.000 0.00 0.00 41.90 3.46
4884 9332 6.233905 AGAAAACAAGGCAACATTAACCTT 57.766 33.333 0.00 0.00 44.66 3.50
4885 9333 5.869649 AGAAAACAAGGCAACATTAACCT 57.130 34.783 0.00 0.00 41.41 3.50
4886 9334 5.815222 ACAAGAAAACAAGGCAACATTAACC 59.185 36.000 0.00 0.00 41.41 2.85
4887 9335 6.902224 ACAAGAAAACAAGGCAACATTAAC 57.098 33.333 0.00 0.00 41.41 2.01
4888 9336 7.913674 AAACAAGAAAACAAGGCAACATTAA 57.086 28.000 0.00 0.00 41.41 1.40
4889 9337 9.606631 AATAAACAAGAAAACAAGGCAACATTA 57.393 25.926 0.00 0.00 41.41 1.90
4890 9338 8.504812 AATAAACAAGAAAACAAGGCAACATT 57.495 26.923 0.00 0.00 41.41 2.71
4891 9339 8.504812 AAATAAACAAGAAAACAAGGCAACAT 57.495 26.923 0.00 0.00 41.41 2.71
4892 9340 7.913674 AAATAAACAAGAAAACAAGGCAACA 57.086 28.000 0.00 0.00 41.41 3.33
4893 9341 9.914923 CTTAAATAAACAAGAAAACAAGGCAAC 57.085 29.630 0.00 0.00 0.00 4.17
4894 9342 9.103861 CCTTAAATAAACAAGAAAACAAGGCAA 57.896 29.630 0.00 0.00 0.00 4.52
4895 9343 8.261522 ACCTTAAATAAACAAGAAAACAAGGCA 58.738 29.630 0.00 0.00 33.65 4.75
4896 9344 8.657074 ACCTTAAATAAACAAGAAAACAAGGC 57.343 30.769 0.00 0.00 33.65 4.35
4914 9362 9.617975 CATTTGACAAAAAGCAAAAACCTTAAA 57.382 25.926 4.41 0.00 37.52 1.52
4915 9363 9.003658 TCATTTGACAAAAAGCAAAAACCTTAA 57.996 25.926 4.41 0.00 37.52 1.85
4916 9364 8.553459 TCATTTGACAAAAAGCAAAAACCTTA 57.447 26.923 4.41 0.00 37.52 2.69
4917 9365 7.446001 TCATTTGACAAAAAGCAAAAACCTT 57.554 28.000 4.41 0.00 37.52 3.50
4918 9366 7.040823 TGTTCATTTGACAAAAAGCAAAAACCT 60.041 29.630 4.41 0.00 37.52 3.50
4919 9367 7.080724 TGTTCATTTGACAAAAAGCAAAAACC 58.919 30.769 4.41 0.00 37.52 3.27
4920 9368 8.499514 TTGTTCATTTGACAAAAAGCAAAAAC 57.500 26.923 4.41 2.85 37.52 2.43
4921 9369 8.962111 GTTTGTTCATTTGACAAAAAGCAAAAA 58.038 25.926 20.19 10.06 37.52 1.94
4922 9370 8.348507 AGTTTGTTCATTTGACAAAAAGCAAAA 58.651 25.926 20.19 11.14 37.52 2.44
4923 9371 7.802251 CAGTTTGTTCATTTGACAAAAAGCAAA 59.198 29.630 17.16 17.16 38.25 3.68
4924 9372 7.296660 CAGTTTGTTCATTTGACAAAAAGCAA 58.703 30.769 4.41 8.02 35.50 3.91
4925 9373 6.128336 CCAGTTTGTTCATTTGACAAAAAGCA 60.128 34.615 4.41 2.30 35.50 3.91
4926 9374 6.250089 CCAGTTTGTTCATTTGACAAAAAGC 58.750 36.000 4.41 0.00 35.50 3.51
4927 9375 6.092533 AGCCAGTTTGTTCATTTGACAAAAAG 59.907 34.615 4.41 1.22 35.50 2.27
4928 9376 5.936956 AGCCAGTTTGTTCATTTGACAAAAA 59.063 32.000 4.41 0.00 35.50 1.94
4929 9377 5.486526 AGCCAGTTTGTTCATTTGACAAAA 58.513 33.333 4.41 0.00 35.50 2.44
4930 9378 5.083533 AGCCAGTTTGTTCATTTGACAAA 57.916 34.783 2.48 2.48 0.00 2.83
4931 9379 4.402155 AGAGCCAGTTTGTTCATTTGACAA 59.598 37.500 0.00 0.00 0.00 3.18
4932 9380 3.953612 AGAGCCAGTTTGTTCATTTGACA 59.046 39.130 0.00 0.00 0.00 3.58
4933 9381 4.574599 AGAGCCAGTTTGTTCATTTGAC 57.425 40.909 0.00 0.00 0.00 3.18
4934 9382 4.202141 CCAAGAGCCAGTTTGTTCATTTGA 60.202 41.667 0.00 0.00 0.00 2.69
4935 9383 4.053295 CCAAGAGCCAGTTTGTTCATTTG 58.947 43.478 0.00 0.00 0.00 2.32
4936 9384 3.706086 ACCAAGAGCCAGTTTGTTCATTT 59.294 39.130 0.00 0.00 0.00 2.32
4937 9385 3.068590 CACCAAGAGCCAGTTTGTTCATT 59.931 43.478 0.00 0.00 0.00 2.57
4938 9386 2.624838 CACCAAGAGCCAGTTTGTTCAT 59.375 45.455 0.00 0.00 0.00 2.57
4939 9387 2.023673 CACCAAGAGCCAGTTTGTTCA 58.976 47.619 0.00 0.00 0.00 3.18
4940 9388 2.024414 ACACCAAGAGCCAGTTTGTTC 58.976 47.619 0.00 0.00 0.00 3.18
4941 9389 2.143876 ACACCAAGAGCCAGTTTGTT 57.856 45.000 0.00 0.00 0.00 2.83
4942 9390 1.750778 CAACACCAAGAGCCAGTTTGT 59.249 47.619 0.00 0.00 0.00 2.83
4943 9391 1.750778 ACAACACCAAGAGCCAGTTTG 59.249 47.619 0.00 0.00 0.00 2.93
4944 9392 2.143876 ACAACACCAAGAGCCAGTTT 57.856 45.000 0.00 0.00 0.00 2.66
4945 9393 2.438021 TCTACAACACCAAGAGCCAGTT 59.562 45.455 0.00 0.00 0.00 3.16
4946 9394 2.047061 TCTACAACACCAAGAGCCAGT 58.953 47.619 0.00 0.00 0.00 4.00
4947 9395 2.839486 TCTACAACACCAAGAGCCAG 57.161 50.000 0.00 0.00 0.00 4.85
4948 9396 3.569194 TTTCTACAACACCAAGAGCCA 57.431 42.857 0.00 0.00 0.00 4.75
4949 9397 4.134563 TCTTTTCTACAACACCAAGAGCC 58.865 43.478 0.00 0.00 0.00 4.70
4950 9398 5.948992 ATCTTTTCTACAACACCAAGAGC 57.051 39.130 0.00 0.00 0.00 4.09
4951 9399 8.777865 TGATATCTTTTCTACAACACCAAGAG 57.222 34.615 3.98 0.00 0.00 2.85
4952 9400 9.219603 CTTGATATCTTTTCTACAACACCAAGA 57.780 33.333 3.98 0.00 0.00 3.02
4953 9401 9.003658 ACTTGATATCTTTTCTACAACACCAAG 57.996 33.333 3.98 0.00 0.00 3.61
4954 9402 8.783093 CACTTGATATCTTTTCTACAACACCAA 58.217 33.333 3.98 0.00 0.00 3.67
4955 9403 8.154203 TCACTTGATATCTTTTCTACAACACCA 58.846 33.333 3.98 0.00 0.00 4.17
4956 9404 8.547967 TCACTTGATATCTTTTCTACAACACC 57.452 34.615 3.98 0.00 0.00 4.16
4973 9421 9.601217 GTACTGTTACCATAAGAATCACTTGAT 57.399 33.333 0.00 0.00 39.38 2.57
4974 9422 8.812972 AGTACTGTTACCATAAGAATCACTTGA 58.187 33.333 0.00 0.00 39.38 3.02
4975 9423 8.873830 CAGTACTGTTACCATAAGAATCACTTG 58.126 37.037 15.06 0.00 39.38 3.16
4976 9424 8.594550 ACAGTACTGTTACCATAAGAATCACTT 58.405 33.333 22.95 0.00 41.83 3.16
4977 9425 8.135382 ACAGTACTGTTACCATAAGAATCACT 57.865 34.615 22.95 0.00 41.83 3.41
5006 9454 9.601217 CTGAGCAAAAAGTGGTACTAGTATTAT 57.399 33.333 5.75 0.00 38.34 1.28
5007 9455 7.548075 GCTGAGCAAAAAGTGGTACTAGTATTA 59.452 37.037 5.75 0.00 38.34 0.98
5008 9456 6.371825 GCTGAGCAAAAAGTGGTACTAGTATT 59.628 38.462 5.75 0.00 38.34 1.89
5009 9457 5.875359 GCTGAGCAAAAAGTGGTACTAGTAT 59.125 40.000 5.75 0.00 38.34 2.12
5010 9458 5.011738 AGCTGAGCAAAAAGTGGTACTAGTA 59.988 40.000 7.39 0.00 38.34 1.82
5011 9459 4.065789 GCTGAGCAAAAAGTGGTACTAGT 58.934 43.478 0.00 0.00 38.34 2.57
5012 9460 4.319177 AGCTGAGCAAAAAGTGGTACTAG 58.681 43.478 7.39 0.00 38.34 2.57
5013 9461 4.351874 AGCTGAGCAAAAAGTGGTACTA 57.648 40.909 7.39 0.00 38.34 1.82
5014 9462 3.214696 AGCTGAGCAAAAAGTGGTACT 57.785 42.857 7.39 0.00 38.34 2.73
5015 9463 4.695455 TGATAGCTGAGCAAAAAGTGGTAC 59.305 41.667 7.39 0.00 38.34 3.34
5016 9464 4.905429 TGATAGCTGAGCAAAAAGTGGTA 58.095 39.130 7.39 0.00 38.34 3.25
5084 9574 1.191535 TTACCTATCCACACAGCGCT 58.808 50.000 2.64 2.64 0.00 5.92
5151 9646 7.166851 CAGGGATATATGCTCTTGAGAAATGT 58.833 38.462 4.09 0.00 0.00 2.71
5209 9704 8.472683 AGCGACTTAAATTATATGCAGAGATC 57.527 34.615 0.00 0.00 0.00 2.75
5227 9722 1.066143 CCACCAGATACCAAGCGACTT 60.066 52.381 0.00 0.00 0.00 3.01
5233 9728 3.263425 ACCACTTACCACCAGATACCAAG 59.737 47.826 0.00 0.00 0.00 3.61
5236 9731 4.223477 TGTTACCACTTACCACCAGATACC 59.777 45.833 0.00 0.00 0.00 2.73
5571 10066 1.000274 CCTACTGTTTGGCAAAGTGGC 60.000 52.381 13.94 1.92 44.03 5.01
5600 10095 4.993584 GCATCTGCTTGCTATTCTTAGCTA 59.006 41.667 6.56 0.00 43.49 3.32
5685 10180 9.216117 GAACTAGAAGCATAAAAGTAGGAAACA 57.784 33.333 0.00 0.00 0.00 2.83
5723 10218 8.650143 AAGAGATCTTAGACCTAGAATGGATC 57.350 38.462 0.00 0.00 33.79 3.36
5726 10221 7.288852 TCCAAAGAGATCTTAGACCTAGAATGG 59.711 40.741 0.00 0.00 34.61 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.