Multiple sequence alignment - TraesCS5D01G114400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G114400 chr5D 100.000 4852 0 0 1 4852 133671552 133666701 0.000000e+00 8961
1 TraesCS5D01G114400 chr5D 84.615 208 29 3 3 209 548970300 548970505 2.290000e-48 204
2 TraesCS5D01G114400 chr5D 97.436 78 2 0 4775 4852 237311259 237311336 3.050000e-27 134
3 TraesCS5D01G114400 chr5B 90.980 3825 164 71 604 4313 145023746 145019988 0.000000e+00 4985
4 TraesCS5D01G114400 chr5B 85.641 195 18 7 311 501 145024161 145023973 3.830000e-46 196
5 TraesCS5D01G114400 chr5B 92.857 126 7 1 4630 4755 145019990 145019867 1.070000e-41 182
6 TraesCS5D01G114400 chr5B 93.805 113 6 1 208 320 145026889 145026778 8.350000e-38 169
7 TraesCS5D01G114400 chr5B 97.436 78 2 0 4775 4852 173850970 173850893 3.050000e-27 134
8 TraesCS5D01G114400 chr5B 96.250 80 3 0 4773 4852 561939443 561939364 1.100000e-26 132
9 TraesCS5D01G114400 chr5B 85.586 111 9 3 494 604 145023950 145023847 5.130000e-20 110
10 TraesCS5D01G114400 chr5A 88.403 2561 137 65 1 2466 156950640 156948145 0.000000e+00 2937
11 TraesCS5D01G114400 chr5A 94.533 1573 55 14 2656 4210 156947875 156946316 0.000000e+00 2399
12 TraesCS5D01G114400 chr5A 85.377 212 28 3 1 210 635550721 635550931 2.940000e-52 217
13 TraesCS5D01G114400 chr5A 92.593 81 4 1 4627 4707 156922873 156922951 1.100000e-21 115
14 TraesCS5D01G114400 chr7A 95.597 318 13 1 4313 4630 287181411 287181727 4.330000e-140 508
15 TraesCS5D01G114400 chr7A 76.549 226 43 9 4311 4531 724141982 724142202 1.100000e-21 115
16 TraesCS5D01G114400 chr7D 88.995 209 18 3 1 208 620696783 620696579 2.240000e-63 254
17 TraesCS5D01G114400 chr7D 83.019 212 32 4 3 212 606789705 606789496 6.410000e-44 189
18 TraesCS5D01G114400 chr7D 97.436 78 2 0 4775 4852 576074742 576074665 3.050000e-27 134
19 TraesCS5D01G114400 chr4D 84.259 216 30 4 5 218 111143342 111143129 1.770000e-49 207
20 TraesCS5D01G114400 chr4D 96.203 79 3 0 4774 4852 83775936 83775858 3.940000e-26 130
21 TraesCS5D01G114400 chr2A 84.762 210 25 5 3 208 516305618 516305824 2.290000e-48 204
22 TraesCS5D01G114400 chr2B 84.360 211 28 5 1 208 570286357 570286149 8.230000e-48 202
23 TraesCS5D01G114400 chr2B 89.583 144 14 1 4487 4630 104950700 104950842 1.070000e-41 182
24 TraesCS5D01G114400 chr3A 83.962 212 28 6 3 210 339620767 339620558 1.070000e-46 198
25 TraesCS5D01G114400 chr3D 97.436 78 2 0 4775 4852 388434758 388434681 3.050000e-27 134
26 TraesCS5D01G114400 chr6D 96.154 78 3 0 4775 4852 17979974 17980051 1.420000e-25 128
27 TraesCS5D01G114400 chr6D 96.154 78 3 0 4775 4852 139614461 139614538 1.420000e-25 128
28 TraesCS5D01G114400 chr6D 96.154 78 3 0 4775 4852 154098188 154098111 1.420000e-25 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G114400 chr5D 133666701 133671552 4851 True 8961.0 8961 100.0000 1 4852 1 chr5D.!!$R1 4851
1 TraesCS5D01G114400 chr5B 145019867 145026889 7022 True 1128.4 4985 89.7738 208 4755 5 chr5B.!!$R3 4547
2 TraesCS5D01G114400 chr5A 156946316 156950640 4324 True 2668.0 2937 91.4680 1 4210 2 chr5A.!!$R1 4209

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
787 3571 0.027586 GCTCGTTTCTTTGTGTGCGT 59.972 50.0 0.00 0.0 0.00 5.24 F
1895 4730 0.248336 TATACTTGTCGCGAGTGCCG 60.248 55.0 10.24 0.0 38.08 5.69 F
2575 5512 0.036765 AAACTCGCGCTGTCCCATTA 60.037 50.0 5.56 0.0 0.00 1.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2491 5408 0.111639 CCGGGAAAGGGGAACTTGAA 59.888 55.000 0.0 0.0 39.96 2.69 R
2734 5710 1.065126 AGAGGGTGAATAAGGCAGCAC 60.065 52.381 0.0 0.0 35.57 4.40 R
4392 7384 0.034337 TGCGTTGGGGTAACAGACTC 59.966 55.000 0.0 0.0 39.30 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 38 8.705048 AATTAGAGACGAAAGAAACCATCTAC 57.295 34.615 0.00 0.00 37.42 2.59
80 82 5.521735 CGAGAGTGTGAAGAAGGATAAATGG 59.478 44.000 0.00 0.00 0.00 3.16
86 88 6.096001 GTGTGAAGAAGGATAAATGGCAAGAT 59.904 38.462 0.00 0.00 0.00 2.40
89 91 6.097270 TGAAGAAGGATAAATGGCAAGATTGG 59.903 38.462 0.00 0.00 0.00 3.16
91 93 5.595952 AGAAGGATAAATGGCAAGATTGGTC 59.404 40.000 0.00 0.00 0.00 4.02
95 97 6.491403 AGGATAAATGGCAAGATTGGTCATAC 59.509 38.462 0.00 0.00 0.00 2.39
97 99 3.558931 ATGGCAAGATTGGTCATACGA 57.441 42.857 0.00 0.00 0.00 3.43
98 100 3.342377 TGGCAAGATTGGTCATACGAA 57.658 42.857 0.00 0.00 0.00 3.85
101 103 5.432645 TGGCAAGATTGGTCATACGAAATA 58.567 37.500 0.00 0.00 0.00 1.40
177 179 2.433436 GGGCGTGTGGTATTTTCTCTT 58.567 47.619 0.00 0.00 0.00 2.85
178 180 2.418976 GGGCGTGTGGTATTTTCTCTTC 59.581 50.000 0.00 0.00 0.00 2.87
180 182 3.071479 GCGTGTGGTATTTTCTCTTCCA 58.929 45.455 0.00 0.00 0.00 3.53
188 190 5.095490 GGTATTTTCTCTTCCATTGCAACG 58.905 41.667 0.00 0.00 0.00 4.10
191 193 0.874390 TCTCTTCCATTGCAACGCAC 59.126 50.000 0.00 0.00 38.71 5.34
192 194 0.453282 CTCTTCCATTGCAACGCACG 60.453 55.000 0.00 0.00 38.71 5.34
193 195 0.882484 TCTTCCATTGCAACGCACGA 60.882 50.000 0.00 0.00 38.71 4.35
194 196 0.453282 CTTCCATTGCAACGCACGAG 60.453 55.000 0.00 0.00 38.71 4.18
202 204 0.511221 GCAACGCACGAGCTCTTTTA 59.489 50.000 12.85 0.00 39.10 1.52
236 238 9.574516 AATCCTAAAATGTATTTAGGCAGGTAG 57.425 33.333 18.02 1.81 46.59 3.18
256 258 4.342862 AGATCACGGATAGGATTTGGTG 57.657 45.455 0.00 0.00 0.00 4.17
347 2975 6.734104 TCACAAATTTTGAGGTGTTTTTGG 57.266 33.333 15.81 0.00 33.17 3.28
349 2977 6.712547 TCACAAATTTTGAGGTGTTTTTGGTT 59.287 30.769 15.81 0.00 33.17 3.67
350 2978 7.878127 TCACAAATTTTGAGGTGTTTTTGGTTA 59.122 29.630 15.81 0.00 33.17 2.85
356 2984 8.848474 TTTTGAGGTGTTTTTGGTTATTTCAA 57.152 26.923 0.00 0.00 0.00 2.69
357 2985 9.454859 TTTTGAGGTGTTTTTGGTTATTTCAAT 57.545 25.926 0.00 0.00 0.00 2.57
392 3035 8.902540 ACATACAGACTGAAATGAGTTAACAA 57.097 30.769 21.47 0.00 0.00 2.83
436 3079 9.614792 AGGGAGTAGAATATTTACACAACATTC 57.385 33.333 0.00 0.00 0.00 2.67
461 3108 1.684450 TCGCACGGGCAATTATCTAGA 59.316 47.619 11.77 0.00 41.24 2.43
491 3138 2.812011 GAGCGAAAAACTAAGCCAAGGA 59.188 45.455 0.00 0.00 0.00 3.36
492 3139 3.219281 AGCGAAAAACTAAGCCAAGGAA 58.781 40.909 0.00 0.00 0.00 3.36
535 3211 1.564622 CATCCACGCGCTTATTCGG 59.435 57.895 5.73 0.00 0.00 4.30
538 3214 0.248743 TCCACGCGCTTATTCGGTAG 60.249 55.000 5.73 0.00 0.00 3.18
635 3412 7.494625 TCCAAATAAAAGCGGATCTTAGTACTG 59.505 37.037 5.39 0.00 33.88 2.74
637 3414 7.772332 AATAAAAGCGGATCTTAGTACTGTG 57.228 36.000 5.39 0.00 33.88 3.66
686 3470 1.113788 TGCCAGCCAAATATCTTGCC 58.886 50.000 0.00 0.00 0.00 4.52
743 3527 1.070786 GCCCAAACCGACACTCTCA 59.929 57.895 0.00 0.00 0.00 3.27
747 3531 0.868406 CAAACCGACACTCTCAAGGC 59.132 55.000 0.00 0.00 0.00 4.35
774 3558 1.885850 GTGTGAACCGGTGCTCGTT 60.886 57.895 15.35 0.00 37.11 3.85
775 3559 1.153329 TGTGAACCGGTGCTCGTTT 60.153 52.632 15.35 0.00 37.11 3.60
776 3560 1.155424 TGTGAACCGGTGCTCGTTTC 61.155 55.000 15.35 3.41 40.11 2.78
777 3561 0.878961 GTGAACCGGTGCTCGTTTCT 60.879 55.000 15.35 0.00 40.30 2.52
787 3571 0.027586 GCTCGTTTCTTTGTGTGCGT 59.972 50.000 0.00 0.00 0.00 5.24
789 3573 1.062002 CTCGTTTCTTTGTGTGCGTGT 59.938 47.619 0.00 0.00 0.00 4.49
792 3576 0.808125 TTTCTTTGTGTGCGTGTGCT 59.192 45.000 0.00 0.00 43.34 4.40
981 3785 5.246307 ACTAGCTACGCTCCAATTCTTTTT 58.754 37.500 0.00 0.00 40.44 1.94
1025 3829 3.818787 GGAGCAACAGCGCCATGG 61.819 66.667 7.63 7.63 46.12 3.66
1191 3995 3.450096 TGCAGATGATCTAGCTGTGTCTT 59.550 43.478 14.65 0.00 44.58 3.01
1203 4011 3.066342 AGCTGTGTCTTGAATATGCATGC 59.934 43.478 11.82 11.82 0.00 4.06
1274 4098 4.357279 GGTTCTGCCTGCCTGCCT 62.357 66.667 0.00 0.00 0.00 4.75
1275 4099 3.060615 GTTCTGCCTGCCTGCCTG 61.061 66.667 0.00 0.00 0.00 4.85
1301 4125 2.100216 GCGGCAATTCATCGCGTT 59.900 55.556 5.77 0.00 40.06 4.84
1302 4126 1.514014 GCGGCAATTCATCGCGTTT 60.514 52.632 5.77 0.00 40.06 3.60
1306 4130 2.173964 GGCAATTCATCGCGTTTGTAC 58.826 47.619 5.77 0.00 0.00 2.90
1317 4141 3.000476 TCGCGTTTGTACATCGATTAAGC 60.000 43.478 19.97 7.50 0.00 3.09
1320 4144 3.269310 GTTTGTACATCGATTAAGCGCG 58.731 45.455 8.54 0.00 0.00 6.86
1402 4235 2.284150 CGATTTCATGGCGTACGTGATT 59.716 45.455 17.90 3.89 44.23 2.57
1403 4236 3.487942 CGATTTCATGGCGTACGTGATTA 59.512 43.478 17.90 4.89 44.23 1.75
1404 4237 4.026393 CGATTTCATGGCGTACGTGATTAA 60.026 41.667 17.90 5.64 44.23 1.40
1405 4238 5.333035 CGATTTCATGGCGTACGTGATTAAT 60.333 40.000 17.90 9.97 44.23 1.40
1406 4239 5.804692 TTTCATGGCGTACGTGATTAATT 57.195 34.783 17.90 0.00 44.23 1.40
1407 4240 5.804692 TTCATGGCGTACGTGATTAATTT 57.195 34.783 17.90 0.00 44.23 1.82
1408 4241 5.804692 TCATGGCGTACGTGATTAATTTT 57.195 34.783 17.90 0.00 40.12 1.82
1409 4242 6.184580 TCATGGCGTACGTGATTAATTTTT 57.815 33.333 17.90 0.00 40.12 1.94
1819 4652 6.013085 CGATTCGTTCGTGTTCATGTAATTT 58.987 36.000 0.00 0.00 43.01 1.82
1831 4664 9.037737 GTGTTCATGTAATTTATCTTACGGCTA 57.962 33.333 0.00 0.00 34.90 3.93
1894 4729 1.202268 ACTATACTTGTCGCGAGTGCC 60.202 52.381 10.24 0.00 38.08 5.01
1895 4730 0.248336 TATACTTGTCGCGAGTGCCG 60.248 55.000 10.24 0.00 38.08 5.69
1896 4731 2.884087 ATACTTGTCGCGAGTGCCGG 62.884 60.000 10.24 0.00 38.08 6.13
1913 4748 3.433319 GCGACGAGCTGGATCCTA 58.567 61.111 14.23 0.00 44.04 2.94
1914 4749 1.008309 GCGACGAGCTGGATCCTAC 60.008 63.158 14.23 4.81 44.04 3.18
1915 4750 1.448922 GCGACGAGCTGGATCCTACT 61.449 60.000 14.23 10.13 44.04 2.57
1916 4751 1.025812 CGACGAGCTGGATCCTACTT 58.974 55.000 14.23 0.00 0.00 2.24
1917 4752 2.219458 CGACGAGCTGGATCCTACTTA 58.781 52.381 14.23 0.00 0.00 2.24
1918 4753 2.617308 CGACGAGCTGGATCCTACTTAA 59.383 50.000 14.23 0.00 0.00 1.85
1919 4754 3.548415 CGACGAGCTGGATCCTACTTAAC 60.548 52.174 14.23 4.96 0.00 2.01
1920 4755 3.633065 GACGAGCTGGATCCTACTTAACT 59.367 47.826 14.23 0.00 0.00 2.24
1921 4756 3.633065 ACGAGCTGGATCCTACTTAACTC 59.367 47.826 14.23 7.96 0.00 3.01
1922 4757 3.632604 CGAGCTGGATCCTACTTAACTCA 59.367 47.826 14.23 0.00 0.00 3.41
1923 4758 4.279671 CGAGCTGGATCCTACTTAACTCAT 59.720 45.833 14.23 0.00 0.00 2.90
1924 4759 5.221342 CGAGCTGGATCCTACTTAACTCATT 60.221 44.000 14.23 0.00 0.00 2.57
1925 4760 6.567602 AGCTGGATCCTACTTAACTCATTT 57.432 37.500 14.23 0.00 0.00 2.32
1926 4761 6.587273 AGCTGGATCCTACTTAACTCATTTC 58.413 40.000 14.23 0.00 0.00 2.17
1927 4762 6.156949 AGCTGGATCCTACTTAACTCATTTCA 59.843 38.462 14.23 0.00 0.00 2.69
2062 4915 3.625649 GATCCTAGGATTGCTGGATCC 57.374 52.381 25.25 4.20 45.45 3.36
2080 4933 2.331893 CGTACGTACGTGGGGTGGA 61.332 63.158 33.95 5.88 44.13 4.02
2082 4935 1.678635 TACGTACGTGGGGTGGAGG 60.679 63.158 30.25 0.00 0.00 4.30
2094 4955 3.521937 TGGGGTGGAGGAACAAATACTAG 59.478 47.826 0.00 0.00 0.00 2.57
2096 4957 4.718276 GGGGTGGAGGAACAAATACTAGTA 59.282 45.833 4.77 4.77 0.00 1.82
2099 4960 6.406737 GGGTGGAGGAACAAATACTAGTACTC 60.407 46.154 4.31 5.41 0.00 2.59
2100 4961 6.406737 GGTGGAGGAACAAATACTAGTACTCC 60.407 46.154 19.44 19.44 40.03 3.85
2137 4998 3.377346 TGCAGAGAAAGACAGAGTGAC 57.623 47.619 0.00 0.00 0.00 3.67
2307 5192 6.220930 TGATGTAACGCAGAGTTATTATCCC 58.779 40.000 15.35 0.12 45.90 3.85
2393 5278 4.464244 TGTTCTGTCAAGGAGAGTAGATGG 59.536 45.833 0.00 0.00 0.00 3.51
2431 5318 8.645487 GGAGTAAATATAATCTTACCGAAAGCG 58.355 37.037 0.00 0.00 34.97 4.68
2459 5347 8.045176 TGTACAATCTATCTATCACGATCTGG 57.955 38.462 0.00 0.00 0.00 3.86
2489 5406 0.321564 CCTGGATGGTTCGAGCACAA 60.322 55.000 0.53 0.00 0.00 3.33
2491 5408 0.396435 TGGATGGTTCGAGCACAAGT 59.604 50.000 0.53 0.00 0.00 3.16
2501 5438 1.264288 CGAGCACAAGTTCAAGTTCCC 59.736 52.381 0.00 0.00 0.00 3.97
2518 5455 1.559065 CCCCTTTCCCGGTTAGCAGA 61.559 60.000 0.00 0.00 0.00 4.26
2527 5464 3.580895 TCCCGGTTAGCAGATGCATTATA 59.419 43.478 0.00 0.00 45.16 0.98
2528 5465 3.684788 CCCGGTTAGCAGATGCATTATAC 59.315 47.826 0.00 0.00 45.16 1.47
2529 5466 4.563580 CCCGGTTAGCAGATGCATTATACT 60.564 45.833 0.00 0.00 45.16 2.12
2530 5467 5.337250 CCCGGTTAGCAGATGCATTATACTA 60.337 44.000 0.00 0.00 45.16 1.82
2536 5473 6.957984 AGCAGATGCATTATACTAACATCG 57.042 37.500 0.00 0.00 45.16 3.84
2541 5478 8.642885 CAGATGCATTATACTAACATCGAACTC 58.357 37.037 0.00 0.00 41.53 3.01
2564 5501 1.741993 CCAAACTGACAAAACTCGCG 58.258 50.000 0.00 0.00 0.00 5.87
2565 5502 1.112459 CAAACTGACAAAACTCGCGC 58.888 50.000 0.00 0.00 0.00 6.86
2567 5504 0.304705 AACTGACAAAACTCGCGCTG 59.695 50.000 5.56 0.00 0.00 5.18
2569 5506 0.111089 CTGACAAAACTCGCGCTGTC 60.111 55.000 15.90 15.90 38.91 3.51
2570 5507 1.204312 GACAAAACTCGCGCTGTCC 59.796 57.895 12.72 0.00 33.57 4.02
2572 5509 2.110213 AAAACTCGCGCTGTCCCA 59.890 55.556 5.56 0.00 0.00 4.37
2573 5510 1.302511 AAAACTCGCGCTGTCCCAT 60.303 52.632 5.56 0.00 0.00 4.00
2574 5511 0.889186 AAAACTCGCGCTGTCCCATT 60.889 50.000 5.56 0.00 0.00 3.16
2575 5512 0.036765 AAACTCGCGCTGTCCCATTA 60.037 50.000 5.56 0.00 0.00 1.90
2576 5513 0.739813 AACTCGCGCTGTCCCATTAC 60.740 55.000 5.56 0.00 0.00 1.89
2577 5514 1.883084 CTCGCGCTGTCCCATTACC 60.883 63.158 5.56 0.00 0.00 2.85
2578 5515 2.125310 CGCGCTGTCCCATTACCA 60.125 61.111 5.56 0.00 0.00 3.25
2580 5517 1.302383 CGCGCTGTCCCATTACCAAA 61.302 55.000 5.56 0.00 0.00 3.28
2585 5527 4.202111 GCGCTGTCCCATTACCAAATTTAT 60.202 41.667 0.00 0.00 0.00 1.40
2614 5556 2.919228 TCTCATCGAGATCGTGAGGAA 58.081 47.619 22.58 10.78 42.28 3.36
2664 5638 7.175104 ACCTATTCCATGTAAAAGATGTGTGT 58.825 34.615 0.00 0.00 0.00 3.72
2675 5649 8.031864 TGTAAAAGATGTGTGTGTGTCATTTTT 58.968 29.630 0.00 0.00 30.82 1.94
2677 5651 5.581126 AGATGTGTGTGTGTCATTTTTGT 57.419 34.783 0.00 0.00 0.00 2.83
2734 5710 7.597369 TCATAGTAATTTCGATGGGTCAATACG 59.403 37.037 5.56 0.00 0.00 3.06
2740 5716 0.657840 GATGGGTCAATACGTGCTGC 59.342 55.000 0.00 0.00 0.00 5.25
2755 5731 1.635487 TGCTGCCTTATTCACCCTCTT 59.365 47.619 0.00 0.00 0.00 2.85
2900 5876 2.584970 CCGCCGCTATTTCTCGCA 60.585 61.111 0.00 0.00 0.00 5.10
3332 6308 1.524849 GATCCCGCTCTTTCTGGCC 60.525 63.158 0.00 0.00 0.00 5.36
3410 6386 1.227118 GCTCGTGCTAGGCTTCTCC 60.227 63.158 1.41 0.00 36.03 3.71
3914 6904 6.348950 CCGATCAAGCAGTTTGTGGTATTTAA 60.349 38.462 0.00 0.00 35.15 1.52
3996 6986 4.331168 GCACTGTCCAACTAAGATTGCTAG 59.669 45.833 0.00 0.00 0.00 3.42
3998 6988 5.349817 CACTGTCCAACTAAGATTGCTAGTG 59.650 44.000 0.00 0.00 32.32 2.74
4102 7092 8.436200 GGTGATATTATCAATAGCGAGTGAAAC 58.564 37.037 7.93 0.00 41.69 2.78
4117 7109 5.697848 AGTGAAACGCGTCATTAGTATTC 57.302 39.130 14.44 10.80 45.86 1.75
4177 7169 5.998454 AGAAGTGATCGATTTAAGCCATG 57.002 39.130 0.00 0.00 0.00 3.66
4189 7181 7.065324 TCGATTTAAGCCATGAACTCGTTTATT 59.935 33.333 0.00 0.00 0.00 1.40
4223 7215 4.524328 ACAGCCTAAACTGATTTCAAAGGG 59.476 41.667 0.00 0.00 40.25 3.95
4224 7216 4.082026 CAGCCTAAACTGATTTCAAAGGGG 60.082 45.833 0.00 0.00 40.25 4.79
4263 7255 4.141959 CCATGACAACCAAAACTTTGACCT 60.142 41.667 3.72 0.00 40.55 3.85
4266 7258 4.398044 TGACAACCAAAACTTTGACCTCTC 59.602 41.667 3.72 0.00 40.55 3.20
4275 7267 1.344763 CTTTGACCTCTCGGGAACTGT 59.655 52.381 0.00 0.00 38.76 3.55
4279 7271 1.619332 GACCTCTCGGGAACTGTCTTT 59.381 52.381 2.83 0.00 38.76 2.52
4304 7296 8.834749 TTTTTACTAAGTGTTTTTGGCAAACT 57.165 26.923 13.10 4.14 0.00 2.66
4305 7297 7.820044 TTTACTAAGTGTTTTTGGCAAACTG 57.180 32.000 13.10 0.00 0.00 3.16
4307 7299 5.407502 ACTAAGTGTTTTTGGCAAACTGAC 58.592 37.500 13.10 11.99 0.00 3.51
4308 7300 3.245518 AGTGTTTTTGGCAAACTGACC 57.754 42.857 13.10 6.46 0.00 4.02
4309 7301 1.923864 GTGTTTTTGGCAAACTGACCG 59.076 47.619 13.10 0.00 0.00 4.79
4311 7303 2.190161 GTTTTTGGCAAACTGACCGTC 58.810 47.619 13.10 0.00 0.00 4.79
4323 7315 4.453454 ACCGTCAGGGCATCTACA 57.547 55.556 0.00 0.00 43.47 2.74
4324 7316 2.678786 ACCGTCAGGGCATCTACAA 58.321 52.632 0.00 0.00 43.47 2.41
4325 7317 1.204146 ACCGTCAGGGCATCTACAAT 58.796 50.000 0.00 0.00 43.47 2.71
4326 7318 1.134401 ACCGTCAGGGCATCTACAATG 60.134 52.381 0.00 0.00 43.47 2.82
4327 7319 1.586422 CGTCAGGGCATCTACAATGG 58.414 55.000 0.00 0.00 0.00 3.16
4328 7320 1.138859 CGTCAGGGCATCTACAATGGA 59.861 52.381 0.00 0.00 0.00 3.41
4329 7321 2.804572 CGTCAGGGCATCTACAATGGAG 60.805 54.545 0.00 0.00 0.00 3.86
4330 7322 2.435805 GTCAGGGCATCTACAATGGAGA 59.564 50.000 0.00 0.00 0.00 3.71
4331 7323 2.702478 TCAGGGCATCTACAATGGAGAG 59.298 50.000 0.25 0.00 0.00 3.20
4332 7324 2.053244 AGGGCATCTACAATGGAGAGG 58.947 52.381 2.23 2.23 0.00 3.69
4334 7326 1.506493 GCATCTACAATGGAGAGGCG 58.494 55.000 16.66 0.74 40.48 5.52
4335 7327 1.506493 CATCTACAATGGAGAGGCGC 58.494 55.000 0.25 0.00 0.00 6.53
4336 7328 0.394565 ATCTACAATGGAGAGGCGCC 59.605 55.000 21.89 21.89 0.00 6.53
4337 7329 0.687757 TCTACAATGGAGAGGCGCCT 60.688 55.000 33.48 33.48 0.00 5.52
4338 7330 0.531532 CTACAATGGAGAGGCGCCTG 60.532 60.000 38.41 21.42 0.00 4.85
4339 7331 1.264749 TACAATGGAGAGGCGCCTGT 61.265 55.000 38.41 33.39 0.00 4.00
4340 7332 1.264749 ACAATGGAGAGGCGCCTGTA 61.265 55.000 38.41 17.48 0.00 2.74
4341 7333 0.811616 CAATGGAGAGGCGCCTGTAC 60.812 60.000 38.41 33.10 0.00 2.90
4342 7334 2.298158 AATGGAGAGGCGCCTGTACG 62.298 60.000 38.41 0.00 0.00 3.67
4343 7335 4.208686 GGAGAGGCGCCTGTACGG 62.209 72.222 38.41 0.00 0.00 4.02
4344 7336 4.208686 GAGAGGCGCCTGTACGGG 62.209 72.222 38.41 17.09 0.00 5.28
4346 7338 4.814294 GAGGCGCCTGTACGGGTG 62.814 72.222 38.41 27.05 39.64 4.61
4350 7342 2.574929 CGCCTGTACGGGTGCTTA 59.425 61.111 21.02 0.00 0.00 3.09
4351 7343 1.518572 CGCCTGTACGGGTGCTTAG 60.519 63.158 21.02 3.18 0.00 2.18
4352 7344 1.895238 GCCTGTACGGGTGCTTAGA 59.105 57.895 21.95 0.00 0.00 2.10
4353 7345 0.464452 GCCTGTACGGGTGCTTAGAT 59.536 55.000 21.95 0.00 0.00 1.98
4354 7346 1.684983 GCCTGTACGGGTGCTTAGATA 59.315 52.381 21.95 0.00 0.00 1.98
4355 7347 2.101917 GCCTGTACGGGTGCTTAGATAA 59.898 50.000 21.95 0.00 0.00 1.75
4356 7348 3.244112 GCCTGTACGGGTGCTTAGATAAT 60.244 47.826 21.95 0.00 0.00 1.28
4357 7349 4.557205 CCTGTACGGGTGCTTAGATAATC 58.443 47.826 13.06 0.00 0.00 1.75
4358 7350 4.227538 CTGTACGGGTGCTTAGATAATCG 58.772 47.826 0.00 0.00 0.00 3.34
4359 7351 3.884693 TGTACGGGTGCTTAGATAATCGA 59.115 43.478 0.00 0.00 0.00 3.59
4360 7352 4.338964 TGTACGGGTGCTTAGATAATCGAA 59.661 41.667 0.00 0.00 0.00 3.71
4361 7353 4.395959 ACGGGTGCTTAGATAATCGAAA 57.604 40.909 0.00 0.00 0.00 3.46
4362 7354 4.761975 ACGGGTGCTTAGATAATCGAAAA 58.238 39.130 0.00 0.00 0.00 2.29
4363 7355 5.180271 ACGGGTGCTTAGATAATCGAAAAA 58.820 37.500 0.00 0.00 0.00 1.94
4387 7379 9.651913 AAAAATAATTATGGAGTTTGCGTCAAT 57.348 25.926 0.00 0.00 0.00 2.57
4388 7380 8.633075 AAATAATTATGGAGTTTGCGTCAATG 57.367 30.769 0.00 0.00 0.00 2.82
4389 7381 5.643379 AATTATGGAGTTTGCGTCAATGT 57.357 34.783 0.00 0.00 0.00 2.71
4390 7382 6.751514 AATTATGGAGTTTGCGTCAATGTA 57.248 33.333 0.00 0.00 0.00 2.29
4391 7383 5.794687 TTATGGAGTTTGCGTCAATGTAG 57.205 39.130 0.00 0.00 0.00 2.74
4392 7384 2.422597 TGGAGTTTGCGTCAATGTAGG 58.577 47.619 0.00 0.00 0.00 3.18
4393 7385 2.037902 TGGAGTTTGCGTCAATGTAGGA 59.962 45.455 0.00 0.00 0.00 2.94
4394 7386 2.673368 GGAGTTTGCGTCAATGTAGGAG 59.327 50.000 0.00 0.00 0.00 3.69
4395 7387 3.326747 GAGTTTGCGTCAATGTAGGAGT 58.673 45.455 0.00 0.00 0.00 3.85
4396 7388 3.326747 AGTTTGCGTCAATGTAGGAGTC 58.673 45.455 0.00 0.00 0.00 3.36
4397 7389 3.006967 AGTTTGCGTCAATGTAGGAGTCT 59.993 43.478 0.00 0.00 0.00 3.24
4398 7390 2.654749 TGCGTCAATGTAGGAGTCTG 57.345 50.000 0.00 0.00 0.00 3.51
4399 7391 1.893137 TGCGTCAATGTAGGAGTCTGT 59.107 47.619 0.00 0.00 0.00 3.41
4400 7392 2.299013 TGCGTCAATGTAGGAGTCTGTT 59.701 45.455 0.00 0.00 0.00 3.16
4401 7393 3.508402 TGCGTCAATGTAGGAGTCTGTTA 59.492 43.478 0.00 0.00 0.00 2.41
4402 7394 3.858238 GCGTCAATGTAGGAGTCTGTTAC 59.142 47.826 0.00 0.00 0.00 2.50
4403 7395 4.421948 CGTCAATGTAGGAGTCTGTTACC 58.578 47.826 0.00 0.00 0.00 2.85
4404 7396 4.677250 CGTCAATGTAGGAGTCTGTTACCC 60.677 50.000 0.00 0.00 0.00 3.69
4405 7397 3.773119 TCAATGTAGGAGTCTGTTACCCC 59.227 47.826 0.00 0.00 0.00 4.95
4406 7398 3.484953 ATGTAGGAGTCTGTTACCCCA 57.515 47.619 0.00 0.00 0.00 4.96
4407 7399 3.263369 TGTAGGAGTCTGTTACCCCAA 57.737 47.619 0.00 0.00 0.00 4.12
4408 7400 2.901839 TGTAGGAGTCTGTTACCCCAAC 59.098 50.000 0.00 0.00 37.67 3.77
4409 7401 0.974383 AGGAGTCTGTTACCCCAACG 59.026 55.000 0.00 0.00 40.26 4.10
4410 7402 0.672711 GGAGTCTGTTACCCCAACGC 60.673 60.000 0.00 0.00 40.26 4.84
4411 7403 0.034337 GAGTCTGTTACCCCAACGCA 59.966 55.000 0.00 0.00 40.26 5.24
4412 7404 0.250166 AGTCTGTTACCCCAACGCAC 60.250 55.000 0.00 0.00 40.26 5.34
4413 7405 1.301087 TCTGTTACCCCAACGCACG 60.301 57.895 0.00 0.00 40.26 5.34
4414 7406 2.280933 TGTTACCCCAACGCACGG 60.281 61.111 0.00 0.00 40.26 4.94
4415 7407 2.030862 GTTACCCCAACGCACGGA 59.969 61.111 0.00 0.00 0.00 4.69
4416 7408 2.030862 TTACCCCAACGCACGGAC 59.969 61.111 0.00 0.00 0.00 4.79
4417 7409 3.862394 TTACCCCAACGCACGGACG 62.862 63.158 0.00 0.00 39.50 4.79
4421 7413 4.728102 CCAACGCACGGACGCCTA 62.728 66.667 0.00 0.00 36.19 3.93
4422 7414 2.508439 CAACGCACGGACGCCTAT 60.508 61.111 0.00 0.00 36.19 2.57
4423 7415 2.098233 CAACGCACGGACGCCTATT 61.098 57.895 0.00 0.00 36.19 1.73
4424 7416 1.808390 AACGCACGGACGCCTATTC 60.808 57.895 0.00 0.00 36.19 1.75
4425 7417 2.104331 CGCACGGACGCCTATTCT 59.896 61.111 0.00 0.00 0.00 2.40
4426 7418 1.357690 CGCACGGACGCCTATTCTA 59.642 57.895 0.00 0.00 0.00 2.10
4427 7419 0.660595 CGCACGGACGCCTATTCTAG 60.661 60.000 0.00 0.00 0.00 2.43
4428 7420 0.940047 GCACGGACGCCTATTCTAGC 60.940 60.000 0.00 0.00 0.00 3.42
4435 7427 2.417339 CGCCTATTCTAGCGCTAACA 57.583 50.000 19.37 8.16 46.50 2.41
4436 7428 2.739292 CGCCTATTCTAGCGCTAACAA 58.261 47.619 19.37 14.15 46.50 2.83
4437 7429 3.120792 CGCCTATTCTAGCGCTAACAAA 58.879 45.455 19.37 13.07 46.50 2.83
4438 7430 3.060473 CGCCTATTCTAGCGCTAACAAAC 60.060 47.826 19.37 4.24 46.50 2.93
4439 7431 4.120589 GCCTATTCTAGCGCTAACAAACT 58.879 43.478 19.37 3.25 0.00 2.66
4440 7432 4.571176 GCCTATTCTAGCGCTAACAAACTT 59.429 41.667 19.37 2.58 0.00 2.66
4441 7433 5.751990 GCCTATTCTAGCGCTAACAAACTTA 59.248 40.000 19.37 3.56 0.00 2.24
4442 7434 6.424207 GCCTATTCTAGCGCTAACAAACTTAT 59.576 38.462 19.37 5.72 0.00 1.73
4443 7435 7.041984 GCCTATTCTAGCGCTAACAAACTTATT 60.042 37.037 19.37 1.24 0.00 1.40
4444 7436 8.827677 CCTATTCTAGCGCTAACAAACTTATTT 58.172 33.333 19.37 0.58 0.00 1.40
4447 7439 8.944212 TTCTAGCGCTAACAAACTTATTTTTC 57.056 30.769 19.37 0.00 0.00 2.29
4448 7440 7.524065 TCTAGCGCTAACAAACTTATTTTTCC 58.476 34.615 19.37 0.00 0.00 3.13
4449 7441 6.327279 AGCGCTAACAAACTTATTTTTCCT 57.673 33.333 8.99 0.00 0.00 3.36
4450 7442 6.379386 AGCGCTAACAAACTTATTTTTCCTC 58.621 36.000 8.99 0.00 0.00 3.71
4451 7443 5.283012 GCGCTAACAAACTTATTTTTCCTCG 59.717 40.000 0.00 0.00 0.00 4.63
4452 7444 6.368213 CGCTAACAAACTTATTTTTCCTCGT 58.632 36.000 0.00 0.00 0.00 4.18
4453 7445 7.512297 CGCTAACAAACTTATTTTTCCTCGTA 58.488 34.615 0.00 0.00 0.00 3.43
4454 7446 8.011106 CGCTAACAAACTTATTTTTCCTCGTAA 58.989 33.333 0.00 0.00 0.00 3.18
4455 7447 9.667989 GCTAACAAACTTATTTTTCCTCGTAAA 57.332 29.630 0.00 0.00 0.00 2.01
4481 7473 9.868160 AAAATATCCATACCTCCTCCTAAAAAG 57.132 33.333 0.00 0.00 0.00 2.27
4482 7474 5.913946 ATCCATACCTCCTCCTAAAAAGG 57.086 43.478 0.00 0.00 35.05 3.11
4483 7475 4.045022 TCCATACCTCCTCCTAAAAAGGG 58.955 47.826 0.00 0.00 34.46 3.95
4484 7476 3.786450 CCATACCTCCTCCTAAAAAGGGT 59.214 47.826 0.00 0.00 34.46 4.34
4485 7477 4.141459 CCATACCTCCTCCTAAAAAGGGTC 60.141 50.000 0.00 0.00 34.46 4.46
4486 7478 1.907255 ACCTCCTCCTAAAAAGGGTCG 59.093 52.381 0.00 0.00 34.46 4.79
4487 7479 1.907255 CCTCCTCCTAAAAAGGGTCGT 59.093 52.381 0.00 0.00 34.46 4.34
4488 7480 3.102204 CCTCCTCCTAAAAAGGGTCGTA 58.898 50.000 0.00 0.00 34.46 3.43
4489 7481 3.118847 CCTCCTCCTAAAAAGGGTCGTAC 60.119 52.174 0.00 0.00 34.46 3.67
4490 7482 2.493278 TCCTCCTAAAAAGGGTCGTACG 59.507 50.000 9.53 9.53 34.46 3.67
4491 7483 2.493278 CCTCCTAAAAAGGGTCGTACGA 59.507 50.000 15.28 15.28 0.00 3.43
4492 7484 3.056607 CCTCCTAAAAAGGGTCGTACGAA 60.057 47.826 21.39 0.10 0.00 3.85
4493 7485 3.913089 TCCTAAAAAGGGTCGTACGAAC 58.087 45.455 25.02 25.02 0.00 3.95
4494 7486 3.320541 TCCTAAAAAGGGTCGTACGAACA 59.679 43.478 32.40 11.82 32.53 3.18
4495 7487 3.676646 CCTAAAAAGGGTCGTACGAACAG 59.323 47.826 32.40 20.01 32.53 3.16
4496 7488 3.457610 AAAAAGGGTCGTACGAACAGA 57.542 42.857 32.40 2.14 32.53 3.41
4497 7489 3.457610 AAAAGGGTCGTACGAACAGAA 57.542 42.857 32.40 1.32 32.53 3.02
4498 7490 3.457610 AAAGGGTCGTACGAACAGAAA 57.542 42.857 32.40 0.50 32.53 2.52
4499 7491 3.457610 AAGGGTCGTACGAACAGAAAA 57.542 42.857 32.40 0.00 32.53 2.29
4500 7492 3.457610 AGGGTCGTACGAACAGAAAAA 57.542 42.857 32.40 0.00 32.53 1.94
4501 7493 3.387397 AGGGTCGTACGAACAGAAAAAG 58.613 45.455 32.40 0.00 32.53 2.27
4502 7494 3.068590 AGGGTCGTACGAACAGAAAAAGA 59.931 43.478 32.40 0.00 32.53 2.52
4503 7495 3.803778 GGGTCGTACGAACAGAAAAAGAA 59.196 43.478 32.40 0.00 32.53 2.52
4504 7496 4.084693 GGGTCGTACGAACAGAAAAAGAAG 60.085 45.833 32.40 0.00 32.53 2.85
4505 7497 4.084693 GGTCGTACGAACAGAAAAAGAAGG 60.085 45.833 27.73 0.00 0.00 3.46
4506 7498 4.741676 GTCGTACGAACAGAAAAAGAAGGA 59.258 41.667 21.39 0.00 0.00 3.36
4507 7499 5.232838 GTCGTACGAACAGAAAAAGAAGGAA 59.767 40.000 21.39 0.00 0.00 3.36
4508 7500 5.461078 TCGTACGAACAGAAAAAGAAGGAAG 59.539 40.000 17.11 0.00 0.00 3.46
4509 7501 4.553756 ACGAACAGAAAAAGAAGGAAGC 57.446 40.909 0.00 0.00 0.00 3.86
4510 7502 3.002348 ACGAACAGAAAAAGAAGGAAGCG 59.998 43.478 0.00 0.00 0.00 4.68
4511 7503 3.300857 GAACAGAAAAAGAAGGAAGCGC 58.699 45.455 0.00 0.00 0.00 5.92
4512 7504 1.609072 ACAGAAAAAGAAGGAAGCGCC 59.391 47.619 2.29 0.00 0.00 6.53
4528 7520 4.803426 CCTGACGACTCGGCTGGC 62.803 72.222 16.46 0.00 46.04 4.85
4529 7521 4.056125 CTGACGACTCGGCTGGCA 62.056 66.667 5.74 0.00 35.04 4.92
4530 7522 3.362399 CTGACGACTCGGCTGGCAT 62.362 63.158 5.74 0.00 35.04 4.40
4531 7523 2.583593 GACGACTCGGCTGGCATC 60.584 66.667 2.98 0.00 0.00 3.91
4532 7524 4.498520 ACGACTCGGCTGGCATCG 62.499 66.667 14.94 14.94 38.71 3.84
4533 7525 4.193334 CGACTCGGCTGGCATCGA 62.193 66.667 12.25 11.52 34.77 3.59
4534 7526 2.419198 GACTCGGCTGGCATCGAT 59.581 61.111 12.26 0.00 34.77 3.59
4535 7527 1.953138 GACTCGGCTGGCATCGATG 60.953 63.158 21.27 21.27 34.77 3.84
4549 7541 4.517952 CATCGATGCTAGACAGAATCCT 57.482 45.455 13.37 0.00 33.63 3.24
4550 7542 5.635417 CATCGATGCTAGACAGAATCCTA 57.365 43.478 13.37 0.00 33.63 2.94
4551 7543 5.639757 CATCGATGCTAGACAGAATCCTAG 58.360 45.833 13.37 0.00 33.63 3.02
4552 7544 4.974399 TCGATGCTAGACAGAATCCTAGA 58.026 43.478 0.00 0.00 33.63 2.43
4553 7545 5.377478 TCGATGCTAGACAGAATCCTAGAA 58.623 41.667 0.00 0.00 33.63 2.10
4554 7546 6.007076 TCGATGCTAGACAGAATCCTAGAAT 58.993 40.000 0.00 0.00 33.63 2.40
4555 7547 6.150307 TCGATGCTAGACAGAATCCTAGAATC 59.850 42.308 0.00 0.00 41.48 2.52
4556 7548 5.697473 TGCTAGACAGAATCCTAGAATCG 57.303 43.478 0.00 0.00 35.55 3.34
4557 7549 5.377478 TGCTAGACAGAATCCTAGAATCGA 58.623 41.667 0.00 0.00 35.55 3.59
4558 7550 5.828328 TGCTAGACAGAATCCTAGAATCGAA 59.172 40.000 0.00 0.00 35.55 3.71
4559 7551 6.146898 GCTAGACAGAATCCTAGAATCGAAC 58.853 44.000 0.00 0.00 35.55 3.95
4560 7552 5.176407 AGACAGAATCCTAGAATCGAACG 57.824 43.478 0.00 0.00 0.00 3.95
4561 7553 4.036971 AGACAGAATCCTAGAATCGAACGG 59.963 45.833 0.00 0.00 0.00 4.44
4562 7554 3.068307 ACAGAATCCTAGAATCGAACGGG 59.932 47.826 0.00 0.00 0.00 5.28
4563 7555 3.318275 CAGAATCCTAGAATCGAACGGGA 59.682 47.826 0.00 1.50 0.00 5.14
4564 7556 4.021894 CAGAATCCTAGAATCGAACGGGAT 60.022 45.833 13.04 13.04 35.40 3.85
4565 7557 4.589374 AGAATCCTAGAATCGAACGGGATT 59.411 41.667 21.80 21.80 43.50 3.01
4566 7558 4.957684 ATCCTAGAATCGAACGGGATTT 57.042 40.909 13.04 0.00 36.79 2.17
4567 7559 4.054780 TCCTAGAATCGAACGGGATTTG 57.945 45.455 0.00 0.00 36.79 2.32
4568 7560 3.702548 TCCTAGAATCGAACGGGATTTGA 59.297 43.478 0.00 0.00 36.79 2.69
4569 7561 4.344102 TCCTAGAATCGAACGGGATTTGAT 59.656 41.667 0.00 0.00 42.45 2.57
4570 7562 4.686554 CCTAGAATCGAACGGGATTTGATC 59.313 45.833 0.00 0.00 40.11 2.92
4571 7563 4.137116 AGAATCGAACGGGATTTGATCA 57.863 40.909 0.00 0.00 40.11 2.92
4572 7564 4.513442 AGAATCGAACGGGATTTGATCAA 58.487 39.130 3.38 3.38 40.11 2.57
4573 7565 4.941263 AGAATCGAACGGGATTTGATCAAA 59.059 37.500 22.52 22.52 40.11 2.69
4574 7566 5.414454 AGAATCGAACGGGATTTGATCAAAA 59.586 36.000 23.91 8.65 40.11 2.44
4575 7567 4.413495 TCGAACGGGATTTGATCAAAAC 57.587 40.909 23.91 20.53 33.56 2.43
4576 7568 3.120477 TCGAACGGGATTTGATCAAAACG 60.120 43.478 27.16 27.16 33.56 3.60
4577 7569 3.498082 GAACGGGATTTGATCAAAACGG 58.502 45.455 29.68 25.70 33.48 4.44
4578 7570 1.201414 ACGGGATTTGATCAAAACGGC 59.799 47.619 29.68 19.00 33.48 5.68
4579 7571 1.469079 CGGGATTTGATCAAAACGGCC 60.469 52.381 23.91 20.06 33.56 6.13
4580 7572 1.548269 GGGATTTGATCAAAACGGCCA 59.452 47.619 23.91 0.30 33.56 5.36
4581 7573 2.417243 GGGATTTGATCAAAACGGCCAG 60.417 50.000 23.91 0.00 33.56 4.85
4582 7574 2.417243 GGATTTGATCAAAACGGCCAGG 60.417 50.000 23.91 0.00 33.56 4.45
4583 7575 1.988293 TTTGATCAAAACGGCCAGGA 58.012 45.000 18.45 0.00 0.00 3.86
4584 7576 1.988293 TTGATCAAAACGGCCAGGAA 58.012 45.000 5.45 0.00 0.00 3.36
4585 7577 1.243902 TGATCAAAACGGCCAGGAAC 58.756 50.000 2.24 0.00 0.00 3.62
4586 7578 1.243902 GATCAAAACGGCCAGGAACA 58.756 50.000 2.24 0.00 0.00 3.18
4587 7579 1.611491 GATCAAAACGGCCAGGAACAA 59.389 47.619 2.24 0.00 0.00 2.83
4588 7580 1.475403 TCAAAACGGCCAGGAACAAA 58.525 45.000 2.24 0.00 0.00 2.83
4589 7581 1.825474 TCAAAACGGCCAGGAACAAAA 59.175 42.857 2.24 0.00 0.00 2.44
4590 7582 1.930503 CAAAACGGCCAGGAACAAAAC 59.069 47.619 2.24 0.00 0.00 2.43
4591 7583 0.462375 AAACGGCCAGGAACAAAACC 59.538 50.000 2.24 0.00 0.00 3.27
4592 7584 1.396607 AACGGCCAGGAACAAAACCC 61.397 55.000 2.24 0.00 0.00 4.11
4593 7585 1.530655 CGGCCAGGAACAAAACCCT 60.531 57.895 2.24 0.00 0.00 4.34
4597 7589 1.659794 CAGGAACAAAACCCTGGCG 59.340 57.895 0.00 0.00 44.68 5.69
4598 7590 1.106944 CAGGAACAAAACCCTGGCGT 61.107 55.000 0.00 0.00 44.68 5.68
4599 7591 0.396556 AGGAACAAAACCCTGGCGTT 60.397 50.000 0.00 0.00 0.00 4.84
4600 7592 0.249280 GGAACAAAACCCTGGCGTTG 60.249 55.000 2.02 1.99 0.00 4.10
4601 7593 0.249280 GAACAAAACCCTGGCGTTGG 60.249 55.000 2.02 1.60 0.00 3.77
4625 7617 4.514569 GCGCCCGCGTTGTACATG 62.515 66.667 11.18 0.00 42.09 3.21
4626 7618 4.514569 CGCCCGCGTTGTACATGC 62.515 66.667 4.92 9.85 34.35 4.06
4627 7619 4.174129 GCCCGCGTTGTACATGCC 62.174 66.667 4.92 0.00 33.21 4.40
4628 7620 3.505184 CCCGCGTTGTACATGCCC 61.505 66.667 4.92 0.00 33.21 5.36
4656 7648 7.119699 CACAAGCTAAACTAATGTCATTGGAGA 59.880 37.037 15.18 0.24 0.00 3.71
4707 7699 1.525995 CACACCTTTGGGCGTGAGT 60.526 57.895 0.00 0.00 45.61 3.41
4708 7700 0.250124 CACACCTTTGGGCGTGAGTA 60.250 55.000 0.00 0.00 45.61 2.59
4709 7701 0.250166 ACACCTTTGGGCGTGAGTAC 60.250 55.000 0.00 0.00 35.63 2.73
4710 7702 0.953960 CACCTTTGGGCGTGAGTACC 60.954 60.000 0.00 0.00 35.63 3.34
4711 7703 1.373435 CCTTTGGGCGTGAGTACCA 59.627 57.895 0.00 0.00 38.23 3.25
4718 7710 2.730672 GCGTGAGTACCAGCTTGCG 61.731 63.158 0.00 0.00 0.00 4.85
4725 7717 1.014564 GTACCAGCTTGCGAGACACC 61.015 60.000 4.70 0.00 0.00 4.16
4730 7722 1.181741 AGCTTGCGAGACACCAGAGA 61.182 55.000 4.70 0.00 0.00 3.10
4742 7734 2.633481 ACACCAGAGAAGTAAGTGGTCC 59.367 50.000 0.00 0.00 41.52 4.46
4755 7747 1.140161 TGGTCCGCGTACATACTGC 59.860 57.895 4.92 0.00 0.00 4.40
4756 7748 1.590792 GGTCCGCGTACATACTGCC 60.591 63.158 4.92 0.00 0.00 4.85
4757 7749 1.590792 GTCCGCGTACATACTGCCC 60.591 63.158 4.92 0.00 0.00 5.36
4758 7750 2.657296 CCGCGTACATACTGCCCG 60.657 66.667 4.92 0.00 0.00 6.13
4759 7751 2.657296 CGCGTACATACTGCCCGG 60.657 66.667 0.00 0.00 0.00 5.73
4760 7752 2.809706 GCGTACATACTGCCCGGA 59.190 61.111 0.73 0.00 0.00 5.14
4761 7753 1.590792 GCGTACATACTGCCCGGAC 60.591 63.158 0.73 0.00 0.00 4.79
4762 7754 1.066918 CGTACATACTGCCCGGACC 59.933 63.158 0.73 0.00 0.00 4.46
4763 7755 1.669049 CGTACATACTGCCCGGACCA 61.669 60.000 0.73 0.00 0.00 4.02
4764 7756 0.538118 GTACATACTGCCCGGACCAA 59.462 55.000 0.73 0.00 0.00 3.67
4765 7757 1.140252 GTACATACTGCCCGGACCAAT 59.860 52.381 0.73 0.00 0.00 3.16
4766 7758 0.180406 ACATACTGCCCGGACCAATC 59.820 55.000 0.73 0.00 0.00 2.67
4767 7759 0.469917 CATACTGCCCGGACCAATCT 59.530 55.000 0.73 0.00 0.00 2.40
4768 7760 1.134098 CATACTGCCCGGACCAATCTT 60.134 52.381 0.73 0.00 0.00 2.40
4769 7761 1.868713 TACTGCCCGGACCAATCTTA 58.131 50.000 0.73 0.00 0.00 2.10
4770 7762 0.252197 ACTGCCCGGACCAATCTTAC 59.748 55.000 0.73 0.00 0.00 2.34
4771 7763 0.251916 CTGCCCGGACCAATCTTACA 59.748 55.000 0.73 0.00 0.00 2.41
4772 7764 0.916086 TGCCCGGACCAATCTTACAT 59.084 50.000 0.73 0.00 0.00 2.29
4773 7765 1.308998 GCCCGGACCAATCTTACATG 58.691 55.000 0.73 0.00 0.00 3.21
4774 7766 1.134220 GCCCGGACCAATCTTACATGA 60.134 52.381 0.73 0.00 0.00 3.07
4775 7767 2.561569 CCCGGACCAATCTTACATGAC 58.438 52.381 0.73 0.00 0.00 3.06
4776 7768 2.561569 CCGGACCAATCTTACATGACC 58.438 52.381 0.00 0.00 0.00 4.02
4777 7769 2.201732 CGGACCAATCTTACATGACCG 58.798 52.381 0.00 0.00 33.16 4.79
4778 7770 2.159156 CGGACCAATCTTACATGACCGA 60.159 50.000 0.00 0.00 37.98 4.69
4779 7771 3.195661 GGACCAATCTTACATGACCGAC 58.804 50.000 0.00 0.00 0.00 4.79
4780 7772 3.369052 GGACCAATCTTACATGACCGACA 60.369 47.826 0.00 0.00 0.00 4.35
4781 7773 3.861840 ACCAATCTTACATGACCGACAG 58.138 45.455 0.00 0.00 0.00 3.51
4782 7774 3.513912 ACCAATCTTACATGACCGACAGA 59.486 43.478 0.00 0.00 0.00 3.41
4783 7775 3.865745 CCAATCTTACATGACCGACAGAC 59.134 47.826 0.00 0.00 0.00 3.51
4784 7776 4.494484 CAATCTTACATGACCGACAGACA 58.506 43.478 0.00 0.00 0.00 3.41
4785 7777 5.111989 CAATCTTACATGACCGACAGACAT 58.888 41.667 0.00 0.00 0.00 3.06
4786 7778 4.110036 TCTTACATGACCGACAGACATG 57.890 45.455 0.00 0.00 44.42 3.21
4787 7779 2.293677 TACATGACCGACAGACATGC 57.706 50.000 0.00 0.00 43.21 4.06
4788 7780 0.321346 ACATGACCGACAGACATGCA 59.679 50.000 0.00 0.00 43.21 3.96
4789 7781 1.270785 ACATGACCGACAGACATGCAA 60.271 47.619 0.00 0.00 43.21 4.08
4790 7782 1.129251 CATGACCGACAGACATGCAAC 59.871 52.381 0.00 0.00 35.72 4.17
4791 7783 0.392706 TGACCGACAGACATGCAACT 59.607 50.000 0.00 0.00 0.00 3.16
4792 7784 1.616374 TGACCGACAGACATGCAACTA 59.384 47.619 0.00 0.00 0.00 2.24
4793 7785 2.263077 GACCGACAGACATGCAACTAG 58.737 52.381 0.00 0.00 0.00 2.57
4794 7786 1.618837 ACCGACAGACATGCAACTAGT 59.381 47.619 0.00 0.00 0.00 2.57
4795 7787 2.037251 ACCGACAGACATGCAACTAGTT 59.963 45.455 1.12 1.12 0.00 2.24
4796 7788 3.067106 CCGACAGACATGCAACTAGTTT 58.933 45.455 5.07 0.00 0.00 2.66
4797 7789 3.498397 CCGACAGACATGCAACTAGTTTT 59.502 43.478 5.07 0.00 0.00 2.43
4798 7790 4.457810 CGACAGACATGCAACTAGTTTTG 58.542 43.478 5.07 6.88 0.00 2.44
4810 7802 4.783764 ACTAGTTTTGCATAAAGGTGGC 57.216 40.909 0.00 0.00 0.00 5.01
4811 7803 4.407365 ACTAGTTTTGCATAAAGGTGGCT 58.593 39.130 0.00 0.00 0.00 4.75
4812 7804 3.665745 AGTTTTGCATAAAGGTGGCTG 57.334 42.857 0.00 0.00 0.00 4.85
4813 7805 2.299867 AGTTTTGCATAAAGGTGGCTGG 59.700 45.455 0.00 0.00 0.00 4.85
4814 7806 0.607620 TTTGCATAAAGGTGGCTGGC 59.392 50.000 0.00 0.00 0.00 4.85
4815 7807 1.594194 TTGCATAAAGGTGGCTGGCG 61.594 55.000 0.00 0.00 0.00 5.69
4816 7808 2.774799 GCATAAAGGTGGCTGGCGG 61.775 63.158 0.00 0.00 0.00 6.13
4817 7809 1.378514 CATAAAGGTGGCTGGCGGT 60.379 57.895 0.00 0.00 0.00 5.68
4818 7810 0.965363 CATAAAGGTGGCTGGCGGTT 60.965 55.000 0.00 0.00 0.00 4.44
4819 7811 0.965363 ATAAAGGTGGCTGGCGGTTG 60.965 55.000 0.00 0.00 0.00 3.77
4820 7812 2.346284 TAAAGGTGGCTGGCGGTTGT 62.346 55.000 0.00 0.00 0.00 3.32
4821 7813 4.643387 AGGTGGCTGGCGGTTGTC 62.643 66.667 0.00 0.00 0.00 3.18
4822 7814 4.643387 GGTGGCTGGCGGTTGTCT 62.643 66.667 0.00 0.00 0.00 3.41
4823 7815 3.357079 GTGGCTGGCGGTTGTCTG 61.357 66.667 0.00 0.00 0.00 3.51
4824 7816 3.872603 TGGCTGGCGGTTGTCTGT 61.873 61.111 0.00 0.00 0.00 3.41
4825 7817 2.594592 GGCTGGCGGTTGTCTGTT 60.595 61.111 0.00 0.00 0.00 3.16
4826 7818 2.193536 GGCTGGCGGTTGTCTGTTT 61.194 57.895 0.00 0.00 0.00 2.83
4827 7819 1.282875 GCTGGCGGTTGTCTGTTTC 59.717 57.895 0.00 0.00 0.00 2.78
4828 7820 1.166531 GCTGGCGGTTGTCTGTTTCT 61.167 55.000 0.00 0.00 0.00 2.52
4829 7821 0.868406 CTGGCGGTTGTCTGTTTCTC 59.132 55.000 0.00 0.00 0.00 2.87
4830 7822 0.534203 TGGCGGTTGTCTGTTTCTCC 60.534 55.000 0.00 0.00 0.00 3.71
4831 7823 0.250338 GGCGGTTGTCTGTTTCTCCT 60.250 55.000 0.00 0.00 0.00 3.69
4832 7824 1.001633 GGCGGTTGTCTGTTTCTCCTA 59.998 52.381 0.00 0.00 0.00 2.94
4833 7825 2.067013 GCGGTTGTCTGTTTCTCCTAC 58.933 52.381 0.00 0.00 0.00 3.18
4834 7826 2.288886 GCGGTTGTCTGTTTCTCCTACT 60.289 50.000 0.00 0.00 0.00 2.57
4835 7827 3.802675 GCGGTTGTCTGTTTCTCCTACTT 60.803 47.826 0.00 0.00 0.00 2.24
4836 7828 4.377897 CGGTTGTCTGTTTCTCCTACTTT 58.622 43.478 0.00 0.00 0.00 2.66
4837 7829 5.535333 CGGTTGTCTGTTTCTCCTACTTTA 58.465 41.667 0.00 0.00 0.00 1.85
4838 7830 5.404667 CGGTTGTCTGTTTCTCCTACTTTAC 59.595 44.000 0.00 0.00 0.00 2.01
4839 7831 6.522946 GGTTGTCTGTTTCTCCTACTTTACT 58.477 40.000 0.00 0.00 0.00 2.24
4840 7832 6.990939 GGTTGTCTGTTTCTCCTACTTTACTT 59.009 38.462 0.00 0.00 0.00 2.24
4841 7833 7.041984 GGTTGTCTGTTTCTCCTACTTTACTTG 60.042 40.741 0.00 0.00 0.00 3.16
4842 7834 7.356089 TGTCTGTTTCTCCTACTTTACTTGA 57.644 36.000 0.00 0.00 0.00 3.02
4843 7835 7.788026 TGTCTGTTTCTCCTACTTTACTTGAA 58.212 34.615 0.00 0.00 0.00 2.69
4844 7836 8.429641 TGTCTGTTTCTCCTACTTTACTTGAAT 58.570 33.333 0.00 0.00 0.00 2.57
4845 7837 8.927721 GTCTGTTTCTCCTACTTTACTTGAATC 58.072 37.037 0.00 0.00 0.00 2.52
4846 7838 7.813148 TCTGTTTCTCCTACTTTACTTGAATCG 59.187 37.037 0.00 0.00 0.00 3.34
4847 7839 6.872020 TGTTTCTCCTACTTTACTTGAATCGG 59.128 38.462 0.00 0.00 0.00 4.18
4848 7840 6.845758 TTCTCCTACTTTACTTGAATCGGA 57.154 37.500 0.00 0.00 0.00 4.55
4849 7841 7.419711 TTCTCCTACTTTACTTGAATCGGAT 57.580 36.000 0.00 0.00 0.00 4.18
4850 7842 7.419711 TCTCCTACTTTACTTGAATCGGATT 57.580 36.000 2.19 2.19 0.00 3.01
4851 7843 7.848128 TCTCCTACTTTACTTGAATCGGATTT 58.152 34.615 4.47 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 17 4.458295 TCGTAGATGGTTTCTTTCGTCTCT 59.542 41.667 0.00 0.00 35.79 3.10
18 20 3.611549 GGTCGTAGATGGTTTCTTTCGTC 59.388 47.826 0.00 0.00 40.67 4.20
36 38 1.423721 CTCACGGACATGCATGGTCG 61.424 60.000 29.41 29.37 36.12 4.79
80 82 9.944663 TTTAATATTTCGTATGACCAATCTTGC 57.055 29.630 0.00 0.00 0.00 4.01
109 111 3.309848 CCCCAATAGGTCCACATCCTTTT 60.310 47.826 0.00 0.00 36.60 2.27
177 179 2.965147 GCTCGTGCGTTGCAATGGA 61.965 57.895 19.93 14.92 41.47 3.41
178 180 2.502510 GCTCGTGCGTTGCAATGG 60.503 61.111 19.93 8.34 41.47 3.16
180 182 1.230635 AAGAGCTCGTGCGTTGCAAT 61.231 50.000 8.37 0.00 41.47 3.56
188 190 6.701432 TTTTACTAGTAAAAGAGCTCGTGC 57.299 37.500 28.77 0.07 39.34 5.34
191 193 9.798994 TTAGGATTTTACTAGTAAAAGAGCTCG 57.201 33.333 32.91 0.00 44.95 5.03
236 238 4.058817 GTCACCAAATCCTATCCGTGATC 58.941 47.826 0.00 0.00 33.25 2.92
408 3051 9.975218 ATGTTGTGTAAATATTCTACTCCCTTT 57.025 29.630 0.00 0.00 0.00 3.11
409 3052 9.975218 AATGTTGTGTAAATATTCTACTCCCTT 57.025 29.630 0.00 0.00 0.00 3.95
410 3053 9.614792 GAATGTTGTGTAAATATTCTACTCCCT 57.385 33.333 0.00 0.00 0.00 4.20
436 3079 2.884367 ATTGCCCGTGCGATTTGG 59.116 55.556 0.00 0.00 38.51 3.28
461 3108 1.697982 AGTTTTTCGCTCCCCTGTAGT 59.302 47.619 0.00 0.00 0.00 2.73
491 3138 1.014352 GGCCACGATATTGTTCGCTT 58.986 50.000 0.00 0.00 42.82 4.68
492 3139 0.814010 GGGCCACGATATTGTTCGCT 60.814 55.000 4.39 0.00 42.82 4.93
535 3211 2.431057 TCGCCATCCCTTCTTCTTCTAC 59.569 50.000 0.00 0.00 0.00 2.59
538 3214 1.946745 CTCGCCATCCCTTCTTCTTC 58.053 55.000 0.00 0.00 0.00 2.87
546 3222 1.764054 AGCTAAGCTCGCCATCCCT 60.764 57.895 4.50 0.00 30.62 4.20
547 3223 1.596477 CAGCTAAGCTCGCCATCCC 60.596 63.158 4.50 0.00 36.40 3.85
548 3224 2.250237 GCAGCTAAGCTCGCCATCC 61.250 63.158 4.50 0.00 36.40 3.51
549 3225 0.883814 ATGCAGCTAAGCTCGCCATC 60.884 55.000 4.50 0.00 36.40 3.51
635 3412 0.602638 TGATTGGGAGCACGTGACAC 60.603 55.000 22.23 14.00 0.00 3.67
637 3414 0.729116 CATGATTGGGAGCACGTGAC 59.271 55.000 22.23 12.16 0.00 3.67
686 3470 1.642037 CGAGTCAGCAACATGCCAGG 61.642 60.000 0.00 0.00 46.52 4.45
743 3527 0.981183 TTCACACCTACATCGGCCTT 59.019 50.000 0.00 0.00 0.00 4.35
747 3531 0.459585 CCGGTTCACACCTACATCGG 60.460 60.000 0.00 0.00 41.64 4.18
774 3558 0.376852 GAGCACACGCACACAAAGAA 59.623 50.000 0.00 0.00 42.27 2.52
775 3559 0.461870 AGAGCACACGCACACAAAGA 60.462 50.000 0.00 0.00 42.27 2.52
776 3560 0.041839 GAGAGCACACGCACACAAAG 60.042 55.000 0.00 0.00 42.27 2.77
777 3561 1.761244 CGAGAGCACACGCACACAAA 61.761 55.000 0.00 0.00 42.27 2.83
787 3571 1.899814 ACCTGATTAACCGAGAGCACA 59.100 47.619 0.00 0.00 0.00 4.57
789 3573 5.353394 AATTACCTGATTAACCGAGAGCA 57.647 39.130 0.00 0.00 0.00 4.26
1203 4011 1.402968 GTAGAAGGTGCATGCATGGTG 59.597 52.381 25.64 5.00 0.00 4.17
1276 4100 2.159612 CGATGAATTGCCGCATATCTGG 60.160 50.000 0.00 0.00 0.00 3.86
1277 4101 3.113325 CGATGAATTGCCGCATATCTG 57.887 47.619 0.00 0.00 0.00 2.90
1301 4125 1.256895 GCGCGCTTAATCGATGTACAA 59.743 47.619 26.67 0.00 0.00 2.41
1302 4126 0.850217 GCGCGCTTAATCGATGTACA 59.150 50.000 26.67 0.00 0.00 2.90
1306 4130 2.091152 AAAAGCGCGCTTAATCGATG 57.909 45.000 42.98 0.00 34.84 3.84
1330 4154 8.904834 ACACGAGTAGTCTTCATGTAATAAGAT 58.095 33.333 0.00 0.00 34.43 2.40
1331 4155 8.277490 ACACGAGTAGTCTTCATGTAATAAGA 57.723 34.615 0.00 0.00 0.00 2.10
1332 4156 9.999009 TTACACGAGTAGTCTTCATGTAATAAG 57.001 33.333 0.00 0.00 0.00 1.73
1335 4159 9.871238 AATTTACACGAGTAGTCTTCATGTAAT 57.129 29.630 11.30 0.00 32.71 1.89
1406 4239 1.353022 ACCAGGTAGATCCGGCAAAAA 59.647 47.619 0.00 0.00 41.99 1.94
1407 4240 0.988832 ACCAGGTAGATCCGGCAAAA 59.011 50.000 0.00 0.00 41.99 2.44
1408 4241 0.988832 AACCAGGTAGATCCGGCAAA 59.011 50.000 0.00 0.00 41.99 3.68
1409 4242 0.988832 AAACCAGGTAGATCCGGCAA 59.011 50.000 0.00 0.00 41.99 4.52
1410 4243 0.251916 CAAACCAGGTAGATCCGGCA 59.748 55.000 0.00 0.00 41.99 5.69
1831 4664 9.984190 TCGCCAAAAAGGTAAGTTAATTAATTT 57.016 25.926 5.91 10.39 40.61 1.82
1894 4729 4.933064 GGATCCAGCTCGTCGCCG 62.933 72.222 6.95 0.00 40.39 6.46
1895 4730 2.194212 TAGGATCCAGCTCGTCGCC 61.194 63.158 15.82 0.00 40.39 5.54
1896 4731 1.008309 GTAGGATCCAGCTCGTCGC 60.008 63.158 15.82 0.00 39.57 5.19
1897 4732 1.025812 AAGTAGGATCCAGCTCGTCG 58.974 55.000 15.82 0.00 0.00 5.12
1898 4733 3.633065 AGTTAAGTAGGATCCAGCTCGTC 59.367 47.826 15.82 5.41 0.00 4.20
1899 4734 3.633065 GAGTTAAGTAGGATCCAGCTCGT 59.367 47.826 15.82 2.18 0.00 4.18
1900 4735 3.632604 TGAGTTAAGTAGGATCCAGCTCG 59.367 47.826 15.82 0.00 0.00 5.03
1901 4736 5.799827 ATGAGTTAAGTAGGATCCAGCTC 57.200 43.478 15.82 10.01 0.00 4.09
1902 4737 6.156949 TGAAATGAGTTAAGTAGGATCCAGCT 59.843 38.462 15.82 8.44 0.00 4.24
1903 4738 6.349300 TGAAATGAGTTAAGTAGGATCCAGC 58.651 40.000 15.82 5.96 0.00 4.85
1904 4739 6.481644 GCTGAAATGAGTTAAGTAGGATCCAG 59.518 42.308 15.82 0.00 0.00 3.86
1905 4740 6.349300 GCTGAAATGAGTTAAGTAGGATCCA 58.651 40.000 15.82 0.00 0.00 3.41
1906 4741 5.760743 GGCTGAAATGAGTTAAGTAGGATCC 59.239 44.000 2.48 2.48 0.00 3.36
1907 4742 6.481644 CAGGCTGAAATGAGTTAAGTAGGATC 59.518 42.308 9.42 0.00 0.00 3.36
1908 4743 6.069963 ACAGGCTGAAATGAGTTAAGTAGGAT 60.070 38.462 23.66 0.00 0.00 3.24
1909 4744 5.248477 ACAGGCTGAAATGAGTTAAGTAGGA 59.752 40.000 23.66 0.00 0.00 2.94
1910 4745 5.491982 ACAGGCTGAAATGAGTTAAGTAGG 58.508 41.667 23.66 0.00 0.00 3.18
1911 4746 7.981789 TCATACAGGCTGAAATGAGTTAAGTAG 59.018 37.037 23.66 0.00 0.00 2.57
1912 4747 7.847096 TCATACAGGCTGAAATGAGTTAAGTA 58.153 34.615 23.66 0.00 0.00 2.24
1913 4748 6.711277 TCATACAGGCTGAAATGAGTTAAGT 58.289 36.000 23.66 0.00 0.00 2.24
1914 4749 7.637229 CATCATACAGGCTGAAATGAGTTAAG 58.363 38.462 27.93 17.50 31.04 1.85
1915 4750 6.038603 GCATCATACAGGCTGAAATGAGTTAA 59.961 38.462 27.93 14.64 31.04 2.01
1916 4751 5.528690 GCATCATACAGGCTGAAATGAGTTA 59.471 40.000 27.93 14.90 31.04 2.24
1917 4752 4.337555 GCATCATACAGGCTGAAATGAGTT 59.662 41.667 27.93 17.42 31.04 3.01
1918 4753 3.881688 GCATCATACAGGCTGAAATGAGT 59.118 43.478 27.93 18.92 31.04 3.41
1919 4754 4.135306 AGCATCATACAGGCTGAAATGAG 58.865 43.478 27.93 22.59 36.34 2.90
1920 4755 4.160642 AGCATCATACAGGCTGAAATGA 57.839 40.909 27.11 27.11 36.34 2.57
1921 4756 4.818005 TGTAGCATCATACAGGCTGAAATG 59.182 41.667 23.66 21.95 38.55 2.32
1922 4757 5.039920 TGTAGCATCATACAGGCTGAAAT 57.960 39.130 23.66 11.32 38.55 2.17
1923 4758 4.486125 TGTAGCATCATACAGGCTGAAA 57.514 40.909 23.66 9.24 38.55 2.69
1924 4759 4.694760 ATGTAGCATCATACAGGCTGAA 57.305 40.909 23.66 3.76 38.96 3.02
1925 4760 4.503817 GGAATGTAGCATCATACAGGCTGA 60.504 45.833 23.66 5.22 38.96 4.26
1926 4761 3.750130 GGAATGTAGCATCATACAGGCTG 59.250 47.826 14.16 14.16 38.96 4.85
1927 4762 3.649981 AGGAATGTAGCATCATACAGGCT 59.350 43.478 0.00 0.00 38.96 4.58
2080 4933 9.490083 AATAGTGGAGTACTAGTATTTGTTCCT 57.510 33.333 5.75 0.00 44.69 3.36
2094 4955 7.148255 TGCAATCATGTTTGAATAGTGGAGTAC 60.148 37.037 18.58 0.00 34.96 2.73
2096 4957 5.711506 TGCAATCATGTTTGAATAGTGGAGT 59.288 36.000 18.58 0.00 34.96 3.85
2099 4960 6.094464 TCTCTGCAATCATGTTTGAATAGTGG 59.906 38.462 18.58 10.56 34.96 4.00
2100 4961 7.080353 TCTCTGCAATCATGTTTGAATAGTG 57.920 36.000 18.58 12.98 34.96 2.74
2111 4972 4.936411 ACTCTGTCTTTCTCTGCAATCATG 59.064 41.667 0.00 0.00 0.00 3.07
2150 5014 7.353525 TGATTAATCTCTCTCTCTCTCAAGGT 58.646 38.462 16.24 0.00 0.00 3.50
2221 5101 8.510132 TCGATTCGTATTCGCTTTATAATTCA 57.490 30.769 5.89 0.00 36.56 2.57
2307 5192 2.079158 AGTGCCAACGAATCATGACTG 58.921 47.619 0.00 0.00 0.00 3.51
2393 5278 9.727859 GATTATATTTACTCCCTCCTTTCCTTC 57.272 37.037 0.00 0.00 0.00 3.46
2459 5347 1.213926 ACCATCCAGGCATTCTCCTTC 59.786 52.381 0.00 0.00 43.14 3.46
2489 5406 1.202891 CGGGAAAGGGGAACTTGAACT 60.203 52.381 0.00 0.00 39.96 3.01
2491 5408 0.111639 CCGGGAAAGGGGAACTTGAA 59.888 55.000 0.00 0.00 39.96 2.69
2501 5438 1.668419 CATCTGCTAACCGGGAAAGG 58.332 55.000 6.32 0.00 37.30 3.11
2518 5455 6.586463 CCGAGTTCGATGTTAGTATAATGCAT 59.414 38.462 2.59 0.00 43.02 3.96
2527 5464 0.175073 GGCCCGAGTTCGATGTTAGT 59.825 55.000 2.59 0.00 43.02 2.24
2528 5465 0.174845 TGGCCCGAGTTCGATGTTAG 59.825 55.000 0.00 0.00 43.02 2.34
2529 5466 0.609151 TTGGCCCGAGTTCGATGTTA 59.391 50.000 0.00 0.00 43.02 2.41
2530 5467 0.250553 TTTGGCCCGAGTTCGATGTT 60.251 50.000 0.00 0.00 43.02 2.71
2536 5473 0.534203 TGTCAGTTTGGCCCGAGTTC 60.534 55.000 0.00 0.00 0.00 3.01
2541 5478 0.744281 AGTTTTGTCAGTTTGGCCCG 59.256 50.000 0.00 0.00 0.00 6.13
2567 5504 8.695456 ACATGAGAATAAATTTGGTAATGGGAC 58.305 33.333 0.00 0.00 0.00 4.46
2569 5506 9.533253 GAACATGAGAATAAATTTGGTAATGGG 57.467 33.333 0.00 0.00 0.00 4.00
2575 5512 8.400947 CGATGAGAACATGAGAATAAATTTGGT 58.599 33.333 0.00 0.00 36.82 3.67
2576 5513 8.615211 TCGATGAGAACATGAGAATAAATTTGG 58.385 33.333 0.00 0.00 36.82 3.28
2577 5514 9.647679 CTCGATGAGAACATGAGAATAAATTTG 57.352 33.333 0.00 0.00 36.82 2.32
2578 5515 9.605275 TCTCGATGAGAACATGAGAATAAATTT 57.395 29.630 0.00 0.00 37.53 1.82
2580 5517 9.421806 GATCTCGATGAGAACATGAGAATAAAT 57.578 33.333 0.00 0.00 42.27 1.40
2585 5527 4.336713 ACGATCTCGATGAGAACATGAGAA 59.663 41.667 6.60 0.00 42.27 2.87
2644 5587 5.592282 ACACACACACATCTTTTACATGGAA 59.408 36.000 0.00 0.00 0.00 3.53
2664 5638 5.850557 ACCATGAGAACAAAAATGACACA 57.149 34.783 0.00 0.00 0.00 3.72
2675 5649 4.009675 GACAGGCAAATACCATGAGAACA 58.990 43.478 0.00 0.00 0.00 3.18
2677 5651 4.263462 ACTGACAGGCAAATACCATGAGAA 60.263 41.667 7.51 0.00 0.00 2.87
2734 5710 1.065126 AGAGGGTGAATAAGGCAGCAC 60.065 52.381 0.00 0.00 35.57 4.40
2755 5731 3.348119 TGACGTGGCAGGCATATAAAAA 58.652 40.909 7.17 0.00 0.00 1.94
3085 6061 1.977544 CTTGTCGACCGGGTCCTCT 60.978 63.158 21.06 0.00 0.00 3.69
3410 6386 2.278013 GTAGGCGACGCTCGAAGG 60.278 66.667 20.77 0.00 43.74 3.46
3996 6986 8.314021 TGATATCACATCATTGTATAGGGTCAC 58.686 37.037 0.00 0.00 33.76 3.67
3998 6988 9.896645 AATGATATCACATCATTGTATAGGGTC 57.103 33.333 7.78 0.00 44.39 4.46
4102 7092 6.086896 CAGTATGAGTGAATACTAATGACGCG 59.913 42.308 3.53 3.53 40.61 6.01
4139 7131 7.273164 CGATCACTTCTTAAGCTATATCTGCTG 59.727 40.741 0.00 0.00 41.03 4.41
4218 7210 4.450976 GTCAGTTTGCAATTTTCCCCTTT 58.549 39.130 0.00 0.00 0.00 3.11
4223 7215 4.448732 GTCATGGTCAGTTTGCAATTTTCC 59.551 41.667 0.00 0.67 0.00 3.13
4224 7216 5.049167 TGTCATGGTCAGTTTGCAATTTTC 58.951 37.500 0.00 0.00 0.00 2.29
4279 7271 8.713271 CAGTTTGCCAAAAACACTTAGTAAAAA 58.287 29.630 0.00 0.00 32.81 1.94
4286 7278 4.675671 CGGTCAGTTTGCCAAAAACACTTA 60.676 41.667 0.00 0.00 32.81 2.24
4287 7279 3.595173 GGTCAGTTTGCCAAAAACACTT 58.405 40.909 0.00 0.00 32.81 3.16
4290 7282 1.546476 ACGGTCAGTTTGCCAAAAACA 59.454 42.857 0.00 0.00 32.81 2.83
4292 7284 1.819288 TGACGGTCAGTTTGCCAAAAA 59.181 42.857 6.76 0.00 0.00 1.94
4297 7289 1.966451 CCCTGACGGTCAGTTTGCC 60.966 63.158 30.32 0.00 42.80 4.52
4298 7290 2.617274 GCCCTGACGGTCAGTTTGC 61.617 63.158 30.32 25.23 42.80 3.68
4299 7291 0.606401 ATGCCCTGACGGTCAGTTTG 60.606 55.000 30.32 20.92 42.80 2.93
4301 7293 1.194781 AGATGCCCTGACGGTCAGTT 61.195 55.000 30.32 15.87 42.80 3.16
4303 7295 0.103208 GTAGATGCCCTGACGGTCAG 59.897 60.000 27.29 27.29 43.91 3.51
4304 7296 0.613572 TGTAGATGCCCTGACGGTCA 60.614 55.000 10.88 10.88 0.00 4.02
4305 7297 0.535335 TTGTAGATGCCCTGACGGTC 59.465 55.000 0.00 0.00 0.00 4.79
4307 7299 1.586422 CATTGTAGATGCCCTGACGG 58.414 55.000 0.00 0.00 0.00 4.79
4308 7300 1.138859 TCCATTGTAGATGCCCTGACG 59.861 52.381 0.00 0.00 0.00 4.35
4309 7301 2.435805 TCTCCATTGTAGATGCCCTGAC 59.564 50.000 0.00 0.00 0.00 3.51
4311 7303 2.224475 CCTCTCCATTGTAGATGCCCTG 60.224 54.545 0.00 0.00 0.00 4.45
4313 7305 1.544314 GCCTCTCCATTGTAGATGCCC 60.544 57.143 0.00 0.00 30.91 5.36
4314 7306 1.875576 CGCCTCTCCATTGTAGATGCC 60.876 57.143 1.90 0.00 32.79 4.40
4316 7308 1.506493 GCGCCTCTCCATTGTAGATG 58.494 55.000 0.00 0.00 0.00 2.90
4317 7309 0.394565 GGCGCCTCTCCATTGTAGAT 59.605 55.000 22.15 0.00 0.00 1.98
4318 7310 0.687757 AGGCGCCTCTCCATTGTAGA 60.688 55.000 27.08 0.00 0.00 2.59
4319 7311 0.531532 CAGGCGCCTCTCCATTGTAG 60.532 60.000 30.29 7.44 0.00 2.74
4320 7312 1.264749 ACAGGCGCCTCTCCATTGTA 61.265 55.000 30.29 0.00 0.00 2.41
4321 7313 1.264749 TACAGGCGCCTCTCCATTGT 61.265 55.000 30.29 22.80 0.00 2.71
4322 7314 0.811616 GTACAGGCGCCTCTCCATTG 60.812 60.000 30.29 17.61 0.00 2.82
4323 7315 1.522569 GTACAGGCGCCTCTCCATT 59.477 57.895 30.29 9.22 0.00 3.16
4324 7316 2.786495 CGTACAGGCGCCTCTCCAT 61.786 63.158 30.29 12.46 0.00 3.41
4325 7317 3.449227 CGTACAGGCGCCTCTCCA 61.449 66.667 30.29 9.05 0.00 3.86
4326 7318 4.208686 CCGTACAGGCGCCTCTCC 62.209 72.222 30.29 15.89 0.00 3.71
4327 7319 4.208686 CCCGTACAGGCGCCTCTC 62.209 72.222 30.29 18.40 39.21 3.20
4329 7321 4.814294 CACCCGTACAGGCGCCTC 62.814 72.222 30.29 15.59 39.21 4.70
4332 7324 3.652539 TAAGCACCCGTACAGGCGC 62.653 63.158 0.00 0.00 39.21 6.53
4333 7325 1.518572 CTAAGCACCCGTACAGGCG 60.519 63.158 0.00 0.00 39.21 5.52
4334 7326 0.464452 ATCTAAGCACCCGTACAGGC 59.536 55.000 0.00 0.00 39.21 4.85
4335 7327 4.557205 GATTATCTAAGCACCCGTACAGG 58.443 47.826 0.00 0.00 40.63 4.00
4336 7328 4.023450 TCGATTATCTAAGCACCCGTACAG 60.023 45.833 0.00 0.00 0.00 2.74
4337 7329 3.884693 TCGATTATCTAAGCACCCGTACA 59.115 43.478 0.00 0.00 0.00 2.90
4338 7330 4.494350 TCGATTATCTAAGCACCCGTAC 57.506 45.455 0.00 0.00 0.00 3.67
4339 7331 5.518848 TTTCGATTATCTAAGCACCCGTA 57.481 39.130 0.00 0.00 0.00 4.02
4340 7332 4.395959 TTTCGATTATCTAAGCACCCGT 57.604 40.909 0.00 0.00 0.00 5.28
4341 7333 5.728351 TTTTTCGATTATCTAAGCACCCG 57.272 39.130 0.00 0.00 0.00 5.28
4361 7353 9.651913 ATTGACGCAAACTCCATAATTATTTTT 57.348 25.926 0.00 0.00 0.00 1.94
4362 7354 9.086336 CATTGACGCAAACTCCATAATTATTTT 57.914 29.630 0.00 0.00 0.00 1.82
4363 7355 8.250332 ACATTGACGCAAACTCCATAATTATTT 58.750 29.630 0.00 0.00 0.00 1.40
4364 7356 7.771183 ACATTGACGCAAACTCCATAATTATT 58.229 30.769 0.00 0.00 0.00 1.40
4365 7357 7.333528 ACATTGACGCAAACTCCATAATTAT 57.666 32.000 0.00 0.00 0.00 1.28
4366 7358 6.751514 ACATTGACGCAAACTCCATAATTA 57.248 33.333 0.00 0.00 0.00 1.40
4367 7359 5.643379 ACATTGACGCAAACTCCATAATT 57.357 34.783 0.00 0.00 0.00 1.40
4368 7360 5.296780 CCTACATTGACGCAAACTCCATAAT 59.703 40.000 0.00 0.00 0.00 1.28
4369 7361 4.634004 CCTACATTGACGCAAACTCCATAA 59.366 41.667 0.00 0.00 0.00 1.90
4370 7362 4.081365 TCCTACATTGACGCAAACTCCATA 60.081 41.667 0.00 0.00 0.00 2.74
4371 7363 3.009723 CCTACATTGACGCAAACTCCAT 58.990 45.455 0.00 0.00 0.00 3.41
4372 7364 2.037902 TCCTACATTGACGCAAACTCCA 59.962 45.455 0.00 0.00 0.00 3.86
4373 7365 2.673368 CTCCTACATTGACGCAAACTCC 59.327 50.000 0.00 0.00 0.00 3.85
4374 7366 3.326747 ACTCCTACATTGACGCAAACTC 58.673 45.455 0.00 0.00 0.00 3.01
4375 7367 3.006967 AGACTCCTACATTGACGCAAACT 59.993 43.478 0.00 0.00 0.00 2.66
4376 7368 3.123621 CAGACTCCTACATTGACGCAAAC 59.876 47.826 0.00 0.00 0.00 2.93
4377 7369 3.244078 ACAGACTCCTACATTGACGCAAA 60.244 43.478 0.00 0.00 0.00 3.68
4378 7370 2.299013 ACAGACTCCTACATTGACGCAA 59.701 45.455 0.00 0.00 0.00 4.85
4379 7371 1.893137 ACAGACTCCTACATTGACGCA 59.107 47.619 0.00 0.00 0.00 5.24
4380 7372 2.656560 ACAGACTCCTACATTGACGC 57.343 50.000 0.00 0.00 0.00 5.19
4381 7373 4.421948 GGTAACAGACTCCTACATTGACG 58.578 47.826 0.00 0.00 0.00 4.35
4382 7374 4.382793 GGGGTAACAGACTCCTACATTGAC 60.383 50.000 0.00 0.00 46.63 3.18
4383 7375 3.773119 GGGGTAACAGACTCCTACATTGA 59.227 47.826 0.00 0.00 46.63 2.57
4384 7376 4.138487 GGGGTAACAGACTCCTACATTG 57.862 50.000 0.00 0.00 46.63 2.82
4392 7384 0.034337 TGCGTTGGGGTAACAGACTC 59.966 55.000 0.00 0.00 39.30 3.36
4393 7385 0.250166 GTGCGTTGGGGTAACAGACT 60.250 55.000 0.00 0.00 39.30 3.24
4394 7386 1.562575 CGTGCGTTGGGGTAACAGAC 61.563 60.000 0.00 0.00 39.30 3.51
4395 7387 1.301087 CGTGCGTTGGGGTAACAGA 60.301 57.895 0.00 0.00 39.30 3.41
4396 7388 2.322081 CCGTGCGTTGGGGTAACAG 61.322 63.158 0.00 0.00 39.30 3.16
4397 7389 2.280933 CCGTGCGTTGGGGTAACA 60.281 61.111 0.00 0.00 39.30 2.41
4398 7390 2.030862 TCCGTGCGTTGGGGTAAC 59.969 61.111 0.00 0.00 35.90 2.50
4399 7391 2.030862 GTCCGTGCGTTGGGGTAA 59.969 61.111 0.00 0.00 0.00 2.85
4400 7392 4.360964 CGTCCGTGCGTTGGGGTA 62.361 66.667 0.00 0.00 0.00 3.69
4404 7396 4.728102 TAGGCGTCCGTGCGTTGG 62.728 66.667 0.00 0.00 34.38 3.77
4405 7397 2.020836 GAATAGGCGTCCGTGCGTTG 62.021 60.000 0.00 0.00 34.38 4.10
4406 7398 1.808390 GAATAGGCGTCCGTGCGTT 60.808 57.895 0.00 0.00 34.38 4.84
4407 7399 1.378882 TAGAATAGGCGTCCGTGCGT 61.379 55.000 0.00 0.00 36.79 5.24
4408 7400 0.660595 CTAGAATAGGCGTCCGTGCG 60.661 60.000 0.00 0.00 34.22 5.34
4409 7401 0.940047 GCTAGAATAGGCGTCCGTGC 60.940 60.000 0.00 0.00 39.70 5.34
4410 7402 0.660595 CGCTAGAATAGGCGTCCGTG 60.661 60.000 0.00 0.00 45.34 4.94
4411 7403 1.653115 CGCTAGAATAGGCGTCCGT 59.347 57.895 0.00 0.00 45.34 4.69
4412 7404 4.535425 CGCTAGAATAGGCGTCCG 57.465 61.111 0.00 0.00 45.34 4.79
4417 7409 4.120589 AGTTTGTTAGCGCTAGAATAGGC 58.879 43.478 17.98 6.35 39.70 3.93
4418 7410 7.948278 ATAAGTTTGTTAGCGCTAGAATAGG 57.052 36.000 17.98 0.00 39.70 2.57
4421 7413 9.556030 GAAAAATAAGTTTGTTAGCGCTAGAAT 57.444 29.630 17.98 1.99 0.00 2.40
4422 7414 8.019094 GGAAAAATAAGTTTGTTAGCGCTAGAA 58.981 33.333 17.98 11.68 0.00 2.10
4423 7415 7.389607 AGGAAAAATAAGTTTGTTAGCGCTAGA 59.610 33.333 17.98 5.66 0.00 2.43
4424 7416 7.527457 AGGAAAAATAAGTTTGTTAGCGCTAG 58.473 34.615 17.98 0.00 0.00 3.42
4425 7417 7.443259 AGGAAAAATAAGTTTGTTAGCGCTA 57.557 32.000 14.45 14.45 0.00 4.26
4426 7418 6.327279 AGGAAAAATAAGTTTGTTAGCGCT 57.673 33.333 17.26 17.26 0.00 5.92
4427 7419 5.283012 CGAGGAAAAATAAGTTTGTTAGCGC 59.717 40.000 0.00 0.00 0.00 5.92
4428 7420 6.368213 ACGAGGAAAAATAAGTTTGTTAGCG 58.632 36.000 0.00 0.00 0.00 4.26
4429 7421 9.667989 TTTACGAGGAAAAATAAGTTTGTTAGC 57.332 29.630 0.00 0.00 0.00 3.09
4455 7447 9.868160 CTTTTTAGGAGGAGGTATGGATATTTT 57.132 33.333 0.00 0.00 0.00 1.82
4456 7448 8.448816 CCTTTTTAGGAGGAGGTATGGATATTT 58.551 37.037 0.00 0.00 36.33 1.40
4457 7449 7.018650 CCCTTTTTAGGAGGAGGTATGGATATT 59.981 40.741 0.00 0.00 36.33 1.28
4458 7450 6.505700 CCCTTTTTAGGAGGAGGTATGGATAT 59.494 42.308 0.00 0.00 36.33 1.63
4459 7451 5.850028 CCCTTTTTAGGAGGAGGTATGGATA 59.150 44.000 0.00 0.00 36.33 2.59
4460 7452 4.665483 CCCTTTTTAGGAGGAGGTATGGAT 59.335 45.833 0.00 0.00 36.33 3.41
4461 7453 4.045022 CCCTTTTTAGGAGGAGGTATGGA 58.955 47.826 0.00 0.00 36.33 3.41
4462 7454 3.786450 ACCCTTTTTAGGAGGAGGTATGG 59.214 47.826 0.00 0.00 36.33 2.74
4463 7455 4.443034 CGACCCTTTTTAGGAGGAGGTATG 60.443 50.000 0.00 0.00 36.33 2.39
4464 7456 3.710165 CGACCCTTTTTAGGAGGAGGTAT 59.290 47.826 0.00 0.00 36.33 2.73
4465 7457 3.102204 CGACCCTTTTTAGGAGGAGGTA 58.898 50.000 0.00 0.00 36.33 3.08
4466 7458 1.907255 CGACCCTTTTTAGGAGGAGGT 59.093 52.381 0.00 0.00 36.33 3.85
4467 7459 1.907255 ACGACCCTTTTTAGGAGGAGG 59.093 52.381 0.00 0.00 36.33 4.30
4468 7460 3.428589 CGTACGACCCTTTTTAGGAGGAG 60.429 52.174 10.44 0.00 36.33 3.69
4469 7461 2.493278 CGTACGACCCTTTTTAGGAGGA 59.507 50.000 10.44 0.00 36.33 3.71
4470 7462 2.493278 TCGTACGACCCTTTTTAGGAGG 59.507 50.000 15.28 0.00 0.00 4.30
4471 7463 3.855689 TCGTACGACCCTTTTTAGGAG 57.144 47.619 15.28 0.00 0.00 3.69
4472 7464 3.320541 TGTTCGTACGACCCTTTTTAGGA 59.679 43.478 19.36 0.00 0.00 2.94
4473 7465 3.652274 TGTTCGTACGACCCTTTTTAGG 58.348 45.455 19.36 0.00 0.00 2.69
4474 7466 4.549458 TCTGTTCGTACGACCCTTTTTAG 58.451 43.478 19.36 3.28 0.00 1.85
4475 7467 4.582701 TCTGTTCGTACGACCCTTTTTA 57.417 40.909 19.36 0.00 0.00 1.52
4476 7468 3.457610 TCTGTTCGTACGACCCTTTTT 57.542 42.857 19.36 0.00 0.00 1.94
4477 7469 3.457610 TTCTGTTCGTACGACCCTTTT 57.542 42.857 19.36 0.00 0.00 2.27
4478 7470 3.457610 TTTCTGTTCGTACGACCCTTT 57.542 42.857 19.36 0.00 0.00 3.11
4479 7471 3.457610 TTTTCTGTTCGTACGACCCTT 57.542 42.857 19.36 0.00 0.00 3.95
4480 7472 3.068590 TCTTTTTCTGTTCGTACGACCCT 59.931 43.478 19.36 0.00 0.00 4.34
4481 7473 3.383761 TCTTTTTCTGTTCGTACGACCC 58.616 45.455 19.36 12.19 0.00 4.46
4482 7474 4.084693 CCTTCTTTTTCTGTTCGTACGACC 60.085 45.833 19.36 12.37 0.00 4.79
4483 7475 4.741676 TCCTTCTTTTTCTGTTCGTACGAC 59.258 41.667 19.36 13.59 0.00 4.34
4484 7476 4.935702 TCCTTCTTTTTCTGTTCGTACGA 58.064 39.130 15.28 15.28 0.00 3.43
4485 7477 5.646467 TTCCTTCTTTTTCTGTTCGTACG 57.354 39.130 9.53 9.53 0.00 3.67
4486 7478 5.441543 GCTTCCTTCTTTTTCTGTTCGTAC 58.558 41.667 0.00 0.00 0.00 3.67
4487 7479 4.210537 CGCTTCCTTCTTTTTCTGTTCGTA 59.789 41.667 0.00 0.00 0.00 3.43
4488 7480 3.002348 CGCTTCCTTCTTTTTCTGTTCGT 59.998 43.478 0.00 0.00 0.00 3.85
4489 7481 3.545633 CGCTTCCTTCTTTTTCTGTTCG 58.454 45.455 0.00 0.00 0.00 3.95
4490 7482 3.300857 GCGCTTCCTTCTTTTTCTGTTC 58.699 45.455 0.00 0.00 0.00 3.18
4491 7483 2.034685 GGCGCTTCCTTCTTTTTCTGTT 59.965 45.455 7.64 0.00 0.00 3.16
4492 7484 1.609072 GGCGCTTCCTTCTTTTTCTGT 59.391 47.619 7.64 0.00 0.00 3.41
4493 7485 1.882623 AGGCGCTTCCTTCTTTTTCTG 59.117 47.619 7.64 0.00 44.75 3.02
4494 7486 1.882623 CAGGCGCTTCCTTCTTTTTCT 59.117 47.619 7.64 0.00 44.75 2.52
4495 7487 1.880027 TCAGGCGCTTCCTTCTTTTTC 59.120 47.619 7.64 0.00 44.75 2.29
4496 7488 1.609072 GTCAGGCGCTTCCTTCTTTTT 59.391 47.619 7.64 0.00 44.75 1.94
4497 7489 1.239347 GTCAGGCGCTTCCTTCTTTT 58.761 50.000 7.64 0.00 44.75 2.27
4498 7490 0.951040 CGTCAGGCGCTTCCTTCTTT 60.951 55.000 7.64 0.00 44.75 2.52
4499 7491 1.374758 CGTCAGGCGCTTCCTTCTT 60.375 57.895 7.64 0.00 44.75 2.52
4500 7492 2.262915 CGTCAGGCGCTTCCTTCT 59.737 61.111 7.64 0.00 44.75 2.85
4501 7493 2.095252 GTCGTCAGGCGCTTCCTTC 61.095 63.158 7.64 0.00 44.75 3.46
4502 7494 2.048127 GTCGTCAGGCGCTTCCTT 60.048 61.111 7.64 0.00 44.75 3.36
4504 7496 2.507324 GAGTCGTCAGGCGCTTCC 60.507 66.667 7.64 0.00 41.07 3.46
4505 7497 2.876645 CGAGTCGTCAGGCGCTTC 60.877 66.667 7.64 0.00 41.07 3.86
4506 7498 4.421479 CCGAGTCGTCAGGCGCTT 62.421 66.667 12.31 0.00 41.07 4.68
4511 7503 4.803426 GCCAGCCGAGTCGTCAGG 62.803 72.222 12.31 6.18 0.00 3.86
4512 7504 3.362399 ATGCCAGCCGAGTCGTCAG 62.362 63.158 12.31 0.00 0.00 3.51
4513 7505 3.356639 GATGCCAGCCGAGTCGTCA 62.357 63.158 12.31 1.80 0.00 4.35
4514 7506 2.583593 GATGCCAGCCGAGTCGTC 60.584 66.667 12.31 0.00 0.00 4.20
4515 7507 4.498520 CGATGCCAGCCGAGTCGT 62.499 66.667 12.31 0.00 0.00 4.34
4516 7508 3.490793 ATCGATGCCAGCCGAGTCG 62.491 63.158 5.29 5.29 38.25 4.18
4517 7509 1.953138 CATCGATGCCAGCCGAGTC 60.953 63.158 13.37 0.00 38.25 3.36
4518 7510 2.107750 CATCGATGCCAGCCGAGT 59.892 61.111 13.37 0.00 38.25 4.18
4528 7520 4.517952 AGGATTCTGTCTAGCATCGATG 57.482 45.455 21.27 21.27 28.68 3.84
4529 7521 5.565509 TCTAGGATTCTGTCTAGCATCGAT 58.434 41.667 0.00 0.00 34.52 3.59
4530 7522 4.974399 TCTAGGATTCTGTCTAGCATCGA 58.026 43.478 0.00 0.00 34.52 3.59
4531 7523 5.697473 TTCTAGGATTCTGTCTAGCATCG 57.303 43.478 0.00 0.00 34.52 3.84
4532 7524 6.150307 TCGATTCTAGGATTCTGTCTAGCATC 59.850 42.308 0.00 0.00 34.89 3.91
4533 7525 6.007076 TCGATTCTAGGATTCTGTCTAGCAT 58.993 40.000 0.00 0.00 34.52 3.79
4534 7526 5.377478 TCGATTCTAGGATTCTGTCTAGCA 58.623 41.667 0.00 0.00 34.52 3.49
4535 7527 5.950758 TCGATTCTAGGATTCTGTCTAGC 57.049 43.478 0.00 0.00 34.52 3.42
4536 7528 6.367421 CGTTCGATTCTAGGATTCTGTCTAG 58.633 44.000 0.00 0.00 35.52 2.43
4537 7529 5.238868 CCGTTCGATTCTAGGATTCTGTCTA 59.761 44.000 0.00 0.00 0.00 2.59
4538 7530 4.036971 CCGTTCGATTCTAGGATTCTGTCT 59.963 45.833 0.00 0.00 0.00 3.41
4539 7531 4.291783 CCGTTCGATTCTAGGATTCTGTC 58.708 47.826 0.00 0.00 0.00 3.51
4540 7532 3.068307 CCCGTTCGATTCTAGGATTCTGT 59.932 47.826 0.00 0.00 0.00 3.41
4541 7533 3.318275 TCCCGTTCGATTCTAGGATTCTG 59.682 47.826 0.00 0.00 0.00 3.02
4542 7534 3.563223 TCCCGTTCGATTCTAGGATTCT 58.437 45.455 0.00 0.00 0.00 2.40
4543 7535 4.522722 ATCCCGTTCGATTCTAGGATTC 57.477 45.455 0.00 0.00 29.81 2.52
4544 7536 4.957684 AATCCCGTTCGATTCTAGGATT 57.042 40.909 8.90 8.90 38.87 3.01
4545 7537 4.344102 TCAAATCCCGTTCGATTCTAGGAT 59.656 41.667 0.00 0.00 35.64 3.24
4546 7538 3.702548 TCAAATCCCGTTCGATTCTAGGA 59.297 43.478 0.00 0.00 31.14 2.94
4547 7539 4.054780 TCAAATCCCGTTCGATTCTAGG 57.945 45.455 0.00 0.00 31.14 3.02
4548 7540 5.289595 TGATCAAATCCCGTTCGATTCTAG 58.710 41.667 0.00 0.00 31.14 2.43
4549 7541 5.270893 TGATCAAATCCCGTTCGATTCTA 57.729 39.130 0.00 0.00 31.14 2.10
4550 7542 4.137116 TGATCAAATCCCGTTCGATTCT 57.863 40.909 0.00 0.00 31.14 2.40
4551 7543 4.875544 TTGATCAAATCCCGTTCGATTC 57.124 40.909 5.45 0.00 31.14 2.52
4552 7544 5.399013 GTTTTGATCAAATCCCGTTCGATT 58.601 37.500 21.10 0.00 33.84 3.34
4553 7545 4.436852 CGTTTTGATCAAATCCCGTTCGAT 60.437 41.667 21.10 0.00 0.00 3.59
4554 7546 3.120477 CGTTTTGATCAAATCCCGTTCGA 60.120 43.478 21.10 0.61 0.00 3.71
4555 7547 3.160545 CGTTTTGATCAAATCCCGTTCG 58.839 45.455 21.10 12.69 0.00 3.95
4556 7548 3.498082 CCGTTTTGATCAAATCCCGTTC 58.502 45.455 21.10 6.08 0.00 3.95
4557 7549 2.352323 GCCGTTTTGATCAAATCCCGTT 60.352 45.455 21.10 0.00 0.00 4.44
4558 7550 1.201414 GCCGTTTTGATCAAATCCCGT 59.799 47.619 21.10 0.00 0.00 5.28
4559 7551 1.469079 GGCCGTTTTGATCAAATCCCG 60.469 52.381 21.10 20.43 0.00 5.14
4560 7552 1.548269 TGGCCGTTTTGATCAAATCCC 59.452 47.619 21.10 16.52 0.00 3.85
4561 7553 2.417243 CCTGGCCGTTTTGATCAAATCC 60.417 50.000 21.10 18.08 0.00 3.01
4562 7554 2.491693 TCCTGGCCGTTTTGATCAAATC 59.508 45.455 21.10 18.35 0.00 2.17
4563 7555 2.524306 TCCTGGCCGTTTTGATCAAAT 58.476 42.857 21.10 0.00 0.00 2.32
4564 7556 1.988293 TCCTGGCCGTTTTGATCAAA 58.012 45.000 16.91 16.91 0.00 2.69
4565 7557 1.611491 GTTCCTGGCCGTTTTGATCAA 59.389 47.619 3.38 3.38 0.00 2.57
4566 7558 1.243902 GTTCCTGGCCGTTTTGATCA 58.756 50.000 0.00 0.00 0.00 2.92
4567 7559 1.243902 TGTTCCTGGCCGTTTTGATC 58.756 50.000 0.00 0.00 0.00 2.92
4568 7560 1.698506 TTGTTCCTGGCCGTTTTGAT 58.301 45.000 0.00 0.00 0.00 2.57
4569 7561 1.475403 TTTGTTCCTGGCCGTTTTGA 58.525 45.000 0.00 0.00 0.00 2.69
4570 7562 1.930503 GTTTTGTTCCTGGCCGTTTTG 59.069 47.619 0.00 0.00 0.00 2.44
4571 7563 1.134640 GGTTTTGTTCCTGGCCGTTTT 60.135 47.619 0.00 0.00 0.00 2.43
4572 7564 0.462375 GGTTTTGTTCCTGGCCGTTT 59.538 50.000 0.00 0.00 0.00 3.60
4573 7565 1.396607 GGGTTTTGTTCCTGGCCGTT 61.397 55.000 0.00 0.00 0.00 4.44
4574 7566 1.830847 GGGTTTTGTTCCTGGCCGT 60.831 57.895 0.00 0.00 0.00 5.68
4575 7567 1.530655 AGGGTTTTGTTCCTGGCCG 60.531 57.895 0.00 0.00 31.11 6.13
4576 7568 2.049435 CAGGGTTTTGTTCCTGGCC 58.951 57.895 0.00 0.00 44.99 5.36
4580 7572 0.396556 AACGCCAGGGTTTTGTTCCT 60.397 50.000 0.00 0.00 0.00 3.36
4581 7573 0.249280 CAACGCCAGGGTTTTGTTCC 60.249 55.000 0.00 0.00 0.00 3.62
4582 7574 0.249280 CCAACGCCAGGGTTTTGTTC 60.249 55.000 0.00 0.00 0.00 3.18
4583 7575 1.681486 CCCAACGCCAGGGTTTTGTT 61.681 55.000 0.00 0.00 41.61 2.83
4584 7576 2.131067 CCCAACGCCAGGGTTTTGT 61.131 57.895 0.00 0.00 41.61 2.83
4585 7577 2.733945 CCCAACGCCAGGGTTTTG 59.266 61.111 0.00 0.00 41.61 2.44
4603 7595 3.993376 TACAACGCGGGCGCTTAGG 62.993 63.158 12.47 0.00 44.19 2.69
4604 7596 2.507547 TACAACGCGGGCGCTTAG 60.508 61.111 12.47 0.00 44.19 2.18
4605 7597 2.810458 GTACAACGCGGGCGCTTA 60.810 61.111 12.47 0.00 44.19 3.09
4606 7598 4.973055 TGTACAACGCGGGCGCTT 62.973 61.111 12.47 4.14 44.19 4.68
4607 7599 4.752879 ATGTACAACGCGGGCGCT 62.753 61.111 12.47 0.00 44.19 5.92
4608 7600 4.514569 CATGTACAACGCGGGCGC 62.515 66.667 12.47 0.00 44.19 6.53
4609 7601 4.514569 GCATGTACAACGCGGGCG 62.515 66.667 12.47 12.04 46.03 6.13
4610 7602 4.174129 GGCATGTACAACGCGGGC 62.174 66.667 12.47 0.00 0.00 6.13
4611 7603 3.505184 GGGCATGTACAACGCGGG 61.505 66.667 12.47 4.46 0.00 6.13
4612 7604 2.435938 AGGGCATGTACAACGCGG 60.436 61.111 12.47 0.00 0.00 6.46
4613 7605 1.739929 TGAGGGCATGTACAACGCG 60.740 57.895 3.53 3.53 0.00 6.01
4614 7606 0.953471 TGTGAGGGCATGTACAACGC 60.953 55.000 11.23 11.23 0.00 4.84
4615 7607 1.464608 CTTGTGAGGGCATGTACAACG 59.535 52.381 0.00 0.00 0.00 4.10
4616 7608 1.200020 GCTTGTGAGGGCATGTACAAC 59.800 52.381 0.00 0.00 0.00 3.32
4617 7609 1.073763 AGCTTGTGAGGGCATGTACAA 59.926 47.619 0.00 0.00 0.00 2.41
4618 7610 0.692476 AGCTTGTGAGGGCATGTACA 59.308 50.000 0.00 0.00 0.00 2.90
4619 7611 2.691409 TAGCTTGTGAGGGCATGTAC 57.309 50.000 0.00 0.00 0.00 2.90
4620 7612 3.009033 AGTTTAGCTTGTGAGGGCATGTA 59.991 43.478 0.00 0.00 0.00 2.29
4621 7613 2.162681 GTTTAGCTTGTGAGGGCATGT 58.837 47.619 0.00 0.00 0.00 3.21
4622 7614 2.440409 AGTTTAGCTTGTGAGGGCATG 58.560 47.619 0.00 0.00 0.00 4.06
4623 7615 2.887151 AGTTTAGCTTGTGAGGGCAT 57.113 45.000 0.00 0.00 0.00 4.40
4624 7616 3.780804 TTAGTTTAGCTTGTGAGGGCA 57.219 42.857 0.00 0.00 0.00 5.36
4625 7617 4.010349 ACATTAGTTTAGCTTGTGAGGGC 58.990 43.478 0.00 0.00 0.00 5.19
4626 7618 5.245531 TGACATTAGTTTAGCTTGTGAGGG 58.754 41.667 0.00 0.00 0.00 4.30
4627 7619 6.992063 ATGACATTAGTTTAGCTTGTGAGG 57.008 37.500 0.00 0.00 0.00 3.86
4628 7620 7.119699 TCCAATGACATTAGTTTAGCTTGTGAG 59.880 37.037 0.00 0.00 0.00 3.51
4656 7648 3.068590 CCATGCCAAGTGACTGTTTTCTT 59.931 43.478 0.00 0.00 0.00 2.52
4700 7692 2.730672 CGCAAGCTGGTACTCACGC 61.731 63.158 0.00 0.00 0.00 5.34
4707 7699 1.292223 GGTGTCTCGCAAGCTGGTA 59.708 57.895 0.00 0.00 37.18 3.25
4708 7700 2.031163 GGTGTCTCGCAAGCTGGT 59.969 61.111 0.00 0.00 37.18 4.00
4709 7701 2.031012 TGGTGTCTCGCAAGCTGG 59.969 61.111 0.00 0.00 37.18 4.85
4710 7702 1.005748 TCTGGTGTCTCGCAAGCTG 60.006 57.895 0.00 0.00 37.18 4.24
4711 7703 1.181741 TCTCTGGTGTCTCGCAAGCT 61.182 55.000 0.00 0.00 37.18 3.74
4718 7710 3.574826 ACCACTTACTTCTCTGGTGTCTC 59.425 47.826 0.00 0.00 35.61 3.36
4725 7717 1.732732 CGCGGACCACTTACTTCTCTG 60.733 57.143 0.00 0.00 0.00 3.35
4730 7722 0.961019 TGTACGCGGACCACTTACTT 59.039 50.000 20.91 0.00 0.00 2.24
4742 7734 2.657296 CCGGGCAGTATGTACGCG 60.657 66.667 3.53 3.53 39.31 6.01
4755 7747 2.561569 GTCATGTAAGATTGGTCCGGG 58.438 52.381 0.00 0.00 0.00 5.73
4756 7748 2.561569 GGTCATGTAAGATTGGTCCGG 58.438 52.381 0.00 0.00 0.00 5.14
4757 7749 2.159156 TCGGTCATGTAAGATTGGTCCG 60.159 50.000 0.00 0.00 34.57 4.79
4758 7750 3.195661 GTCGGTCATGTAAGATTGGTCC 58.804 50.000 0.00 0.00 0.00 4.46
4759 7751 3.857052 TGTCGGTCATGTAAGATTGGTC 58.143 45.455 0.00 0.00 0.00 4.02
4760 7752 3.513912 TCTGTCGGTCATGTAAGATTGGT 59.486 43.478 0.00 0.00 0.00 3.67
4761 7753 3.865745 GTCTGTCGGTCATGTAAGATTGG 59.134 47.826 0.00 0.00 0.00 3.16
4762 7754 4.494484 TGTCTGTCGGTCATGTAAGATTG 58.506 43.478 0.00 0.00 0.00 2.67
4763 7755 4.801330 TGTCTGTCGGTCATGTAAGATT 57.199 40.909 0.00 0.00 0.00 2.40
4764 7756 4.686972 CATGTCTGTCGGTCATGTAAGAT 58.313 43.478 9.88 0.00 35.61 2.40
4765 7757 3.676049 GCATGTCTGTCGGTCATGTAAGA 60.676 47.826 16.89 0.00 40.40 2.10
4766 7758 2.604914 GCATGTCTGTCGGTCATGTAAG 59.395 50.000 16.89 0.00 40.40 2.34
4767 7759 2.028567 TGCATGTCTGTCGGTCATGTAA 60.029 45.455 16.89 6.56 40.40 2.41
4768 7760 1.548269 TGCATGTCTGTCGGTCATGTA 59.452 47.619 16.89 11.68 40.40 2.29
4769 7761 0.321346 TGCATGTCTGTCGGTCATGT 59.679 50.000 16.89 0.00 40.40 3.21
4770 7762 1.129251 GTTGCATGTCTGTCGGTCATG 59.871 52.381 12.87 12.87 40.98 3.07
4771 7763 1.002430 AGTTGCATGTCTGTCGGTCAT 59.998 47.619 0.00 0.00 0.00 3.06
4772 7764 0.392706 AGTTGCATGTCTGTCGGTCA 59.607 50.000 0.00 0.00 0.00 4.02
4773 7765 2.263077 CTAGTTGCATGTCTGTCGGTC 58.737 52.381 0.00 0.00 0.00 4.79
4774 7766 1.618837 ACTAGTTGCATGTCTGTCGGT 59.381 47.619 0.00 0.00 0.00 4.69
4775 7767 2.370281 ACTAGTTGCATGTCTGTCGG 57.630 50.000 0.00 0.00 0.00 4.79
4776 7768 4.457810 CAAAACTAGTTGCATGTCTGTCG 58.542 43.478 9.34 0.00 0.00 4.35
4787 7779 4.923281 GCCACCTTTATGCAAAACTAGTTG 59.077 41.667 9.34 0.00 0.00 3.16
4788 7780 4.832823 AGCCACCTTTATGCAAAACTAGTT 59.167 37.500 1.12 1.12 0.00 2.24
4789 7781 4.218417 CAGCCACCTTTATGCAAAACTAGT 59.782 41.667 0.00 0.00 0.00 2.57
4790 7782 4.380867 CCAGCCACCTTTATGCAAAACTAG 60.381 45.833 0.00 0.00 0.00 2.57
4791 7783 3.509575 CCAGCCACCTTTATGCAAAACTA 59.490 43.478 0.00 0.00 0.00 2.24
4792 7784 2.299867 CCAGCCACCTTTATGCAAAACT 59.700 45.455 0.00 0.00 0.00 2.66
4793 7785 2.687370 CCAGCCACCTTTATGCAAAAC 58.313 47.619 0.00 0.00 0.00 2.43
4794 7786 1.001860 GCCAGCCACCTTTATGCAAAA 59.998 47.619 0.00 0.00 0.00 2.44
4795 7787 0.607620 GCCAGCCACCTTTATGCAAA 59.392 50.000 0.00 0.00 0.00 3.68
4796 7788 1.594194 CGCCAGCCACCTTTATGCAA 61.594 55.000 0.00 0.00 0.00 4.08
4797 7789 2.045708 CGCCAGCCACCTTTATGCA 61.046 57.895 0.00 0.00 0.00 3.96
4798 7790 2.774799 CCGCCAGCCACCTTTATGC 61.775 63.158 0.00 0.00 0.00 3.14
4799 7791 0.965363 AACCGCCAGCCACCTTTATG 60.965 55.000 0.00 0.00 0.00 1.90
4800 7792 0.965363 CAACCGCCAGCCACCTTTAT 60.965 55.000 0.00 0.00 0.00 1.40
4801 7793 1.602323 CAACCGCCAGCCACCTTTA 60.602 57.895 0.00 0.00 0.00 1.85
4802 7794 2.912025 CAACCGCCAGCCACCTTT 60.912 61.111 0.00 0.00 0.00 3.11
4803 7795 4.204028 ACAACCGCCAGCCACCTT 62.204 61.111 0.00 0.00 0.00 3.50
4804 7796 4.643387 GACAACCGCCAGCCACCT 62.643 66.667 0.00 0.00 0.00 4.00
4805 7797 4.643387 AGACAACCGCCAGCCACC 62.643 66.667 0.00 0.00 0.00 4.61
4806 7798 3.357079 CAGACAACCGCCAGCCAC 61.357 66.667 0.00 0.00 0.00 5.01
4807 7799 2.902423 AAACAGACAACCGCCAGCCA 62.902 55.000 0.00 0.00 0.00 4.75
4808 7800 2.130073 GAAACAGACAACCGCCAGCC 62.130 60.000 0.00 0.00 0.00 4.85
4809 7801 1.166531 AGAAACAGACAACCGCCAGC 61.167 55.000 0.00 0.00 0.00 4.85
4810 7802 0.868406 GAGAAACAGACAACCGCCAG 59.132 55.000 0.00 0.00 0.00 4.85
4811 7803 0.534203 GGAGAAACAGACAACCGCCA 60.534 55.000 0.00 0.00 0.00 5.69
4812 7804 0.250338 AGGAGAAACAGACAACCGCC 60.250 55.000 0.00 0.00 0.00 6.13
4813 7805 2.067013 GTAGGAGAAACAGACAACCGC 58.933 52.381 0.00 0.00 0.00 5.68
4814 7806 3.662247 AGTAGGAGAAACAGACAACCG 57.338 47.619 0.00 0.00 0.00 4.44
4815 7807 6.522946 AGTAAAGTAGGAGAAACAGACAACC 58.477 40.000 0.00 0.00 0.00 3.77
4816 7808 7.709613 TCAAGTAAAGTAGGAGAAACAGACAAC 59.290 37.037 0.00 0.00 0.00 3.32
4817 7809 7.788026 TCAAGTAAAGTAGGAGAAACAGACAA 58.212 34.615 0.00 0.00 0.00 3.18
4818 7810 7.356089 TCAAGTAAAGTAGGAGAAACAGACA 57.644 36.000 0.00 0.00 0.00 3.41
4819 7811 8.834749 ATTCAAGTAAAGTAGGAGAAACAGAC 57.165 34.615 0.00 0.00 0.00 3.51
4820 7812 7.813148 CGATTCAAGTAAAGTAGGAGAAACAGA 59.187 37.037 0.00 0.00 0.00 3.41
4821 7813 7.063544 CCGATTCAAGTAAAGTAGGAGAAACAG 59.936 40.741 0.00 0.00 0.00 3.16
4822 7814 6.872020 CCGATTCAAGTAAAGTAGGAGAAACA 59.128 38.462 0.00 0.00 0.00 2.83
4823 7815 7.095270 TCCGATTCAAGTAAAGTAGGAGAAAC 58.905 38.462 0.00 0.00 0.00 2.78
4824 7816 7.235935 TCCGATTCAAGTAAAGTAGGAGAAA 57.764 36.000 0.00 0.00 0.00 2.52
4825 7817 6.845758 TCCGATTCAAGTAAAGTAGGAGAA 57.154 37.500 0.00 0.00 0.00 2.87
4826 7818 7.419711 AATCCGATTCAAGTAAAGTAGGAGA 57.580 36.000 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.