Multiple sequence alignment - TraesCS5D01G114200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G114200 chr5D 100.000 2564 0 0 1 2564 133316254 133318817 0.000000e+00 4735.0
1 TraesCS5D01G114200 chr2D 90.819 1612 123 6 1 1594 585468406 585466802 0.000000e+00 2134.0
2 TraesCS5D01G114200 chr2D 80.315 127 21 3 1697 1823 513037867 513037989 2.720000e-15 93.5
3 TraesCS5D01G114200 chr5A 88.958 1612 155 4 1 1594 24362608 24361002 0.000000e+00 1969.0
4 TraesCS5D01G114200 chr5A 90.595 840 73 6 1602 2436 155557877 155558715 0.000000e+00 1109.0
5 TraesCS5D01G114200 chr5A 90.876 548 47 2 1046 1590 485931087 485931634 0.000000e+00 732.0
6 TraesCS5D01G114200 chr5A 96.992 133 4 0 2432 2564 155601911 155602043 9.230000e-55 224.0
7 TraesCS5D01G114200 chr5A 83.333 120 15 4 2445 2560 396200800 396200918 3.490000e-19 106.0
8 TraesCS5D01G114200 chr4A 88.308 1608 167 3 3 1594 674442852 674441250 0.000000e+00 1908.0
9 TraesCS5D01G114200 chr4A 90.290 587 55 2 1006 1591 719937492 719938077 0.000000e+00 767.0
10 TraesCS5D01G114200 chr4A 84.677 124 13 6 2441 2559 34711398 34711276 4.480000e-23 119.0
11 TraesCS5D01G114200 chr2A 88.224 1605 169 3 3 1591 122053061 122054661 0.000000e+00 1899.0
12 TraesCS5D01G114200 chr2A 87.916 1291 137 2 3 1277 4700107 4701394 0.000000e+00 1502.0
13 TraesCS5D01G114200 chr2A 84.426 122 13 6 2441 2556 541779002 541779123 5.800000e-22 115.0
14 TraesCS5D01G114200 chr3B 87.935 1608 169 9 3 1594 546911829 546910231 0.000000e+00 1871.0
15 TraesCS5D01G114200 chr6B 87.189 1608 161 12 3 1594 675206836 675205258 0.000000e+00 1786.0
16 TraesCS5D01G114200 chr6B 79.861 144 28 1 1675 1818 53627676 53627818 1.250000e-18 104.0
17 TraesCS5D01G114200 chr6B 79.470 151 24 6 1674 1823 688122821 688122677 1.620000e-17 100.0
18 TraesCS5D01G114200 chr6A 87.695 1154 140 2 442 1594 431049401 431048249 0.000000e+00 1343.0
19 TraesCS5D01G114200 chr6A 78.528 163 27 6 1719 1877 248360930 248360772 1.620000e-17 100.0
20 TraesCS5D01G114200 chr7B 87.435 1154 125 3 48 1185 526389247 526390396 0.000000e+00 1310.0
21 TraesCS5D01G114200 chr5B 85.349 744 88 12 1687 2414 144756809 144757547 0.000000e+00 750.0
22 TraesCS5D01G114200 chr5B 77.778 135 29 1 1674 1808 426984458 426984325 5.880000e-12 82.4
23 TraesCS5D01G114200 chr3A 73.719 449 79 22 1683 2118 732783640 732783218 3.440000e-29 139.0
24 TraesCS5D01G114200 chr1D 82.418 91 15 1 2445 2534 475485363 475485453 7.610000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G114200 chr5D 133316254 133318817 2563 False 4735 4735 100.000 1 2564 1 chr5D.!!$F1 2563
1 TraesCS5D01G114200 chr2D 585466802 585468406 1604 True 2134 2134 90.819 1 1594 1 chr2D.!!$R1 1593
2 TraesCS5D01G114200 chr5A 24361002 24362608 1606 True 1969 1969 88.958 1 1594 1 chr5A.!!$R1 1593
3 TraesCS5D01G114200 chr5A 155557877 155558715 838 False 1109 1109 90.595 1602 2436 1 chr5A.!!$F1 834
4 TraesCS5D01G114200 chr5A 485931087 485931634 547 False 732 732 90.876 1046 1590 1 chr5A.!!$F4 544
5 TraesCS5D01G114200 chr4A 674441250 674442852 1602 True 1908 1908 88.308 3 1594 1 chr4A.!!$R2 1591
6 TraesCS5D01G114200 chr4A 719937492 719938077 585 False 767 767 90.290 1006 1591 1 chr4A.!!$F1 585
7 TraesCS5D01G114200 chr2A 122053061 122054661 1600 False 1899 1899 88.224 3 1591 1 chr2A.!!$F2 1588
8 TraesCS5D01G114200 chr2A 4700107 4701394 1287 False 1502 1502 87.916 3 1277 1 chr2A.!!$F1 1274
9 TraesCS5D01G114200 chr3B 546910231 546911829 1598 True 1871 1871 87.935 3 1594 1 chr3B.!!$R1 1591
10 TraesCS5D01G114200 chr6B 675205258 675206836 1578 True 1786 1786 87.189 3 1594 1 chr6B.!!$R1 1591
11 TraesCS5D01G114200 chr6A 431048249 431049401 1152 True 1343 1343 87.695 442 1594 1 chr6A.!!$R2 1152
12 TraesCS5D01G114200 chr7B 526389247 526390396 1149 False 1310 1310 87.435 48 1185 1 chr7B.!!$F1 1137
13 TraesCS5D01G114200 chr5B 144756809 144757547 738 False 750 750 85.349 1687 2414 1 chr5B.!!$F1 727

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
557 577 0.033208 GATTTGATGGGGAGCCACCA 60.033 55.0 0.0 0.0 43.22 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2039 2078 0.107897 GGTCATGCCATGTCGGTACA 60.108 55.0 4.31 0.0 40.69 2.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 65 8.759481 TCATAGTTTTAATATGGCCATGTTGA 57.241 30.769 31.51 23.53 32.54 3.18
115 118 3.868888 GACTCACTTTGTGCAAGAGTC 57.131 47.619 13.32 13.32 45.54 3.36
124 127 1.419762 TGTGCAAGAGTCTTAAGGGCA 59.580 47.619 4.74 8.26 0.00 5.36
217 220 6.849085 AGTATTTGGGCATGAATACAAACA 57.151 33.333 14.17 0.22 39.85 2.83
220 223 8.976353 AGTATTTGGGCATGAATACAAACATTA 58.024 29.630 14.17 1.25 39.85 1.90
384 404 4.478317 TGGGATGAACAGTTGATAAGGGAT 59.522 41.667 0.00 0.00 0.00 3.85
423 443 3.995199 TGCTGATCGGATACTGGAAATC 58.005 45.455 5.48 0.00 0.00 2.17
465 485 6.572182 ACAGAGGATTATATAGCATGGCAT 57.428 37.500 0.00 0.00 0.00 4.40
487 507 8.238631 GGCATTTAAGTAAGAACGGTATTTTCA 58.761 33.333 0.00 0.00 0.00 2.69
521 541 4.102649 GCGTGTTATAAACATTGGGAAGC 58.897 43.478 0.00 0.00 44.35 3.86
524 544 5.220777 CGTGTTATAAACATTGGGAAGCGAT 60.221 40.000 0.00 0.00 44.35 4.58
530 550 5.659440 AAACATTGGGAAGCGATTTATGT 57.341 34.783 0.00 0.00 0.00 2.29
553 573 1.216427 AGGAAGATTTGATGGGGAGCC 59.784 52.381 0.00 0.00 0.00 4.70
557 577 0.033208 GATTTGATGGGGAGCCACCA 60.033 55.000 0.00 0.00 43.22 4.17
621 641 2.163211 GCTCAAACTGCCAGGAAAGATC 59.837 50.000 0.00 0.00 0.00 2.75
645 665 6.151648 TCAAGATCTTTATTTGGAGGTGCTTG 59.848 38.462 4.86 0.00 0.00 4.01
678 698 1.398390 CCATGCTTCAGCGTTCTAACC 59.602 52.381 0.00 0.00 45.83 2.85
690 710 3.120649 GCGTTCTAACCAATCGGCATATC 60.121 47.826 0.00 0.00 34.57 1.63
695 715 2.743636 ACCAATCGGCATATCGGTAG 57.256 50.000 0.00 0.00 34.57 3.18
698 718 3.767673 ACCAATCGGCATATCGGTAGTAT 59.232 43.478 0.00 0.00 34.57 2.12
702 722 3.276857 TCGGCATATCGGTAGTATCTCC 58.723 50.000 0.00 0.00 0.00 3.71
714 734 5.480772 CGGTAGTATCTCCCAATGTCCTATT 59.519 44.000 0.00 0.00 0.00 1.73
721 741 3.364549 TCCCAATGTCCTATTTGCAAGG 58.635 45.455 0.00 0.00 35.26 3.61
725 745 2.214376 TGTCCTATTTGCAAGGTGGG 57.786 50.000 0.00 4.62 35.48 4.61
726 746 1.272425 TGTCCTATTTGCAAGGTGGGG 60.272 52.381 13.76 7.69 35.48 4.96
728 748 0.041090 CCTATTTGCAAGGTGGGGGT 59.959 55.000 0.00 0.00 0.00 4.95
741 761 2.044758 GTGGGGGTGGAAGATATACGT 58.955 52.381 0.00 0.00 0.00 3.57
746 766 3.326747 GGGTGGAAGATATACGTCATGC 58.673 50.000 0.00 0.00 0.00 4.06
748 768 3.990469 GGTGGAAGATATACGTCATGCAG 59.010 47.826 0.00 0.00 0.00 4.41
786 806 1.339535 GCTCTAGCAGTTTGGGAAGCT 60.340 52.381 0.00 0.00 41.59 3.74
801 821 2.356194 GCTTTGGGCGTTGGCAAG 60.356 61.111 0.00 0.00 42.47 4.01
802 822 2.356194 CTTTGGGCGTTGGCAAGC 60.356 61.111 0.00 6.65 42.47 4.01
839 859 0.259065 TGGATAGACCGCTCTGGAGT 59.741 55.000 0.00 0.00 42.00 3.85
842 862 2.156098 GATAGACCGCTCTGGAGTAGG 58.844 57.143 10.81 10.81 42.00 3.18
852 872 4.638421 CGCTCTGGAGTAGGGATAATAGAG 59.362 50.000 0.00 0.00 34.91 2.43
854 874 6.576641 CGCTCTGGAGTAGGGATAATAGAGTA 60.577 46.154 0.00 0.00 34.44 2.59
938 960 1.133945 TGCTGGAACTTGCTGGTACAA 60.134 47.619 0.00 0.00 38.70 2.41
1044 1066 1.841302 ATTTCGTCTGGGCAGCAGGA 61.841 55.000 0.00 0.00 0.00 3.86
1050 1072 1.531365 CTGGGCAGCAGGAAAACCA 60.531 57.895 0.00 0.00 0.00 3.67
1104 1126 2.564947 TGTTTTGTCCAGCCAACAAGTT 59.435 40.909 0.00 0.00 37.86 2.66
1176 1198 1.169577 CAGTAGTGAGAGACAGCCGT 58.830 55.000 0.00 0.00 0.00 5.68
1206 1229 0.527565 TCGGGGCGTCTACAACTAAC 59.472 55.000 0.00 0.00 0.00 2.34
1269 1292 2.717639 TGATGGAAGGCCTAAAGCTC 57.282 50.000 5.16 0.00 43.05 4.09
1383 1408 3.181440 TGGCAGCCCCAATATTAGAAGAG 60.181 47.826 9.64 0.00 41.82 2.85
1401 1426 5.648526 AGAAGAGTGTAGATTCTTGCTACGA 59.351 40.000 2.15 0.00 40.79 3.43
1447 1472 7.264947 TGAGCATTGTAATCGAGAGTCAAATA 58.735 34.615 0.00 0.00 0.00 1.40
1479 1504 1.414550 GAGCTAGCTAACTGGGGAAGG 59.585 57.143 19.38 0.00 0.00 3.46
1525 1552 5.131475 GTGGATGTACCCCCTGAGTTTATTA 59.869 44.000 0.00 0.00 38.00 0.98
1582 1609 3.629142 AATAAAGCTAGCCGTGAAGGT 57.371 42.857 12.13 0.00 43.70 3.50
1591 1618 1.370064 CCGTGAAGGTCTTCCCGTT 59.630 57.895 12.85 0.00 38.47 4.44
1594 1621 2.354403 CCGTGAAGGTCTTCCCGTTAAT 60.354 50.000 12.85 0.00 38.47 1.40
1595 1622 3.332034 CGTGAAGGTCTTCCCGTTAATT 58.668 45.455 8.09 0.00 36.09 1.40
1596 1623 3.749609 CGTGAAGGTCTTCCCGTTAATTT 59.250 43.478 8.09 0.00 36.09 1.82
1597 1624 4.214758 CGTGAAGGTCTTCCCGTTAATTTT 59.785 41.667 8.09 0.00 36.09 1.82
1598 1625 5.278120 CGTGAAGGTCTTCCCGTTAATTTTT 60.278 40.000 8.09 0.00 36.09 1.94
1642 1669 0.324614 CCATGCATACCCCGCTGATA 59.675 55.000 0.00 0.00 0.00 2.15
1674 1701 2.491298 TGCATGCCAGCGAATTAAAAGA 59.509 40.909 16.68 0.00 37.31 2.52
1766 1794 4.932799 TCGCTCCGATTCAAAATCTGTTTA 59.067 37.500 0.00 0.00 0.00 2.01
1811 1840 4.839668 AGATCTTCGAAACTAGATCCCG 57.160 45.455 17.33 0.00 45.05 5.14
1825 1854 2.838202 AGATCCCGTGTTGGTATGTCTT 59.162 45.455 0.00 0.00 35.15 3.01
1845 1875 3.162202 TGACGACACCTTTTTCACGTA 57.838 42.857 0.00 0.00 34.26 3.57
1987 2026 7.924412 TCATTCGTGGTAAATTATCAGGTCTAC 59.076 37.037 5.95 0.00 0.00 2.59
2037 2076 3.386237 GGCTGCGAGGTGAGGTCT 61.386 66.667 0.00 0.00 0.00 3.85
2039 2078 1.395826 GGCTGCGAGGTGAGGTCTAT 61.396 60.000 0.00 0.00 0.00 1.98
2064 2103 0.813184 GACATGGCATGACCCACTTG 59.187 55.000 32.74 5.91 37.79 3.16
2070 2109 1.000274 GGCATGACCCACTTGTGAAAC 60.000 52.381 0.00 0.00 37.35 2.78
2139 2178 0.457443 CCGATGCAGTGTCTGAGCTA 59.543 55.000 0.00 0.00 32.44 3.32
2195 2235 6.636666 CGTAAAGTACCATGACATTTACGT 57.363 37.500 22.74 0.00 46.63 3.57
2205 2246 6.072893 ACCATGACATTTACGTTGAAGTTACC 60.073 38.462 0.00 0.00 0.00 2.85
2215 2256 2.934553 GTTGAAGTTACCGAGGGTATGC 59.065 50.000 0.00 0.00 38.05 3.14
2235 2276 5.913137 TGCTTTTCAACTTCTTTTCCTCA 57.087 34.783 0.00 0.00 0.00 3.86
2279 2320 8.905850 TGTTTGCATGTCAATTATCATGTCTAT 58.094 29.630 17.42 0.00 42.09 1.98
2365 2410 2.333926 TCAAAGTTATCGCCGTGTCTG 58.666 47.619 0.00 0.00 0.00 3.51
2374 2419 1.499056 GCCGTGTCTGCATGAGTTG 59.501 57.895 0.00 0.00 33.58 3.16
2395 2440 4.556233 TGTCAGCTCTGTTGTGTGTATAC 58.444 43.478 0.00 0.00 0.00 1.47
2423 2468 7.132213 CCATGCTATTTACACACTTTTATCCG 58.868 38.462 0.00 0.00 0.00 4.18
2425 2470 6.408035 TGCTATTTACACACTTTTATCCGGA 58.592 36.000 6.61 6.61 0.00 5.14
2428 2473 7.707893 GCTATTTACACACTTTTATCCGGAGTA 59.292 37.037 11.34 0.00 0.00 2.59
2430 2475 7.894376 TTTACACACTTTTATCCGGAGTAAG 57.106 36.000 11.34 14.98 0.00 2.34
2436 2481 7.816031 CACACTTTTATCCGGAGTAAGAAAGTA 59.184 37.037 22.55 1.43 34.99 2.24
2437 2482 8.370182 ACACTTTTATCCGGAGTAAGAAAGTAA 58.630 33.333 22.55 7.03 34.99 2.24
2438 2483 9.379791 CACTTTTATCCGGAGTAAGAAAGTAAT 57.620 33.333 22.55 1.00 34.99 1.89
2439 2484 9.379791 ACTTTTATCCGGAGTAAGAAAGTAATG 57.620 33.333 22.55 8.10 34.99 1.90
2440 2485 8.726870 TTTTATCCGGAGTAAGAAAGTAATGG 57.273 34.615 11.34 0.00 0.00 3.16
2441 2486 4.133013 TCCGGAGTAAGAAAGTAATGGC 57.867 45.455 0.00 0.00 0.00 4.40
2442 2487 2.864343 CCGGAGTAAGAAAGTAATGGCG 59.136 50.000 0.00 0.00 0.00 5.69
2443 2488 3.518590 CGGAGTAAGAAAGTAATGGCGT 58.481 45.455 0.00 0.00 0.00 5.68
2444 2489 3.930848 CGGAGTAAGAAAGTAATGGCGTT 59.069 43.478 0.00 0.00 0.00 4.84
2445 2490 4.201685 CGGAGTAAGAAAGTAATGGCGTTG 60.202 45.833 1.27 0.00 0.00 4.10
2446 2491 4.694037 GGAGTAAGAAAGTAATGGCGTTGT 59.306 41.667 1.27 0.00 0.00 3.32
2447 2492 5.180680 GGAGTAAGAAAGTAATGGCGTTGTT 59.819 40.000 1.27 0.00 0.00 2.83
2448 2493 6.293790 GGAGTAAGAAAGTAATGGCGTTGTTT 60.294 38.462 1.27 1.90 0.00 2.83
2449 2494 6.435428 AGTAAGAAAGTAATGGCGTTGTTTG 58.565 36.000 1.27 0.00 0.00 2.93
2450 2495 4.911514 AGAAAGTAATGGCGTTGTTTGT 57.088 36.364 1.27 0.00 0.00 2.83
2451 2496 6.380095 AAGAAAGTAATGGCGTTGTTTGTA 57.620 33.333 1.27 0.00 0.00 2.41
2452 2497 5.754778 AGAAAGTAATGGCGTTGTTTGTAC 58.245 37.500 1.27 0.00 0.00 2.90
2453 2498 3.799137 AGTAATGGCGTTGTTTGTACG 57.201 42.857 1.27 0.00 41.71 3.67
2454 2499 3.132925 AGTAATGGCGTTGTTTGTACGT 58.867 40.909 1.27 0.00 40.92 3.57
2455 2500 2.392933 AATGGCGTTGTTTGTACGTG 57.607 45.000 0.00 0.00 40.92 4.49
2456 2501 1.584175 ATGGCGTTGTTTGTACGTGA 58.416 45.000 0.00 0.00 40.92 4.35
2457 2502 0.931702 TGGCGTTGTTTGTACGTGAG 59.068 50.000 0.00 0.00 40.92 3.51
2459 2504 1.328374 GGCGTTGTTTGTACGTGAGTT 59.672 47.619 0.00 0.00 46.40 3.01
2460 2505 2.539274 GGCGTTGTTTGTACGTGAGTTA 59.461 45.455 0.00 0.00 46.40 2.24
2461 2506 3.184986 GGCGTTGTTTGTACGTGAGTTAT 59.815 43.478 0.00 0.00 46.40 1.89
2462 2507 4.380290 GCGTTGTTTGTACGTGAGTTATC 58.620 43.478 0.00 0.00 46.40 1.75
2463 2508 4.084952 GCGTTGTTTGTACGTGAGTTATCA 60.085 41.667 0.00 0.00 46.40 2.15
2464 2509 5.595993 CGTTGTTTGTACGTGAGTTATCAG 58.404 41.667 0.00 0.00 46.40 2.90
2465 2510 5.371629 GTTGTTTGTACGTGAGTTATCAGC 58.628 41.667 0.00 0.00 46.40 4.26
2466 2511 4.878439 TGTTTGTACGTGAGTTATCAGCT 58.122 39.130 0.00 0.00 46.40 4.24
2467 2512 4.921515 TGTTTGTACGTGAGTTATCAGCTC 59.078 41.667 0.00 0.00 46.40 4.09
2468 2513 5.162075 GTTTGTACGTGAGTTATCAGCTCT 58.838 41.667 0.00 0.00 46.40 4.09
2469 2514 4.357018 TGTACGTGAGTTATCAGCTCTG 57.643 45.455 0.00 0.00 46.40 3.35
2470 2515 3.756963 TGTACGTGAGTTATCAGCTCTGT 59.243 43.478 0.00 0.00 46.40 3.41
2471 2516 3.944055 ACGTGAGTTATCAGCTCTGTT 57.056 42.857 0.00 0.00 46.40 3.16
2472 2517 5.413523 TGTACGTGAGTTATCAGCTCTGTTA 59.586 40.000 0.00 0.00 46.40 2.41
2473 2518 5.584253 ACGTGAGTTATCAGCTCTGTTAT 57.416 39.130 0.00 0.00 46.40 1.89
2474 2519 5.344066 ACGTGAGTTATCAGCTCTGTTATG 58.656 41.667 0.00 0.00 46.40 1.90
2475 2520 4.208047 CGTGAGTTATCAGCTCTGTTATGC 59.792 45.833 0.00 0.00 35.66 3.14
2476 2521 4.208047 GTGAGTTATCAGCTCTGTTATGCG 59.792 45.833 0.00 0.00 35.66 4.73
2477 2522 4.142160 TGAGTTATCAGCTCTGTTATGCGT 60.142 41.667 0.00 0.00 34.30 5.24
2478 2523 5.067283 TGAGTTATCAGCTCTGTTATGCGTA 59.933 40.000 0.00 0.00 34.30 4.42
2479 2524 6.090483 AGTTATCAGCTCTGTTATGCGTAT 57.910 37.500 0.00 0.00 0.00 3.06
2480 2525 7.040686 TGAGTTATCAGCTCTGTTATGCGTATA 60.041 37.037 0.00 0.00 34.30 1.47
2481 2526 7.831753 AGTTATCAGCTCTGTTATGCGTATAT 58.168 34.615 0.00 0.00 0.00 0.86
2482 2527 8.957466 AGTTATCAGCTCTGTTATGCGTATATA 58.043 33.333 0.00 0.00 0.00 0.86
2483 2528 9.569167 GTTATCAGCTCTGTTATGCGTATATAA 57.431 33.333 0.00 0.00 0.00 0.98
2484 2529 9.569167 TTATCAGCTCTGTTATGCGTATATAAC 57.431 33.333 0.00 3.65 41.62 1.89
2485 2530 6.387465 TCAGCTCTGTTATGCGTATATAACC 58.613 40.000 13.14 3.08 40.93 2.85
2486 2531 6.015772 TCAGCTCTGTTATGCGTATATAACCA 60.016 38.462 13.14 1.80 40.93 3.67
2487 2532 6.813649 CAGCTCTGTTATGCGTATATAACCAT 59.186 38.462 13.14 2.92 40.93 3.55
2488 2533 7.973944 CAGCTCTGTTATGCGTATATAACCATA 59.026 37.037 13.14 0.00 40.93 2.74
2489 2534 7.974501 AGCTCTGTTATGCGTATATAACCATAC 59.025 37.037 13.14 1.34 40.93 2.39
2490 2535 7.974501 GCTCTGTTATGCGTATATAACCATACT 59.025 37.037 13.14 0.00 40.93 2.12
2498 2543 8.246908 TGCGTATATAACCATACTATTTGCAC 57.753 34.615 0.00 0.00 30.56 4.57
2499 2544 7.873505 TGCGTATATAACCATACTATTTGCACA 59.126 33.333 0.00 0.00 30.56 4.57
2500 2545 8.879759 GCGTATATAACCATACTATTTGCACAT 58.120 33.333 0.00 0.00 30.56 3.21
2512 2557 9.959721 ATACTATTTGCACATAAGTTATAGGGG 57.040 33.333 0.00 0.00 0.00 4.79
2513 2558 7.812306 ACTATTTGCACATAAGTTATAGGGGT 58.188 34.615 0.00 0.00 0.00 4.95
2514 2559 8.940982 ACTATTTGCACATAAGTTATAGGGGTA 58.059 33.333 0.00 0.00 0.00 3.69
2515 2560 9.959721 CTATTTGCACATAAGTTATAGGGGTAT 57.040 33.333 0.00 0.00 0.00 2.73
2516 2561 8.635765 ATTTGCACATAAGTTATAGGGGTATG 57.364 34.615 0.00 0.00 0.00 2.39
2517 2562 6.757173 TGCACATAAGTTATAGGGGTATGT 57.243 37.500 0.00 0.00 36.15 2.29
2518 2563 7.144234 TGCACATAAGTTATAGGGGTATGTT 57.856 36.000 0.00 0.00 34.07 2.71
2519 2564 7.579105 TGCACATAAGTTATAGGGGTATGTTT 58.421 34.615 0.00 0.00 34.07 2.83
2520 2565 8.056400 TGCACATAAGTTATAGGGGTATGTTTT 58.944 33.333 0.00 0.00 34.07 2.43
2521 2566 8.909923 GCACATAAGTTATAGGGGTATGTTTTT 58.090 33.333 0.00 0.00 34.07 1.94
2534 2579 9.772973 AGGGGTATGTTTTTCAATAACTTTTTC 57.227 29.630 0.00 0.00 0.00 2.29
2535 2580 8.995220 GGGGTATGTTTTTCAATAACTTTTTCC 58.005 33.333 0.00 0.00 0.00 3.13
2536 2581 9.549078 GGGTATGTTTTTCAATAACTTTTTCCA 57.451 29.630 0.00 0.00 0.00 3.53
2539 2584 8.675705 ATGTTTTTCAATAACTTTTTCCAGGG 57.324 30.769 0.00 0.00 0.00 4.45
2540 2585 6.540551 TGTTTTTCAATAACTTTTTCCAGGGC 59.459 34.615 0.00 0.00 0.00 5.19
2541 2586 5.878406 TTTCAATAACTTTTTCCAGGGCA 57.122 34.783 0.00 0.00 0.00 5.36
2542 2587 5.878406 TTCAATAACTTTTTCCAGGGCAA 57.122 34.783 0.00 0.00 0.00 4.52
2543 2588 5.878406 TCAATAACTTTTTCCAGGGCAAA 57.122 34.783 0.00 0.00 0.00 3.68
2544 2589 6.240549 TCAATAACTTTTTCCAGGGCAAAA 57.759 33.333 0.00 0.00 0.00 2.44
2545 2590 6.287525 TCAATAACTTTTTCCAGGGCAAAAG 58.712 36.000 17.76 17.76 43.05 2.27
2549 2594 5.018539 ACTTTTTCCAGGGCAAAAGTTAC 57.981 39.130 18.84 0.00 46.42 2.50
2550 2595 4.141801 ACTTTTTCCAGGGCAAAAGTTACC 60.142 41.667 18.84 0.00 46.42 2.85
2551 2596 2.757894 TTCCAGGGCAAAAGTTACCA 57.242 45.000 0.00 0.00 0.00 3.25
2552 2597 1.989706 TCCAGGGCAAAAGTTACCAC 58.010 50.000 0.00 0.00 0.00 4.16
2553 2598 0.596082 CCAGGGCAAAAGTTACCACG 59.404 55.000 0.00 0.00 0.00 4.94
2554 2599 0.596082 CAGGGCAAAAGTTACCACGG 59.404 55.000 0.00 0.00 0.00 4.94
2555 2600 0.184211 AGGGCAAAAGTTACCACGGT 59.816 50.000 0.00 0.00 0.00 4.83
2556 2601 0.312729 GGGCAAAAGTTACCACGGTG 59.687 55.000 0.00 0.00 0.00 4.94
2557 2602 1.026584 GGCAAAAGTTACCACGGTGT 58.973 50.000 7.45 0.00 0.00 4.16
2558 2603 1.406180 GGCAAAAGTTACCACGGTGTT 59.594 47.619 7.45 0.00 0.00 3.32
2559 2604 2.159212 GGCAAAAGTTACCACGGTGTTT 60.159 45.455 7.45 0.00 0.00 2.83
2560 2605 3.066481 GGCAAAAGTTACCACGGTGTTTA 59.934 43.478 7.45 0.00 0.00 2.01
2561 2606 4.261698 GGCAAAAGTTACCACGGTGTTTAT 60.262 41.667 7.45 0.00 0.00 1.40
2562 2607 5.048852 GGCAAAAGTTACCACGGTGTTTATA 60.049 40.000 7.45 0.00 0.00 0.98
2563 2608 5.852755 GCAAAAGTTACCACGGTGTTTATAC 59.147 40.000 7.45 0.00 0.00 1.47
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 65 4.623932 TGAGTCTCCAGCATTGTTTAGT 57.376 40.909 0.00 0.00 0.00 2.24
115 118 7.158021 CAGAAGGATAGTATCTTGCCCTTAAG 58.842 42.308 9.97 0.00 34.48 1.85
384 404 5.147767 TCAGCATCTATAGGCCAGAAAGTA 58.852 41.667 5.01 0.00 31.05 2.24
465 485 7.440856 ACCGTGAAAATACCGTTCTTACTTAAA 59.559 33.333 0.00 0.00 0.00 1.52
503 523 9.180678 CATAAATCGCTTCCCAATGTTTATAAC 57.819 33.333 0.00 0.00 0.00 1.89
513 533 3.278574 CTGGACATAAATCGCTTCCCAA 58.721 45.455 0.00 0.00 0.00 4.12
521 541 6.925610 TCAAATCTTCCTGGACATAAATCG 57.074 37.500 0.00 0.00 0.00 3.34
524 544 5.893255 CCCATCAAATCTTCCTGGACATAAA 59.107 40.000 0.00 0.00 0.00 1.40
530 550 2.511218 CTCCCCATCAAATCTTCCTGGA 59.489 50.000 0.00 0.00 0.00 3.86
557 577 2.173569 GGATGTGGCCTAGAACCAGAAT 59.826 50.000 3.32 2.99 38.04 2.40
558 578 1.559682 GGATGTGGCCTAGAACCAGAA 59.440 52.381 3.32 0.00 38.04 3.02
621 641 6.327934 CAAGCACCTCCAAATAAAGATCTTG 58.672 40.000 9.17 0.00 0.00 3.02
678 698 5.250235 AGATACTACCGATATGCCGATTG 57.750 43.478 0.00 0.00 0.00 2.67
690 710 3.231818 AGGACATTGGGAGATACTACCG 58.768 50.000 0.00 0.00 37.26 4.02
695 715 5.376625 TGCAAATAGGACATTGGGAGATAC 58.623 41.667 0.00 0.00 0.00 2.24
698 718 4.272489 CTTGCAAATAGGACATTGGGAGA 58.728 43.478 0.00 0.00 0.00 3.71
702 722 3.119029 CCACCTTGCAAATAGGACATTGG 60.119 47.826 9.96 3.26 36.58 3.16
714 734 2.655077 CTTCCACCCCCACCTTGCAA 62.655 60.000 0.00 0.00 0.00 4.08
721 741 2.036862 GACGTATATCTTCCACCCCCAC 59.963 54.545 0.00 0.00 0.00 4.61
725 745 3.244078 TGCATGACGTATATCTTCCACCC 60.244 47.826 0.00 0.00 0.00 4.61
726 746 3.990092 TGCATGACGTATATCTTCCACC 58.010 45.455 0.00 0.00 0.00 4.61
728 748 4.937201 ACTGCATGACGTATATCTTCCA 57.063 40.909 0.00 0.00 0.00 3.53
774 794 1.463553 CGCCCAAAGCTTCCCAAACT 61.464 55.000 0.00 0.00 40.39 2.66
786 806 1.109920 TAAGCTTGCCAACGCCCAAA 61.110 50.000 9.86 0.00 0.00 3.28
801 821 0.179045 ACATGGCGTCCCTGATAAGC 60.179 55.000 0.00 0.00 0.00 3.09
802 822 1.586422 CACATGGCGTCCCTGATAAG 58.414 55.000 0.00 0.00 0.00 1.73
839 859 9.967451 CACAGAGAAGATACTCTATTATCCCTA 57.033 37.037 0.00 0.00 44.18 3.53
852 872 5.900425 TGAGCTTCATCACAGAGAAGATAC 58.100 41.667 6.37 0.00 40.24 2.24
854 874 5.617528 ATGAGCTTCATCACAGAGAAGAT 57.382 39.130 6.37 0.00 42.56 2.40
928 950 0.178978 TGCCACCAATTGTACCAGCA 60.179 50.000 4.43 3.48 0.00 4.41
938 960 2.045926 GTCTCCGCTGCCACCAAT 60.046 61.111 0.00 0.00 0.00 3.16
1033 1055 0.689080 TTTGGTTTTCCTGCTGCCCA 60.689 50.000 0.00 0.00 41.38 5.36
1071 1093 2.691011 GGACAAAACAACAGGCCACTTA 59.309 45.455 5.01 0.00 0.00 2.24
1104 1126 6.493449 TGAAACGATGCATCAACATTTAGA 57.507 33.333 25.70 8.15 0.00 2.10
1176 1198 0.322997 ACGCCCCGATGAATTTTCCA 60.323 50.000 0.00 0.00 0.00 3.53
1206 1229 2.026641 ACATCCGGAATTTGCATGAGG 58.973 47.619 9.01 0.00 0.00 3.86
1252 1275 1.492599 GAGGAGCTTTAGGCCTTCCAT 59.507 52.381 20.29 7.45 43.05 3.41
1254 1277 0.181587 GGAGGAGCTTTAGGCCTTCC 59.818 60.000 12.58 12.18 43.05 3.46
1269 1292 0.548031 TGCATCCTAGGCTTTGGAGG 59.452 55.000 2.96 13.97 37.22 4.30
1374 1399 8.132362 CGTAGCAAGAATCTACACTCTTCTAAT 58.868 37.037 0.00 0.00 36.98 1.73
1383 1408 5.238006 ACTCTCGTAGCAAGAATCTACAC 57.762 43.478 0.00 0.00 36.98 2.90
1401 1426 5.021458 TCAATAGTTACCTTCCCGAACTCT 58.979 41.667 0.00 0.00 35.17 3.24
1469 1494 2.041755 GGAGAATTTGTCCTTCCCCAGT 59.958 50.000 5.35 0.00 0.00 4.00
1470 1495 2.621668 GGGAGAATTTGTCCTTCCCCAG 60.622 54.545 11.96 0.00 35.16 4.45
1479 1504 3.077359 CCACACAGAGGGAGAATTTGTC 58.923 50.000 0.00 0.00 0.00 3.18
1525 1552 7.773690 ACTTACATCGTTTGCTAGGGATTTAAT 59.226 33.333 0.00 0.00 0.00 1.40
1598 1625 0.829602 TTGGGCGAGGGATGCAAAAA 60.830 50.000 0.00 0.00 0.00 1.94
1599 1626 0.829602 TTTGGGCGAGGGATGCAAAA 60.830 50.000 0.00 0.00 0.00 2.44
1600 1627 0.829602 TTTTGGGCGAGGGATGCAAA 60.830 50.000 0.00 0.00 0.00 3.68
1634 1661 6.712549 CATGCATAAGATTATGTATCAGCGG 58.287 40.000 11.71 0.43 42.17 5.52
1635 1662 6.190264 GCATGCATAAGATTATGTATCAGCG 58.810 40.000 14.21 4.57 42.17 5.18
1642 1669 3.189910 CGCTGGCATGCATAAGATTATGT 59.810 43.478 21.36 0.00 41.92 2.29
1782 1811 6.745116 TCTAGTTTCGAAGATCTTGTTGTGA 58.255 36.000 14.00 0.00 35.04 3.58
1786 1815 6.342111 GGGATCTAGTTTCGAAGATCTTGTT 58.658 40.000 14.00 7.76 44.94 2.83
1825 1854 2.012937 ACGTGAAAAAGGTGTCGTCA 57.987 45.000 0.00 0.00 0.00 4.35
1851 1881 9.162764 GTGATAGTTTACATAGTCACATGGTTT 57.837 33.333 0.00 0.00 36.78 3.27
1852 1882 7.491372 CGTGATAGTTTACATAGTCACATGGTT 59.509 37.037 0.00 0.00 36.63 3.67
1987 2026 2.545113 CCGATGGTAGACGGTGGTATTG 60.545 54.545 0.00 0.00 43.53 1.90
2037 2076 2.224185 GGTCATGCCATGTCGGTACATA 60.224 50.000 4.31 0.00 44.70 2.29
2039 2078 0.107897 GGTCATGCCATGTCGGTACA 60.108 55.000 4.31 0.00 40.69 2.90
2049 2088 0.184692 TTCACAAGTGGGTCATGCCA 59.815 50.000 8.20 0.00 39.65 4.92
2064 2103 3.442273 TGACCCACAAAGTTCTGTTTCAC 59.558 43.478 0.00 0.00 0.00 3.18
2070 2109 1.270550 GGCATGACCCACAAAGTTCTG 59.729 52.381 0.00 0.00 0.00 3.02
2071 2110 1.620822 GGCATGACCCACAAAGTTCT 58.379 50.000 0.00 0.00 0.00 3.01
2165 2205 1.392168 CATGGTACTTTACGCACCACG 59.608 52.381 0.00 0.00 44.77 4.94
2178 2218 6.476243 ACTTCAACGTAAATGTCATGGTAC 57.524 37.500 0.00 0.00 0.00 3.34
2195 2235 2.835764 AGCATACCCTCGGTAACTTCAA 59.164 45.455 0.00 0.00 41.85 2.69
2205 2246 4.003648 AGAAGTTGAAAAGCATACCCTCG 58.996 43.478 0.00 0.00 0.00 4.63
2215 2256 7.934457 TGATCTGAGGAAAAGAAGTTGAAAAG 58.066 34.615 0.00 0.00 0.00 2.27
2235 2276 6.205853 TGCAAACACCGTAGTAATTTTGATCT 59.794 34.615 0.00 0.00 0.00 2.75
2279 2320 9.872721 TGTGTAAATAACATGGTAATTCGACTA 57.127 29.630 0.00 0.00 41.10 2.59
2357 2400 0.792640 GACAACTCATGCAGACACGG 59.207 55.000 0.00 0.00 0.00 4.94
2365 2410 1.805869 ACAGAGCTGACAACTCATGC 58.194 50.000 8.51 0.00 36.58 4.06
2374 2419 4.810790 AGTATACACACAACAGAGCTGAC 58.189 43.478 5.50 0.00 0.00 3.51
2423 2468 4.694037 ACAACGCCATTACTTTCTTACTCC 59.306 41.667 0.00 0.00 0.00 3.85
2425 2470 6.038936 ACAAACAACGCCATTACTTTCTTACT 59.961 34.615 0.00 0.00 0.00 2.24
2428 2473 5.257082 ACAAACAACGCCATTACTTTCTT 57.743 34.783 0.00 0.00 0.00 2.52
2430 2475 4.609708 CGTACAAACAACGCCATTACTTTC 59.390 41.667 0.00 0.00 33.04 2.62
2436 2481 1.941294 TCACGTACAAACAACGCCATT 59.059 42.857 0.00 0.00 44.04 3.16
2437 2482 1.529438 CTCACGTACAAACAACGCCAT 59.471 47.619 0.00 0.00 44.04 4.40
2438 2483 0.931702 CTCACGTACAAACAACGCCA 59.068 50.000 0.00 0.00 44.04 5.69
2439 2484 0.932399 ACTCACGTACAAACAACGCC 59.068 50.000 0.00 0.00 44.04 5.68
2440 2485 2.724744 AACTCACGTACAAACAACGC 57.275 45.000 0.00 0.00 44.04 4.84
2441 2486 5.564213 TGATAACTCACGTACAAACAACG 57.436 39.130 0.00 0.00 45.64 4.10
2442 2487 5.176958 AGCTGATAACTCACGTACAAACAAC 59.823 40.000 0.00 0.00 0.00 3.32
2443 2488 5.294356 AGCTGATAACTCACGTACAAACAA 58.706 37.500 0.00 0.00 0.00 2.83
2444 2489 4.878439 AGCTGATAACTCACGTACAAACA 58.122 39.130 0.00 0.00 0.00 2.83
2445 2490 5.061064 CAGAGCTGATAACTCACGTACAAAC 59.939 44.000 0.00 0.00 36.58 2.93
2446 2491 5.161358 CAGAGCTGATAACTCACGTACAAA 58.839 41.667 0.00 0.00 36.58 2.83
2447 2492 4.217767 ACAGAGCTGATAACTCACGTACAA 59.782 41.667 4.21 0.00 36.58 2.41
2448 2493 3.756963 ACAGAGCTGATAACTCACGTACA 59.243 43.478 4.21 0.00 36.58 2.90
2449 2494 4.358494 ACAGAGCTGATAACTCACGTAC 57.642 45.455 4.21 0.00 36.58 3.67
2450 2495 6.495706 CATAACAGAGCTGATAACTCACGTA 58.504 40.000 4.21 0.00 36.58 3.57
2451 2496 3.944055 AACAGAGCTGATAACTCACGT 57.056 42.857 4.21 0.00 36.58 4.49
2452 2497 4.208047 GCATAACAGAGCTGATAACTCACG 59.792 45.833 4.21 0.00 36.58 4.35
2453 2498 4.208047 CGCATAACAGAGCTGATAACTCAC 59.792 45.833 4.21 0.00 36.58 3.51
2454 2499 4.142160 ACGCATAACAGAGCTGATAACTCA 60.142 41.667 4.21 0.00 36.58 3.41
2455 2500 4.363999 ACGCATAACAGAGCTGATAACTC 58.636 43.478 4.21 0.00 0.00 3.01
2456 2501 4.392921 ACGCATAACAGAGCTGATAACT 57.607 40.909 4.21 0.00 0.00 2.24
2457 2502 9.569167 TTATATACGCATAACAGAGCTGATAAC 57.431 33.333 4.21 0.00 0.00 1.89
2458 2503 9.569167 GTTATATACGCATAACAGAGCTGATAA 57.431 33.333 4.21 0.00 39.92 1.75
2459 2504 8.188799 GGTTATATACGCATAACAGAGCTGATA 58.811 37.037 4.21 0.00 41.29 2.15
2460 2505 7.036220 GGTTATATACGCATAACAGAGCTGAT 58.964 38.462 4.21 0.00 41.29 2.90
2461 2506 6.015772 TGGTTATATACGCATAACAGAGCTGA 60.016 38.462 4.21 0.00 41.29 4.26
2462 2507 6.156519 TGGTTATATACGCATAACAGAGCTG 58.843 40.000 13.80 0.00 41.29 4.24
2463 2508 6.340962 TGGTTATATACGCATAACAGAGCT 57.659 37.500 13.80 0.00 41.29 4.09
2464 2509 7.974501 AGTATGGTTATATACGCATAACAGAGC 59.025 37.037 13.80 0.00 41.29 4.09
2472 2517 8.879759 GTGCAAATAGTATGGTTATATACGCAT 58.120 33.333 0.00 0.00 38.32 4.73
2473 2518 7.873505 TGTGCAAATAGTATGGTTATATACGCA 59.126 33.333 0.00 0.00 38.32 5.24
2474 2519 8.246908 TGTGCAAATAGTATGGTTATATACGC 57.753 34.615 0.00 0.00 38.32 4.42
2486 2531 9.959721 CCCCTATAACTTATGTGCAAATAGTAT 57.040 33.333 0.00 0.53 0.00 2.12
2487 2532 8.940982 ACCCCTATAACTTATGTGCAAATAGTA 58.059 33.333 0.00 0.00 0.00 1.82
2488 2533 7.812306 ACCCCTATAACTTATGTGCAAATAGT 58.188 34.615 0.00 0.00 0.00 2.12
2489 2534 9.959721 ATACCCCTATAACTTATGTGCAAATAG 57.040 33.333 0.00 0.00 0.00 1.73
2490 2535 9.733556 CATACCCCTATAACTTATGTGCAAATA 57.266 33.333 0.00 0.00 0.00 1.40
2491 2536 8.224720 ACATACCCCTATAACTTATGTGCAAAT 58.775 33.333 0.00 0.00 33.19 2.32
2492 2537 7.579105 ACATACCCCTATAACTTATGTGCAAA 58.421 34.615 0.00 0.00 33.19 3.68
2493 2538 7.144234 ACATACCCCTATAACTTATGTGCAA 57.856 36.000 0.00 0.00 33.19 4.08
2494 2539 6.757173 ACATACCCCTATAACTTATGTGCA 57.243 37.500 0.00 0.00 33.19 4.57
2495 2540 8.459911 AAAACATACCCCTATAACTTATGTGC 57.540 34.615 0.00 0.00 34.39 4.57
2508 2553 9.772973 GAAAAAGTTATTGAAAAACATACCCCT 57.227 29.630 0.00 0.00 0.00 4.79
2509 2554 8.995220 GGAAAAAGTTATTGAAAAACATACCCC 58.005 33.333 0.00 0.00 0.00 4.95
2510 2555 9.549078 TGGAAAAAGTTATTGAAAAACATACCC 57.451 29.630 0.00 0.00 0.00 3.69
2513 2558 9.771534 CCCTGGAAAAAGTTATTGAAAAACATA 57.228 29.630 0.00 0.00 0.00 2.29
2514 2559 7.228507 GCCCTGGAAAAAGTTATTGAAAAACAT 59.771 33.333 0.00 0.00 0.00 2.71
2515 2560 6.540551 GCCCTGGAAAAAGTTATTGAAAAACA 59.459 34.615 0.00 0.00 0.00 2.83
2516 2561 6.540551 TGCCCTGGAAAAAGTTATTGAAAAAC 59.459 34.615 0.00 0.00 0.00 2.43
2517 2562 6.653989 TGCCCTGGAAAAAGTTATTGAAAAA 58.346 32.000 0.00 0.00 0.00 1.94
2518 2563 6.240549 TGCCCTGGAAAAAGTTATTGAAAA 57.759 33.333 0.00 0.00 0.00 2.29
2519 2564 5.878406 TGCCCTGGAAAAAGTTATTGAAA 57.122 34.783 0.00 0.00 0.00 2.69
2520 2565 5.878406 TTGCCCTGGAAAAAGTTATTGAA 57.122 34.783 0.00 0.00 0.00 2.69
2521 2566 5.878406 TTTGCCCTGGAAAAAGTTATTGA 57.122 34.783 0.00 0.00 0.00 2.57
2522 2567 6.544038 CTTTTGCCCTGGAAAAAGTTATTG 57.456 37.500 17.86 0.00 42.74 1.90
2529 2574 3.775316 TGGTAACTTTTGCCCTGGAAAAA 59.225 39.130 2.15 2.15 34.10 1.94
2530 2575 3.133183 GTGGTAACTTTTGCCCTGGAAAA 59.867 43.478 0.00 0.00 34.10 2.29
2531 2576 2.696187 GTGGTAACTTTTGCCCTGGAAA 59.304 45.455 0.00 0.00 34.10 3.13
2532 2577 2.312390 GTGGTAACTTTTGCCCTGGAA 58.688 47.619 0.00 0.00 34.10 3.53
2533 2578 1.816183 CGTGGTAACTTTTGCCCTGGA 60.816 52.381 0.00 0.00 34.10 3.86
2534 2579 0.596082 CGTGGTAACTTTTGCCCTGG 59.404 55.000 0.00 0.00 34.10 4.45
2535 2580 0.596082 CCGTGGTAACTTTTGCCCTG 59.404 55.000 0.00 0.00 34.10 4.45
2536 2581 0.184211 ACCGTGGTAACTTTTGCCCT 59.816 50.000 0.00 0.00 34.10 5.19
2537 2582 0.312729 CACCGTGGTAACTTTTGCCC 59.687 55.000 0.00 0.00 34.10 5.36
2538 2583 1.026584 ACACCGTGGTAACTTTTGCC 58.973 50.000 3.03 0.00 35.79 4.52
2539 2584 2.855660 AACACCGTGGTAACTTTTGC 57.144 45.000 3.03 0.00 37.61 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.