Multiple sequence alignment - TraesCS5D01G113600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G113600 chr5D 100.000 4399 0 0 1 4399 131504239 131508637 0.000000e+00 8124.0
1 TraesCS5D01G113600 chr5B 96.701 2637 53 12 465 3092 143293881 143296492 0.000000e+00 4357.0
2 TraesCS5D01G113600 chr5B 97.200 750 15 4 3092 3841 143296587 143297330 0.000000e+00 1264.0
3 TraesCS5D01G113600 chr5B 94.558 294 8 5 3939 4232 143300800 143301085 8.680000e-122 448.0
4 TraesCS5D01G113600 chr5B 92.437 119 9 0 4281 4399 143301075 143301193 2.100000e-38 171.0
5 TraesCS5D01G113600 chr5B 93.902 82 3 1 3857 3938 143298533 143298612 5.970000e-24 122.0
6 TraesCS5D01G113600 chr5A 96.070 1654 46 7 2158 3811 151734431 151732797 0.000000e+00 2676.0
7 TraesCS5D01G113600 chr5A 94.142 1690 85 6 472 2158 151736146 151734468 0.000000e+00 2560.0
8 TraesCS5D01G113600 chr3D 92.824 432 21 5 1 431 396474330 396473908 6.250000e-173 617.0
9 TraesCS5D01G113600 chr2D 93.220 118 8 0 293 410 469945175 469945058 1.630000e-39 174.0
10 TraesCS5D01G113600 chr2D 87.179 78 5 4 146 218 634563819 634563742 2.820000e-12 84.2
11 TraesCS5D01G113600 chr1D 80.000 255 28 9 174 408 415669781 415669530 2.720000e-37 167.0
12 TraesCS5D01G113600 chr7D 88.462 78 4 4 146 218 531993638 531993561 6.060000e-14 89.8
13 TraesCS5D01G113600 chr7D 85.897 78 6 2 146 218 550899668 550899591 1.310000e-10 78.7
14 TraesCS5D01G113600 chr7B 87.179 78 5 3 146 218 297181536 297181613 2.820000e-12 84.2
15 TraesCS5D01G113600 chr6D 87.179 78 5 4 146 218 429435841 429435918 2.820000e-12 84.2
16 TraesCS5D01G113600 chr6D 77.576 165 14 17 693 851 359532632 359532485 1.310000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G113600 chr5D 131504239 131508637 4398 False 8124.0 8124 100.0000 1 4399 1 chr5D.!!$F1 4398
1 TraesCS5D01G113600 chr5B 143293881 143301193 7312 False 1272.4 4357 94.9596 465 4399 5 chr5B.!!$F1 3934
2 TraesCS5D01G113600 chr5A 151732797 151736146 3349 True 2618.0 2676 95.1060 472 3811 2 chr5A.!!$R1 3339

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
190 191 0.035820 TACGTGAAACCCAGCCATCC 60.036 55.000 0.00 0.00 0.0 3.51 F
248 249 0.036952 CCCTCTGCGAGCTCTGAAAA 60.037 55.000 12.85 0.00 0.0 2.29 F
362 363 0.108138 AGAGGATTTGTTCGGGAGCG 60.108 55.000 0.00 0.00 0.0 5.03 F
363 364 0.108329 GAGGATTTGTTCGGGAGCGA 60.108 55.000 0.00 0.00 0.0 4.93 F
364 365 0.108138 AGGATTTGTTCGGGAGCGAG 60.108 55.000 0.00 0.00 0.0 5.03 F
365 366 0.108329 GGATTTGTTCGGGAGCGAGA 60.108 55.000 0.00 0.00 0.0 4.04 F
390 391 0.168128 CGGTCAAGAATCCAAACGCC 59.832 55.000 0.00 0.00 0.0 5.68 F
592 593 0.845102 TTTCCTCTTCCTCCCACCCC 60.845 60.000 0.00 0.00 0.0 4.95 F
1466 1478 1.202698 GGGGTATGGTGAGCTCATGTC 60.203 57.143 21.47 13.09 0.0 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1437 1442 2.634940 CTCACCATACCCCCTCACTATG 59.365 54.545 0.00 0.0 0.00 2.23 R
1466 1478 3.512680 GGAACCAAGTATCACTCTCACG 58.487 50.000 0.00 0.0 0.00 4.35 R
2304 2354 3.433598 CGACCAAACCCAGATCATACCAT 60.434 47.826 0.00 0.0 0.00 3.55 R
2392 2442 9.552114 CAGACAGTCAAACATAAAGAATGAATC 57.448 33.333 2.66 0.0 39.07 2.52 R
2438 2488 2.820178 TCAGAAGACAGATGGGTAGCA 58.180 47.619 0.00 0.0 0.00 3.49 R
2737 2787 4.630644 AGATGCTCTCAAGGAAGAAACA 57.369 40.909 0.00 0.0 0.00 2.83 R
2777 2827 8.458573 AAACAAGTACTGAAATGGTTATCACA 57.541 30.769 0.00 0.0 0.00 3.58 R
2960 3010 2.491693 GACTCAGCTCACACTCTAAGCT 59.508 50.000 0.00 0.0 46.98 3.74 R
3828 3973 1.542472 TGTTGCATGTTGGAGATGCTG 59.458 47.619 10.73 0.0 45.45 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 4.475135 GCGAGGGCAAGGGAGGAC 62.475 72.222 0.00 0.00 39.62 3.85
45 46 4.148825 CGAGGGCAAGGGAGGACG 62.149 72.222 0.00 0.00 0.00 4.79
46 47 3.787001 GAGGGCAAGGGAGGACGG 61.787 72.222 0.00 0.00 0.00 4.79
49 50 2.686106 GGCAAGGGAGGACGGGTA 60.686 66.667 0.00 0.00 0.00 3.69
50 51 2.732619 GGCAAGGGAGGACGGGTAG 61.733 68.421 0.00 0.00 0.00 3.18
51 52 2.901042 CAAGGGAGGACGGGTAGC 59.099 66.667 0.00 0.00 0.00 3.58
52 53 2.758737 AAGGGAGGACGGGTAGCG 60.759 66.667 0.00 0.00 0.00 4.26
53 54 3.597086 AAGGGAGGACGGGTAGCGT 62.597 63.158 0.00 0.00 0.00 5.07
54 55 3.525545 GGGAGGACGGGTAGCGTC 61.526 72.222 0.00 0.00 35.82 5.19
55 56 3.885521 GGAGGACGGGTAGCGTCG 61.886 72.222 0.00 0.00 37.26 5.12
56 57 3.885521 GAGGACGGGTAGCGTCGG 61.886 72.222 0.00 0.00 37.26 4.79
62 63 4.203076 GGGTAGCGTCGGCGACAT 62.203 66.667 35.62 26.19 45.36 3.06
63 64 2.954868 GGTAGCGTCGGCGACATG 60.955 66.667 35.62 23.05 45.36 3.21
64 65 2.202570 GTAGCGTCGGCGACATGT 60.203 61.111 35.62 22.57 43.35 3.21
65 66 1.804326 GTAGCGTCGGCGACATGTT 60.804 57.895 35.62 21.97 43.35 2.71
66 67 1.803922 TAGCGTCGGCGACATGTTG 60.804 57.895 35.62 21.66 46.35 3.33
67 68 4.147322 GCGTCGGCGACATGTTGG 62.147 66.667 35.62 20.98 41.33 3.77
68 69 2.431771 CGTCGGCGACATGTTGGA 60.432 61.111 35.62 1.71 41.33 3.53
69 70 2.444624 CGTCGGCGACATGTTGGAG 61.445 63.158 35.62 15.81 41.33 3.86
70 71 1.080093 GTCGGCGACATGTTGGAGA 60.080 57.895 33.07 3.35 32.09 3.71
71 72 1.078759 GTCGGCGACATGTTGGAGAG 61.079 60.000 33.07 0.00 32.09 3.20
72 73 1.215382 CGGCGACATGTTGGAGAGA 59.785 57.895 15.02 0.00 0.00 3.10
73 74 0.803768 CGGCGACATGTTGGAGAGAG 60.804 60.000 15.02 0.00 0.00 3.20
74 75 0.532573 GGCGACATGTTGGAGAGAGA 59.467 55.000 15.02 0.00 0.00 3.10
75 76 1.470632 GGCGACATGTTGGAGAGAGAG 60.471 57.143 15.02 0.00 0.00 3.20
76 77 1.919918 CGACATGTTGGAGAGAGAGC 58.080 55.000 5.04 0.00 0.00 4.09
77 78 1.476085 CGACATGTTGGAGAGAGAGCT 59.524 52.381 5.04 0.00 0.00 4.09
78 79 2.685388 CGACATGTTGGAGAGAGAGCTA 59.315 50.000 5.04 0.00 0.00 3.32
79 80 3.243035 CGACATGTTGGAGAGAGAGCTAG 60.243 52.174 5.04 0.00 0.00 3.42
80 81 3.030291 ACATGTTGGAGAGAGAGCTAGG 58.970 50.000 0.00 0.00 0.00 3.02
81 82 2.151502 TGTTGGAGAGAGAGCTAGGG 57.848 55.000 0.00 0.00 0.00 3.53
82 83 1.359474 TGTTGGAGAGAGAGCTAGGGT 59.641 52.381 0.00 0.00 0.00 4.34
83 84 2.225394 TGTTGGAGAGAGAGCTAGGGTT 60.225 50.000 0.00 0.00 0.00 4.11
84 85 3.011369 TGTTGGAGAGAGAGCTAGGGTTA 59.989 47.826 0.00 0.00 0.00 2.85
85 86 3.586470 TGGAGAGAGAGCTAGGGTTAG 57.414 52.381 0.00 0.00 0.00 2.34
86 87 2.175931 TGGAGAGAGAGCTAGGGTTAGG 59.824 54.545 0.00 0.00 0.00 2.69
87 88 2.490168 GGAGAGAGAGCTAGGGTTAGGG 60.490 59.091 0.00 0.00 0.00 3.53
88 89 2.444010 GAGAGAGAGCTAGGGTTAGGGA 59.556 54.545 0.00 0.00 0.00 4.20
89 90 2.860041 AGAGAGAGCTAGGGTTAGGGAA 59.140 50.000 0.00 0.00 0.00 3.97
90 91 3.117284 AGAGAGAGCTAGGGTTAGGGAAG 60.117 52.174 0.00 0.00 0.00 3.46
91 92 2.090999 AGAGAGCTAGGGTTAGGGAAGG 60.091 54.545 0.00 0.00 0.00 3.46
92 93 1.938069 AGAGCTAGGGTTAGGGAAGGA 59.062 52.381 0.00 0.00 0.00 3.36
93 94 2.090999 AGAGCTAGGGTTAGGGAAGGAG 60.091 54.545 0.00 0.00 0.00 3.69
94 95 1.938069 AGCTAGGGTTAGGGAAGGAGA 59.062 52.381 0.00 0.00 0.00 3.71
95 96 2.318207 AGCTAGGGTTAGGGAAGGAGAA 59.682 50.000 0.00 0.00 0.00 2.87
96 97 3.113043 GCTAGGGTTAGGGAAGGAGAAA 58.887 50.000 0.00 0.00 0.00 2.52
97 98 3.522343 GCTAGGGTTAGGGAAGGAGAAAA 59.478 47.826 0.00 0.00 0.00 2.29
98 99 4.018688 GCTAGGGTTAGGGAAGGAGAAAAA 60.019 45.833 0.00 0.00 0.00 1.94
99 100 4.659529 AGGGTTAGGGAAGGAGAAAAAG 57.340 45.455 0.00 0.00 0.00 2.27
100 101 3.333980 AGGGTTAGGGAAGGAGAAAAAGG 59.666 47.826 0.00 0.00 0.00 3.11
101 102 3.332783 GGGTTAGGGAAGGAGAAAAAGGA 59.667 47.826 0.00 0.00 0.00 3.36
102 103 4.202641 GGGTTAGGGAAGGAGAAAAAGGAA 60.203 45.833 0.00 0.00 0.00 3.36
103 104 5.010933 GGTTAGGGAAGGAGAAAAAGGAAG 58.989 45.833 0.00 0.00 0.00 3.46
104 105 3.816398 AGGGAAGGAGAAAAAGGAAGG 57.184 47.619 0.00 0.00 0.00 3.46
105 106 2.380249 AGGGAAGGAGAAAAAGGAAGGG 59.620 50.000 0.00 0.00 0.00 3.95
106 107 2.557676 GGGAAGGAGAAAAAGGAAGGGG 60.558 54.545 0.00 0.00 0.00 4.79
107 108 2.557676 GGAAGGAGAAAAAGGAAGGGGG 60.558 54.545 0.00 0.00 0.00 5.40
108 109 2.149521 AGGAGAAAAAGGAAGGGGGA 57.850 50.000 0.00 0.00 0.00 4.81
109 110 2.439265 AGGAGAAAAAGGAAGGGGGAA 58.561 47.619 0.00 0.00 0.00 3.97
110 111 2.380249 AGGAGAAAAAGGAAGGGGGAAG 59.620 50.000 0.00 0.00 0.00 3.46
111 112 2.110188 GGAGAAAAAGGAAGGGGGAAGT 59.890 50.000 0.00 0.00 0.00 3.01
112 113 3.157881 GAGAAAAAGGAAGGGGGAAGTG 58.842 50.000 0.00 0.00 0.00 3.16
113 114 2.789399 AGAAAAAGGAAGGGGGAAGTGA 59.211 45.455 0.00 0.00 0.00 3.41
114 115 2.980246 AAAAGGAAGGGGGAAGTGAG 57.020 50.000 0.00 0.00 0.00 3.51
115 116 1.076438 AAAGGAAGGGGGAAGTGAGG 58.924 55.000 0.00 0.00 0.00 3.86
116 117 0.196118 AAGGAAGGGGGAAGTGAGGA 59.804 55.000 0.00 0.00 0.00 3.71
117 118 0.252927 AGGAAGGGGGAAGTGAGGAG 60.253 60.000 0.00 0.00 0.00 3.69
118 119 0.252742 GGAAGGGGGAAGTGAGGAGA 60.253 60.000 0.00 0.00 0.00 3.71
119 120 1.199615 GAAGGGGGAAGTGAGGAGAG 58.800 60.000 0.00 0.00 0.00 3.20
120 121 0.252927 AAGGGGGAAGTGAGGAGAGG 60.253 60.000 0.00 0.00 0.00 3.69
121 122 1.156322 AGGGGGAAGTGAGGAGAGGA 61.156 60.000 0.00 0.00 0.00 3.71
122 123 0.689412 GGGGGAAGTGAGGAGAGGAG 60.689 65.000 0.00 0.00 0.00 3.69
123 124 0.689412 GGGGAAGTGAGGAGAGGAGG 60.689 65.000 0.00 0.00 0.00 4.30
124 125 0.336737 GGGAAGTGAGGAGAGGAGGA 59.663 60.000 0.00 0.00 0.00 3.71
125 126 1.687996 GGGAAGTGAGGAGAGGAGGAG 60.688 61.905 0.00 0.00 0.00 3.69
126 127 1.286553 GGAAGTGAGGAGAGGAGGAGA 59.713 57.143 0.00 0.00 0.00 3.71
127 128 2.654863 GAAGTGAGGAGAGGAGGAGAG 58.345 57.143 0.00 0.00 0.00 3.20
128 129 0.926293 AGTGAGGAGAGGAGGAGAGG 59.074 60.000 0.00 0.00 0.00 3.69
129 130 0.923358 GTGAGGAGAGGAGGAGAGGA 59.077 60.000 0.00 0.00 0.00 3.71
130 131 1.133792 GTGAGGAGAGGAGGAGAGGAG 60.134 61.905 0.00 0.00 0.00 3.69
131 132 0.478507 GAGGAGAGGAGGAGAGGAGG 59.521 65.000 0.00 0.00 0.00 4.30
132 133 1.152546 GGAGAGGAGGAGAGGAGGC 60.153 68.421 0.00 0.00 0.00 4.70
133 134 1.152546 GAGAGGAGGAGAGGAGGCC 60.153 68.421 0.00 0.00 0.00 5.19
134 135 2.520741 GAGGAGGAGAGGAGGCCG 60.521 72.222 0.00 0.00 0.00 6.13
135 136 3.024356 AGGAGGAGAGGAGGCCGA 61.024 66.667 0.00 0.00 0.00 5.54
136 137 2.835895 GGAGGAGAGGAGGCCGAC 60.836 72.222 0.00 0.00 0.00 4.79
137 138 3.213402 GAGGAGAGGAGGCCGACG 61.213 72.222 0.00 0.00 0.00 5.12
171 172 4.171186 GGAACCCTCCTCACCCAT 57.829 61.111 0.00 0.00 38.88 4.00
172 173 3.334769 GGAACCCTCCTCACCCATA 57.665 57.895 0.00 0.00 38.88 2.74
173 174 0.837940 GGAACCCTCCTCACCCATAC 59.162 60.000 0.00 0.00 38.88 2.39
174 175 0.464452 GAACCCTCCTCACCCATACG 59.536 60.000 0.00 0.00 0.00 3.06
175 176 0.252558 AACCCTCCTCACCCATACGT 60.253 55.000 0.00 0.00 0.00 3.57
176 177 0.976073 ACCCTCCTCACCCATACGTG 60.976 60.000 0.00 0.00 34.93 4.49
177 178 0.686441 CCCTCCTCACCCATACGTGA 60.686 60.000 0.00 0.00 40.44 4.35
178 179 1.191535 CCTCCTCACCCATACGTGAA 58.808 55.000 0.00 0.00 42.06 3.18
179 180 1.553248 CCTCCTCACCCATACGTGAAA 59.447 52.381 0.00 0.00 42.06 2.69
180 181 2.618053 CTCCTCACCCATACGTGAAAC 58.382 52.381 0.00 0.00 42.06 2.78
181 182 1.276989 TCCTCACCCATACGTGAAACC 59.723 52.381 0.00 0.00 42.06 3.27
182 183 1.677820 CCTCACCCATACGTGAAACCC 60.678 57.143 0.00 0.00 42.06 4.11
183 184 1.002659 CTCACCCATACGTGAAACCCA 59.997 52.381 0.00 0.00 42.06 4.51
184 185 1.002659 TCACCCATACGTGAAACCCAG 59.997 52.381 0.00 0.00 39.78 4.45
185 186 0.322187 ACCCATACGTGAAACCCAGC 60.322 55.000 0.00 0.00 0.00 4.85
186 187 1.029947 CCCATACGTGAAACCCAGCC 61.030 60.000 0.00 0.00 0.00 4.85
187 188 0.322098 CCATACGTGAAACCCAGCCA 60.322 55.000 0.00 0.00 0.00 4.75
188 189 1.681780 CCATACGTGAAACCCAGCCAT 60.682 52.381 0.00 0.00 0.00 4.40
189 190 1.670811 CATACGTGAAACCCAGCCATC 59.329 52.381 0.00 0.00 0.00 3.51
190 191 0.035820 TACGTGAAACCCAGCCATCC 60.036 55.000 0.00 0.00 0.00 3.51
191 192 1.303236 CGTGAAACCCAGCCATCCA 60.303 57.895 0.00 0.00 0.00 3.41
192 193 1.586154 CGTGAAACCCAGCCATCCAC 61.586 60.000 0.00 0.00 0.00 4.02
193 194 0.539438 GTGAAACCCAGCCATCCACA 60.539 55.000 0.00 0.00 0.00 4.17
194 195 0.539438 TGAAACCCAGCCATCCACAC 60.539 55.000 0.00 0.00 0.00 3.82
195 196 1.228862 AAACCCAGCCATCCACACC 60.229 57.895 0.00 0.00 0.00 4.16
196 197 2.017668 AAACCCAGCCATCCACACCA 62.018 55.000 0.00 0.00 0.00 4.17
197 198 2.044650 CCCAGCCATCCACACCAG 60.045 66.667 0.00 0.00 0.00 4.00
198 199 2.753043 CCAGCCATCCACACCAGC 60.753 66.667 0.00 0.00 0.00 4.85
199 200 2.753043 CAGCCATCCACACCAGCC 60.753 66.667 0.00 0.00 0.00 4.85
200 201 3.259314 AGCCATCCACACCAGCCA 61.259 61.111 0.00 0.00 0.00 4.75
201 202 3.064324 GCCATCCACACCAGCCAC 61.064 66.667 0.00 0.00 0.00 5.01
202 203 2.435663 CCATCCACACCAGCCACA 59.564 61.111 0.00 0.00 0.00 4.17
203 204 1.973281 CCATCCACACCAGCCACAC 60.973 63.158 0.00 0.00 0.00 3.82
204 205 1.228215 CATCCACACCAGCCACACA 60.228 57.895 0.00 0.00 0.00 3.72
205 206 1.228245 ATCCACACCAGCCACACAC 60.228 57.895 0.00 0.00 0.00 3.82
206 207 1.993701 ATCCACACCAGCCACACACA 61.994 55.000 0.00 0.00 0.00 3.72
207 208 2.480610 CCACACCAGCCACACACAC 61.481 63.158 0.00 0.00 0.00 3.82
208 209 1.748500 CACACCAGCCACACACACA 60.749 57.895 0.00 0.00 0.00 3.72
209 210 1.748879 ACACCAGCCACACACACAC 60.749 57.895 0.00 0.00 0.00 3.82
210 211 1.748500 CACCAGCCACACACACACA 60.749 57.895 0.00 0.00 0.00 3.72
211 212 1.748879 ACCAGCCACACACACACAC 60.749 57.895 0.00 0.00 0.00 3.82
212 213 2.708865 CAGCCACACACACACACG 59.291 61.111 0.00 0.00 0.00 4.49
213 214 2.106074 CAGCCACACACACACACGT 61.106 57.895 0.00 0.00 0.00 4.49
215 216 2.103647 GCCACACACACACACGTGA 61.104 57.895 25.01 0.00 46.80 4.35
216 217 1.640210 GCCACACACACACACGTGAA 61.640 55.000 25.01 0.00 46.80 3.18
217 218 0.799393 CCACACACACACACGTGAAA 59.201 50.000 25.01 0.00 46.80 2.69
218 219 1.400142 CCACACACACACACGTGAAAT 59.600 47.619 25.01 3.61 46.80 2.17
219 220 2.159448 CCACACACACACACGTGAAATT 60.159 45.455 25.01 0.00 46.80 1.82
220 221 3.097910 CACACACACACACGTGAAATTC 58.902 45.455 25.01 0.00 46.80 2.17
221 222 2.096819 ACACACACACACGTGAAATTCC 59.903 45.455 25.01 0.00 46.80 3.01
222 223 2.096657 CACACACACACGTGAAATTCCA 59.903 45.455 25.01 0.00 46.80 3.53
223 224 2.096819 ACACACACACGTGAAATTCCAC 59.903 45.455 25.01 0.00 46.80 4.02
224 225 1.673920 ACACACACGTGAAATTCCACC 59.326 47.619 25.01 0.00 46.80 4.61
225 226 1.001815 CACACACGTGAAATTCCACCC 60.002 52.381 25.01 0.00 46.80 4.61
226 227 1.133915 ACACACGTGAAATTCCACCCT 60.134 47.619 25.01 0.00 33.67 4.34
227 228 1.953686 CACACGTGAAATTCCACCCTT 59.046 47.619 25.01 0.00 33.67 3.95
228 229 1.953686 ACACGTGAAATTCCACCCTTG 59.046 47.619 25.01 0.00 33.67 3.61
229 230 0.958822 ACGTGAAATTCCACCCTTGC 59.041 50.000 0.00 0.00 33.67 4.01
230 231 0.243636 CGTGAAATTCCACCCTTGCC 59.756 55.000 0.00 0.00 33.67 4.52
231 232 0.608130 GTGAAATTCCACCCTTGCCC 59.392 55.000 0.00 0.00 0.00 5.36
232 233 0.486879 TGAAATTCCACCCTTGCCCT 59.513 50.000 0.00 0.00 0.00 5.19
233 234 1.186200 GAAATTCCACCCTTGCCCTC 58.814 55.000 0.00 0.00 0.00 4.30
234 235 0.786435 AAATTCCACCCTTGCCCTCT 59.214 50.000 0.00 0.00 0.00 3.69
235 236 0.040204 AATTCCACCCTTGCCCTCTG 59.960 55.000 0.00 0.00 0.00 3.35
236 237 2.505364 ATTCCACCCTTGCCCTCTGC 62.505 60.000 0.00 0.00 41.77 4.26
238 239 4.020617 CACCCTTGCCCTCTGCGA 62.021 66.667 0.00 0.00 45.60 5.10
242 243 2.511145 CTTGCCCTCTGCGAGCTC 60.511 66.667 2.73 2.73 44.40 4.09
243 244 2.999648 TTGCCCTCTGCGAGCTCT 61.000 61.111 12.85 0.00 45.60 4.09
244 245 3.306595 TTGCCCTCTGCGAGCTCTG 62.307 63.158 12.85 6.68 45.60 3.35
245 246 3.456365 GCCCTCTGCGAGCTCTGA 61.456 66.667 12.85 6.47 0.00 3.27
246 247 3.011635 GCCCTCTGCGAGCTCTGAA 62.012 63.158 12.85 0.00 0.00 3.02
247 248 1.593787 CCCTCTGCGAGCTCTGAAA 59.406 57.895 12.85 0.00 0.00 2.69
248 249 0.036952 CCCTCTGCGAGCTCTGAAAA 60.037 55.000 12.85 0.00 0.00 2.29
249 250 1.406614 CCCTCTGCGAGCTCTGAAAAT 60.407 52.381 12.85 0.00 0.00 1.82
250 251 2.354259 CCTCTGCGAGCTCTGAAAATT 58.646 47.619 12.85 0.00 0.00 1.82
251 252 3.525537 CCTCTGCGAGCTCTGAAAATTA 58.474 45.455 12.85 0.00 0.00 1.40
252 253 3.308323 CCTCTGCGAGCTCTGAAAATTAC 59.692 47.826 12.85 0.00 0.00 1.89
253 254 3.925379 TCTGCGAGCTCTGAAAATTACA 58.075 40.909 12.85 0.00 0.00 2.41
254 255 3.679980 TCTGCGAGCTCTGAAAATTACAC 59.320 43.478 12.85 0.00 0.00 2.90
255 256 2.411748 TGCGAGCTCTGAAAATTACACG 59.588 45.455 12.85 0.00 0.00 4.49
256 257 2.784665 GCGAGCTCTGAAAATTACACGC 60.785 50.000 12.85 1.69 36.06 5.34
257 258 2.532973 CGAGCTCTGAAAATTACACGCG 60.533 50.000 12.85 3.53 0.00 6.01
258 259 1.732259 AGCTCTGAAAATTACACGCGG 59.268 47.619 12.47 1.27 0.00 6.46
259 260 1.463444 GCTCTGAAAATTACACGCGGT 59.537 47.619 12.47 8.38 0.00 5.68
260 261 2.724839 GCTCTGAAAATTACACGCGGTG 60.725 50.000 12.47 9.20 39.75 4.94
261 262 1.801771 TCTGAAAATTACACGCGGTGG 59.198 47.619 12.47 1.38 37.94 4.61
262 263 0.238817 TGAAAATTACACGCGGTGGC 59.761 50.000 12.47 0.00 37.94 5.01
263 264 0.238817 GAAAATTACACGCGGTGGCA 59.761 50.000 12.47 0.00 37.94 4.92
264 265 0.239879 AAAATTACACGCGGTGGCAG 59.760 50.000 12.47 0.00 37.94 4.85
265 266 2.195123 AAATTACACGCGGTGGCAGC 62.195 55.000 12.47 6.62 37.94 5.25
266 267 3.605749 ATTACACGCGGTGGCAGCT 62.606 57.895 12.47 0.00 37.94 4.24
267 268 4.735132 TACACGCGGTGGCAGCTC 62.735 66.667 12.47 5.78 37.94 4.09
274 275 4.373116 GGTGGCAGCTCGGTTCGA 62.373 66.667 9.90 0.00 0.00 3.71
275 276 2.125512 GTGGCAGCTCGGTTCGAT 60.126 61.111 0.00 0.00 34.61 3.59
276 277 2.167861 GTGGCAGCTCGGTTCGATC 61.168 63.158 0.00 0.00 34.61 3.69
277 278 2.586357 GGCAGCTCGGTTCGATCC 60.586 66.667 2.15 2.15 34.61 3.36
285 286 3.834799 GGTTCGATCCGACGGCCT 61.835 66.667 9.66 0.00 34.89 5.19
286 287 2.183555 GTTCGATCCGACGGCCTT 59.816 61.111 9.66 0.00 34.89 4.35
287 288 2.165301 GTTCGATCCGACGGCCTTG 61.165 63.158 9.66 3.05 34.89 3.61
288 289 3.365291 TTCGATCCGACGGCCTTGG 62.365 63.158 9.66 1.27 34.89 3.61
289 290 4.143333 CGATCCGACGGCCTTGGT 62.143 66.667 9.66 0.00 0.00 3.67
290 291 2.202892 GATCCGACGGCCTTGGTC 60.203 66.667 9.66 0.00 0.00 4.02
291 292 3.000819 ATCCGACGGCCTTGGTCA 61.001 61.111 9.66 0.00 34.04 4.02
292 293 3.310860 ATCCGACGGCCTTGGTCAC 62.311 63.158 9.66 0.00 34.04 3.67
293 294 4.003788 CCGACGGCCTTGGTCACT 62.004 66.667 0.00 0.00 34.04 3.41
294 295 2.432628 CGACGGCCTTGGTCACTC 60.433 66.667 0.00 0.00 34.04 3.51
295 296 2.047179 GACGGCCTTGGTCACTCC 60.047 66.667 0.00 0.00 34.56 3.85
296 297 2.847234 ACGGCCTTGGTCACTCCA 60.847 61.111 0.00 0.00 45.60 3.86
303 304 3.686760 TGGTCACTCCAGAGCGAG 58.313 61.111 0.00 0.00 41.93 5.03
304 305 1.074951 TGGTCACTCCAGAGCGAGA 59.925 57.895 0.00 0.00 41.93 4.04
305 306 0.323816 TGGTCACTCCAGAGCGAGAT 60.324 55.000 0.00 0.00 41.93 2.75
306 307 0.383949 GGTCACTCCAGAGCGAGATC 59.616 60.000 0.00 0.00 35.97 2.75
307 308 0.383949 GTCACTCCAGAGCGAGATCC 59.616 60.000 0.00 0.00 33.83 3.36
308 309 1.098129 TCACTCCAGAGCGAGATCCG 61.098 60.000 0.00 0.00 42.21 4.18
309 310 1.098129 CACTCCAGAGCGAGATCCGA 61.098 60.000 7.64 0.00 41.76 4.55
310 311 1.098712 ACTCCAGAGCGAGATCCGAC 61.099 60.000 7.64 1.83 41.76 4.79
311 312 2.111932 CTCCAGAGCGAGATCCGACG 62.112 65.000 7.64 4.34 41.76 5.12
312 313 2.180862 CCAGAGCGAGATCCGACGA 61.181 63.158 0.00 0.00 41.76 4.20
313 314 1.010574 CAGAGCGAGATCCGACGAC 60.011 63.158 0.00 0.00 41.76 4.34
314 315 2.181521 AGAGCGAGATCCGACGACC 61.182 63.158 0.00 0.07 41.76 4.79
315 316 2.124653 AGCGAGATCCGACGACCT 60.125 61.111 0.00 0.00 41.76 3.85
316 317 2.024871 GCGAGATCCGACGACCTG 59.975 66.667 0.00 0.00 41.76 4.00
317 318 2.716244 CGAGATCCGACGACCTGG 59.284 66.667 0.00 0.00 41.76 4.45
318 319 1.818363 CGAGATCCGACGACCTGGA 60.818 63.158 0.00 0.00 41.76 3.86
320 321 1.033574 GAGATCCGACGACCTGGATT 58.966 55.000 0.00 0.00 44.92 3.01
321 322 1.409427 GAGATCCGACGACCTGGATTT 59.591 52.381 0.00 0.00 44.92 2.17
322 323 1.137086 AGATCCGACGACCTGGATTTG 59.863 52.381 0.00 0.00 44.92 2.32
323 324 0.902531 ATCCGACGACCTGGATTTGT 59.097 50.000 0.00 0.00 42.31 2.83
324 325 0.682852 TCCGACGACCTGGATTTGTT 59.317 50.000 0.00 0.00 0.00 2.83
325 326 1.076332 CCGACGACCTGGATTTGTTC 58.924 55.000 0.00 0.00 0.00 3.18
326 327 1.606994 CCGACGACCTGGATTTGTTCA 60.607 52.381 0.00 0.00 0.00 3.18
327 328 2.346803 CGACGACCTGGATTTGTTCAT 58.653 47.619 0.00 0.00 0.00 2.57
328 329 2.348666 CGACGACCTGGATTTGTTCATC 59.651 50.000 0.00 0.00 0.00 2.92
329 330 3.600388 GACGACCTGGATTTGTTCATCT 58.400 45.455 0.00 0.00 0.00 2.90
330 331 3.338249 ACGACCTGGATTTGTTCATCTG 58.662 45.455 0.00 0.00 0.00 2.90
331 332 2.679837 CGACCTGGATTTGTTCATCTGG 59.320 50.000 0.00 0.00 0.00 3.86
332 333 3.619733 CGACCTGGATTTGTTCATCTGGA 60.620 47.826 0.00 0.00 0.00 3.86
333 334 3.944015 GACCTGGATTTGTTCATCTGGAG 59.056 47.826 0.00 0.00 0.00 3.86
334 335 3.588842 ACCTGGATTTGTTCATCTGGAGA 59.411 43.478 0.00 0.00 0.00 3.71
335 336 4.229123 ACCTGGATTTGTTCATCTGGAGAT 59.771 41.667 0.00 0.00 34.56 2.75
336 337 4.820716 CCTGGATTTGTTCATCTGGAGATC 59.179 45.833 0.00 0.00 31.21 2.75
337 338 4.785301 TGGATTTGTTCATCTGGAGATCC 58.215 43.478 0.00 0.00 31.21 3.36
338 339 3.812053 GGATTTGTTCATCTGGAGATCCG 59.188 47.826 0.00 0.00 39.43 4.18
339 340 4.443457 GGATTTGTTCATCTGGAGATCCGA 60.443 45.833 0.00 0.00 39.43 4.55
340 341 3.526931 TTGTTCATCTGGAGATCCGAC 57.473 47.619 0.00 0.00 39.43 4.79
341 342 1.405463 TGTTCATCTGGAGATCCGACG 59.595 52.381 0.00 0.00 39.43 5.12
342 343 1.032794 TTCATCTGGAGATCCGACGG 58.967 55.000 7.84 7.84 39.43 4.79
343 344 0.182775 TCATCTGGAGATCCGACGGA 59.817 55.000 20.85 20.85 39.43 4.69
344 345 0.595588 CATCTGGAGATCCGACGGAG 59.404 60.000 22.99 7.49 39.43 4.63
345 346 0.474614 ATCTGGAGATCCGACGGAGA 59.525 55.000 22.99 12.93 39.43 3.71
346 347 0.179043 TCTGGAGATCCGACGGAGAG 60.179 60.000 22.99 12.05 39.43 3.20
347 348 1.152943 TGGAGATCCGACGGAGAGG 60.153 63.158 22.99 0.00 39.43 3.69
348 349 1.148723 GGAGATCCGACGGAGAGGA 59.851 63.158 22.99 0.00 41.12 3.71
349 350 0.250989 GGAGATCCGACGGAGAGGAT 60.251 60.000 22.99 4.46 46.67 3.24
350 351 1.611519 GAGATCCGACGGAGAGGATT 58.388 55.000 22.99 3.62 44.90 3.01
351 352 1.957877 GAGATCCGACGGAGAGGATTT 59.042 52.381 22.99 2.78 44.90 2.17
352 353 1.683917 AGATCCGACGGAGAGGATTTG 59.316 52.381 22.99 0.00 44.90 2.32
353 354 1.409427 GATCCGACGGAGAGGATTTGT 59.591 52.381 22.99 1.11 44.90 2.83
354 355 1.263356 TCCGACGGAGAGGATTTGTT 58.737 50.000 13.88 0.00 33.74 2.83
355 356 1.203994 TCCGACGGAGAGGATTTGTTC 59.796 52.381 13.88 0.00 33.74 3.18
356 357 1.269166 CGACGGAGAGGATTTGTTCG 58.731 55.000 0.00 0.00 0.00 3.95
357 358 1.641577 GACGGAGAGGATTTGTTCGG 58.358 55.000 0.00 0.00 0.00 4.30
358 359 0.249398 ACGGAGAGGATTTGTTCGGG 59.751 55.000 0.00 0.00 0.00 5.14
359 360 0.535335 CGGAGAGGATTTGTTCGGGA 59.465 55.000 0.00 0.00 0.00 5.14
360 361 1.471676 CGGAGAGGATTTGTTCGGGAG 60.472 57.143 0.00 0.00 0.00 4.30
361 362 1.657822 GAGAGGATTTGTTCGGGAGC 58.342 55.000 0.00 0.00 0.00 4.70
362 363 0.108138 AGAGGATTTGTTCGGGAGCG 60.108 55.000 0.00 0.00 0.00 5.03
363 364 0.108329 GAGGATTTGTTCGGGAGCGA 60.108 55.000 0.00 0.00 0.00 4.93
364 365 0.108138 AGGATTTGTTCGGGAGCGAG 60.108 55.000 0.00 0.00 0.00 5.03
365 366 0.108329 GGATTTGTTCGGGAGCGAGA 60.108 55.000 0.00 0.00 0.00 4.04
366 367 1.473434 GGATTTGTTCGGGAGCGAGAT 60.473 52.381 0.00 0.00 0.00 2.75
367 368 1.861575 GATTTGTTCGGGAGCGAGATC 59.138 52.381 0.00 0.00 0.00 2.75
368 369 0.108329 TTTGTTCGGGAGCGAGATCC 60.108 55.000 0.00 0.00 38.76 3.36
369 370 2.026301 GTTCGGGAGCGAGATCCG 59.974 66.667 0.98 0.00 44.59 4.18
371 372 2.900838 TCGGGAGCGAGATCCGAC 60.901 66.667 7.64 1.68 46.48 4.79
372 373 4.315122 CGGGAGCGAGATCCGACG 62.315 72.222 7.64 4.34 45.96 5.12
373 374 3.967335 GGGAGCGAGATCCGACGG 61.967 72.222 7.84 7.84 40.56 4.79
374 375 3.210528 GGAGCGAGATCCGACGGT 61.211 66.667 14.79 8.10 41.76 4.83
375 376 2.328639 GAGCGAGATCCGACGGTC 59.671 66.667 14.79 16.39 46.27 4.79
376 377 2.437895 AGCGAGATCCGACGGTCA 60.438 61.111 14.79 0.00 41.76 4.02
377 378 2.044555 AGCGAGATCCGACGGTCAA 61.045 57.895 14.79 0.00 41.76 3.18
378 379 1.586564 GCGAGATCCGACGGTCAAG 60.587 63.158 14.79 9.58 41.76 3.02
379 380 1.989966 GCGAGATCCGACGGTCAAGA 61.990 60.000 14.79 4.68 41.76 3.02
380 381 0.450583 CGAGATCCGACGGTCAAGAA 59.549 55.000 14.79 0.00 41.76 2.52
381 382 1.065701 CGAGATCCGACGGTCAAGAAT 59.934 52.381 14.79 0.00 41.76 2.40
382 383 2.733517 GAGATCCGACGGTCAAGAATC 58.266 52.381 14.79 8.29 0.00 2.52
383 384 1.409427 AGATCCGACGGTCAAGAATCC 59.591 52.381 14.79 0.00 0.00 3.01
384 385 1.136305 GATCCGACGGTCAAGAATCCA 59.864 52.381 14.79 0.00 0.00 3.41
385 386 0.970640 TCCGACGGTCAAGAATCCAA 59.029 50.000 14.79 0.00 0.00 3.53
386 387 1.345089 TCCGACGGTCAAGAATCCAAA 59.655 47.619 14.79 0.00 0.00 3.28
387 388 1.463444 CCGACGGTCAAGAATCCAAAC 59.537 52.381 5.48 0.00 0.00 2.93
388 389 1.126113 CGACGGTCAAGAATCCAAACG 59.874 52.381 9.10 0.00 0.00 3.60
389 390 0.872388 ACGGTCAAGAATCCAAACGC 59.128 50.000 0.00 0.00 0.00 4.84
390 391 0.168128 CGGTCAAGAATCCAAACGCC 59.832 55.000 0.00 0.00 0.00 5.68
391 392 1.534729 GGTCAAGAATCCAAACGCCT 58.465 50.000 0.00 0.00 0.00 5.52
392 393 1.200020 GGTCAAGAATCCAAACGCCTG 59.800 52.381 0.00 0.00 0.00 4.85
393 394 2.151202 GTCAAGAATCCAAACGCCTGA 58.849 47.619 0.00 0.00 0.00 3.86
394 395 2.749621 GTCAAGAATCCAAACGCCTGAT 59.250 45.455 0.00 0.00 0.00 2.90
395 396 2.749076 TCAAGAATCCAAACGCCTGATG 59.251 45.455 0.00 0.00 0.00 3.07
396 397 2.749076 CAAGAATCCAAACGCCTGATGA 59.251 45.455 0.00 0.00 0.00 2.92
397 398 2.636830 AGAATCCAAACGCCTGATGAG 58.363 47.619 0.00 0.00 0.00 2.90
398 399 1.672881 GAATCCAAACGCCTGATGAGG 59.327 52.381 0.00 0.00 43.19 3.86
411 412 5.747951 CCTGATGAGGCTTCATTTTACTC 57.252 43.478 13.14 0.28 44.01 2.59
412 413 5.435291 CCTGATGAGGCTTCATTTTACTCT 58.565 41.667 13.14 0.00 44.01 3.24
413 414 5.296283 CCTGATGAGGCTTCATTTTACTCTG 59.704 44.000 13.14 4.08 44.01 3.35
414 415 5.188434 TGATGAGGCTTCATTTTACTCTGG 58.812 41.667 13.14 0.00 44.01 3.86
415 416 4.908601 TGAGGCTTCATTTTACTCTGGA 57.091 40.909 0.00 0.00 0.00 3.86
416 417 4.579869 TGAGGCTTCATTTTACTCTGGAC 58.420 43.478 0.00 0.00 0.00 4.02
417 418 4.287067 TGAGGCTTCATTTTACTCTGGACT 59.713 41.667 0.00 0.00 0.00 3.85
418 419 4.837972 AGGCTTCATTTTACTCTGGACTC 58.162 43.478 0.00 0.00 0.00 3.36
419 420 4.534103 AGGCTTCATTTTACTCTGGACTCT 59.466 41.667 0.00 0.00 0.00 3.24
420 421 5.721960 AGGCTTCATTTTACTCTGGACTCTA 59.278 40.000 0.00 0.00 0.00 2.43
421 422 6.213600 AGGCTTCATTTTACTCTGGACTCTAA 59.786 38.462 0.00 0.00 0.00 2.10
422 423 7.051000 GGCTTCATTTTACTCTGGACTCTAAT 58.949 38.462 0.00 0.00 0.00 1.73
423 424 8.204836 GGCTTCATTTTACTCTGGACTCTAATA 58.795 37.037 0.00 0.00 0.00 0.98
424 425 9.601217 GCTTCATTTTACTCTGGACTCTAATAA 57.399 33.333 0.00 0.00 0.00 1.40
432 433 7.921041 ACTCTGGACTCTAATAATGGAATGA 57.079 36.000 0.00 0.00 0.00 2.57
433 434 8.503428 ACTCTGGACTCTAATAATGGAATGAT 57.497 34.615 0.00 0.00 0.00 2.45
434 435 9.607333 ACTCTGGACTCTAATAATGGAATGATA 57.393 33.333 0.00 0.00 0.00 2.15
435 436 9.868277 CTCTGGACTCTAATAATGGAATGATAC 57.132 37.037 0.00 0.00 0.00 2.24
436 437 8.816894 TCTGGACTCTAATAATGGAATGATACC 58.183 37.037 0.00 0.00 0.00 2.73
437 438 7.918076 TGGACTCTAATAATGGAATGATACCC 58.082 38.462 0.00 0.00 0.00 3.69
438 439 7.515861 TGGACTCTAATAATGGAATGATACCCA 59.484 37.037 0.00 0.00 36.79 4.51
439 440 8.383175 GGACTCTAATAATGGAATGATACCCAA 58.617 37.037 0.00 0.00 35.85 4.12
440 441 9.965902 GACTCTAATAATGGAATGATACCCAAT 57.034 33.333 0.00 0.00 35.85 3.16
441 442 9.965902 ACTCTAATAATGGAATGATACCCAATC 57.034 33.333 0.00 0.00 35.85 2.67
446 447 5.796424 ATGGAATGATACCCAATCTTTGC 57.204 39.130 0.00 0.00 39.25 3.68
447 448 3.631686 TGGAATGATACCCAATCTTTGCG 59.368 43.478 0.00 0.00 40.69 4.85
448 449 3.632145 GGAATGATACCCAATCTTTGCGT 59.368 43.478 0.00 0.00 33.37 5.24
449 450 4.819630 GGAATGATACCCAATCTTTGCGTA 59.180 41.667 0.00 0.00 33.37 4.42
450 451 5.473504 GGAATGATACCCAATCTTTGCGTAT 59.526 40.000 0.00 0.00 37.35 3.06
451 452 6.016276 GGAATGATACCCAATCTTTGCGTATT 60.016 38.462 0.59 0.00 35.42 1.89
452 453 6.560253 ATGATACCCAATCTTTGCGTATTC 57.440 37.500 0.59 0.00 35.42 1.75
453 454 4.509970 TGATACCCAATCTTTGCGTATTCG 59.490 41.667 0.59 0.00 35.42 3.34
592 593 0.845102 TTTCCTCTTCCTCCCACCCC 60.845 60.000 0.00 0.00 0.00 4.95
593 594 3.083997 CCTCTTCCTCCCACCCCG 61.084 72.222 0.00 0.00 0.00 5.73
594 595 2.038975 CTCTTCCTCCCACCCCGA 59.961 66.667 0.00 0.00 0.00 5.14
595 596 1.383248 CTCTTCCTCCCACCCCGAT 60.383 63.158 0.00 0.00 0.00 4.18
701 702 2.152016 CTCTATATCTCCCGTCGTGCA 58.848 52.381 0.00 0.00 0.00 4.57
851 852 2.031683 GGCATCGTTTCTTTCGGTATGG 59.968 50.000 0.00 0.00 0.00 2.74
868 869 6.488683 TCGGTATGGGATTTTGGTTATTCATC 59.511 38.462 0.00 0.00 0.00 2.92
1107 1108 3.374745 TCTGTTTCCGTCGTTACTTGAC 58.625 45.455 0.00 0.00 0.00 3.18
1177 1178 6.534475 TCGTAAACATTCCTAGGAGCTTTA 57.466 37.500 12.26 11.52 0.00 1.85
1432 1437 2.119495 GTCCTGGCCCATTCTCTTAGA 58.881 52.381 0.00 0.00 0.00 2.10
1433 1438 2.505819 GTCCTGGCCCATTCTCTTAGAA 59.494 50.000 0.00 0.00 38.78 2.10
1434 1439 2.774234 TCCTGGCCCATTCTCTTAGAAG 59.226 50.000 0.00 0.00 37.69 2.85
1437 1442 4.443598 CCTGGCCCATTCTCTTAGAAGTAC 60.444 50.000 0.00 0.00 37.69 2.73
1466 1478 1.202698 GGGGTATGGTGAGCTCATGTC 60.203 57.143 21.47 13.09 0.00 3.06
1555 1567 8.157476 ACAATTTGAGTAACCAAGTGATACTCT 58.843 33.333 17.56 3.90 43.71 3.24
1559 1571 5.105877 TGAGTAACCAAGTGATACTCTTCCG 60.106 44.000 17.56 0.00 43.71 4.30
1568 1580 2.362397 TGATACTCTTCCGACCATGAGC 59.638 50.000 0.00 0.00 0.00 4.26
1845 1857 8.986929 AGCTCCTAAATTTTAGCATAATGAGT 57.013 30.769 17.13 1.27 37.44 3.41
1857 1869 6.610741 AGCATAATGAGTTCCGAATTCTTC 57.389 37.500 3.52 0.00 0.00 2.87
2018 2030 3.244215 CCGGCAATCCTAGCTCTATTTCA 60.244 47.826 0.00 0.00 0.00 2.69
2145 2157 1.686355 AGCAACACGATTTTGTGGGA 58.314 45.000 3.13 0.00 44.21 4.37
2204 2254 4.453480 TTTCTTTGGAGTGGACCATCTT 57.547 40.909 0.00 0.00 39.82 2.40
2268 2318 5.288804 CCCACAAGTTGGTTACTGAATTTG 58.711 41.667 7.96 0.00 45.25 2.32
2392 2442 7.543520 GGGCATTGACTCTAAATTTCTTTCTTG 59.456 37.037 0.00 0.00 0.00 3.02
2438 2488 6.712095 TGTCTGCATTTGTTCTAACTGATCTT 59.288 34.615 0.00 0.00 0.00 2.40
2737 2787 5.240844 GCGCATTAAAGGTTGGTATATTCCT 59.759 40.000 0.30 0.00 0.00 3.36
2777 2827 8.365060 AGCATCTATAAATCATCTCTGCTACT 57.635 34.615 0.00 0.00 35.81 2.57
2955 3005 7.519649 GCCTCTTCATGCTACATAAAAGCTTAG 60.520 40.741 0.00 0.00 40.73 2.18
2956 3006 7.497249 CCTCTTCATGCTACATAAAAGCTTAGT 59.503 37.037 0.00 0.00 40.73 2.24
2957 3007 8.201554 TCTTCATGCTACATAAAAGCTTAGTG 57.798 34.615 0.00 1.53 40.73 2.74
2958 3008 8.040727 TCTTCATGCTACATAAAAGCTTAGTGA 58.959 33.333 0.00 0.00 40.73 3.41
2959 3009 8.560355 TTCATGCTACATAAAAGCTTAGTGAA 57.440 30.769 0.00 0.00 40.73 3.18
2960 3010 8.560355 TCATGCTACATAAAAGCTTAGTGAAA 57.440 30.769 0.00 0.00 40.73 2.69
2961 3011 8.668353 TCATGCTACATAAAAGCTTAGTGAAAG 58.332 33.333 0.00 4.37 40.73 2.62
3133 3278 4.469657 TCTTGGTTTGGTGTAAATGAGCT 58.530 39.130 0.00 0.00 0.00 4.09
3134 3279 4.278170 TCTTGGTTTGGTGTAAATGAGCTG 59.722 41.667 0.00 0.00 0.00 4.24
3806 3951 4.757799 TGTTGTATGTGTGTGGTTATGC 57.242 40.909 0.00 0.00 0.00 3.14
3808 3953 4.215185 TGTTGTATGTGTGTGGTTATGCTG 59.785 41.667 0.00 0.00 0.00 4.41
3809 3954 4.014569 TGTATGTGTGTGGTTATGCTGT 57.985 40.909 0.00 0.00 0.00 4.40
3810 3955 5.153950 TGTATGTGTGTGGTTATGCTGTA 57.846 39.130 0.00 0.00 0.00 2.74
3811 3956 5.175127 TGTATGTGTGTGGTTATGCTGTAG 58.825 41.667 0.00 0.00 0.00 2.74
3812 3957 3.052455 TGTGTGTGGTTATGCTGTAGG 57.948 47.619 0.00 0.00 0.00 3.18
3822 3967 7.931407 TGTGGTTATGCTGTAGGAGTATAAATG 59.069 37.037 0.00 0.00 39.94 2.32
3828 3973 8.888579 ATGCTGTAGGAGTATAAATGTGTAAC 57.111 34.615 0.00 0.00 37.35 2.50
3930 5262 5.090652 ACTTGTGTTGTATGTTTGTAGCG 57.909 39.130 0.00 0.00 0.00 4.26
3938 5270 5.018539 TGTATGTTTGTAGCGCCTCTAAT 57.981 39.130 2.29 0.00 0.00 1.73
3939 5271 4.808895 TGTATGTTTGTAGCGCCTCTAATG 59.191 41.667 2.29 0.00 0.00 1.90
3951 5283 3.057969 CCTCTAATGGCTGTTGTGTGA 57.942 47.619 0.00 0.00 0.00 3.58
3952 5284 3.411446 CCTCTAATGGCTGTTGTGTGAA 58.589 45.455 0.00 0.00 0.00 3.18
3953 5285 3.189287 CCTCTAATGGCTGTTGTGTGAAC 59.811 47.826 0.00 0.00 0.00 3.18
3983 7501 1.613270 CTGTTGAAATTTACCGCCGC 58.387 50.000 0.00 0.00 0.00 6.53
4001 7519 2.264480 CGAATCACCTCGCACCCA 59.736 61.111 0.00 0.00 31.04 4.51
4024 7542 4.230002 GCGCCGGCCACCTATGTA 62.230 66.667 23.46 0.00 0.00 2.29
4031 7549 0.254747 GGCCACCTATGTACTTGCCA 59.745 55.000 0.00 0.00 37.36 4.92
4088 7606 2.838225 CTCCCGCCCGACCTGTAT 60.838 66.667 0.00 0.00 0.00 2.29
4140 7658 1.609072 GAACCAAGTTGAAGCCCAGTC 59.391 52.381 3.87 0.00 0.00 3.51
4210 7728 6.461231 GGTGTATAGAGAGCTCATTTACCGTT 60.461 42.308 17.77 0.00 0.00 4.44
4211 7729 6.418226 GTGTATAGAGAGCTCATTTACCGTTG 59.582 42.308 17.77 0.00 0.00 4.10
4212 7730 3.963428 AGAGAGCTCATTTACCGTTGT 57.037 42.857 17.77 0.00 0.00 3.32
4213 7731 3.851098 AGAGAGCTCATTTACCGTTGTC 58.149 45.455 17.77 0.00 0.00 3.18
4214 7732 3.258372 AGAGAGCTCATTTACCGTTGTCA 59.742 43.478 17.77 0.00 0.00 3.58
4215 7733 4.081420 AGAGAGCTCATTTACCGTTGTCAT 60.081 41.667 17.77 0.00 0.00 3.06
4217 7735 5.730550 AGAGCTCATTTACCGTTGTCATAA 58.269 37.500 17.77 0.00 0.00 1.90
4219 7737 6.823689 AGAGCTCATTTACCGTTGTCATAATT 59.176 34.615 17.77 0.00 0.00 1.40
4220 7738 7.336931 AGAGCTCATTTACCGTTGTCATAATTT 59.663 33.333 17.77 0.00 0.00 1.82
4221 7739 7.472543 AGCTCATTTACCGTTGTCATAATTTC 58.527 34.615 0.00 0.00 0.00 2.17
4222 7740 7.120579 AGCTCATTTACCGTTGTCATAATTTCA 59.879 33.333 0.00 0.00 0.00 2.69
4223 7741 7.429340 GCTCATTTACCGTTGTCATAATTTCAG 59.571 37.037 0.00 0.00 0.00 3.02
4224 7742 8.554835 TCATTTACCGTTGTCATAATTTCAGA 57.445 30.769 0.00 0.00 0.00 3.27
4225 7743 8.664798 TCATTTACCGTTGTCATAATTTCAGAG 58.335 33.333 0.00 0.00 0.00 3.35
4226 7744 6.978343 TTACCGTTGTCATAATTTCAGAGG 57.022 37.500 0.00 0.00 0.00 3.69
4227 7745 4.906618 ACCGTTGTCATAATTTCAGAGGT 58.093 39.130 0.00 0.00 0.00 3.85
4228 7746 5.313712 ACCGTTGTCATAATTTCAGAGGTT 58.686 37.500 0.00 0.00 0.00 3.50
4229 7747 5.411669 ACCGTTGTCATAATTTCAGAGGTTC 59.588 40.000 0.00 0.00 0.00 3.62
4230 7748 5.643777 CCGTTGTCATAATTTCAGAGGTTCT 59.356 40.000 0.00 0.00 0.00 3.01
4231 7749 6.816640 CCGTTGTCATAATTTCAGAGGTTCTA 59.183 38.462 0.00 0.00 0.00 2.10
4232 7750 7.333423 CCGTTGTCATAATTTCAGAGGTTCTAA 59.667 37.037 0.00 0.00 0.00 2.10
4233 7751 8.717821 CGTTGTCATAATTTCAGAGGTTCTAAA 58.282 33.333 0.00 0.00 0.00 1.85
4271 7789 8.896744 TCTCAATAGTTTCAGCATAATCAAAGG 58.103 33.333 0.00 0.00 0.00 3.11
4272 7790 7.999679 TCAATAGTTTCAGCATAATCAAAGGG 58.000 34.615 0.00 0.00 0.00 3.95
4273 7791 6.966534 ATAGTTTCAGCATAATCAAAGGGG 57.033 37.500 0.00 0.00 0.00 4.79
4274 7792 4.677182 AGTTTCAGCATAATCAAAGGGGT 58.323 39.130 0.00 0.00 0.00 4.95
4275 7793 5.826643 AGTTTCAGCATAATCAAAGGGGTA 58.173 37.500 0.00 0.00 0.00 3.69
4276 7794 5.888161 AGTTTCAGCATAATCAAAGGGGTAG 59.112 40.000 0.00 0.00 0.00 3.18
4277 7795 5.450818 TTCAGCATAATCAAAGGGGTAGT 57.549 39.130 0.00 0.00 0.00 2.73
4278 7796 4.780815 TCAGCATAATCAAAGGGGTAGTG 58.219 43.478 0.00 0.00 0.00 2.74
4279 7797 4.473196 TCAGCATAATCAAAGGGGTAGTGA 59.527 41.667 0.00 0.00 0.00 3.41
4283 7801 5.239525 GCATAATCAAAGGGGTAGTGATCAC 59.760 44.000 18.47 18.47 30.76 3.06
4288 7806 2.537633 AGGGGTAGTGATCACGGTTA 57.462 50.000 19.85 4.74 36.20 2.85
4300 7818 5.577164 GTGATCACGGTTATATGATGCTACC 59.423 44.000 10.69 0.00 35.67 3.18
4315 7833 1.073923 GCTACCCCATGGTTAGGATGG 59.926 57.143 11.73 5.14 44.75 3.51
4367 7885 4.452795 TGGATTTGCAATGCTCACAAAATG 59.547 37.500 6.82 0.00 36.90 2.32
4368 7886 4.453136 GGATTTGCAATGCTCACAAAATGT 59.547 37.500 6.82 0.00 36.90 2.71
4371 7889 4.177165 TGCAATGCTCACAAAATGTAGG 57.823 40.909 6.82 0.00 0.00 3.18
4393 7911 9.120538 GTAGGGAATTCAAATATACTTTGAGCA 57.879 33.333 7.93 0.00 39.30 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.475135 GTCCTCCCTTGCCCTCGC 62.475 72.222 0.00 0.00 0.00 5.03
28 29 4.148825 CGTCCTCCCTTGCCCTCG 62.149 72.222 0.00 0.00 0.00 4.63
29 30 3.787001 CCGTCCTCCCTTGCCCTC 61.787 72.222 0.00 0.00 0.00 4.30
32 33 2.686106 TACCCGTCCTCCCTTGCC 60.686 66.667 0.00 0.00 0.00 4.52
33 34 2.901042 CTACCCGTCCTCCCTTGC 59.099 66.667 0.00 0.00 0.00 4.01
34 35 2.901042 GCTACCCGTCCTCCCTTG 59.099 66.667 0.00 0.00 0.00 3.61
35 36 2.758737 CGCTACCCGTCCTCCCTT 60.759 66.667 0.00 0.00 0.00 3.95
45 46 4.203076 ATGTCGCCGACGCTACCC 62.203 66.667 13.18 0.00 39.84 3.69
46 47 2.954868 CATGTCGCCGACGCTACC 60.955 66.667 13.18 0.00 39.84 3.18
47 48 1.804326 AACATGTCGCCGACGCTAC 60.804 57.895 13.18 0.00 39.84 3.58
48 49 1.803922 CAACATGTCGCCGACGCTA 60.804 57.895 13.18 0.00 39.84 4.26
49 50 3.112075 CAACATGTCGCCGACGCT 61.112 61.111 13.18 0.00 39.84 5.07
50 51 4.147322 CCAACATGTCGCCGACGC 62.147 66.667 13.18 0.00 39.84 5.19
51 52 2.431771 TCCAACATGTCGCCGACG 60.432 61.111 13.18 1.40 42.01 5.12
52 53 1.078759 CTCTCCAACATGTCGCCGAC 61.079 60.000 10.96 10.96 0.00 4.79
53 54 1.215382 CTCTCCAACATGTCGCCGA 59.785 57.895 0.00 0.00 0.00 5.54
54 55 0.803768 CTCTCTCCAACATGTCGCCG 60.804 60.000 0.00 0.00 0.00 6.46
55 56 0.532573 TCTCTCTCCAACATGTCGCC 59.467 55.000 0.00 0.00 0.00 5.54
56 57 1.919918 CTCTCTCTCCAACATGTCGC 58.080 55.000 0.00 0.00 0.00 5.19
57 58 1.476085 AGCTCTCTCTCCAACATGTCG 59.524 52.381 0.00 0.00 0.00 4.35
58 59 3.068024 CCTAGCTCTCTCTCCAACATGTC 59.932 52.174 0.00 0.00 0.00 3.06
59 60 3.030291 CCTAGCTCTCTCTCCAACATGT 58.970 50.000 0.00 0.00 0.00 3.21
60 61 2.364970 CCCTAGCTCTCTCTCCAACATG 59.635 54.545 0.00 0.00 0.00 3.21
61 62 2.023501 ACCCTAGCTCTCTCTCCAACAT 60.024 50.000 0.00 0.00 0.00 2.71
62 63 1.359474 ACCCTAGCTCTCTCTCCAACA 59.641 52.381 0.00 0.00 0.00 3.33
63 64 2.153034 ACCCTAGCTCTCTCTCCAAC 57.847 55.000 0.00 0.00 0.00 3.77
64 65 2.930109 AACCCTAGCTCTCTCTCCAA 57.070 50.000 0.00 0.00 0.00 3.53
65 66 2.175931 CCTAACCCTAGCTCTCTCTCCA 59.824 54.545 0.00 0.00 0.00 3.86
66 67 2.490168 CCCTAACCCTAGCTCTCTCTCC 60.490 59.091 0.00 0.00 0.00 3.71
67 68 2.444010 TCCCTAACCCTAGCTCTCTCTC 59.556 54.545 0.00 0.00 0.00 3.20
68 69 2.504905 TCCCTAACCCTAGCTCTCTCT 58.495 52.381 0.00 0.00 0.00 3.10
69 70 3.227614 CTTCCCTAACCCTAGCTCTCTC 58.772 54.545 0.00 0.00 0.00 3.20
70 71 2.090999 CCTTCCCTAACCCTAGCTCTCT 60.091 54.545 0.00 0.00 0.00 3.10
71 72 2.091222 TCCTTCCCTAACCCTAGCTCTC 60.091 54.545 0.00 0.00 0.00 3.20
72 73 1.938069 TCCTTCCCTAACCCTAGCTCT 59.062 52.381 0.00 0.00 0.00 4.09
73 74 2.091222 TCTCCTTCCCTAACCCTAGCTC 60.091 54.545 0.00 0.00 0.00 4.09
74 75 1.938069 TCTCCTTCCCTAACCCTAGCT 59.062 52.381 0.00 0.00 0.00 3.32
75 76 2.473576 TCTCCTTCCCTAACCCTAGC 57.526 55.000 0.00 0.00 0.00 3.42
76 77 5.339282 CCTTTTTCTCCTTCCCTAACCCTAG 60.339 48.000 0.00 0.00 0.00 3.02
77 78 4.538891 CCTTTTTCTCCTTCCCTAACCCTA 59.461 45.833 0.00 0.00 0.00 3.53
78 79 3.333980 CCTTTTTCTCCTTCCCTAACCCT 59.666 47.826 0.00 0.00 0.00 4.34
79 80 3.332783 TCCTTTTTCTCCTTCCCTAACCC 59.667 47.826 0.00 0.00 0.00 4.11
80 81 4.652679 TCCTTTTTCTCCTTCCCTAACC 57.347 45.455 0.00 0.00 0.00 2.85
81 82 5.010933 CCTTCCTTTTTCTCCTTCCCTAAC 58.989 45.833 0.00 0.00 0.00 2.34
82 83 4.044191 CCCTTCCTTTTTCTCCTTCCCTAA 59.956 45.833 0.00 0.00 0.00 2.69
83 84 3.591977 CCCTTCCTTTTTCTCCTTCCCTA 59.408 47.826 0.00 0.00 0.00 3.53
84 85 2.380249 CCCTTCCTTTTTCTCCTTCCCT 59.620 50.000 0.00 0.00 0.00 4.20
85 86 2.557676 CCCCTTCCTTTTTCTCCTTCCC 60.558 54.545 0.00 0.00 0.00 3.97
86 87 2.557676 CCCCCTTCCTTTTTCTCCTTCC 60.558 54.545 0.00 0.00 0.00 3.46
87 88 2.378886 TCCCCCTTCCTTTTTCTCCTTC 59.621 50.000 0.00 0.00 0.00 3.46
88 89 2.439265 TCCCCCTTCCTTTTTCTCCTT 58.561 47.619 0.00 0.00 0.00 3.36
89 90 2.149521 TCCCCCTTCCTTTTTCTCCT 57.850 50.000 0.00 0.00 0.00 3.69
90 91 2.110188 ACTTCCCCCTTCCTTTTTCTCC 59.890 50.000 0.00 0.00 0.00 3.71
91 92 3.157881 CACTTCCCCCTTCCTTTTTCTC 58.842 50.000 0.00 0.00 0.00 2.87
92 93 2.789399 TCACTTCCCCCTTCCTTTTTCT 59.211 45.455 0.00 0.00 0.00 2.52
93 94 3.157881 CTCACTTCCCCCTTCCTTTTTC 58.842 50.000 0.00 0.00 0.00 2.29
94 95 2.158310 CCTCACTTCCCCCTTCCTTTTT 60.158 50.000 0.00 0.00 0.00 1.94
95 96 1.429299 CCTCACTTCCCCCTTCCTTTT 59.571 52.381 0.00 0.00 0.00 2.27
96 97 1.076438 CCTCACTTCCCCCTTCCTTT 58.924 55.000 0.00 0.00 0.00 3.11
97 98 0.196118 TCCTCACTTCCCCCTTCCTT 59.804 55.000 0.00 0.00 0.00 3.36
98 99 0.252927 CTCCTCACTTCCCCCTTCCT 60.253 60.000 0.00 0.00 0.00 3.36
99 100 0.252742 TCTCCTCACTTCCCCCTTCC 60.253 60.000 0.00 0.00 0.00 3.46
100 101 1.199615 CTCTCCTCACTTCCCCCTTC 58.800 60.000 0.00 0.00 0.00 3.46
101 102 0.252927 CCTCTCCTCACTTCCCCCTT 60.253 60.000 0.00 0.00 0.00 3.95
102 103 1.156322 TCCTCTCCTCACTTCCCCCT 61.156 60.000 0.00 0.00 0.00 4.79
103 104 0.689412 CTCCTCTCCTCACTTCCCCC 60.689 65.000 0.00 0.00 0.00 5.40
104 105 0.689412 CCTCCTCTCCTCACTTCCCC 60.689 65.000 0.00 0.00 0.00 4.81
105 106 0.336737 TCCTCCTCTCCTCACTTCCC 59.663 60.000 0.00 0.00 0.00 3.97
106 107 1.286553 TCTCCTCCTCTCCTCACTTCC 59.713 57.143 0.00 0.00 0.00 3.46
107 108 2.654863 CTCTCCTCCTCTCCTCACTTC 58.345 57.143 0.00 0.00 0.00 3.01
108 109 1.287739 CCTCTCCTCCTCTCCTCACTT 59.712 57.143 0.00 0.00 0.00 3.16
109 110 0.926293 CCTCTCCTCCTCTCCTCACT 59.074 60.000 0.00 0.00 0.00 3.41
110 111 0.923358 TCCTCTCCTCCTCTCCTCAC 59.077 60.000 0.00 0.00 0.00 3.51
111 112 1.221635 CTCCTCTCCTCCTCTCCTCA 58.778 60.000 0.00 0.00 0.00 3.86
112 113 0.478507 CCTCCTCTCCTCCTCTCCTC 59.521 65.000 0.00 0.00 0.00 3.71
113 114 1.655114 GCCTCCTCTCCTCCTCTCCT 61.655 65.000 0.00 0.00 0.00 3.69
114 115 1.152546 GCCTCCTCTCCTCCTCTCC 60.153 68.421 0.00 0.00 0.00 3.71
115 116 1.152546 GGCCTCCTCTCCTCCTCTC 60.153 68.421 0.00 0.00 0.00 3.20
116 117 3.024217 GGCCTCCTCTCCTCCTCT 58.976 66.667 0.00 0.00 0.00 3.69
117 118 2.520741 CGGCCTCCTCTCCTCCTC 60.521 72.222 0.00 0.00 0.00 3.71
118 119 3.024356 TCGGCCTCCTCTCCTCCT 61.024 66.667 0.00 0.00 0.00 3.69
119 120 2.835895 GTCGGCCTCCTCTCCTCC 60.836 72.222 0.00 0.00 0.00 4.30
120 121 3.213402 CGTCGGCCTCCTCTCCTC 61.213 72.222 0.00 0.00 0.00 3.71
140 141 1.814394 GGGTTCCCGATTGGTTGTAAC 59.186 52.381 0.00 0.00 34.77 2.50
141 142 1.706305 AGGGTTCCCGATTGGTTGTAA 59.294 47.619 1.91 0.00 34.77 2.41
142 143 1.279846 GAGGGTTCCCGATTGGTTGTA 59.720 52.381 1.91 0.00 34.77 2.41
143 144 0.037734 GAGGGTTCCCGATTGGTTGT 59.962 55.000 1.91 0.00 34.77 3.32
144 145 0.679960 GGAGGGTTCCCGATTGGTTG 60.680 60.000 1.91 0.00 37.53 3.77
145 146 0.845102 AGGAGGGTTCCCGATTGGTT 60.845 55.000 1.91 0.00 45.24 3.67
146 147 1.229853 AGGAGGGTTCCCGATTGGT 60.230 57.895 1.91 0.00 45.24 3.67
147 148 1.271840 TGAGGAGGGTTCCCGATTGG 61.272 60.000 1.91 0.00 45.24 3.16
148 149 0.107654 GTGAGGAGGGTTCCCGATTG 60.108 60.000 1.91 0.00 45.24 2.67
149 150 1.272554 GGTGAGGAGGGTTCCCGATT 61.273 60.000 1.91 0.00 45.24 3.34
150 151 1.689582 GGTGAGGAGGGTTCCCGAT 60.690 63.158 1.91 0.00 45.24 4.18
151 152 2.284405 GGTGAGGAGGGTTCCCGA 60.284 66.667 1.91 0.00 45.24 5.14
152 153 3.400054 GGGTGAGGAGGGTTCCCG 61.400 72.222 1.91 0.00 45.24 5.14
153 154 0.327191 TATGGGTGAGGAGGGTTCCC 60.327 60.000 0.00 0.00 45.24 3.97
154 155 0.837940 GTATGGGTGAGGAGGGTTCC 59.162 60.000 0.00 0.00 44.39 3.62
155 156 0.464452 CGTATGGGTGAGGAGGGTTC 59.536 60.000 0.00 0.00 0.00 3.62
156 157 0.252558 ACGTATGGGTGAGGAGGGTT 60.253 55.000 0.00 0.00 0.00 4.11
157 158 0.976073 CACGTATGGGTGAGGAGGGT 60.976 60.000 0.00 0.00 40.38 4.34
158 159 0.686441 TCACGTATGGGTGAGGAGGG 60.686 60.000 0.00 0.00 41.76 4.30
159 160 1.191535 TTCACGTATGGGTGAGGAGG 58.808 55.000 0.00 0.00 46.68 4.30
160 161 2.618053 GTTTCACGTATGGGTGAGGAG 58.382 52.381 0.00 0.00 46.68 3.69
161 162 1.276989 GGTTTCACGTATGGGTGAGGA 59.723 52.381 0.00 0.00 46.68 3.71
162 163 1.677820 GGGTTTCACGTATGGGTGAGG 60.678 57.143 0.00 0.00 46.68 3.86
163 164 1.002659 TGGGTTTCACGTATGGGTGAG 59.997 52.381 0.00 0.00 46.68 3.51
164 165 1.002659 CTGGGTTTCACGTATGGGTGA 59.997 52.381 0.00 0.00 44.74 4.02
165 166 1.448985 CTGGGTTTCACGTATGGGTG 58.551 55.000 0.00 0.00 39.29 4.61
166 167 0.322187 GCTGGGTTTCACGTATGGGT 60.322 55.000 0.00 0.00 0.00 4.51
167 168 1.029947 GGCTGGGTTTCACGTATGGG 61.030 60.000 0.00 0.00 0.00 4.00
168 169 0.322098 TGGCTGGGTTTCACGTATGG 60.322 55.000 0.00 0.00 0.00 2.74
169 170 1.670811 GATGGCTGGGTTTCACGTATG 59.329 52.381 0.00 0.00 0.00 2.39
170 171 1.408266 GGATGGCTGGGTTTCACGTAT 60.408 52.381 0.00 0.00 0.00 3.06
171 172 0.035820 GGATGGCTGGGTTTCACGTA 60.036 55.000 0.00 0.00 0.00 3.57
172 173 1.303317 GGATGGCTGGGTTTCACGT 60.303 57.895 0.00 0.00 0.00 4.49
173 174 1.303236 TGGATGGCTGGGTTTCACG 60.303 57.895 0.00 0.00 0.00 4.35
174 175 0.539438 TGTGGATGGCTGGGTTTCAC 60.539 55.000 0.00 0.00 0.00 3.18
175 176 0.539438 GTGTGGATGGCTGGGTTTCA 60.539 55.000 0.00 0.00 0.00 2.69
176 177 1.250840 GGTGTGGATGGCTGGGTTTC 61.251 60.000 0.00 0.00 0.00 2.78
177 178 1.228862 GGTGTGGATGGCTGGGTTT 60.229 57.895 0.00 0.00 0.00 3.27
178 179 2.430704 CTGGTGTGGATGGCTGGGTT 62.431 60.000 0.00 0.00 0.00 4.11
179 180 2.858476 TGGTGTGGATGGCTGGGT 60.858 61.111 0.00 0.00 0.00 4.51
180 181 2.044650 CTGGTGTGGATGGCTGGG 60.045 66.667 0.00 0.00 0.00 4.45
181 182 2.753043 GCTGGTGTGGATGGCTGG 60.753 66.667 0.00 0.00 0.00 4.85
182 183 2.753043 GGCTGGTGTGGATGGCTG 60.753 66.667 0.00 0.00 0.00 4.85
183 184 3.259314 TGGCTGGTGTGGATGGCT 61.259 61.111 0.00 0.00 0.00 4.75
184 185 3.064324 GTGGCTGGTGTGGATGGC 61.064 66.667 0.00 0.00 0.00 4.40
185 186 1.973281 GTGTGGCTGGTGTGGATGG 60.973 63.158 0.00 0.00 0.00 3.51
186 187 1.228215 TGTGTGGCTGGTGTGGATG 60.228 57.895 0.00 0.00 0.00 3.51
187 188 1.228245 GTGTGTGGCTGGTGTGGAT 60.228 57.895 0.00 0.00 0.00 3.41
188 189 2.191908 GTGTGTGGCTGGTGTGGA 59.808 61.111 0.00 0.00 0.00 4.02
189 190 2.124362 TGTGTGTGGCTGGTGTGG 60.124 61.111 0.00 0.00 0.00 4.17
190 191 1.748500 TGTGTGTGTGGCTGGTGTG 60.749 57.895 0.00 0.00 0.00 3.82
191 192 1.748879 GTGTGTGTGTGGCTGGTGT 60.749 57.895 0.00 0.00 0.00 4.16
192 193 1.748500 TGTGTGTGTGTGGCTGGTG 60.749 57.895 0.00 0.00 0.00 4.17
193 194 1.748879 GTGTGTGTGTGTGGCTGGT 60.749 57.895 0.00 0.00 0.00 4.00
194 195 2.822758 CGTGTGTGTGTGTGGCTGG 61.823 63.158 0.00 0.00 0.00 4.85
195 196 2.106074 ACGTGTGTGTGTGTGGCTG 61.106 57.895 0.00 0.00 0.00 4.85
196 197 2.106074 CACGTGTGTGTGTGTGGCT 61.106 57.895 7.58 0.00 41.34 4.75
197 198 1.640210 TTCACGTGTGTGTGTGTGGC 61.640 55.000 16.51 0.00 46.49 5.01
198 199 0.799393 TTTCACGTGTGTGTGTGTGG 59.201 50.000 16.51 0.00 46.49 4.17
199 200 2.823196 ATTTCACGTGTGTGTGTGTG 57.177 45.000 16.51 0.00 46.49 3.82
200 201 2.096819 GGAATTTCACGTGTGTGTGTGT 59.903 45.455 16.51 0.00 46.49 3.72
201 202 2.096657 TGGAATTTCACGTGTGTGTGTG 59.903 45.455 16.51 0.00 46.49 3.82
202 203 2.096819 GTGGAATTTCACGTGTGTGTGT 59.903 45.455 16.51 0.00 46.49 3.72
203 204 2.540769 GGTGGAATTTCACGTGTGTGTG 60.541 50.000 16.51 0.00 46.49 3.82
204 205 1.673920 GGTGGAATTTCACGTGTGTGT 59.326 47.619 16.51 0.00 46.49 3.72
206 207 1.133915 AGGGTGGAATTTCACGTGTGT 60.134 47.619 16.51 0.00 38.46 3.72
207 208 1.604604 AGGGTGGAATTTCACGTGTG 58.395 50.000 16.51 0.00 38.46 3.82
208 209 1.953686 CAAGGGTGGAATTTCACGTGT 59.046 47.619 16.51 0.00 38.46 4.49
209 210 1.335872 GCAAGGGTGGAATTTCACGTG 60.336 52.381 9.94 9.94 38.46 4.49
210 211 0.958822 GCAAGGGTGGAATTTCACGT 59.041 50.000 10.80 0.00 38.46 4.49
211 212 0.243636 GGCAAGGGTGGAATTTCACG 59.756 55.000 10.80 0.00 38.46 4.35
212 213 0.608130 GGGCAAGGGTGGAATTTCAC 59.392 55.000 8.50 8.50 36.95 3.18
213 214 0.486879 AGGGCAAGGGTGGAATTTCA 59.513 50.000 0.00 0.00 0.00 2.69
214 215 1.186200 GAGGGCAAGGGTGGAATTTC 58.814 55.000 0.00 0.00 0.00 2.17
215 216 0.786435 AGAGGGCAAGGGTGGAATTT 59.214 50.000 0.00 0.00 0.00 1.82
216 217 0.040204 CAGAGGGCAAGGGTGGAATT 59.960 55.000 0.00 0.00 0.00 2.17
217 218 1.693640 CAGAGGGCAAGGGTGGAAT 59.306 57.895 0.00 0.00 0.00 3.01
218 219 3.170362 CAGAGGGCAAGGGTGGAA 58.830 61.111 0.00 0.00 0.00 3.53
219 220 3.650950 GCAGAGGGCAAGGGTGGA 61.651 66.667 0.00 0.00 43.97 4.02
221 222 4.020617 TCGCAGAGGGCAAGGGTG 62.021 66.667 0.00 0.00 45.17 4.61
232 233 3.679980 GTGTAATTTTCAGAGCTCGCAGA 59.320 43.478 8.37 5.25 0.00 4.26
233 234 3.482598 CGTGTAATTTTCAGAGCTCGCAG 60.483 47.826 8.37 2.66 0.00 5.18
234 235 2.411748 CGTGTAATTTTCAGAGCTCGCA 59.588 45.455 8.37 0.00 0.00 5.10
235 236 2.784665 GCGTGTAATTTTCAGAGCTCGC 60.785 50.000 8.37 0.00 0.00 5.03
236 237 2.532973 CGCGTGTAATTTTCAGAGCTCG 60.533 50.000 8.37 3.55 0.00 5.03
237 238 2.222819 CCGCGTGTAATTTTCAGAGCTC 60.223 50.000 5.27 5.27 0.00 4.09
238 239 1.732259 CCGCGTGTAATTTTCAGAGCT 59.268 47.619 4.92 0.00 0.00 4.09
239 240 1.463444 ACCGCGTGTAATTTTCAGAGC 59.537 47.619 4.92 0.00 0.00 4.09
240 241 2.159707 CCACCGCGTGTAATTTTCAGAG 60.160 50.000 4.92 0.00 0.00 3.35
241 242 1.801771 CCACCGCGTGTAATTTTCAGA 59.198 47.619 4.92 0.00 0.00 3.27
242 243 1.727857 GCCACCGCGTGTAATTTTCAG 60.728 52.381 4.92 0.00 0.00 3.02
243 244 0.238817 GCCACCGCGTGTAATTTTCA 59.761 50.000 4.92 0.00 0.00 2.69
244 245 0.238817 TGCCACCGCGTGTAATTTTC 59.761 50.000 4.92 0.00 38.08 2.29
245 246 0.239879 CTGCCACCGCGTGTAATTTT 59.760 50.000 4.92 0.00 38.08 1.82
246 247 1.873165 CTGCCACCGCGTGTAATTT 59.127 52.632 4.92 0.00 38.08 1.82
247 248 2.686816 GCTGCCACCGCGTGTAATT 61.687 57.895 4.92 0.00 38.08 1.40
248 249 3.124921 GCTGCCACCGCGTGTAAT 61.125 61.111 4.92 0.00 38.08 1.89
249 250 4.308458 AGCTGCCACCGCGTGTAA 62.308 61.111 4.92 0.00 38.08 2.41
250 251 4.735132 GAGCTGCCACCGCGTGTA 62.735 66.667 4.92 0.00 38.08 2.90
257 258 3.665675 ATCGAACCGAGCTGCCACC 62.666 63.158 0.00 0.00 39.91 4.61
258 259 2.125512 ATCGAACCGAGCTGCCAC 60.126 61.111 0.00 0.00 39.91 5.01
259 260 2.184322 GATCGAACCGAGCTGCCA 59.816 61.111 0.00 0.00 39.28 4.92
260 261 2.586357 GGATCGAACCGAGCTGCC 60.586 66.667 0.00 0.00 42.17 4.85
268 269 3.366739 AAGGCCGTCGGATCGAACC 62.367 63.158 17.49 5.24 37.72 3.62
269 270 2.165301 CAAGGCCGTCGGATCGAAC 61.165 63.158 17.49 0.00 37.72 3.95
270 271 2.183300 CAAGGCCGTCGGATCGAA 59.817 61.111 17.49 0.00 37.72 3.71
271 272 3.833645 CCAAGGCCGTCGGATCGA 61.834 66.667 17.49 0.00 0.00 3.59
272 273 4.143333 ACCAAGGCCGTCGGATCG 62.143 66.667 17.49 0.00 0.00 3.69
273 274 2.202892 GACCAAGGCCGTCGGATC 60.203 66.667 17.49 6.18 0.00 3.36
274 275 3.000819 TGACCAAGGCCGTCGGAT 61.001 61.111 17.49 0.00 32.68 4.18
275 276 3.998672 GTGACCAAGGCCGTCGGA 61.999 66.667 17.49 0.00 32.68 4.55
276 277 3.934391 GAGTGACCAAGGCCGTCGG 62.934 68.421 6.99 6.99 32.68 4.79
277 278 2.432628 GAGTGACCAAGGCCGTCG 60.433 66.667 0.00 0.00 32.68 5.12
278 279 2.047179 GGAGTGACCAAGGCCGTC 60.047 66.667 0.00 0.00 38.79 4.79
279 280 2.847234 TGGAGTGACCAAGGCCGT 60.847 61.111 0.00 0.00 46.75 5.68
287 288 0.383949 GATCTCGCTCTGGAGTGACC 59.616 60.000 9.45 0.35 42.43 4.02
288 289 0.383949 GGATCTCGCTCTGGAGTGAC 59.616 60.000 9.45 1.72 42.43 3.67
289 290 1.098129 CGGATCTCGCTCTGGAGTGA 61.098 60.000 12.41 12.41 44.79 3.41
290 291 1.098129 TCGGATCTCGCTCTGGAGTG 61.098 60.000 4.93 4.93 40.15 3.51
291 292 1.098712 GTCGGATCTCGCTCTGGAGT 61.099 60.000 0.00 0.00 39.05 3.85
292 293 1.652012 GTCGGATCTCGCTCTGGAG 59.348 63.158 0.00 0.00 39.05 3.86
293 294 2.180862 CGTCGGATCTCGCTCTGGA 61.181 63.158 0.00 0.00 39.05 3.86
294 295 2.180862 TCGTCGGATCTCGCTCTGG 61.181 63.158 0.00 0.00 39.05 3.86
295 296 1.010574 GTCGTCGGATCTCGCTCTG 60.011 63.158 0.00 0.00 39.05 3.35
296 297 2.181521 GGTCGTCGGATCTCGCTCT 61.182 63.158 0.00 0.00 39.05 4.09
297 298 2.181521 AGGTCGTCGGATCTCGCTC 61.182 63.158 0.00 0.00 39.05 5.03
298 299 2.124653 AGGTCGTCGGATCTCGCT 60.125 61.111 0.00 0.00 39.05 4.93
299 300 2.024871 CAGGTCGTCGGATCTCGC 59.975 66.667 0.00 0.00 39.05 5.03
300 301 1.167155 ATCCAGGTCGTCGGATCTCG 61.167 60.000 0.00 0.00 37.46 4.04
301 302 1.033574 AATCCAGGTCGTCGGATCTC 58.966 55.000 0.00 0.00 41.28 2.75
302 303 1.137086 CAAATCCAGGTCGTCGGATCT 59.863 52.381 0.00 0.00 41.28 2.75
303 304 1.134788 ACAAATCCAGGTCGTCGGATC 60.135 52.381 0.00 0.00 41.28 3.36
304 305 0.902531 ACAAATCCAGGTCGTCGGAT 59.097 50.000 0.00 0.00 44.09 4.18
305 306 0.682852 AACAAATCCAGGTCGTCGGA 59.317 50.000 0.00 0.00 35.27 4.55
306 307 1.076332 GAACAAATCCAGGTCGTCGG 58.924 55.000 0.00 0.00 0.00 4.79
307 308 1.790755 TGAACAAATCCAGGTCGTCG 58.209 50.000 0.00 0.00 0.00 5.12
308 309 3.372206 CAGATGAACAAATCCAGGTCGTC 59.628 47.826 0.00 0.00 0.00 4.20
309 310 3.338249 CAGATGAACAAATCCAGGTCGT 58.662 45.455 0.00 0.00 0.00 4.34
310 311 2.679837 CCAGATGAACAAATCCAGGTCG 59.320 50.000 0.00 0.00 0.00 4.79
311 312 3.944015 CTCCAGATGAACAAATCCAGGTC 59.056 47.826 0.00 0.00 0.00 3.85
312 313 3.588842 TCTCCAGATGAACAAATCCAGGT 59.411 43.478 0.00 0.00 0.00 4.00
313 314 4.226427 TCTCCAGATGAACAAATCCAGG 57.774 45.455 0.00 0.00 0.00 4.45
314 315 4.820716 GGATCTCCAGATGAACAAATCCAG 59.179 45.833 0.00 0.00 34.37 3.86
315 316 4.684214 CGGATCTCCAGATGAACAAATCCA 60.684 45.833 0.00 0.00 34.37 3.41
316 317 3.812053 CGGATCTCCAGATGAACAAATCC 59.188 47.826 0.00 0.00 34.37 3.01
317 318 4.509600 GTCGGATCTCCAGATGAACAAATC 59.490 45.833 0.00 0.00 34.37 2.17
318 319 4.446371 GTCGGATCTCCAGATGAACAAAT 58.554 43.478 0.00 0.00 34.37 2.32
319 320 3.676049 CGTCGGATCTCCAGATGAACAAA 60.676 47.826 0.00 0.00 34.37 2.83
320 321 2.159240 CGTCGGATCTCCAGATGAACAA 60.159 50.000 0.00 0.00 34.37 2.83
321 322 1.405463 CGTCGGATCTCCAGATGAACA 59.595 52.381 0.00 0.00 34.37 3.18
322 323 1.269309 CCGTCGGATCTCCAGATGAAC 60.269 57.143 4.91 0.00 34.37 3.18
323 324 1.032794 CCGTCGGATCTCCAGATGAA 58.967 55.000 4.91 0.00 34.37 2.57
324 325 0.182775 TCCGTCGGATCTCCAGATGA 59.817 55.000 10.71 0.00 34.37 2.92
325 326 0.595588 CTCCGTCGGATCTCCAGATG 59.404 60.000 15.81 0.00 34.37 2.90
326 327 0.474614 TCTCCGTCGGATCTCCAGAT 59.525 55.000 15.81 0.00 37.51 2.90
327 328 0.179043 CTCTCCGTCGGATCTCCAGA 60.179 60.000 15.81 6.45 35.14 3.86
328 329 1.169661 CCTCTCCGTCGGATCTCCAG 61.170 65.000 15.81 1.63 35.14 3.86
329 330 1.152943 CCTCTCCGTCGGATCTCCA 60.153 63.158 15.81 0.00 35.14 3.86
330 331 0.250989 ATCCTCTCCGTCGGATCTCC 60.251 60.000 15.81 0.00 35.08 3.71
331 332 1.611519 AATCCTCTCCGTCGGATCTC 58.388 55.000 15.81 0.00 39.05 2.75
332 333 1.683917 CAAATCCTCTCCGTCGGATCT 59.316 52.381 15.81 0.00 39.05 2.75
333 334 1.409427 ACAAATCCTCTCCGTCGGATC 59.591 52.381 15.81 0.00 39.05 3.36
334 335 1.486211 ACAAATCCTCTCCGTCGGAT 58.514 50.000 15.81 0.00 41.68 4.18
335 336 1.203994 GAACAAATCCTCTCCGTCGGA 59.796 52.381 14.54 14.54 0.00 4.55
336 337 1.641577 GAACAAATCCTCTCCGTCGG 58.358 55.000 4.39 4.39 0.00 4.79
337 338 1.269166 CGAACAAATCCTCTCCGTCG 58.731 55.000 0.00 0.00 0.00 5.12
338 339 1.641577 CCGAACAAATCCTCTCCGTC 58.358 55.000 0.00 0.00 0.00 4.79
339 340 0.249398 CCCGAACAAATCCTCTCCGT 59.751 55.000 0.00 0.00 0.00 4.69
340 341 0.535335 TCCCGAACAAATCCTCTCCG 59.465 55.000 0.00 0.00 0.00 4.63
341 342 1.744114 GCTCCCGAACAAATCCTCTCC 60.744 57.143 0.00 0.00 0.00 3.71
342 343 1.657822 GCTCCCGAACAAATCCTCTC 58.342 55.000 0.00 0.00 0.00 3.20
343 344 0.108138 CGCTCCCGAACAAATCCTCT 60.108 55.000 0.00 0.00 36.29 3.69
344 345 0.108329 TCGCTCCCGAACAAATCCTC 60.108 55.000 0.00 0.00 41.17 3.71
345 346 0.108138 CTCGCTCCCGAACAAATCCT 60.108 55.000 0.00 0.00 43.87 3.24
346 347 0.108329 TCTCGCTCCCGAACAAATCC 60.108 55.000 0.00 0.00 43.87 3.01
347 348 1.861575 GATCTCGCTCCCGAACAAATC 59.138 52.381 0.00 0.00 43.87 2.17
348 349 1.473434 GGATCTCGCTCCCGAACAAAT 60.473 52.381 0.00 0.00 43.87 2.32
349 350 0.108329 GGATCTCGCTCCCGAACAAA 60.108 55.000 0.00 0.00 43.87 2.83
350 351 1.515954 GGATCTCGCTCCCGAACAA 59.484 57.895 0.00 0.00 43.87 2.83
351 352 2.771639 CGGATCTCGCTCCCGAACA 61.772 63.158 0.00 0.00 45.58 3.18
352 353 2.026301 CGGATCTCGCTCCCGAAC 59.974 66.667 0.00 0.00 45.58 3.95
355 356 4.315122 CGTCGGATCTCGCTCCCG 62.315 72.222 0.00 0.00 44.22 5.14
356 357 3.967335 CCGTCGGATCTCGCTCCC 61.967 72.222 4.91 0.00 39.05 4.30
357 358 3.183776 GACCGTCGGATCTCGCTCC 62.184 68.421 20.51 0.00 39.05 4.70
358 359 1.989966 TTGACCGTCGGATCTCGCTC 61.990 60.000 20.51 3.33 39.05 5.03
359 360 1.994507 CTTGACCGTCGGATCTCGCT 61.995 60.000 20.51 0.00 39.05 4.93
360 361 1.586564 CTTGACCGTCGGATCTCGC 60.587 63.158 20.51 0.41 39.05 5.03
361 362 0.450583 TTCTTGACCGTCGGATCTCG 59.549 55.000 20.51 7.30 40.90 4.04
362 363 2.544069 GGATTCTTGACCGTCGGATCTC 60.544 54.545 20.51 5.79 0.00 2.75
363 364 1.409427 GGATTCTTGACCGTCGGATCT 59.591 52.381 20.51 0.00 0.00 2.75
364 365 1.136305 TGGATTCTTGACCGTCGGATC 59.864 52.381 20.51 12.26 0.00 3.36
365 366 1.191535 TGGATTCTTGACCGTCGGAT 58.808 50.000 20.51 1.57 0.00 4.18
366 367 0.970640 TTGGATTCTTGACCGTCGGA 59.029 50.000 20.51 0.00 0.00 4.55
367 368 1.463444 GTTTGGATTCTTGACCGTCGG 59.537 52.381 10.48 10.48 0.00 4.79
368 369 1.126113 CGTTTGGATTCTTGACCGTCG 59.874 52.381 0.00 0.00 0.00 5.12
369 370 1.136057 GCGTTTGGATTCTTGACCGTC 60.136 52.381 0.00 0.00 0.00 4.79
370 371 0.872388 GCGTTTGGATTCTTGACCGT 59.128 50.000 0.00 0.00 0.00 4.83
371 372 0.168128 GGCGTTTGGATTCTTGACCG 59.832 55.000 0.00 0.00 0.00 4.79
372 373 1.200020 CAGGCGTTTGGATTCTTGACC 59.800 52.381 0.00 0.00 0.00 4.02
373 374 2.151202 TCAGGCGTTTGGATTCTTGAC 58.849 47.619 0.00 0.00 0.00 3.18
374 375 2.559698 TCAGGCGTTTGGATTCTTGA 57.440 45.000 0.00 0.00 0.00 3.02
375 376 2.749076 TCATCAGGCGTTTGGATTCTTG 59.251 45.455 0.00 0.00 0.00 3.02
376 377 3.012518 CTCATCAGGCGTTTGGATTCTT 58.987 45.455 0.00 0.00 0.00 2.52
377 378 2.636830 CTCATCAGGCGTTTGGATTCT 58.363 47.619 0.00 0.00 0.00 2.40
378 379 1.672881 CCTCATCAGGCGTTTGGATTC 59.327 52.381 0.00 0.00 30.98 2.52
379 380 1.755179 CCTCATCAGGCGTTTGGATT 58.245 50.000 0.00 0.00 30.98 3.01
380 381 3.483954 CCTCATCAGGCGTTTGGAT 57.516 52.632 0.00 0.00 30.98 3.41
389 390 5.296283 CAGAGTAAAATGAAGCCTCATCAGG 59.704 44.000 0.00 0.00 41.66 3.86
390 391 5.296283 CCAGAGTAAAATGAAGCCTCATCAG 59.704 44.000 0.00 0.00 41.66 2.90
391 392 5.045651 TCCAGAGTAAAATGAAGCCTCATCA 60.046 40.000 0.00 0.00 41.66 3.07
392 393 5.295540 GTCCAGAGTAAAATGAAGCCTCATC 59.704 44.000 0.00 0.00 41.66 2.92
393 394 5.045286 AGTCCAGAGTAAAATGAAGCCTCAT 60.045 40.000 0.00 0.00 44.54 2.90
394 395 4.287067 AGTCCAGAGTAAAATGAAGCCTCA 59.713 41.667 0.00 0.00 35.56 3.86
395 396 4.837972 AGTCCAGAGTAAAATGAAGCCTC 58.162 43.478 0.00 0.00 0.00 4.70
396 397 4.534103 AGAGTCCAGAGTAAAATGAAGCCT 59.466 41.667 0.00 0.00 0.00 4.58
397 398 4.837972 AGAGTCCAGAGTAAAATGAAGCC 58.162 43.478 0.00 0.00 0.00 4.35
398 399 9.601217 TTATTAGAGTCCAGAGTAAAATGAAGC 57.399 33.333 0.00 0.00 0.00 3.86
406 407 9.434275 TCATTCCATTATTAGAGTCCAGAGTAA 57.566 33.333 0.00 0.00 0.00 2.24
407 408 9.607333 ATCATTCCATTATTAGAGTCCAGAGTA 57.393 33.333 0.00 0.00 0.00 2.59
408 409 7.921041 TCATTCCATTATTAGAGTCCAGAGT 57.079 36.000 0.00 0.00 0.00 3.24
409 410 9.868277 GTATCATTCCATTATTAGAGTCCAGAG 57.132 37.037 0.00 0.00 0.00 3.35
410 411 8.816894 GGTATCATTCCATTATTAGAGTCCAGA 58.183 37.037 0.00 0.00 0.00 3.86
411 412 8.043710 GGGTATCATTCCATTATTAGAGTCCAG 58.956 40.741 0.00 0.00 0.00 3.86
412 413 7.515861 TGGGTATCATTCCATTATTAGAGTCCA 59.484 37.037 0.00 0.00 0.00 4.02
413 414 7.918076 TGGGTATCATTCCATTATTAGAGTCC 58.082 38.462 0.00 0.00 0.00 3.85
414 415 9.965902 ATTGGGTATCATTCCATTATTAGAGTC 57.034 33.333 0.00 0.00 32.48 3.36
415 416 9.965902 GATTGGGTATCATTCCATTATTAGAGT 57.034 33.333 0.00 0.00 33.21 3.24
420 421 8.370182 GCAAAGATTGGGTATCATTCCATTATT 58.630 33.333 0.00 0.00 35.59 1.40
421 422 7.309377 CGCAAAGATTGGGTATCATTCCATTAT 60.309 37.037 0.00 0.00 38.64 1.28
422 423 6.016360 CGCAAAGATTGGGTATCATTCCATTA 60.016 38.462 0.00 0.00 38.64 1.90
423 424 5.221303 CGCAAAGATTGGGTATCATTCCATT 60.221 40.000 0.00 0.00 38.64 3.16
424 425 4.279169 CGCAAAGATTGGGTATCATTCCAT 59.721 41.667 0.00 0.00 38.64 3.41
425 426 3.631686 CGCAAAGATTGGGTATCATTCCA 59.368 43.478 0.00 0.00 38.64 3.53
426 427 4.228912 CGCAAAGATTGGGTATCATTCC 57.771 45.455 0.00 0.00 38.64 3.01
460 461 4.830600 ACGTTGGGGATATTCACTGTTTTT 59.169 37.500 0.00 0.00 0.00 1.94
461 462 4.403734 ACGTTGGGGATATTCACTGTTTT 58.596 39.130 0.00 0.00 0.00 2.43
462 463 4.007659 GACGTTGGGGATATTCACTGTTT 58.992 43.478 0.00 0.00 0.00 2.83
463 464 3.263425 AGACGTTGGGGATATTCACTGTT 59.737 43.478 0.00 0.00 0.00 3.16
469 470 3.493873 GGTGGTAGACGTTGGGGATATTC 60.494 52.174 0.00 0.00 0.00 1.75
592 593 2.288518 GGAAAGAGGAAGGGATCGATCG 60.289 54.545 18.81 9.36 0.00 3.69
593 594 2.037902 GGGAAAGAGGAAGGGATCGATC 59.962 54.545 17.36 17.36 0.00 3.69
594 595 2.050918 GGGAAAGAGGAAGGGATCGAT 58.949 52.381 0.00 0.00 0.00 3.59
595 596 1.497161 GGGAAAGAGGAAGGGATCGA 58.503 55.000 0.00 0.00 0.00 3.59
1107 1108 5.005971 CAGTGAATTTCAACAAAGTTGGCAG 59.994 40.000 9.72 0.00 0.00 4.85
1177 1178 7.503566 TGAATCCAAAGAAAGAATCAGACTGTT 59.496 33.333 1.59 0.00 0.00 3.16
1312 1313 4.220693 ACAGATCATCAAACGGATTCCA 57.779 40.909 3.09 0.00 32.57 3.53
1432 1437 4.232091 CCATACCCCCTCACTATGTACTT 58.768 47.826 0.00 0.00 0.00 2.24
1433 1438 3.209152 ACCATACCCCCTCACTATGTACT 59.791 47.826 0.00 0.00 0.00 2.73
1434 1439 3.323979 CACCATACCCCCTCACTATGTAC 59.676 52.174 0.00 0.00 0.00 2.90
1437 1442 2.634940 CTCACCATACCCCCTCACTATG 59.365 54.545 0.00 0.00 0.00 2.23
1466 1478 3.512680 GGAACCAAGTATCACTCTCACG 58.487 50.000 0.00 0.00 0.00 4.35
1555 1567 5.714806 TGATATATAGTGCTCATGGTCGGAA 59.285 40.000 0.00 0.00 0.00 4.30
1559 1571 7.038659 GGAAGTGATATATAGTGCTCATGGTC 58.961 42.308 0.00 0.00 0.00 4.02
1857 1869 8.903570 TCCAAACAATACATAGCAATTTAACG 57.096 30.769 0.00 0.00 0.00 3.18
2304 2354 3.433598 CGACCAAACCCAGATCATACCAT 60.434 47.826 0.00 0.00 0.00 3.55
2392 2442 9.552114 CAGACAGTCAAACATAAAGAATGAATC 57.448 33.333 2.66 0.00 39.07 2.52
2438 2488 2.820178 TCAGAAGACAGATGGGTAGCA 58.180 47.619 0.00 0.00 0.00 3.49
2737 2787 4.630644 AGATGCTCTCAAGGAAGAAACA 57.369 40.909 0.00 0.00 0.00 2.83
2777 2827 8.458573 AAACAAGTACTGAAATGGTTATCACA 57.541 30.769 0.00 0.00 0.00 3.58
2955 3005 3.431572 CAGCTCACACTCTAAGCTTTCAC 59.568 47.826 3.20 0.00 43.67 3.18
2956 3006 3.321968 TCAGCTCACACTCTAAGCTTTCA 59.678 43.478 3.20 0.00 43.67 2.69
2957 3007 3.919216 TCAGCTCACACTCTAAGCTTTC 58.081 45.455 3.20 0.00 43.67 2.62
2958 3008 3.323403 ACTCAGCTCACACTCTAAGCTTT 59.677 43.478 3.20 0.00 43.67 3.51
2959 3009 2.896685 ACTCAGCTCACACTCTAAGCTT 59.103 45.455 3.48 3.48 43.67 3.74
2960 3010 2.491693 GACTCAGCTCACACTCTAAGCT 59.508 50.000 0.00 0.00 46.98 3.74
2961 3011 2.491693 AGACTCAGCTCACACTCTAAGC 59.508 50.000 0.00 0.00 36.27 3.09
2962 3012 4.022416 ACAAGACTCAGCTCACACTCTAAG 60.022 45.833 0.00 0.00 0.00 2.18
2963 3013 3.891977 ACAAGACTCAGCTCACACTCTAA 59.108 43.478 0.00 0.00 0.00 2.10
2964 3014 3.254411 CACAAGACTCAGCTCACACTCTA 59.746 47.826 0.00 0.00 0.00 2.43
3133 3278 9.654663 TTGAATCATGTCAAATTCATTTATGCA 57.345 25.926 12.34 0.00 40.53 3.96
3320 3465 2.884012 CACAAACACCACTGATAGGCAA 59.116 45.455 0.00 0.00 0.00 4.52
3806 3951 7.979537 TGCTGTTACACATTTATACTCCTACAG 59.020 37.037 0.00 0.00 33.22 2.74
3808 3953 8.888579 ATGCTGTTACACATTTATACTCCTAC 57.111 34.615 0.00 0.00 0.00 3.18
3809 3954 8.924303 AGATGCTGTTACACATTTATACTCCTA 58.076 33.333 2.95 0.00 0.00 2.94
3810 3955 7.796054 AGATGCTGTTACACATTTATACTCCT 58.204 34.615 2.95 0.00 0.00 3.69
3811 3956 7.171678 GGAGATGCTGTTACACATTTATACTCC 59.828 40.741 0.00 0.00 0.00 3.85
3812 3957 7.710907 TGGAGATGCTGTTACACATTTATACTC 59.289 37.037 2.95 0.00 0.00 2.59
3822 3967 3.426695 GCATGTTGGAGATGCTGTTACAC 60.427 47.826 3.13 0.00 42.52 2.90
3828 3973 1.542472 TGTTGCATGTTGGAGATGCTG 59.458 47.619 10.73 0.00 45.45 4.41
3913 5245 2.739913 GAGGCGCTACAAACATACAACA 59.260 45.455 7.64 0.00 0.00 3.33
3917 5249 4.211374 CCATTAGAGGCGCTACAAACATAC 59.789 45.833 7.64 0.00 0.00 2.39
3938 5270 1.454847 GGGGTTCACACAACAGCCA 60.455 57.895 0.00 0.00 0.00 4.75
3939 5271 1.040339 TTGGGGTTCACACAACAGCC 61.040 55.000 0.00 0.00 0.00 4.85
3942 5274 1.468985 CAGTTGGGGTTCACACAACA 58.531 50.000 14.09 0.00 45.08 3.33
3943 5275 0.102300 GCAGTTGGGGTTCACACAAC 59.898 55.000 4.39 4.39 43.50 3.32
3944 5276 1.040339 GGCAGTTGGGGTTCACACAA 61.040 55.000 0.00 0.00 0.00 3.33
3946 5278 2.200337 GGGCAGTTGGGGTTCACAC 61.200 63.158 0.00 0.00 0.00 3.82
3947 5279 2.197324 GGGCAGTTGGGGTTCACA 59.803 61.111 0.00 0.00 0.00 3.58
3948 5280 1.903404 CAGGGCAGTTGGGGTTCAC 60.903 63.158 0.00 0.00 0.00 3.18
3949 5281 1.943730 AACAGGGCAGTTGGGGTTCA 61.944 55.000 0.00 0.00 0.00 3.18
3950 5282 1.152546 AACAGGGCAGTTGGGGTTC 60.153 57.895 0.00 0.00 0.00 3.62
3951 5283 1.457455 CAACAGGGCAGTTGGGGTT 60.457 57.895 12.56 0.00 43.89 4.11
3952 5284 1.943730 TTCAACAGGGCAGTTGGGGT 61.944 55.000 18.07 0.00 46.74 4.95
3953 5285 0.758685 TTTCAACAGGGCAGTTGGGG 60.759 55.000 18.07 0.00 46.74 4.96
3983 7501 2.511600 GGGTGCGAGGTGATTCGG 60.512 66.667 0.00 0.00 40.79 4.30
4031 7549 2.233271 CACACCAGAGTTGCCTTTCAT 58.767 47.619 0.00 0.00 0.00 2.57
4077 7595 0.393077 GGGACATCATACAGGTCGGG 59.607 60.000 0.00 0.00 32.39 5.14
4088 7606 1.537889 AACCACGGGAGGGACATCA 60.538 57.895 0.00 0.00 32.31 3.07
4245 7763 8.896744 CCTTTGATTATGCTGAAACTATTGAGA 58.103 33.333 0.00 0.00 0.00 3.27
4246 7764 8.133627 CCCTTTGATTATGCTGAAACTATTGAG 58.866 37.037 0.00 0.00 0.00 3.02
4247 7765 7.068593 CCCCTTTGATTATGCTGAAACTATTGA 59.931 37.037 0.00 0.00 0.00 2.57
4248 7766 7.147846 ACCCCTTTGATTATGCTGAAACTATTG 60.148 37.037 0.00 0.00 0.00 1.90
4249 7767 6.897413 ACCCCTTTGATTATGCTGAAACTATT 59.103 34.615 0.00 0.00 0.00 1.73
4250 7768 6.435164 ACCCCTTTGATTATGCTGAAACTAT 58.565 36.000 0.00 0.00 0.00 2.12
4251 7769 5.826643 ACCCCTTTGATTATGCTGAAACTA 58.173 37.500 0.00 0.00 0.00 2.24
4252 7770 4.677182 ACCCCTTTGATTATGCTGAAACT 58.323 39.130 0.00 0.00 0.00 2.66
4253 7771 5.652452 ACTACCCCTTTGATTATGCTGAAAC 59.348 40.000 0.00 0.00 0.00 2.78
4254 7772 5.652014 CACTACCCCTTTGATTATGCTGAAA 59.348 40.000 0.00 0.00 0.00 2.69
4255 7773 5.045213 TCACTACCCCTTTGATTATGCTGAA 60.045 40.000 0.00 0.00 0.00 3.02
4256 7774 4.473196 TCACTACCCCTTTGATTATGCTGA 59.527 41.667 0.00 0.00 0.00 4.26
4257 7775 4.780815 TCACTACCCCTTTGATTATGCTG 58.219 43.478 0.00 0.00 0.00 4.41
4258 7776 5.132648 TGATCACTACCCCTTTGATTATGCT 59.867 40.000 0.00 0.00 29.93 3.79
4259 7777 5.239525 GTGATCACTACCCCTTTGATTATGC 59.760 44.000 18.83 0.00 29.93 3.14
4260 7778 5.466728 CGTGATCACTACCCCTTTGATTATG 59.533 44.000 22.95 0.00 29.93 1.90
4261 7779 5.454755 CCGTGATCACTACCCCTTTGATTAT 60.455 44.000 22.95 0.00 29.93 1.28
4262 7780 4.141801 CCGTGATCACTACCCCTTTGATTA 60.142 45.833 22.95 0.00 29.93 1.75
4263 7781 3.370527 CCGTGATCACTACCCCTTTGATT 60.371 47.826 22.95 0.00 29.93 2.57
4264 7782 2.170607 CCGTGATCACTACCCCTTTGAT 59.829 50.000 22.95 0.00 32.53 2.57
4265 7783 1.553248 CCGTGATCACTACCCCTTTGA 59.447 52.381 22.95 0.00 0.00 2.69
4266 7784 1.278127 ACCGTGATCACTACCCCTTTG 59.722 52.381 22.95 4.61 0.00 2.77
4267 7785 1.652947 ACCGTGATCACTACCCCTTT 58.347 50.000 22.95 0.00 0.00 3.11
4268 7786 1.652947 AACCGTGATCACTACCCCTT 58.347 50.000 22.95 3.08 0.00 3.95
4269 7787 2.537633 TAACCGTGATCACTACCCCT 57.462 50.000 22.95 4.91 0.00 4.79
4270 7788 4.525487 TCATATAACCGTGATCACTACCCC 59.475 45.833 22.95 0.00 0.00 4.95
4271 7789 5.717078 TCATATAACCGTGATCACTACCC 57.283 43.478 22.95 0.00 0.00 3.69
4272 7790 5.577164 GCATCATATAACCGTGATCACTACC 59.423 44.000 22.95 0.00 32.98 3.18
4273 7791 6.390721 AGCATCATATAACCGTGATCACTAC 58.609 40.000 22.95 0.00 32.98 2.73
4274 7792 6.590234 AGCATCATATAACCGTGATCACTA 57.410 37.500 22.95 9.77 32.98 2.74
4275 7793 5.474578 AGCATCATATAACCGTGATCACT 57.525 39.130 22.95 7.76 32.98 3.41
4276 7794 5.577164 GGTAGCATCATATAACCGTGATCAC 59.423 44.000 16.21 16.21 32.98 3.06
4277 7795 5.337250 GGGTAGCATCATATAACCGTGATCA 60.337 44.000 0.00 0.00 32.98 2.92
4278 7796 5.109903 GGGTAGCATCATATAACCGTGATC 58.890 45.833 0.00 0.00 32.98 2.92
4279 7797 4.081087 GGGGTAGCATCATATAACCGTGAT 60.081 45.833 0.00 0.00 35.54 3.06
4283 7801 3.973206 TGGGGTAGCATCATATAACCG 57.027 47.619 0.00 0.00 28.71 4.44
4300 7818 3.070015 GCAAATTCCATCCTAACCATGGG 59.930 47.826 18.09 0.00 41.25 4.00
4367 7885 9.120538 TGCTCAAAGTATATTTGAATTCCCTAC 57.879 33.333 2.27 0.00 37.89 3.18
4368 7886 9.120538 GTGCTCAAAGTATATTTGAATTCCCTA 57.879 33.333 2.27 0.00 37.89 3.53
4371 7889 9.807649 ATTGTGCTCAAAGTATATTTGAATTCC 57.192 29.630 5.15 0.00 37.89 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.