Multiple sequence alignment - TraesCS5D01G112300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G112300 chr5D 100.000 2273 0 0 1 2273 128183107 128180835 0.000000e+00 4198
1 TraesCS5D01G112300 chr5D 95.000 220 11 0 1406 1625 374546727 374546946 1.670000e-91 346
2 TraesCS5D01G112300 chr5D 93.694 222 11 1 1407 1625 213836047 213835826 1.680000e-86 329
3 TraesCS5D01G112300 chr7B 97.945 1411 22 4 1 1404 622431992 622430582 0.000000e+00 2438
4 TraesCS5D01G112300 chr7B 97.803 1411 24 4 1 1404 662732890 662734300 0.000000e+00 2427
5 TraesCS5D01G112300 chr2A 97.945 1411 22 4 1 1404 543187637 543189047 0.000000e+00 2438
6 TraesCS5D01G112300 chr6B 97.800 1409 26 3 1 1404 515380595 515379187 0.000000e+00 2425
7 TraesCS5D01G112300 chr3B 97.660 1410 27 3 1 1404 201549278 201550687 0.000000e+00 2416
8 TraesCS5D01G112300 chr3B 97.307 1411 31 4 1 1404 201565405 201563995 0.000000e+00 2388
9 TraesCS5D01G112300 chr1D 97.307 1411 30 5 1 1404 254531574 254532983 0.000000e+00 2388
10 TraesCS5D01G112300 chr1D 95.699 651 25 3 1625 2273 222975896 222976545 0.000000e+00 1044
11 TraesCS5D01G112300 chr1D 95.077 650 29 3 1626 2273 222943989 222944637 0.000000e+00 1020
12 TraesCS5D01G112300 chr1B 97.236 1411 31 6 1 1404 633733494 633732085 0.000000e+00 2383
13 TraesCS5D01G112300 chr3A 97.023 1411 35 4 1 1404 695636376 695637786 0.000000e+00 2366
14 TraesCS5D01G112300 chr6D 95.532 649 27 2 1625 2271 398185885 398185237 0.000000e+00 1037
15 TraesCS5D01G112300 chr6D 95.084 651 30 2 1625 2273 26174050 26173400 0.000000e+00 1024
16 TraesCS5D01G112300 chr6D 95.092 652 29 3 1624 2273 26190634 26189984 0.000000e+00 1024
17 TraesCS5D01G112300 chr6D 95.516 223 10 0 1403 1625 160742510 160742288 7.720000e-95 357
18 TraesCS5D01G112300 chr4D 94.809 655 27 3 1626 2273 128557747 128558401 0.000000e+00 1014
19 TraesCS5D01G112300 chr4D 94.769 650 33 1 1625 2273 212922206 212922855 0.000000e+00 1011
20 TraesCS5D01G112300 chr4D 93.363 226 12 1 1403 1625 78872513 78872738 4.680000e-87 331
21 TraesCS5D01G112300 chr2D 94.632 652 31 4 1626 2273 570872732 570873383 0.000000e+00 1007
22 TraesCS5D01G112300 chr2D 94.144 222 10 1 1407 1625 530219219 530218998 3.620000e-88 335
23 TraesCS5D01G112300 chr2D 92.952 227 13 1 1402 1625 279846087 279846313 6.050000e-86 327
24 TraesCS5D01G112300 chr7D 94.729 645 31 3 1632 2273 424334554 424333910 0.000000e+00 1000
25 TraesCS5D01G112300 chr7D 93.243 222 12 1 1407 1625 178746473 178746252 7.830000e-85 324
26 TraesCS5D01G112300 chr3D 95.735 211 9 0 1415 1625 603822746 603822956 7.780000e-90 340
27 TraesCS5D01G112300 chr3D 94.170 223 10 1 1406 1625 84344644 84344422 1.010000e-88 337


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G112300 chr5D 128180835 128183107 2272 True 4198 4198 100.000 1 2273 1 chr5D.!!$R1 2272
1 TraesCS5D01G112300 chr7B 622430582 622431992 1410 True 2438 2438 97.945 1 1404 1 chr7B.!!$R1 1403
2 TraesCS5D01G112300 chr7B 662732890 662734300 1410 False 2427 2427 97.803 1 1404 1 chr7B.!!$F1 1403
3 TraesCS5D01G112300 chr2A 543187637 543189047 1410 False 2438 2438 97.945 1 1404 1 chr2A.!!$F1 1403
4 TraesCS5D01G112300 chr6B 515379187 515380595 1408 True 2425 2425 97.800 1 1404 1 chr6B.!!$R1 1403
5 TraesCS5D01G112300 chr3B 201549278 201550687 1409 False 2416 2416 97.660 1 1404 1 chr3B.!!$F1 1403
6 TraesCS5D01G112300 chr3B 201563995 201565405 1410 True 2388 2388 97.307 1 1404 1 chr3B.!!$R1 1403
7 TraesCS5D01G112300 chr1D 254531574 254532983 1409 False 2388 2388 97.307 1 1404 1 chr1D.!!$F3 1403
8 TraesCS5D01G112300 chr1D 222975896 222976545 649 False 1044 1044 95.699 1625 2273 1 chr1D.!!$F2 648
9 TraesCS5D01G112300 chr1D 222943989 222944637 648 False 1020 1020 95.077 1626 2273 1 chr1D.!!$F1 647
10 TraesCS5D01G112300 chr1B 633732085 633733494 1409 True 2383 2383 97.236 1 1404 1 chr1B.!!$R1 1403
11 TraesCS5D01G112300 chr3A 695636376 695637786 1410 False 2366 2366 97.023 1 1404 1 chr3A.!!$F1 1403
12 TraesCS5D01G112300 chr6D 398185237 398185885 648 True 1037 1037 95.532 1625 2271 1 chr6D.!!$R4 646
13 TraesCS5D01G112300 chr6D 26173400 26174050 650 True 1024 1024 95.084 1625 2273 1 chr6D.!!$R1 648
14 TraesCS5D01G112300 chr6D 26189984 26190634 650 True 1024 1024 95.092 1624 2273 1 chr6D.!!$R2 649
15 TraesCS5D01G112300 chr4D 128557747 128558401 654 False 1014 1014 94.809 1626 2273 1 chr4D.!!$F2 647
16 TraesCS5D01G112300 chr4D 212922206 212922855 649 False 1011 1011 94.769 1625 2273 1 chr4D.!!$F3 648
17 TraesCS5D01G112300 chr2D 570872732 570873383 651 False 1007 1007 94.632 1626 2273 1 chr2D.!!$F2 647
18 TraesCS5D01G112300 chr7D 424333910 424334554 644 True 1000 1000 94.729 1632 2273 1 chr7D.!!$R2 641

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
70 71 4.55333 TCTTAGCTAAACAGGTGGAAGG 57.447 45.455 7.74 0.0 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1617 1626 0.036164 CAACCCACGACATCAAGGGA 59.964 55.0 11.52 0.0 44.3 4.2 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 4.553330 TCTTAGCTAAACAGGTGGAAGG 57.447 45.455 7.74 0.00 0.00 3.46
237 238 6.014669 TGGTTTCCATTACTTTGAGAAATGGG 60.015 38.462 12.12 0.00 46.37 4.00
987 992 9.927668 ACTGACATAATTTTGTATTTTTCCTGG 57.072 29.630 1.22 0.00 0.00 4.45
1191 1197 2.635714 AGACTTTTGGGAAAACGTCGT 58.364 42.857 0.00 0.00 35.55 4.34
1408 1417 9.638239 TTTCATGGAATAGTGAATTAAGTTTGC 57.362 29.630 0.00 0.00 34.60 3.68
1409 1418 8.347004 TCATGGAATAGTGAATTAAGTTTGCA 57.653 30.769 0.00 0.00 0.00 4.08
1410 1419 8.970020 TCATGGAATAGTGAATTAAGTTTGCAT 58.030 29.630 0.00 0.00 0.00 3.96
1411 1420 9.027129 CATGGAATAGTGAATTAAGTTTGCATG 57.973 33.333 4.97 4.97 35.92 4.06
1412 1421 7.546358 TGGAATAGTGAATTAAGTTTGCATGG 58.454 34.615 0.00 0.00 0.00 3.66
1413 1422 6.980397 GGAATAGTGAATTAAGTTTGCATGGG 59.020 38.462 0.00 0.00 0.00 4.00
1414 1423 4.192429 AGTGAATTAAGTTTGCATGGGC 57.808 40.909 0.00 0.00 41.68 5.36
1415 1424 3.834231 AGTGAATTAAGTTTGCATGGGCT 59.166 39.130 0.00 0.00 41.91 5.19
1416 1425 4.284234 AGTGAATTAAGTTTGCATGGGCTT 59.716 37.500 0.00 0.00 41.91 4.35
1417 1426 4.627035 GTGAATTAAGTTTGCATGGGCTTC 59.373 41.667 0.00 0.00 41.91 3.86
1418 1427 4.527816 TGAATTAAGTTTGCATGGGCTTCT 59.472 37.500 0.00 0.00 41.91 2.85
1419 1428 5.011943 TGAATTAAGTTTGCATGGGCTTCTT 59.988 36.000 0.00 0.00 41.91 2.52
1420 1429 4.519540 TTAAGTTTGCATGGGCTTCTTC 57.480 40.909 0.00 0.00 41.91 2.87
1421 1430 2.299326 AGTTTGCATGGGCTTCTTCT 57.701 45.000 0.00 0.00 41.91 2.85
1422 1431 2.601905 AGTTTGCATGGGCTTCTTCTT 58.398 42.857 0.00 0.00 41.91 2.52
1423 1432 2.560105 AGTTTGCATGGGCTTCTTCTTC 59.440 45.455 0.00 0.00 41.91 2.87
1424 1433 2.560105 GTTTGCATGGGCTTCTTCTTCT 59.440 45.455 0.00 0.00 41.91 2.85
1425 1434 2.592102 TGCATGGGCTTCTTCTTCTT 57.408 45.000 0.00 0.00 41.91 2.52
1426 1435 2.165167 TGCATGGGCTTCTTCTTCTTG 58.835 47.619 0.00 0.00 41.91 3.02
1427 1436 1.475682 GCATGGGCTTCTTCTTCTTGG 59.524 52.381 0.00 0.00 36.96 3.61
1428 1437 2.881403 GCATGGGCTTCTTCTTCTTGGA 60.881 50.000 0.00 0.00 36.96 3.53
1429 1438 2.568623 TGGGCTTCTTCTTCTTGGAC 57.431 50.000 0.00 0.00 0.00 4.02
1430 1439 2.057922 TGGGCTTCTTCTTCTTGGACT 58.942 47.619 0.00 0.00 0.00 3.85
1431 1440 2.443255 TGGGCTTCTTCTTCTTGGACTT 59.557 45.455 0.00 0.00 0.00 3.01
1432 1441 2.816672 GGGCTTCTTCTTCTTGGACTTG 59.183 50.000 0.00 0.00 0.00 3.16
1433 1442 2.816672 GGCTTCTTCTTCTTGGACTTGG 59.183 50.000 0.00 0.00 0.00 3.61
1434 1443 3.496870 GGCTTCTTCTTCTTGGACTTGGA 60.497 47.826 0.00 0.00 0.00 3.53
1435 1444 3.750652 GCTTCTTCTTCTTGGACTTGGAG 59.249 47.826 0.00 0.00 0.00 3.86
1436 1445 4.503991 GCTTCTTCTTCTTGGACTTGGAGA 60.504 45.833 0.00 0.00 0.00 3.71
1437 1446 5.802821 GCTTCTTCTTCTTGGACTTGGAGAT 60.803 44.000 0.00 0.00 0.00 2.75
1438 1447 5.157940 TCTTCTTCTTGGACTTGGAGATG 57.842 43.478 0.00 0.00 0.00 2.90
1439 1448 3.340814 TCTTCTTGGACTTGGAGATGC 57.659 47.619 0.00 0.00 0.00 3.91
1440 1449 2.005451 CTTCTTGGACTTGGAGATGCG 58.995 52.381 0.00 0.00 0.00 4.73
1441 1450 0.976641 TCTTGGACTTGGAGATGCGT 59.023 50.000 0.00 0.00 0.00 5.24
1442 1451 1.081892 CTTGGACTTGGAGATGCGTG 58.918 55.000 0.00 0.00 0.00 5.34
1443 1452 0.684535 TTGGACTTGGAGATGCGTGA 59.315 50.000 0.00 0.00 0.00 4.35
1444 1453 0.247460 TGGACTTGGAGATGCGTGAG 59.753 55.000 0.00 0.00 0.00 3.51
1445 1454 0.532573 GGACTTGGAGATGCGTGAGA 59.467 55.000 0.00 0.00 0.00 3.27
1446 1455 1.470632 GGACTTGGAGATGCGTGAGAG 60.471 57.143 0.00 0.00 0.00 3.20
1447 1456 0.534412 ACTTGGAGATGCGTGAGAGG 59.466 55.000 0.00 0.00 0.00 3.69
1448 1457 0.534412 CTTGGAGATGCGTGAGAGGT 59.466 55.000 0.00 0.00 0.00 3.85
1449 1458 0.532573 TTGGAGATGCGTGAGAGGTC 59.467 55.000 0.00 0.00 0.00 3.85
1450 1459 0.323816 TGGAGATGCGTGAGAGGTCT 60.324 55.000 0.00 0.00 0.00 3.85
1451 1460 0.820871 GGAGATGCGTGAGAGGTCTT 59.179 55.000 0.00 0.00 0.00 3.01
1452 1461 1.202359 GGAGATGCGTGAGAGGTCTTC 60.202 57.143 0.00 0.00 0.00 2.87
1453 1462 1.474478 GAGATGCGTGAGAGGTCTTCA 59.526 52.381 0.00 0.00 0.00 3.02
1454 1463 1.476085 AGATGCGTGAGAGGTCTTCAG 59.524 52.381 0.00 0.00 0.00 3.02
1455 1464 1.474478 GATGCGTGAGAGGTCTTCAGA 59.526 52.381 0.00 0.00 0.00 3.27
1456 1465 1.328279 TGCGTGAGAGGTCTTCAGAA 58.672 50.000 0.00 0.00 0.00 3.02
1457 1466 1.895798 TGCGTGAGAGGTCTTCAGAAT 59.104 47.619 0.00 0.00 0.00 2.40
1458 1467 2.266554 GCGTGAGAGGTCTTCAGAATG 58.733 52.381 0.00 0.00 37.54 2.67
1459 1468 2.266554 CGTGAGAGGTCTTCAGAATGC 58.733 52.381 0.00 0.00 34.76 3.56
1460 1469 2.353109 CGTGAGAGGTCTTCAGAATGCA 60.353 50.000 0.00 0.00 34.76 3.96
1461 1470 2.999355 GTGAGAGGTCTTCAGAATGCAC 59.001 50.000 0.00 0.00 34.76 4.57
1462 1471 2.634453 TGAGAGGTCTTCAGAATGCACA 59.366 45.455 0.00 0.00 34.76 4.57
1463 1472 2.999355 GAGAGGTCTTCAGAATGCACAC 59.001 50.000 0.00 0.00 34.76 3.82
1464 1473 2.636893 AGAGGTCTTCAGAATGCACACT 59.363 45.455 0.00 0.00 34.76 3.55
1465 1474 3.072184 AGAGGTCTTCAGAATGCACACTT 59.928 43.478 0.00 0.00 34.76 3.16
1466 1475 3.144506 AGGTCTTCAGAATGCACACTTG 58.855 45.455 0.00 0.00 34.76 3.16
1467 1476 2.227388 GGTCTTCAGAATGCACACTTGG 59.773 50.000 0.00 0.00 34.76 3.61
1468 1477 2.880890 GTCTTCAGAATGCACACTTGGT 59.119 45.455 0.00 0.00 34.76 3.67
1476 1485 4.069869 CACACTTGGTGCAGGAGG 57.930 61.111 0.00 0.00 41.36 4.30
1477 1486 1.451504 CACACTTGGTGCAGGAGGA 59.548 57.895 0.00 0.00 41.36 3.71
1478 1487 0.037303 CACACTTGGTGCAGGAGGAT 59.963 55.000 0.00 0.00 41.36 3.24
1479 1488 0.326264 ACACTTGGTGCAGGAGGATC 59.674 55.000 0.00 0.00 36.98 3.36
1480 1489 0.325933 CACTTGGTGCAGGAGGATCA 59.674 55.000 0.00 0.00 36.25 2.92
1481 1490 0.617413 ACTTGGTGCAGGAGGATCAG 59.383 55.000 0.00 0.00 36.25 2.90
1482 1491 0.617413 CTTGGTGCAGGAGGATCAGT 59.383 55.000 0.00 0.00 36.25 3.41
1483 1492 0.325933 TTGGTGCAGGAGGATCAGTG 59.674 55.000 0.00 0.00 36.25 3.66
1484 1493 1.222936 GGTGCAGGAGGATCAGTGG 59.777 63.158 0.00 0.00 36.25 4.00
1485 1494 1.451028 GTGCAGGAGGATCAGTGGC 60.451 63.158 0.00 0.00 36.25 5.01
1486 1495 2.191641 GCAGGAGGATCAGTGGCC 59.808 66.667 0.00 0.00 36.25 5.36
1487 1496 2.673200 GCAGGAGGATCAGTGGCCA 61.673 63.158 0.00 0.00 36.25 5.36
1488 1497 1.525923 CAGGAGGATCAGTGGCCAG 59.474 63.158 5.11 0.00 36.25 4.85
1489 1498 0.979709 CAGGAGGATCAGTGGCCAGA 60.980 60.000 5.11 0.00 36.25 3.86
1490 1499 0.690411 AGGAGGATCAGTGGCCAGAG 60.690 60.000 5.11 0.57 36.25 3.35
1491 1500 1.694133 GGAGGATCAGTGGCCAGAGG 61.694 65.000 5.11 0.00 36.25 3.69
1492 1501 2.322638 GAGGATCAGTGGCCAGAGGC 62.323 65.000 5.11 0.00 41.49 4.70
1524 1533 2.334307 CACTTGGTGCAGTGGAAGG 58.666 57.895 0.00 0.00 40.60 3.46
1525 1534 1.529244 ACTTGGTGCAGTGGAAGGC 60.529 57.895 0.00 0.00 0.00 4.35
1526 1535 2.203480 TTGGTGCAGTGGAAGGCC 60.203 61.111 0.00 0.00 0.00 5.19
1527 1536 2.703675 CTTGGTGCAGTGGAAGGCCT 62.704 60.000 0.00 0.00 34.31 5.19
1528 1537 2.116125 GGTGCAGTGGAAGGCCTT 59.884 61.111 20.65 20.65 34.31 4.35
1529 1538 2.270986 GGTGCAGTGGAAGGCCTTG 61.271 63.158 26.25 10.32 34.31 3.61
1530 1539 1.228245 GTGCAGTGGAAGGCCTTGA 60.228 57.895 26.25 6.16 34.31 3.02
1531 1540 0.823356 GTGCAGTGGAAGGCCTTGAA 60.823 55.000 26.25 7.80 34.31 2.69
1532 1541 0.538057 TGCAGTGGAAGGCCTTGAAG 60.538 55.000 26.25 9.13 34.31 3.02
1533 1542 1.871126 GCAGTGGAAGGCCTTGAAGC 61.871 60.000 26.25 15.39 34.31 3.86
1541 1550 4.198087 GCCTTGAAGCCTTGGGTT 57.802 55.556 3.55 3.55 0.00 4.11
1542 1551 2.440946 GCCTTGAAGCCTTGGGTTT 58.559 52.632 5.53 0.00 0.00 3.27
1543 1552 0.318441 GCCTTGAAGCCTTGGGTTTC 59.682 55.000 5.53 4.88 42.10 2.78
1544 1553 2.001076 CCTTGAAGCCTTGGGTTTCT 57.999 50.000 12.81 0.00 42.22 2.52
1545 1554 2.319844 CCTTGAAGCCTTGGGTTTCTT 58.680 47.619 12.81 0.00 42.22 2.52
1546 1555 2.297315 CCTTGAAGCCTTGGGTTTCTTC 59.703 50.000 12.81 2.35 42.22 2.87
1547 1556 2.746279 TGAAGCCTTGGGTTTCTTCA 57.254 45.000 12.81 4.76 42.22 3.02
1548 1557 2.586425 TGAAGCCTTGGGTTTCTTCAG 58.414 47.619 12.81 0.00 42.22 3.02
1549 1558 1.270826 GAAGCCTTGGGTTTCTTCAGC 59.729 52.381 5.53 0.00 39.34 4.26
1550 1559 0.480252 AGCCTTGGGTTTCTTCAGCT 59.520 50.000 0.00 0.00 0.00 4.24
1551 1560 1.133356 AGCCTTGGGTTTCTTCAGCTT 60.133 47.619 0.00 0.00 0.00 3.74
1552 1561 1.270826 GCCTTGGGTTTCTTCAGCTTC 59.729 52.381 0.00 0.00 0.00 3.86
1553 1562 2.868899 CCTTGGGTTTCTTCAGCTTCT 58.131 47.619 0.00 0.00 0.00 2.85
1554 1563 3.225940 CCTTGGGTTTCTTCAGCTTCTT 58.774 45.455 0.00 0.00 0.00 2.52
1555 1564 4.398319 CCTTGGGTTTCTTCAGCTTCTTA 58.602 43.478 0.00 0.00 0.00 2.10
1556 1565 4.457257 CCTTGGGTTTCTTCAGCTTCTTAG 59.543 45.833 0.00 0.00 0.00 2.18
1557 1566 4.021102 TGGGTTTCTTCAGCTTCTTAGG 57.979 45.455 0.00 0.00 0.00 2.69
1558 1567 2.750166 GGGTTTCTTCAGCTTCTTAGGC 59.250 50.000 0.00 0.00 0.00 3.93
1559 1568 3.560239 GGGTTTCTTCAGCTTCTTAGGCT 60.560 47.826 0.00 0.00 41.07 4.58
1560 1569 4.075682 GGTTTCTTCAGCTTCTTAGGCTT 58.924 43.478 0.00 0.00 38.03 4.35
1561 1570 4.155099 GGTTTCTTCAGCTTCTTAGGCTTC 59.845 45.833 0.00 0.00 38.03 3.86
1562 1571 3.238108 TCTTCAGCTTCTTAGGCTTCG 57.762 47.619 0.00 0.00 38.03 3.79
1563 1572 2.093973 TCTTCAGCTTCTTAGGCTTCGG 60.094 50.000 0.00 0.00 38.03 4.30
1564 1573 1.267121 TCAGCTTCTTAGGCTTCGGT 58.733 50.000 0.00 0.00 38.03 4.69
1565 1574 1.066858 TCAGCTTCTTAGGCTTCGGTG 60.067 52.381 0.00 0.00 38.03 4.94
1566 1575 0.250513 AGCTTCTTAGGCTTCGGTGG 59.749 55.000 0.00 0.00 36.56 4.61
1567 1576 0.036294 GCTTCTTAGGCTTCGGTGGT 60.036 55.000 0.00 0.00 0.00 4.16
1568 1577 1.726853 CTTCTTAGGCTTCGGTGGTG 58.273 55.000 0.00 0.00 0.00 4.17
1569 1578 0.321298 TTCTTAGGCTTCGGTGGTGC 60.321 55.000 0.00 0.00 0.00 5.01
1570 1579 1.003839 CTTAGGCTTCGGTGGTGCA 60.004 57.895 0.00 0.00 0.00 4.57
1571 1580 1.003839 TTAGGCTTCGGTGGTGCAG 60.004 57.895 0.00 0.00 0.00 4.41
1572 1581 2.463589 TTAGGCTTCGGTGGTGCAGG 62.464 60.000 0.00 0.00 0.00 4.85
1583 1592 3.782244 GTGCAGGCGCTTCGTCAG 61.782 66.667 7.64 0.00 39.64 3.51
1584 1593 3.989787 TGCAGGCGCTTCGTCAGA 61.990 61.111 7.64 0.00 39.64 3.27
1585 1594 2.738521 GCAGGCGCTTCGTCAGAA 60.739 61.111 7.64 0.00 32.13 3.02
1586 1595 2.103042 GCAGGCGCTTCGTCAGAAT 61.103 57.895 7.64 0.00 35.56 2.40
1587 1596 2.002127 CAGGCGCTTCGTCAGAATC 58.998 57.895 7.64 0.00 35.56 2.52
1588 1597 0.737367 CAGGCGCTTCGTCAGAATCA 60.737 55.000 7.64 0.00 35.56 2.57
1589 1598 0.459237 AGGCGCTTCGTCAGAATCAG 60.459 55.000 7.64 0.00 35.56 2.90
1590 1599 1.346538 GCGCTTCGTCAGAATCAGC 59.653 57.895 0.00 0.00 35.56 4.26
1591 1600 1.627943 CGCTTCGTCAGAATCAGCG 59.372 57.895 4.45 4.45 40.39 5.18
1592 1601 1.073216 CGCTTCGTCAGAATCAGCGT 61.073 55.000 9.33 0.00 40.98 5.07
1593 1602 0.642800 GCTTCGTCAGAATCAGCGTC 59.357 55.000 0.00 0.00 35.56 5.19
1594 1603 1.982612 CTTCGTCAGAATCAGCGTCA 58.017 50.000 0.00 0.00 35.56 4.35
1595 1604 2.534298 CTTCGTCAGAATCAGCGTCAT 58.466 47.619 0.00 0.00 35.56 3.06
1596 1605 2.194800 TCGTCAGAATCAGCGTCATC 57.805 50.000 0.00 0.00 0.00 2.92
1597 1606 1.745653 TCGTCAGAATCAGCGTCATCT 59.254 47.619 0.00 0.00 0.00 2.90
1598 1607 1.851053 CGTCAGAATCAGCGTCATCTG 59.149 52.381 6.36 6.36 40.46 2.90
1599 1608 1.592081 GTCAGAATCAGCGTCATCTGC 59.408 52.381 7.48 0.00 39.27 4.26
1600 1609 0.575859 CAGAATCAGCGTCATCTGCG 59.424 55.000 0.00 0.00 37.44 5.18
1601 1610 0.529337 AGAATCAGCGTCATCTGCGG 60.529 55.000 0.00 0.00 37.44 5.69
1602 1611 0.528466 GAATCAGCGTCATCTGCGGA 60.528 55.000 0.00 0.00 40.68 5.54
1603 1612 0.529337 AATCAGCGTCATCTGCGGAG 60.529 55.000 0.00 0.00 39.80 4.63
1604 1613 2.360949 ATCAGCGTCATCTGCGGAGG 62.361 60.000 3.37 0.00 39.80 4.30
1605 1614 3.842923 AGCGTCATCTGCGGAGGG 61.843 66.667 7.45 0.00 37.44 4.30
1606 1615 3.838271 GCGTCATCTGCGGAGGGA 61.838 66.667 7.45 1.20 0.00 4.20
1607 1616 3.133014 CGTCATCTGCGGAGGGAT 58.867 61.111 7.45 0.00 0.00 3.85
1608 1617 1.006805 CGTCATCTGCGGAGGGATC 60.007 63.158 7.45 0.00 0.00 3.36
1609 1618 1.369321 GTCATCTGCGGAGGGATCC 59.631 63.158 7.45 1.92 0.00 3.36
1610 1619 1.075301 TCATCTGCGGAGGGATCCA 60.075 57.895 15.23 0.00 0.00 3.41
1611 1620 1.070445 CATCTGCGGAGGGATCCAC 59.930 63.158 15.23 6.86 0.00 4.02
1612 1621 2.502492 ATCTGCGGAGGGATCCACG 61.502 63.158 15.23 15.54 0.00 4.94
1613 1622 4.227134 CTGCGGAGGGATCCACGG 62.227 72.222 15.23 12.03 0.00 4.94
1616 1625 4.227134 CGGAGGGATCCACGGCTG 62.227 72.222 15.23 0.42 0.00 4.85
1617 1626 3.083997 GGAGGGATCCACGGCTGT 61.084 66.667 15.23 0.00 0.00 4.40
1618 1627 2.501610 GAGGGATCCACGGCTGTC 59.498 66.667 15.23 0.00 0.00 3.51
1619 1628 3.083997 AGGGATCCACGGCTGTCC 61.084 66.667 15.23 0.00 0.00 4.02
1620 1629 4.176752 GGGATCCACGGCTGTCCC 62.177 72.222 15.23 4.49 43.20 4.46
1621 1630 3.083997 GGATCCACGGCTGTCCCT 61.084 66.667 6.95 0.00 0.00 4.20
1622 1631 2.670148 GGATCCACGGCTGTCCCTT 61.670 63.158 6.95 0.00 0.00 3.95
1630 1639 1.296715 GGCTGTCCCTTGATGTCGT 59.703 57.895 0.00 0.00 0.00 4.34
1716 1725 3.008517 TGGAAGCGGGATGAGGCA 61.009 61.111 0.00 0.00 0.00 4.75
1717 1726 2.203126 GGAAGCGGGATGAGGCAG 60.203 66.667 0.00 0.00 0.00 4.85
1872 1881 2.747855 GGTGGAAGAAGGCAGGCG 60.748 66.667 0.00 0.00 0.00 5.52
1962 1978 3.507356 GGGTTTATATAGGCCTACCCCCT 60.507 52.174 23.88 7.89 39.42 4.79
2226 2243 4.111016 TAGCCACACCGCGTCTCG 62.111 66.667 4.92 0.00 38.08 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
184 185 9.681062 TCTCTTATAGGAAATGGTTCGAAAATT 57.319 29.630 0.00 0.00 34.28 1.82
588 593 9.599866 CATCTGTATCCTTAACATACTGAAACA 57.400 33.333 10.85 0.00 37.87 2.83
1191 1197 1.067915 GCCAAATAAGCCAGCAAACGA 60.068 47.619 0.00 0.00 0.00 3.85
1343 1352 3.756739 CTCAAAGCGAGGCTCATCT 57.243 52.632 15.95 7.88 38.25 2.90
1394 1403 4.192429 AGCCCATGCAAACTTAATTCAC 57.808 40.909 0.00 0.00 41.13 3.18
1404 1413 2.880443 AGAAGAAGAAGCCCATGCAAA 58.120 42.857 0.00 0.00 41.13 3.68
1405 1414 2.559668 CAAGAAGAAGAAGCCCATGCAA 59.440 45.455 0.00 0.00 41.13 4.08
1406 1415 2.165167 CAAGAAGAAGAAGCCCATGCA 58.835 47.619 0.00 0.00 41.13 3.96
1407 1416 1.475682 CCAAGAAGAAGAAGCCCATGC 59.524 52.381 0.00 0.00 37.95 4.06
1408 1417 2.751806 GTCCAAGAAGAAGAAGCCCATG 59.248 50.000 0.00 0.00 0.00 3.66
1409 1418 2.646798 AGTCCAAGAAGAAGAAGCCCAT 59.353 45.455 0.00 0.00 0.00 4.00
1410 1419 2.057922 AGTCCAAGAAGAAGAAGCCCA 58.942 47.619 0.00 0.00 0.00 5.36
1411 1420 2.816672 CAAGTCCAAGAAGAAGAAGCCC 59.183 50.000 0.00 0.00 0.00 5.19
1412 1421 2.816672 CCAAGTCCAAGAAGAAGAAGCC 59.183 50.000 0.00 0.00 0.00 4.35
1413 1422 3.744660 TCCAAGTCCAAGAAGAAGAAGC 58.255 45.455 0.00 0.00 0.00 3.86
1414 1423 5.220710 TCTCCAAGTCCAAGAAGAAGAAG 57.779 43.478 0.00 0.00 0.00 2.85
1415 1424 5.555017 CATCTCCAAGTCCAAGAAGAAGAA 58.445 41.667 0.00 0.00 0.00 2.52
1416 1425 4.564406 GCATCTCCAAGTCCAAGAAGAAGA 60.564 45.833 0.00 0.00 0.00 2.87
1417 1426 3.688673 GCATCTCCAAGTCCAAGAAGAAG 59.311 47.826 0.00 0.00 0.00 2.85
1418 1427 3.679389 GCATCTCCAAGTCCAAGAAGAA 58.321 45.455 0.00 0.00 0.00 2.52
1419 1428 2.354103 CGCATCTCCAAGTCCAAGAAGA 60.354 50.000 0.00 0.00 0.00 2.87
1420 1429 2.005451 CGCATCTCCAAGTCCAAGAAG 58.995 52.381 0.00 0.00 0.00 2.85
1421 1430 1.347707 ACGCATCTCCAAGTCCAAGAA 59.652 47.619 0.00 0.00 0.00 2.52
1422 1431 0.976641 ACGCATCTCCAAGTCCAAGA 59.023 50.000 0.00 0.00 0.00 3.02
1423 1432 1.081892 CACGCATCTCCAAGTCCAAG 58.918 55.000 0.00 0.00 0.00 3.61
1424 1433 0.684535 TCACGCATCTCCAAGTCCAA 59.315 50.000 0.00 0.00 0.00 3.53
1425 1434 0.247460 CTCACGCATCTCCAAGTCCA 59.753 55.000 0.00 0.00 0.00 4.02
1426 1435 0.532573 TCTCACGCATCTCCAAGTCC 59.467 55.000 0.00 0.00 0.00 3.85
1427 1436 1.470632 CCTCTCACGCATCTCCAAGTC 60.471 57.143 0.00 0.00 0.00 3.01
1428 1437 0.534412 CCTCTCACGCATCTCCAAGT 59.466 55.000 0.00 0.00 0.00 3.16
1429 1438 0.534412 ACCTCTCACGCATCTCCAAG 59.466 55.000 0.00 0.00 0.00 3.61
1430 1439 0.532573 GACCTCTCACGCATCTCCAA 59.467 55.000 0.00 0.00 0.00 3.53
1431 1440 0.323816 AGACCTCTCACGCATCTCCA 60.324 55.000 0.00 0.00 0.00 3.86
1432 1441 0.820871 AAGACCTCTCACGCATCTCC 59.179 55.000 0.00 0.00 0.00 3.71
1433 1442 1.474478 TGAAGACCTCTCACGCATCTC 59.526 52.381 0.00 0.00 0.00 2.75
1434 1443 1.476085 CTGAAGACCTCTCACGCATCT 59.524 52.381 0.00 0.00 0.00 2.90
1435 1444 1.474478 TCTGAAGACCTCTCACGCATC 59.526 52.381 0.00 0.00 0.00 3.91
1436 1445 1.550327 TCTGAAGACCTCTCACGCAT 58.450 50.000 0.00 0.00 0.00 4.73
1437 1446 1.328279 TTCTGAAGACCTCTCACGCA 58.672 50.000 0.00 0.00 0.00 5.24
1438 1447 2.266554 CATTCTGAAGACCTCTCACGC 58.733 52.381 0.00 0.00 0.00 5.34
1439 1448 2.266554 GCATTCTGAAGACCTCTCACG 58.733 52.381 0.00 0.00 0.00 4.35
1440 1449 2.999355 GTGCATTCTGAAGACCTCTCAC 59.001 50.000 0.00 0.00 0.00 3.51
1441 1450 2.634453 TGTGCATTCTGAAGACCTCTCA 59.366 45.455 0.00 0.00 0.00 3.27
1442 1451 2.999355 GTGTGCATTCTGAAGACCTCTC 59.001 50.000 0.00 0.00 0.00 3.20
1443 1452 2.636893 AGTGTGCATTCTGAAGACCTCT 59.363 45.455 0.00 0.00 0.00 3.69
1444 1453 3.051081 AGTGTGCATTCTGAAGACCTC 57.949 47.619 0.00 0.00 0.00 3.85
1445 1454 3.144506 CAAGTGTGCATTCTGAAGACCT 58.855 45.455 0.00 0.00 0.00 3.85
1446 1455 2.227388 CCAAGTGTGCATTCTGAAGACC 59.773 50.000 0.00 0.00 0.00 3.85
1447 1456 2.880890 ACCAAGTGTGCATTCTGAAGAC 59.119 45.455 0.00 0.00 0.00 3.01
1448 1457 2.880268 CACCAAGTGTGCATTCTGAAGA 59.120 45.455 0.00 0.00 38.34 2.87
1449 1458 3.278367 CACCAAGTGTGCATTCTGAAG 57.722 47.619 0.00 0.00 38.34 3.02
1460 1469 0.326264 GATCCTCCTGCACCAAGTGT 59.674 55.000 0.00 0.00 35.75 3.55
1461 1470 0.325933 TGATCCTCCTGCACCAAGTG 59.674 55.000 0.00 0.00 36.51 3.16
1462 1471 0.617413 CTGATCCTCCTGCACCAAGT 59.383 55.000 0.00 0.00 0.00 3.16
1463 1472 0.617413 ACTGATCCTCCTGCACCAAG 59.383 55.000 0.00 0.00 0.00 3.61
1464 1473 0.325933 CACTGATCCTCCTGCACCAA 59.674 55.000 0.00 0.00 0.00 3.67
1465 1474 1.556373 CCACTGATCCTCCTGCACCA 61.556 60.000 0.00 0.00 0.00 4.17
1466 1475 1.222936 CCACTGATCCTCCTGCACC 59.777 63.158 0.00 0.00 0.00 5.01
1467 1476 1.451028 GCCACTGATCCTCCTGCAC 60.451 63.158 0.00 0.00 0.00 4.57
1468 1477 2.673200 GGCCACTGATCCTCCTGCA 61.673 63.158 0.00 0.00 0.00 4.41
1469 1478 2.191641 GGCCACTGATCCTCCTGC 59.808 66.667 0.00 0.00 0.00 4.85
1470 1479 0.979709 TCTGGCCACTGATCCTCCTG 60.980 60.000 0.00 0.00 0.00 3.86
1471 1480 0.690411 CTCTGGCCACTGATCCTCCT 60.690 60.000 0.00 0.00 0.00 3.69
1472 1481 1.694133 CCTCTGGCCACTGATCCTCC 61.694 65.000 0.00 0.00 0.00 4.30
1473 1482 1.828768 CCTCTGGCCACTGATCCTC 59.171 63.158 0.00 0.00 0.00 3.71
1474 1483 2.373707 GCCTCTGGCCACTGATCCT 61.374 63.158 0.00 0.00 44.06 3.24
1475 1484 2.191641 GCCTCTGGCCACTGATCC 59.808 66.667 0.00 0.00 44.06 3.36
1497 1506 2.856032 CACCAAGTGCTTCGCGAG 59.144 61.111 9.59 4.97 0.00 5.03
1506 1515 1.799258 GCCTTCCACTGCACCAAGTG 61.799 60.000 0.00 0.00 45.93 3.16
1507 1516 1.529244 GCCTTCCACTGCACCAAGT 60.529 57.895 0.00 0.00 0.00 3.16
1508 1517 2.270986 GGCCTTCCACTGCACCAAG 61.271 63.158 0.00 0.00 0.00 3.61
1509 1518 2.203480 GGCCTTCCACTGCACCAA 60.203 61.111 0.00 0.00 0.00 3.67
1510 1519 2.766925 AAGGCCTTCCACTGCACCA 61.767 57.895 13.78 0.00 33.74 4.17
1511 1520 2.116125 AAGGCCTTCCACTGCACC 59.884 61.111 13.78 0.00 33.74 5.01
1512 1521 0.823356 TTCAAGGCCTTCCACTGCAC 60.823 55.000 17.29 0.00 33.74 4.57
1513 1522 0.538057 CTTCAAGGCCTTCCACTGCA 60.538 55.000 17.29 0.00 33.74 4.41
1514 1523 1.871126 GCTTCAAGGCCTTCCACTGC 61.871 60.000 17.29 11.99 33.74 4.40
1515 1524 2.261215 GCTTCAAGGCCTTCCACTG 58.739 57.895 17.29 4.76 33.74 3.66
1516 1525 4.830573 GCTTCAAGGCCTTCCACT 57.169 55.556 17.29 0.00 33.74 4.00
1524 1533 0.318441 GAAACCCAAGGCTTCAAGGC 59.682 55.000 1.78 1.78 41.73 4.35
1525 1534 2.001076 AGAAACCCAAGGCTTCAAGG 57.999 50.000 0.00 0.89 0.00 3.61
1526 1535 2.958355 TGAAGAAACCCAAGGCTTCAAG 59.042 45.455 0.00 0.00 42.47 3.02
1527 1536 2.958355 CTGAAGAAACCCAAGGCTTCAA 59.042 45.455 0.00 0.00 44.09 2.69
1528 1537 2.586425 CTGAAGAAACCCAAGGCTTCA 58.414 47.619 0.00 0.00 43.00 3.02
1529 1538 1.270826 GCTGAAGAAACCCAAGGCTTC 59.729 52.381 0.00 0.00 37.76 3.86
1530 1539 1.133356 AGCTGAAGAAACCCAAGGCTT 60.133 47.619 0.00 0.00 0.00 4.35
1531 1540 0.480252 AGCTGAAGAAACCCAAGGCT 59.520 50.000 0.00 0.00 0.00 4.58
1532 1541 1.270826 GAAGCTGAAGAAACCCAAGGC 59.729 52.381 0.00 0.00 0.00 4.35
1533 1542 2.868899 AGAAGCTGAAGAAACCCAAGG 58.131 47.619 0.00 0.00 0.00 3.61
1534 1543 4.457257 CCTAAGAAGCTGAAGAAACCCAAG 59.543 45.833 0.00 0.00 0.00 3.61
1535 1544 4.398319 CCTAAGAAGCTGAAGAAACCCAA 58.602 43.478 0.00 0.00 0.00 4.12
1536 1545 3.810743 GCCTAAGAAGCTGAAGAAACCCA 60.811 47.826 0.00 0.00 0.00 4.51
1537 1546 2.750166 GCCTAAGAAGCTGAAGAAACCC 59.250 50.000 0.00 0.00 0.00 4.11
1538 1547 3.680490 AGCCTAAGAAGCTGAAGAAACC 58.320 45.455 0.00 0.00 39.69 3.27
1539 1548 4.143009 CGAAGCCTAAGAAGCTGAAGAAAC 60.143 45.833 0.00 0.00 40.49 2.78
1540 1549 3.997021 CGAAGCCTAAGAAGCTGAAGAAA 59.003 43.478 0.00 0.00 40.49 2.52
1541 1550 3.589988 CGAAGCCTAAGAAGCTGAAGAA 58.410 45.455 0.00 0.00 40.49 2.52
1542 1551 2.093973 CCGAAGCCTAAGAAGCTGAAGA 60.094 50.000 0.00 0.00 40.49 2.87
1543 1552 2.275318 CCGAAGCCTAAGAAGCTGAAG 58.725 52.381 0.00 0.00 40.49 3.02
1544 1553 1.623811 ACCGAAGCCTAAGAAGCTGAA 59.376 47.619 0.00 0.00 40.49 3.02
1545 1554 1.066858 CACCGAAGCCTAAGAAGCTGA 60.067 52.381 0.00 0.00 40.49 4.26
1546 1555 1.363744 CACCGAAGCCTAAGAAGCTG 58.636 55.000 0.00 0.00 40.49 4.24
1547 1556 0.250513 CCACCGAAGCCTAAGAAGCT 59.749 55.000 0.00 0.00 44.19 3.74
1548 1557 0.036294 ACCACCGAAGCCTAAGAAGC 60.036 55.000 0.00 0.00 0.00 3.86
1549 1558 1.726853 CACCACCGAAGCCTAAGAAG 58.273 55.000 0.00 0.00 0.00 2.85
1550 1559 0.321298 GCACCACCGAAGCCTAAGAA 60.321 55.000 0.00 0.00 0.00 2.52
1551 1560 1.295423 GCACCACCGAAGCCTAAGA 59.705 57.895 0.00 0.00 0.00 2.10
1552 1561 1.003839 TGCACCACCGAAGCCTAAG 60.004 57.895 0.00 0.00 0.00 2.18
1553 1562 1.003839 CTGCACCACCGAAGCCTAA 60.004 57.895 0.00 0.00 0.00 2.69
1554 1563 2.662596 CTGCACCACCGAAGCCTA 59.337 61.111 0.00 0.00 0.00 3.93
1555 1564 4.335647 CCTGCACCACCGAAGCCT 62.336 66.667 0.00 0.00 0.00 4.58
1566 1575 3.782244 CTGACGAAGCGCCTGCAC 61.782 66.667 2.29 0.00 46.23 4.57
1567 1576 2.786539 ATTCTGACGAAGCGCCTGCA 62.787 55.000 2.29 0.00 46.23 4.41
1568 1577 2.029904 GATTCTGACGAAGCGCCTGC 62.030 60.000 2.29 0.00 43.24 4.85
1569 1578 0.737367 TGATTCTGACGAAGCGCCTG 60.737 55.000 2.29 0.00 38.35 4.85
1570 1579 0.459237 CTGATTCTGACGAAGCGCCT 60.459 55.000 2.29 0.00 38.35 5.52
1571 1580 2.002127 CTGATTCTGACGAAGCGCC 58.998 57.895 2.29 0.00 38.35 6.53
1572 1581 1.346538 GCTGATTCTGACGAAGCGC 59.653 57.895 0.00 0.00 38.35 5.92
1573 1582 1.073216 ACGCTGATTCTGACGAAGCG 61.073 55.000 19.43 19.43 43.05 4.68
1574 1583 0.642800 GACGCTGATTCTGACGAAGC 59.357 55.000 11.88 0.00 36.14 3.86
1575 1584 1.982612 TGACGCTGATTCTGACGAAG 58.017 50.000 11.88 0.00 31.60 3.79
1576 1585 2.164422 AGATGACGCTGATTCTGACGAA 59.836 45.455 11.88 0.00 0.00 3.85
1577 1586 1.745653 AGATGACGCTGATTCTGACGA 59.254 47.619 11.88 0.00 0.00 4.20
1578 1587 1.851053 CAGATGACGCTGATTCTGACG 59.149 52.381 0.00 1.18 38.25 4.35
1579 1588 1.592081 GCAGATGACGCTGATTCTGAC 59.408 52.381 3.11 0.00 38.25 3.51
1580 1589 1.800286 CGCAGATGACGCTGATTCTGA 60.800 52.381 3.11 0.00 38.25 3.27
1581 1590 0.575859 CGCAGATGACGCTGATTCTG 59.424 55.000 0.00 0.00 38.14 3.02
1582 1591 0.529337 CCGCAGATGACGCTGATTCT 60.529 55.000 0.00 0.00 38.14 2.40
1583 1592 0.528466 TCCGCAGATGACGCTGATTC 60.528 55.000 0.00 0.00 38.14 2.52
1584 1593 0.529337 CTCCGCAGATGACGCTGATT 60.529 55.000 0.00 0.00 38.14 2.57
1585 1594 1.067084 CTCCGCAGATGACGCTGAT 59.933 57.895 0.00 0.00 38.14 2.90
1586 1595 2.491621 CTCCGCAGATGACGCTGA 59.508 61.111 0.00 0.00 38.14 4.26
1587 1596 2.584418 CCTCCGCAGATGACGCTG 60.584 66.667 0.00 0.00 38.91 5.18
1588 1597 3.842923 CCCTCCGCAGATGACGCT 61.843 66.667 0.00 0.00 0.00 5.07
1589 1598 3.157217 ATCCCTCCGCAGATGACGC 62.157 63.158 0.00 0.00 0.00 5.19
1590 1599 1.006805 GATCCCTCCGCAGATGACG 60.007 63.158 0.00 0.00 0.00 4.35
1591 1600 1.369321 GGATCCCTCCGCAGATGAC 59.631 63.158 0.00 0.00 0.00 3.06
1592 1601 1.075301 TGGATCCCTCCGCAGATGA 60.075 57.895 9.90 0.00 45.37 2.92
1593 1602 3.554716 TGGATCCCTCCGCAGATG 58.445 61.111 9.90 0.00 45.37 2.90
1599 1608 4.227134 CAGCCGTGGATCCCTCCG 62.227 72.222 9.90 8.89 45.37 4.63
1600 1609 3.083997 ACAGCCGTGGATCCCTCC 61.084 66.667 9.90 0.00 42.45 4.30
1601 1610 2.501610 GACAGCCGTGGATCCCTC 59.498 66.667 9.90 1.36 0.00 4.30
1602 1611 3.083997 GGACAGCCGTGGATCCCT 61.084 66.667 9.90 0.00 0.00 4.20
1603 1612 4.176752 GGGACAGCCGTGGATCCC 62.177 72.222 9.90 7.36 44.07 3.85
1604 1613 2.670148 AAGGGACAGCCGTGGATCC 61.670 63.158 4.20 4.20 33.83 3.36
1605 1614 1.450312 CAAGGGACAGCCGTGGATC 60.450 63.158 0.00 0.00 33.83 3.36
1606 1615 1.274703 ATCAAGGGACAGCCGTGGAT 61.275 55.000 0.00 0.00 37.78 3.41
1607 1616 1.918293 ATCAAGGGACAGCCGTGGA 60.918 57.895 0.00 0.00 36.48 4.02
1608 1617 1.746615 CATCAAGGGACAGCCGTGG 60.747 63.158 0.00 0.00 33.83 4.94
1609 1618 1.003355 ACATCAAGGGACAGCCGTG 60.003 57.895 0.00 0.00 33.83 4.94
1610 1619 1.296715 GACATCAAGGGACAGCCGT 59.703 57.895 0.00 0.00 33.83 5.68
1611 1620 1.811266 CGACATCAAGGGACAGCCG 60.811 63.158 0.00 0.00 33.83 5.52
1612 1621 1.021390 CACGACATCAAGGGACAGCC 61.021 60.000 0.00 0.00 0.00 4.85
1613 1622 1.021390 CCACGACATCAAGGGACAGC 61.021 60.000 0.00 0.00 0.00 4.40
1614 1623 0.391661 CCCACGACATCAAGGGACAG 60.392 60.000 0.00 0.00 44.30 3.51
1615 1624 1.125093 ACCCACGACATCAAGGGACA 61.125 55.000 11.52 0.00 44.30 4.02
1616 1625 0.036306 AACCCACGACATCAAGGGAC 59.964 55.000 11.52 0.00 44.30 4.46
1617 1626 0.036164 CAACCCACGACATCAAGGGA 59.964 55.000 11.52 0.00 44.30 4.20
1618 1627 0.960364 CCAACCCACGACATCAAGGG 60.960 60.000 0.00 0.00 46.96 3.95
1619 1628 0.960364 CCCAACCCACGACATCAAGG 60.960 60.000 0.00 0.00 0.00 3.61
1620 1629 0.250727 ACCCAACCCACGACATCAAG 60.251 55.000 0.00 0.00 0.00 3.02
1621 1630 0.536233 CACCCAACCCACGACATCAA 60.536 55.000 0.00 0.00 0.00 2.57
1622 1631 1.072332 CACCCAACCCACGACATCA 59.928 57.895 0.00 0.00 0.00 3.07
1630 1639 1.921346 ATAGGTCGCACCCAACCCA 60.921 57.895 2.18 0.00 39.75 4.51
1716 1725 4.112341 GCCGGCGTACGTGTCTCT 62.112 66.667 12.58 0.00 42.24 3.10
1962 1978 3.393278 GGCAGATTACCAATGTACCCCTA 59.607 47.826 0.00 0.00 0.00 3.53
2226 2243 2.870372 GTGCGCCATCAACCAGAC 59.130 61.111 4.18 0.00 0.00 3.51
2252 2269 3.955044 GGCGGCTTATCCCTCCCC 61.955 72.222 0.00 0.00 0.00 4.81


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.