Multiple sequence alignment - TraesCS5D01G111700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G111700 chr5D 100.000 3867 0 0 1 3867 126959834 126955968 0.000000e+00 7142.0
1 TraesCS5D01G111700 chr5D 100.000 184 0 0 4205 4388 126955630 126955447 1.510000e-89 340.0
2 TraesCS5D01G111700 chr5D 79.235 183 21 7 1117 1298 404239373 404239539 1.290000e-20 111.0
3 TraesCS5D01G111700 chr5A 95.452 3826 110 35 1 3805 142753156 142749374 0.000000e+00 6043.0
4 TraesCS5D01G111700 chr5A 88.021 192 15 3 4205 4388 142748697 142748506 2.050000e-53 220.0
5 TraesCS5D01G111700 chr5B 94.770 2371 75 18 1 2353 140099364 140101703 0.000000e+00 3646.0
6 TraesCS5D01G111700 chr5B 94.981 1315 57 5 2349 3656 140114557 140115869 0.000000e+00 2054.0
7 TraesCS5D01G111700 chr5B 87.407 135 14 2 4257 4388 28741822 28741956 7.600000e-33 152.0
8 TraesCS5D01G111700 chr4D 73.382 958 222 30 1622 2564 475954163 475953224 4.230000e-85 326.0
9 TraesCS5D01G111700 chr4A 72.222 1188 265 49 1622 2769 682991851 682990689 5.510000e-79 305.0
10 TraesCS5D01G111700 chr6D 88.148 135 15 1 4255 4388 326569423 326569557 4.540000e-35 159.0
11 TraesCS5D01G111700 chr6D 84.892 139 18 3 4253 4388 81331874 81331736 2.130000e-28 137.0
12 TraesCS5D01G111700 chr2B 89.147 129 12 1 4256 4382 36994256 36994384 4.540000e-35 159.0
13 TraesCS5D01G111700 chr2B 81.818 77 10 4 1310 1384 771926462 771926536 1.320000e-05 62.1
14 TraesCS5D01G111700 chr2B 88.000 50 5 1 1291 1340 772823716 772823668 1.700000e-04 58.4
15 TraesCS5D01G111700 chr1A 87.407 135 15 1 4256 4388 287382374 287382240 2.110000e-33 154.0
16 TraesCS5D01G111700 chr2D 87.692 130 13 2 4255 4382 528421543 528421671 9.830000e-32 148.0
17 TraesCS5D01G111700 chr2D 90.541 74 7 0 1400 1473 89428898 89428825 1.000000e-16 99.0
18 TraesCS5D01G111700 chr2D 100.000 31 0 0 1310 1340 629420423 629420393 1.700000e-04 58.4
19 TraesCS5D01G111700 chr2D 80.519 77 11 4 1310 1384 628639720 628639646 6.130000e-04 56.5
20 TraesCS5D01G111700 chr7D 86.131 137 17 2 4247 4382 104189138 104189273 3.540000e-31 147.0
21 TraesCS5D01G111700 chr7D 85.714 98 14 0 3561 3658 429707842 429707939 2.160000e-18 104.0
22 TraesCS5D01G111700 chr3B 85.385 130 17 1 4255 4382 796652907 796653036 2.750000e-27 134.0
23 TraesCS5D01G111700 chr2A 81.250 80 15 0 3586 3665 713533639 713533560 1.020000e-06 65.8
24 TraesCS5D01G111700 chr2A 81.818 77 10 4 1310 1384 758715108 758715182 1.320000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G111700 chr5D 126955447 126959834 4387 True 3741.0 7142 100.0000 1 4388 2 chr5D.!!$R1 4387
1 TraesCS5D01G111700 chr5A 142748506 142753156 4650 True 3131.5 6043 91.7365 1 4388 2 chr5A.!!$R1 4387
2 TraesCS5D01G111700 chr5B 140099364 140101703 2339 False 3646.0 3646 94.7700 1 2353 1 chr5B.!!$F2 2352
3 TraesCS5D01G111700 chr5B 140114557 140115869 1312 False 2054.0 2054 94.9810 2349 3656 1 chr5B.!!$F3 1307
4 TraesCS5D01G111700 chr4D 475953224 475954163 939 True 326.0 326 73.3820 1622 2564 1 chr4D.!!$R1 942
5 TraesCS5D01G111700 chr4A 682990689 682991851 1162 True 305.0 305 72.2220 1622 2769 1 chr4A.!!$R1 1147

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
931 962 0.034756 ACAACGCTGCACATCCAGTA 59.965 50.000 0.0 0.0 35.28 2.74 F
994 1025 0.534412 CCTGCTCGATCTTGGACACT 59.466 55.000 0.0 0.0 0.00 3.55 F
2374 2405 1.410517 GCCTCCTCGACAAGATCATCA 59.589 52.381 0.0 0.0 0.00 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1890 1921 0.450583 ATGCGTCGTAGAAGAAGCGA 59.549 50.000 0.00 0.0 46.10 4.93 R
2790 2844 1.077716 GGGGGCAGCGTTGAGTATT 60.078 57.895 2.38 0.0 0.00 1.89 R
4330 4680 0.169451 TGCGTCTAACGAAGCGATGA 59.831 50.000 3.28 0.0 46.05 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 41 3.597255 AGGGCGAAAAAGTTAGTAGCTC 58.403 45.455 0.00 0.00 0.00 4.09
45 47 5.159209 CGAAAAAGTTAGTAGCTCGGAAGA 58.841 41.667 0.00 0.00 39.12 2.87
52 54 7.407393 AGTTAGTAGCTCGGAAGATTAGTTT 57.593 36.000 0.00 0.00 40.84 2.66
129 131 3.138304 CGATTTGGACTGAAGAACACCA 58.862 45.455 0.00 0.00 0.00 4.17
148 150 6.061441 ACACCATGTGTTTCATCTCTGTTTA 58.939 36.000 0.00 0.00 45.08 2.01
171 173 4.237349 GGGAATAATACCCAAACGCATG 57.763 45.455 0.00 0.00 46.05 4.06
188 190 6.096673 ACGCATGTGTATGATTGGAGTATA 57.903 37.500 10.90 0.00 36.36 1.47
278 280 6.599437 GCCTAATCGCATGATTAACGTTAAT 58.401 36.000 28.85 28.85 44.35 1.40
551 576 1.009675 CACAACGCTTGGTGCAGAC 60.010 57.895 0.00 0.00 43.06 3.51
552 577 1.451207 ACAACGCTTGGTGCAGACA 60.451 52.632 0.00 0.00 43.06 3.41
553 578 1.029408 ACAACGCTTGGTGCAGACAA 61.029 50.000 3.96 3.96 43.06 3.18
554 579 0.317269 CAACGCTTGGTGCAGACAAG 60.317 55.000 21.06 21.06 46.15 3.16
596 621 3.872728 CGACGATCGAGCGGTGGA 61.873 66.667 28.05 0.72 43.74 4.02
597 622 2.278013 GACGATCGAGCGGTGGAC 60.278 66.667 28.05 9.12 35.12 4.02
674 699 2.652095 GGACAACCGATCCCGTCCA 61.652 63.158 10.91 0.00 45.96 4.02
908 934 1.268899 ACGTACCAGGTCAAGAACTCG 59.731 52.381 0.00 0.00 0.00 4.18
930 961 0.819259 AACAACGCTGCACATCCAGT 60.819 50.000 0.00 0.00 35.28 4.00
931 962 0.034756 ACAACGCTGCACATCCAGTA 59.965 50.000 0.00 0.00 35.28 2.74
932 963 1.339055 ACAACGCTGCACATCCAGTAT 60.339 47.619 0.00 0.00 35.28 2.12
933 964 2.093711 ACAACGCTGCACATCCAGTATA 60.094 45.455 0.00 0.00 35.28 1.47
934 965 2.515926 ACGCTGCACATCCAGTATAG 57.484 50.000 0.00 0.00 35.28 1.31
935 966 1.143305 CGCTGCACATCCAGTATAGC 58.857 55.000 0.00 0.00 35.92 2.97
936 967 1.538849 CGCTGCACATCCAGTATAGCA 60.539 52.381 0.00 0.00 37.90 3.49
937 968 1.869767 GCTGCACATCCAGTATAGCAC 59.130 52.381 0.00 0.00 37.92 4.40
938 969 2.484417 GCTGCACATCCAGTATAGCACT 60.484 50.000 0.00 0.00 37.92 4.40
994 1025 0.534412 CCTGCTCGATCTTGGACACT 59.466 55.000 0.00 0.00 0.00 3.55
2046 2077 4.353437 GTCAACGTCGCCGGGAGT 62.353 66.667 2.18 0.00 38.78 3.85
2062 2093 1.816863 GAGTCCAAGGCTCGGTGACA 61.817 60.000 0.00 0.00 0.00 3.58
2374 2405 1.410517 GCCTCCTCGACAAGATCATCA 59.589 52.381 0.00 0.00 0.00 3.07
2553 2589 3.121030 GTCAGCAACATCCGCGCT 61.121 61.111 5.56 0.00 36.10 5.92
2556 2592 2.100031 CAGCAACATCCGCGCTGTA 61.100 57.895 5.56 0.00 46.36 2.74
2658 2700 2.351244 TGAGAAGATCGGCGGCACT 61.351 57.895 10.53 1.82 0.00 4.40
2809 2863 1.847798 AATACTCAACGCTGCCCCCA 61.848 55.000 0.00 0.00 0.00 4.96
2823 2877 3.980989 CCCACCGTTGTCGACCGA 61.981 66.667 14.12 0.00 39.71 4.69
3032 3086 2.827642 GGCAGTGAGGCTCATGGC 60.828 66.667 25.93 25.93 40.24 4.40
3186 3240 1.005156 GCTCCTGATCGGGATGCTC 60.005 63.158 23.80 9.66 34.56 4.26
3528 3589 0.537188 AACCGGCTATGTCTGAGTGG 59.463 55.000 0.00 0.00 0.00 4.00
3530 3591 1.589993 CGGCTATGTCTGAGTGGCG 60.590 63.158 0.00 0.00 39.98 5.69
3534 3595 2.194271 GCTATGTCTGAGTGGCGTAAC 58.806 52.381 0.00 0.00 0.00 2.50
3536 3597 2.080286 ATGTCTGAGTGGCGTAACAC 57.920 50.000 0.00 0.00 41.63 3.32
3545 3606 3.054878 AGTGGCGTAACACGTAAGAAAG 58.945 45.455 0.26 0.00 45.80 2.62
3584 3646 7.177216 TGAAAAATAAGAATGTGCACAGATCCT 59.823 33.333 25.84 16.88 0.00 3.24
3616 3678 5.547181 TCTCACGAATATAGTATCGGCTG 57.453 43.478 9.34 0.00 43.11 4.85
3625 3687 9.814507 CGAATATAGTATCGGCTGAGATATAAC 57.185 37.037 0.00 2.87 35.78 1.89
3651 3713 7.583860 AAATCTAAGTCGACTGAGTTTTAGC 57.416 36.000 27.10 0.00 38.66 3.09
3658 3720 5.241064 AGTCGACTGAGTTTTAGCAAGACTA 59.759 40.000 19.30 0.00 34.05 2.59
3731 3797 1.625616 CTTTACTCCACCGTGTAGCG 58.374 55.000 0.00 0.00 40.95 4.26
3746 3812 4.205181 CGTGTAGCGTCATATTCTGTCTTG 59.795 45.833 0.00 0.00 35.54 3.02
3747 3813 4.026475 GTGTAGCGTCATATTCTGTCTTGC 60.026 45.833 0.00 0.00 0.00 4.01
3806 3872 4.857130 GGTTAAGACCCCCAGAGTTATT 57.143 45.455 0.00 0.00 40.25 1.40
3808 3874 6.317663 GGTTAAGACCCCCAGAGTTATTAA 57.682 41.667 0.00 0.00 40.25 1.40
3809 3875 6.724351 GGTTAAGACCCCCAGAGTTATTAAA 58.276 40.000 0.00 0.00 40.25 1.52
3810 3876 7.177184 GGTTAAGACCCCCAGAGTTATTAAAA 58.823 38.462 0.00 0.00 40.25 1.52
3812 3878 5.853572 AGACCCCCAGAGTTATTAAAACA 57.146 39.130 4.21 0.00 0.00 2.83
3813 3879 6.402981 AGACCCCCAGAGTTATTAAAACAT 57.597 37.500 4.21 0.00 0.00 2.71
3814 3880 6.800890 AGACCCCCAGAGTTATTAAAACATT 58.199 36.000 4.21 0.00 0.00 2.71
3815 3881 7.935405 AGACCCCCAGAGTTATTAAAACATTA 58.065 34.615 4.21 0.00 0.00 1.90
3817 3883 9.197306 GACCCCCAGAGTTATTAAAACATTAAT 57.803 33.333 0.18 0.18 0.00 1.40
3844 3910 8.934023 TGGTTGGTTATCAAGAAAAGTATTCT 57.066 30.769 0.00 0.00 35.80 2.40
4233 4575 3.057596 TGCTTTAATGTTTGGCTTCGAGG 60.058 43.478 0.00 0.00 0.00 4.63
4236 4578 1.534729 AATGTTTGGCTTCGAGGGAC 58.465 50.000 0.00 0.00 0.00 4.46
4238 4580 0.250295 TGTTTGGCTTCGAGGGACTG 60.250 55.000 0.00 0.00 41.55 3.51
4276 4624 7.872483 AGAATGGGTTTTTATCATTTGTGTCAC 59.128 33.333 0.00 0.00 32.05 3.67
4319 4667 7.678837 TCAGTTTTGCCATTAGGAATTTCAAT 58.321 30.769 0.00 0.00 36.89 2.57
4337 4687 4.445453 TCAATTGCTAAGATGTCATCGCT 58.555 39.130 7.18 1.90 0.00 4.93
4347 4697 1.891178 TGTCATCGCTTCGTTAGACG 58.109 50.000 0.00 0.00 44.19 4.18
4354 4704 0.299003 GCTTCGTTAGACGCATGCTC 59.701 55.000 17.13 12.16 42.21 4.26
4364 4714 0.317799 ACGCATGCTCAAAAATGCCA 59.682 45.000 17.13 0.00 45.13 4.92
4365 4715 1.066716 ACGCATGCTCAAAAATGCCAT 60.067 42.857 17.13 0.00 45.13 4.40
4366 4716 2.004017 CGCATGCTCAAAAATGCCATT 58.996 42.857 17.13 0.00 45.13 3.16
4369 4719 3.601435 CATGCTCAAAAATGCCATTGGA 58.399 40.909 6.95 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 5.585820 ACTAACTTTTTCGCCCTTTTTGA 57.414 34.783 0.00 0.00 0.00 2.69
39 41 4.243270 ACTCCGACAAAACTAATCTTCCG 58.757 43.478 0.00 0.00 0.00 4.30
52 54 7.185318 TCCTTGGTAATTATTACTCCGACAA 57.815 36.000 13.86 8.65 36.39 3.18
70 72 6.152831 TGGATCTATGTCGTATACATCCTTGG 59.847 42.308 14.07 0.00 46.15 3.61
129 131 5.014123 TCCCCTAAACAGAGATGAAACACAT 59.986 40.000 0.00 0.00 42.47 3.21
148 150 2.242708 TGCGTTTGGGTATTATTCCCCT 59.757 45.455 4.42 0.00 44.00 4.79
164 166 3.609853 ACTCCAATCATACACATGCGTT 58.390 40.909 0.00 0.00 31.73 4.84
171 173 7.710907 ACACACACATATACTCCAATCATACAC 59.289 37.037 0.00 0.00 0.00 2.90
188 190 3.966215 GGCACGCTACACACACAT 58.034 55.556 0.00 0.00 0.00 3.21
253 255 2.475111 ACGTTAATCATGCGATTAGGCG 59.525 45.455 14.14 14.14 43.34 5.52
278 280 2.681848 GCGTAAGGAGTGCAGTACTAGA 59.318 50.000 6.73 0.00 37.58 2.43
496 521 3.498397 AGCGGCCTAATTTGAATCATACG 59.502 43.478 0.00 0.00 0.00 3.06
547 572 1.767289 CTTGCTTGCTTGCTTGTCTG 58.233 50.000 3.47 0.00 0.00 3.51
549 574 0.249155 TGCTTGCTTGCTTGCTTGTC 60.249 50.000 10.35 0.00 0.00 3.18
551 576 0.859232 CTTGCTTGCTTGCTTGCTTG 59.141 50.000 10.35 0.00 0.00 4.01
552 577 0.878961 GCTTGCTTGCTTGCTTGCTT 60.879 50.000 10.35 0.00 0.00 3.91
553 578 1.300697 GCTTGCTTGCTTGCTTGCT 60.301 52.632 10.35 0.00 0.00 3.91
554 579 1.155424 TTGCTTGCTTGCTTGCTTGC 61.155 50.000 10.35 7.41 34.50 4.01
659 684 1.227556 GGATGGACGGGATCGGTTG 60.228 63.158 0.00 0.00 41.39 3.77
674 699 2.217038 CGGATGGGACGGGATGGAT 61.217 63.158 0.00 0.00 0.00 3.41
747 772 0.985490 AGGCAAGGGAGGATCAGGAC 60.985 60.000 0.00 0.00 36.25 3.85
908 934 0.166814 GGATGTGCAGCGTTGTTCTC 59.833 55.000 0.00 0.00 0.00 2.87
935 966 5.472478 ACTGGATCAATGCAATGCTATAGTG 59.528 40.000 6.82 0.00 0.00 2.74
936 967 5.472478 CACTGGATCAATGCAATGCTATAGT 59.528 40.000 6.82 0.00 0.00 2.12
937 968 5.472478 ACACTGGATCAATGCAATGCTATAG 59.528 40.000 6.82 0.00 28.04 1.31
938 969 5.239963 CACACTGGATCAATGCAATGCTATA 59.760 40.000 6.82 0.00 28.04 1.31
994 1025 4.585526 GCCGCCGTCCATCGATCA 62.586 66.667 0.00 0.00 42.86 2.92
1540 1571 1.808945 CGAGGCATCCATATTCTTGGC 59.191 52.381 0.00 0.00 36.66 4.52
1798 1829 0.911525 CTCACCTCCCACTCCCACAT 60.912 60.000 0.00 0.00 0.00 3.21
1890 1921 0.450583 ATGCGTCGTAGAAGAAGCGA 59.549 50.000 0.00 0.00 46.10 4.93
2046 2077 2.741092 GTGTCACCGAGCCTTGGA 59.259 61.111 4.57 0.00 0.00 3.53
2091 2122 3.397439 AGCCGCTCCATGACTGCT 61.397 61.111 0.00 0.00 0.00 4.24
2262 2293 3.303135 TTGCACTCCTCGTCCGCT 61.303 61.111 0.00 0.00 0.00 5.52
2374 2405 1.448540 CGCCGATGCTGGAGAAGTT 60.449 57.895 0.00 0.00 34.43 2.66
2658 2700 1.216444 GAGCGAGATGACACTGCCA 59.784 57.895 0.00 0.00 0.00 4.92
2790 2844 1.077716 GGGGGCAGCGTTGAGTATT 60.078 57.895 2.38 0.00 0.00 1.89
2809 2863 2.641559 GAGTCGGTCGACAACGGT 59.358 61.111 22.81 3.97 46.76 4.83
2823 2877 3.753434 CTCAGCGCCTCCACGAGT 61.753 66.667 2.29 0.00 34.06 4.18
3186 3240 0.523546 CGAACGACGAGTCCATCCTG 60.524 60.000 0.00 0.00 45.77 3.86
3612 3674 9.562583 CGACTTAGATTTAGTTATATCTCAGCC 57.437 37.037 0.00 0.00 33.38 4.85
3625 3687 8.800031 GCTAAAACTCAGTCGACTTAGATTTAG 58.200 37.037 35.95 35.95 41.00 1.85
3626 3688 8.301720 TGCTAAAACTCAGTCGACTTAGATTTA 58.698 33.333 28.81 27.69 29.23 1.40
3703 3769 3.118149 ACGGTGGAGTAAAGGAAAACTGT 60.118 43.478 0.00 0.00 0.00 3.55
3706 3772 3.208594 ACACGGTGGAGTAAAGGAAAAC 58.791 45.455 13.48 0.00 0.00 2.43
3711 3777 1.734707 CGCTACACGGTGGAGTAAAGG 60.735 57.143 20.95 3.22 38.44 3.11
3746 3812 3.359950 AGGACATTTCCCTCAAATCTGC 58.640 45.455 0.00 0.00 44.10 4.26
3747 3813 8.213679 TCTATTAGGACATTTCCCTCAAATCTG 58.786 37.037 0.00 0.00 44.10 2.90
3757 3823 9.793259 TCCACATAAATCTATTAGGACATTTCC 57.207 33.333 0.00 0.00 43.22 3.13
3818 3884 9.533831 AGAATACTTTTCTTGATAACCAACCAT 57.466 29.630 0.00 0.00 0.00 3.55
3819 3885 8.934023 AGAATACTTTTCTTGATAACCAACCA 57.066 30.769 0.00 0.00 0.00 3.67
3828 3894 9.981460 ATCCTTGGTTAGAATACTTTTCTTGAT 57.019 29.630 0.00 0.00 0.00 2.57
3834 3900 9.892130 CAGAGTATCCTTGGTTAGAATACTTTT 57.108 33.333 0.00 0.00 33.66 2.27
3835 3901 9.047947 ACAGAGTATCCTTGGTTAGAATACTTT 57.952 33.333 0.00 0.00 33.66 2.66
3836 3902 8.611051 ACAGAGTATCCTTGGTTAGAATACTT 57.389 34.615 0.00 0.00 33.66 2.24
3837 3903 8.611051 AACAGAGTATCCTTGGTTAGAATACT 57.389 34.615 0.00 0.00 33.66 2.12
3838 3904 9.747293 GTAACAGAGTATCCTTGGTTAGAATAC 57.253 37.037 0.00 0.00 33.66 1.89
3839 3905 8.627403 CGTAACAGAGTATCCTTGGTTAGAATA 58.373 37.037 0.00 0.00 33.66 1.75
3841 3907 6.435277 ACGTAACAGAGTATCCTTGGTTAGAA 59.565 38.462 0.00 0.00 33.66 2.10
3842 3908 5.948162 ACGTAACAGAGTATCCTTGGTTAGA 59.052 40.000 0.00 0.00 33.66 2.10
4276 4624 6.777213 AACTGAGTAGTGGGACATAACTAG 57.223 41.667 0.00 0.00 44.52 2.57
4282 4630 3.412386 GCAAAACTGAGTAGTGGGACAT 58.588 45.455 0.00 0.00 44.52 3.06
4319 4667 2.860136 CGAAGCGATGACATCTTAGCAA 59.140 45.455 13.45 0.00 0.00 3.91
4330 4680 0.169451 TGCGTCTAACGAAGCGATGA 59.831 50.000 3.28 0.00 46.05 2.92
4337 4687 2.073117 TTGAGCATGCGTCTAACGAA 57.927 45.000 13.01 0.00 46.05 3.85
4347 4697 2.096819 CCAATGGCATTTTTGAGCATGC 59.903 45.455 10.51 10.51 44.39 4.06
4354 4704 3.123157 TGGTGTCCAATGGCATTTTTG 57.877 42.857 10.65 0.62 0.00 2.44
4364 4714 3.009473 AGCTGACAGTAATGGTGTCCAAT 59.991 43.478 3.99 0.00 43.19 3.16
4365 4715 2.371841 AGCTGACAGTAATGGTGTCCAA 59.628 45.455 3.99 0.00 43.19 3.53
4366 4716 1.977854 AGCTGACAGTAATGGTGTCCA 59.022 47.619 3.99 0.00 43.19 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.