Multiple sequence alignment - TraesCS5D01G110500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G110500 chr5D 100.000 3590 0 0 1 3590 125732167 125735756 0.000000e+00 6630.0
1 TraesCS5D01G110500 chr5D 91.195 159 14 0 2076 2234 541688164 541688006 2.170000e-52 217.0
2 TraesCS5D01G110500 chr5D 89.017 173 19 0 2072 2244 128579110 128579282 7.810000e-52 215.0
3 TraesCS5D01G110500 chr5D 94.231 104 3 2 3411 3511 125735473 125735576 4.800000e-34 156.0
4 TraesCS5D01G110500 chr5D 94.231 104 3 2 3307 3410 125735577 125735677 4.800000e-34 156.0
5 TraesCS5D01G110500 chr5B 95.350 2473 75 14 616 3088 138352855 138350423 0.000000e+00 3893.0
6 TraesCS5D01G110500 chr5B 93.056 216 12 1 3148 3363 138350347 138350135 2.690000e-81 313.0
7 TraesCS5D01G110500 chr5B 90.173 173 16 1 2072 2244 140967430 140967601 1.300000e-54 224.0
8 TraesCS5D01G110500 chr5B 82.873 181 17 5 3411 3590 138350188 138350021 2.230000e-32 150.0
9 TraesCS5D01G110500 chr5A 95.143 2409 83 9 682 3088 139686741 139684365 0.000000e+00 3770.0
10 TraesCS5D01G110500 chr5A 88.615 325 29 4 3092 3413 139684323 139684004 4.350000e-104 388.0
11 TraesCS5D01G110500 chr5A 90.608 181 13 3 3411 3588 139684109 139683930 1.670000e-58 237.0
12 TraesCS5D01G110500 chr4D 92.949 156 9 2 2079 2233 190474142 190473988 3.610000e-55 226.0
13 TraesCS5D01G110500 chr6B 91.026 156 14 0 2079 2234 53650690 53650535 1.010000e-50 211.0
14 TraesCS5D01G110500 chr6B 94.737 38 2 0 13 50 41737775 41737812 3.870000e-05 60.2
15 TraesCS5D01G110500 chr2D 90.566 159 15 0 2076 2234 331758787 331758945 1.010000e-50 211.0
16 TraesCS5D01G110500 chr7D 89.937 159 16 0 2076 2234 168433194 168433036 4.700000e-49 206.0
17 TraesCS5D01G110500 chr7D 94.595 37 2 0 14 50 124292526 124292562 1.390000e-04 58.4
18 TraesCS5D01G110500 chr7B 100.000 35 0 0 16 50 477426840 477426874 8.320000e-07 65.8
19 TraesCS5D01G110500 chr7B 94.595 37 0 2 14 50 595079122 595079088 5.010000e-04 56.5
20 TraesCS5D01G110500 chr4A 82.667 75 11 1 55 127 111170406 111170332 8.320000e-07 65.8
21 TraesCS5D01G110500 chr4A 92.683 41 3 0 12 52 29793443 29793403 3.870000e-05 60.2
22 TraesCS5D01G110500 chr4A 94.737 38 2 0 13 50 594600205 594600168 3.870000e-05 60.2
23 TraesCS5D01G110500 chr2B 97.368 38 1 0 13 50 25856805 25856842 8.320000e-07 65.8
24 TraesCS5D01G110500 chr3A 88.235 51 6 0 491 541 226463174 226463224 1.080000e-05 62.1
25 TraesCS5D01G110500 chr3A 97.059 34 1 0 49 82 737578489 737578456 1.390000e-04 58.4
26 TraesCS5D01G110500 chr1D 100.000 31 0 0 20 50 93089391 93089421 1.390000e-04 58.4
27 TraesCS5D01G110500 chr3D 94.595 37 1 1 22 58 554388190 554388225 5.010000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G110500 chr5D 125732167 125735756 3589 False 2314 6630 96.154000 1 3590 3 chr5D.!!$F2 3589
1 TraesCS5D01G110500 chr5B 138350021 138352855 2834 True 1452 3893 90.426333 616 3590 3 chr5B.!!$R1 2974
2 TraesCS5D01G110500 chr5A 139683930 139686741 2811 True 1465 3770 91.455333 682 3588 3 chr5A.!!$R1 2906

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
528 529 0.038744 CAGGCCAGACCCAACAAGAT 59.961 55.0 5.01 0.0 40.58 2.4 F
1610 1633 0.106819 ATGATGGCAGAGTTGGAGGC 60.107 55.0 0.00 0.0 0.00 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1902 1925 1.133853 AGCTCCCTCTTCATTGCCATC 60.134 52.381 0.0 0.0 0.00 3.51 R
3433 3496 0.042581 TCCCAGGAGGATGCAGTACA 59.957 55.000 0.0 0.0 40.93 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 3.339464 CGTTACAACGCACGGGCA 61.339 61.111 11.77 0.00 46.06 5.36
40 41 2.673114 CGTTACAACGCACGGGCAT 61.673 57.895 11.77 0.00 46.06 4.40
41 42 1.352882 CGTTACAACGCACGGGCATA 61.353 55.000 11.77 0.00 46.06 3.14
42 43 1.011333 GTTACAACGCACGGGCATAT 58.989 50.000 11.77 0.00 41.24 1.78
43 44 1.010580 TTACAACGCACGGGCATATG 58.989 50.000 11.77 7.71 41.24 1.78
44 45 0.108089 TACAACGCACGGGCATATGT 60.108 50.000 11.77 13.84 41.24 2.29
45 46 1.062365 CAACGCACGGGCATATGTG 59.938 57.895 11.77 0.00 41.24 3.21
106 107 9.469807 TTTTGTACACACATTTAACATCATTCC 57.530 29.630 0.00 0.00 33.76 3.01
107 108 6.836953 TGTACACACATTTAACATCATTCCG 58.163 36.000 0.00 0.00 0.00 4.30
108 109 6.651225 TGTACACACATTTAACATCATTCCGA 59.349 34.615 0.00 0.00 0.00 4.55
109 110 6.757897 ACACACATTTAACATCATTCCGAT 57.242 33.333 0.00 0.00 33.27 4.18
121 122 6.063640 CATCATTCCGATGCTTGATTAACA 57.936 37.500 0.00 0.00 44.95 2.41
122 123 6.675026 CATCATTCCGATGCTTGATTAACAT 58.325 36.000 0.00 0.00 44.95 2.71
123 124 6.698008 TCATTCCGATGCTTGATTAACATT 57.302 33.333 0.00 0.00 33.14 2.71
124 125 7.099266 TCATTCCGATGCTTGATTAACATTT 57.901 32.000 0.00 0.00 33.14 2.32
125 126 7.546358 TCATTCCGATGCTTGATTAACATTTT 58.454 30.769 0.00 0.00 33.14 1.82
126 127 8.034215 TCATTCCGATGCTTGATTAACATTTTT 58.966 29.630 0.00 0.00 33.14 1.94
162 163 9.958234 TTTCAAATACTCGATTGTCATTTTTGA 57.042 25.926 0.00 0.00 0.00 2.69
163 164 9.958234 TTCAAATACTCGATTGTCATTTTTGAA 57.042 25.926 0.00 0.00 37.88 2.69
164 165 9.958234 TCAAATACTCGATTGTCATTTTTGAAA 57.042 25.926 0.00 0.00 30.23 2.69
169 170 8.456904 ACTCGATTGTCATTTTTGAAATGATG 57.543 30.769 16.41 4.45 38.71 3.07
170 171 8.298854 ACTCGATTGTCATTTTTGAAATGATGA 58.701 29.630 16.41 10.21 38.71 2.92
171 172 9.297586 CTCGATTGTCATTTTTGAAATGATGAT 57.702 29.630 16.41 13.42 38.71 2.45
172 173 9.642327 TCGATTGTCATTTTTGAAATGATGATT 57.358 25.926 16.41 5.53 38.71 2.57
280 281 9.936759 TGTATACATGACAAACATCAACTCTAA 57.063 29.630 0.08 0.00 37.07 2.10
284 285 8.311650 ACATGACAAACATCAACTCTAAGTAC 57.688 34.615 0.00 0.00 37.07 2.73
285 286 7.931407 ACATGACAAACATCAACTCTAAGTACA 59.069 33.333 0.00 0.00 37.07 2.90
286 287 8.939929 CATGACAAACATCAACTCTAAGTACAT 58.060 33.333 0.00 0.00 37.07 2.29
287 288 8.902540 TGACAAACATCAACTCTAAGTACATT 57.097 30.769 0.00 0.00 0.00 2.71
288 289 9.337396 TGACAAACATCAACTCTAAGTACATTT 57.663 29.630 0.00 0.00 0.00 2.32
452 453 4.569180 CCACTAGGCCGGCCCATG 62.569 72.222 41.72 33.13 36.58 3.66
464 465 4.776322 CCCATGCGCTCCCGTGAA 62.776 66.667 9.73 0.00 36.67 3.18
465 466 2.745884 CCATGCGCTCCCGTGAAA 60.746 61.111 9.73 0.00 36.67 2.69
466 467 2.480555 CATGCGCTCCCGTGAAAC 59.519 61.111 9.73 0.00 36.67 2.78
467 468 2.746277 ATGCGCTCCCGTGAAACC 60.746 61.111 9.73 0.00 36.67 3.27
469 470 4.699522 GCGCTCCCGTGAAACCCT 62.700 66.667 0.00 0.00 36.67 4.34
470 471 2.434359 CGCTCCCGTGAAACCCTC 60.434 66.667 0.00 0.00 0.00 4.30
471 472 2.046217 GCTCCCGTGAAACCCTCC 60.046 66.667 0.00 0.00 0.00 4.30
472 473 2.890766 GCTCCCGTGAAACCCTCCA 61.891 63.158 0.00 0.00 0.00 3.86
473 474 1.003718 CTCCCGTGAAACCCTCCAC 60.004 63.158 0.00 0.00 0.00 4.02
474 475 1.460689 TCCCGTGAAACCCTCCACT 60.461 57.895 0.00 0.00 0.00 4.00
475 476 1.057851 TCCCGTGAAACCCTCCACTT 61.058 55.000 0.00 0.00 0.00 3.16
476 477 0.179001 CCCGTGAAACCCTCCACTTT 60.179 55.000 0.00 0.00 0.00 2.66
477 478 1.235724 CCGTGAAACCCTCCACTTTC 58.764 55.000 0.00 0.00 0.00 2.62
478 479 1.202770 CCGTGAAACCCTCCACTTTCT 60.203 52.381 0.00 0.00 0.00 2.52
479 480 2.572290 CGTGAAACCCTCCACTTTCTT 58.428 47.619 0.00 0.00 0.00 2.52
480 481 2.949644 CGTGAAACCCTCCACTTTCTTT 59.050 45.455 0.00 0.00 0.00 2.52
481 482 3.380320 CGTGAAACCCTCCACTTTCTTTT 59.620 43.478 0.00 0.00 0.00 2.27
482 483 4.682787 GTGAAACCCTCCACTTTCTTTTG 58.317 43.478 0.00 0.00 0.00 2.44
483 484 4.401202 GTGAAACCCTCCACTTTCTTTTGA 59.599 41.667 0.00 0.00 0.00 2.69
484 485 4.644685 TGAAACCCTCCACTTTCTTTTGAG 59.355 41.667 0.00 0.00 0.00 3.02
485 486 3.229697 ACCCTCCACTTTCTTTTGAGG 57.770 47.619 0.00 0.00 41.84 3.86
487 488 2.519013 CCTCCACTTTCTTTTGAGGGG 58.481 52.381 0.00 0.00 39.14 4.79
488 489 2.158460 CCTCCACTTTCTTTTGAGGGGT 60.158 50.000 0.00 0.00 39.14 4.95
489 490 3.566351 CTCCACTTTCTTTTGAGGGGTT 58.434 45.455 0.00 0.00 0.00 4.11
490 491 3.960755 CTCCACTTTCTTTTGAGGGGTTT 59.039 43.478 0.00 0.00 0.00 3.27
491 492 4.358214 TCCACTTTCTTTTGAGGGGTTTT 58.642 39.130 0.00 0.00 0.00 2.43
492 493 4.161377 TCCACTTTCTTTTGAGGGGTTTTG 59.839 41.667 0.00 0.00 0.00 2.44
493 494 4.441792 CACTTTCTTTTGAGGGGTTTTGG 58.558 43.478 0.00 0.00 0.00 3.28
494 495 3.454447 ACTTTCTTTTGAGGGGTTTTGGG 59.546 43.478 0.00 0.00 0.00 4.12
495 496 2.858787 TCTTTTGAGGGGTTTTGGGT 57.141 45.000 0.00 0.00 0.00 4.51
496 497 3.975479 TCTTTTGAGGGGTTTTGGGTA 57.025 42.857 0.00 0.00 0.00 3.69
497 498 3.568443 TCTTTTGAGGGGTTTTGGGTAC 58.432 45.455 0.00 0.00 0.00 3.34
509 510 2.046604 GGGTACCGTCAAGTGGGC 60.047 66.667 5.65 0.00 40.86 5.36
510 511 2.745037 GGTACCGTCAAGTGGGCA 59.255 61.111 0.00 0.00 0.00 5.36
511 512 1.375523 GGTACCGTCAAGTGGGCAG 60.376 63.158 0.00 0.00 0.00 4.85
512 513 1.375523 GTACCGTCAAGTGGGCAGG 60.376 63.158 0.00 0.00 0.00 4.85
513 514 3.248446 TACCGTCAAGTGGGCAGGC 62.248 63.158 0.00 0.00 0.00 4.85
515 516 4.641645 CGTCAAGTGGGCAGGCCA 62.642 66.667 12.83 12.83 37.98 5.36
516 517 2.674380 GTCAAGTGGGCAGGCCAG 60.674 66.667 17.99 5.02 37.98 4.85
517 518 2.853542 TCAAGTGGGCAGGCCAGA 60.854 61.111 17.99 7.73 37.98 3.86
518 519 2.674380 CAAGTGGGCAGGCCAGAC 60.674 66.667 17.99 5.63 37.98 3.51
519 520 3.971702 AAGTGGGCAGGCCAGACC 61.972 66.667 17.99 14.57 37.98 3.85
524 525 4.284550 GGCAGGCCAGACCCAACA 62.285 66.667 5.01 0.00 40.58 3.33
525 526 2.203480 GCAGGCCAGACCCAACAA 60.203 61.111 5.01 0.00 40.58 2.83
526 527 2.270986 GCAGGCCAGACCCAACAAG 61.271 63.158 5.01 0.00 40.58 3.16
527 528 1.455849 CAGGCCAGACCCAACAAGA 59.544 57.895 5.01 0.00 40.58 3.02
528 529 0.038744 CAGGCCAGACCCAACAAGAT 59.961 55.000 5.01 0.00 40.58 2.40
529 530 1.281867 CAGGCCAGACCCAACAAGATA 59.718 52.381 5.01 0.00 40.58 1.98
530 531 1.992557 AGGCCAGACCCAACAAGATAA 59.007 47.619 5.01 0.00 40.58 1.75
531 532 2.582636 AGGCCAGACCCAACAAGATAAT 59.417 45.455 5.01 0.00 40.58 1.28
532 533 3.011708 AGGCCAGACCCAACAAGATAATT 59.988 43.478 5.01 0.00 40.58 1.40
533 534 3.131046 GGCCAGACCCAACAAGATAATTG 59.869 47.826 0.00 0.00 0.00 2.32
534 535 3.131046 GCCAGACCCAACAAGATAATTGG 59.869 47.826 0.00 0.00 44.31 3.16
544 545 5.511234 ACAAGATAATTGGAATCTGCAGC 57.489 39.130 9.47 0.00 33.95 5.25
545 546 4.340381 ACAAGATAATTGGAATCTGCAGCC 59.660 41.667 9.47 5.26 33.95 4.85
546 547 4.450305 AGATAATTGGAATCTGCAGCCT 57.550 40.909 9.47 0.00 32.44 4.58
547 548 5.573380 AGATAATTGGAATCTGCAGCCTA 57.427 39.130 9.47 1.83 32.44 3.93
548 549 6.137104 AGATAATTGGAATCTGCAGCCTAT 57.863 37.500 9.47 4.39 32.44 2.57
549 550 7.262990 AGATAATTGGAATCTGCAGCCTATA 57.737 36.000 9.47 0.00 32.44 1.31
550 551 7.870027 AGATAATTGGAATCTGCAGCCTATAT 58.130 34.615 9.47 5.32 32.44 0.86
551 552 7.774157 AGATAATTGGAATCTGCAGCCTATATG 59.226 37.037 9.47 0.00 32.44 1.78
552 553 4.980339 TTGGAATCTGCAGCCTATATGA 57.020 40.909 9.47 0.00 0.00 2.15
553 554 5.509832 TTGGAATCTGCAGCCTATATGAT 57.490 39.130 9.47 0.00 0.00 2.45
554 555 5.509832 TGGAATCTGCAGCCTATATGATT 57.490 39.130 9.47 0.55 0.00 2.57
555 556 6.625532 TGGAATCTGCAGCCTATATGATTA 57.374 37.500 9.47 0.00 0.00 1.75
556 557 7.019656 TGGAATCTGCAGCCTATATGATTAA 57.980 36.000 9.47 0.00 0.00 1.40
557 558 7.460910 TGGAATCTGCAGCCTATATGATTAAA 58.539 34.615 9.47 0.00 0.00 1.52
558 559 8.111545 TGGAATCTGCAGCCTATATGATTAAAT 58.888 33.333 9.47 0.00 0.00 1.40
559 560 8.619546 GGAATCTGCAGCCTATATGATTAAATC 58.380 37.037 9.47 0.00 0.00 2.17
560 561 7.783090 ATCTGCAGCCTATATGATTAAATCG 57.217 36.000 9.47 0.00 0.00 3.34
561 562 5.582269 TCTGCAGCCTATATGATTAAATCGC 59.418 40.000 9.47 0.00 0.00 4.58
562 563 4.635765 TGCAGCCTATATGATTAAATCGCC 59.364 41.667 0.00 0.00 0.00 5.54
563 564 4.878397 GCAGCCTATATGATTAAATCGCCT 59.122 41.667 0.00 0.00 0.00 5.52
564 565 6.049149 GCAGCCTATATGATTAAATCGCCTA 58.951 40.000 0.00 0.00 0.00 3.93
565 566 6.538742 GCAGCCTATATGATTAAATCGCCTAA 59.461 38.462 0.00 0.00 0.00 2.69
566 567 7.065803 GCAGCCTATATGATTAAATCGCCTAAA 59.934 37.037 0.00 0.00 0.00 1.85
567 568 9.113838 CAGCCTATATGATTAAATCGCCTAAAT 57.886 33.333 0.00 0.00 0.00 1.40
568 569 9.331282 AGCCTATATGATTAAATCGCCTAAATC 57.669 33.333 0.00 0.00 0.00 2.17
569 570 9.331282 GCCTATATGATTAAATCGCCTAAATCT 57.669 33.333 0.00 0.00 31.16 2.40
575 576 8.149973 TGATTAAATCGCCTAAATCTAACACC 57.850 34.615 0.00 0.00 31.16 4.16
576 577 6.930667 TTAAATCGCCTAAATCTAACACCC 57.069 37.500 0.00 0.00 0.00 4.61
577 578 4.497291 AATCGCCTAAATCTAACACCCA 57.503 40.909 0.00 0.00 0.00 4.51
578 579 4.706842 ATCGCCTAAATCTAACACCCAT 57.293 40.909 0.00 0.00 0.00 4.00
579 580 4.497291 TCGCCTAAATCTAACACCCATT 57.503 40.909 0.00 0.00 0.00 3.16
580 581 4.850680 TCGCCTAAATCTAACACCCATTT 58.149 39.130 0.00 0.00 0.00 2.32
581 582 4.879545 TCGCCTAAATCTAACACCCATTTC 59.120 41.667 0.00 0.00 0.00 2.17
582 583 4.036380 CGCCTAAATCTAACACCCATTTCC 59.964 45.833 0.00 0.00 0.00 3.13
583 584 4.341235 GCCTAAATCTAACACCCATTTCCC 59.659 45.833 0.00 0.00 0.00 3.97
584 585 5.766590 CCTAAATCTAACACCCATTTCCCT 58.233 41.667 0.00 0.00 0.00 4.20
585 586 5.594317 CCTAAATCTAACACCCATTTCCCTG 59.406 44.000 0.00 0.00 0.00 4.45
586 587 3.669939 ATCTAACACCCATTTCCCTGG 57.330 47.619 0.00 0.00 35.95 4.45
603 604 4.297207 GGGACCTCCTATTCGGCT 57.703 61.111 0.00 0.00 35.95 5.52
604 605 3.452098 GGGACCTCCTATTCGGCTA 57.548 57.895 0.00 0.00 35.95 3.93
605 606 0.967662 GGGACCTCCTATTCGGCTAC 59.032 60.000 0.00 0.00 35.95 3.58
606 607 0.967662 GGACCTCCTATTCGGCTACC 59.032 60.000 0.00 0.00 0.00 3.18
607 608 1.480869 GGACCTCCTATTCGGCTACCT 60.481 57.143 0.00 0.00 0.00 3.08
608 609 1.614413 GACCTCCTATTCGGCTACCTG 59.386 57.143 0.00 0.00 0.00 4.00
609 610 1.063114 ACCTCCTATTCGGCTACCTGT 60.063 52.381 0.00 0.00 0.00 4.00
610 611 2.176364 ACCTCCTATTCGGCTACCTGTA 59.824 50.000 0.00 0.00 0.00 2.74
611 612 3.228453 CCTCCTATTCGGCTACCTGTAA 58.772 50.000 0.00 0.00 0.00 2.41
612 613 3.833070 CCTCCTATTCGGCTACCTGTAAT 59.167 47.826 0.00 0.00 0.00 1.89
613 614 4.082136 CCTCCTATTCGGCTACCTGTAATC 60.082 50.000 0.00 0.00 0.00 1.75
614 615 4.737578 TCCTATTCGGCTACCTGTAATCT 58.262 43.478 0.00 0.00 0.00 2.40
918 923 1.076632 AGCAAAACGGTGGACCCAA 60.077 52.632 0.00 0.00 0.00 4.12
1062 1085 2.353030 GGCAACGACAACGGCAAC 60.353 61.111 0.00 0.00 44.46 4.17
1063 1086 2.353030 GCAACGACAACGGCAACC 60.353 61.111 0.00 0.00 44.46 3.77
1064 1087 3.102985 CAACGACAACGGCAACCA 58.897 55.556 0.00 0.00 44.46 3.67
1065 1088 1.010125 CAACGACAACGGCAACCAG 60.010 57.895 0.00 0.00 44.46 4.00
1066 1089 2.184167 AACGACAACGGCAACCAGG 61.184 57.895 0.00 0.00 44.46 4.45
1067 1090 4.025401 CGACAACGGCAACCAGGC 62.025 66.667 0.00 0.00 39.93 4.85
1098 1121 1.590665 CAATGGCAATGGCAACGGA 59.409 52.632 14.81 0.00 42.43 4.69
1100 1123 0.683973 AATGGCAATGGCAACGGAAA 59.316 45.000 14.81 0.00 42.43 3.13
1569 1592 0.916086 AGGTGGCGTCCATATCCAAA 59.084 50.000 1.90 0.00 35.28 3.28
1610 1633 0.106819 ATGATGGCAGAGTTGGAGGC 60.107 55.000 0.00 0.00 0.00 4.70
1761 1784 3.782443 GAGGCGTTCCGGGTGGAT 61.782 66.667 0.00 0.00 45.91 3.41
1902 1925 1.141858 GGGGGATTAGAGGCTGAAGTG 59.858 57.143 0.00 0.00 0.00 3.16
1910 1933 1.284198 AGAGGCTGAAGTGATGGCAAT 59.716 47.619 0.00 0.00 0.00 3.56
1953 1976 4.151883 TGAAGGGCAAAAGTGATAAGCTT 58.848 39.130 3.48 3.48 0.00 3.74
2026 2049 1.198713 TGAGAGGCTCAGGATGGAAC 58.801 55.000 18.26 0.00 35.39 3.62
2100 2123 4.815269 AGAAGACTGAAATCGTGAAGGAG 58.185 43.478 0.00 0.00 0.00 3.69
2284 2307 0.736325 CAAGCATTCAAGCCTGCAGC 60.736 55.000 8.66 3.91 40.88 5.25
2349 2372 0.392193 AAGCAGGGAAGCTGATGTCG 60.392 55.000 0.00 0.00 45.89 4.35
2360 2383 3.942829 AGCTGATGTCGAAAATCAAGGA 58.057 40.909 11.88 0.00 33.76 3.36
2412 2435 4.161942 AGTGAGATTGGAGAGTTGAGGATG 59.838 45.833 0.00 0.00 0.00 3.51
2444 2467 4.944317 GGAAAAGAATGGGAAGATCGAAGT 59.056 41.667 0.00 0.00 0.00 3.01
2449 2472 4.226168 AGAATGGGAAGATCGAAGTCCTTT 59.774 41.667 11.02 6.60 0.00 3.11
2453 2476 3.307480 GGGAAGATCGAAGTCCTTTCCAA 60.307 47.826 11.02 0.00 36.34 3.53
2749 2772 7.832503 ATTTTTGCTTGCATTCTGGTAATAC 57.167 32.000 0.00 0.00 0.00 1.89
2844 2867 0.737219 GCTGTCAGGGCAAGCATTAG 59.263 55.000 1.14 0.00 0.00 1.73
2854 2877 3.245264 GGGCAAGCATTAGGGGTATATGT 60.245 47.826 0.00 0.00 0.00 2.29
2872 2895 2.582052 TGTGGATTTCCTGTTGGTGTC 58.418 47.619 0.00 0.00 36.82 3.67
2894 2917 4.754618 TCGTTTTATCATATCGGCTTGCAT 59.245 37.500 0.00 0.00 0.00 3.96
2941 2964 2.297701 ACAGTTGTTACTTGGCCAGTG 58.702 47.619 5.11 5.84 35.97 3.66
2955 2978 2.198827 CCAGTGCTGGGATGTGTTAA 57.801 50.000 10.28 0.00 46.81 2.01
2956 2979 2.086869 CCAGTGCTGGGATGTGTTAAG 58.913 52.381 10.28 0.00 46.81 1.85
2957 2980 2.553028 CCAGTGCTGGGATGTGTTAAGT 60.553 50.000 10.28 0.00 46.81 2.24
2958 2981 2.485426 CAGTGCTGGGATGTGTTAAGTG 59.515 50.000 0.00 0.00 0.00 3.16
2959 2982 2.106511 AGTGCTGGGATGTGTTAAGTGT 59.893 45.455 0.00 0.00 0.00 3.55
2960 2983 2.226437 GTGCTGGGATGTGTTAAGTGTG 59.774 50.000 0.00 0.00 0.00 3.82
2961 2984 1.200020 GCTGGGATGTGTTAAGTGTGC 59.800 52.381 0.00 0.00 0.00 4.57
2962 2985 2.503331 CTGGGATGTGTTAAGTGTGCA 58.497 47.619 0.00 0.00 0.00 4.57
2963 2986 2.884012 CTGGGATGTGTTAAGTGTGCAA 59.116 45.455 0.00 0.00 0.00 4.08
2964 2987 2.884012 TGGGATGTGTTAAGTGTGCAAG 59.116 45.455 0.00 0.00 0.00 4.01
2965 2988 3.146066 GGGATGTGTTAAGTGTGCAAGA 58.854 45.455 0.00 0.00 0.00 3.02
2966 2989 3.758554 GGGATGTGTTAAGTGTGCAAGAT 59.241 43.478 0.00 0.00 0.00 2.40
2967 2990 4.379813 GGGATGTGTTAAGTGTGCAAGATG 60.380 45.833 0.00 0.00 0.00 2.90
2968 2991 3.624326 TGTGTTAAGTGTGCAAGATGC 57.376 42.857 0.00 0.00 45.29 3.91
2969 2992 3.213506 TGTGTTAAGTGTGCAAGATGCT 58.786 40.909 3.78 0.00 45.31 3.79
2970 2993 3.631686 TGTGTTAAGTGTGCAAGATGCTT 59.368 39.130 3.78 0.00 45.31 3.91
2971 2994 4.097741 TGTGTTAAGTGTGCAAGATGCTTT 59.902 37.500 3.78 0.00 45.31 3.51
2972 2995 4.442073 GTGTTAAGTGTGCAAGATGCTTTG 59.558 41.667 3.78 0.00 45.31 2.77
2973 2996 4.097741 TGTTAAGTGTGCAAGATGCTTTGT 59.902 37.500 3.78 0.00 45.31 2.83
2974 2997 3.806625 AAGTGTGCAAGATGCTTTGTT 57.193 38.095 3.78 0.00 45.31 2.83
2975 2998 4.916983 AAGTGTGCAAGATGCTTTGTTA 57.083 36.364 3.78 0.00 45.31 2.41
2976 2999 5.458041 AAGTGTGCAAGATGCTTTGTTAT 57.542 34.783 3.78 0.00 45.31 1.89
2977 3000 6.573664 AAGTGTGCAAGATGCTTTGTTATA 57.426 33.333 3.78 0.00 45.31 0.98
2995 3018 7.476540 TGTTATAGACTTCTTCCAGTGCTTA 57.523 36.000 0.00 0.00 0.00 3.09
3088 3111 4.790444 GCATCATGAGCAAATATTCGTGCA 60.790 41.667 13.26 0.00 43.42 4.57
3090 3113 5.503662 TCATGAGCAAATATTCGTGCATT 57.496 34.783 13.26 0.00 43.42 3.56
3094 3156 6.392353 TGAGCAAATATTCGTGCATTTTTG 57.608 33.333 13.26 0.00 43.42 2.44
3116 3179 3.424433 GCACAGAAATGTAGTTGTACGGC 60.424 47.826 0.00 0.00 30.95 5.68
3117 3180 3.994392 CACAGAAATGTAGTTGTACGGCT 59.006 43.478 0.00 0.00 30.95 5.52
3121 3184 2.380084 ATGTAGTTGTACGGCTGTGG 57.620 50.000 8.92 0.00 30.95 4.17
3130 3193 4.514781 TGTACGGCTGTGGTGATATATC 57.485 45.455 8.92 5.73 0.00 1.63
3131 3194 3.892588 TGTACGGCTGTGGTGATATATCA 59.107 43.478 11.49 11.49 0.00 2.15
3162 3225 6.123651 TGTTTCCCATTGTAACAACTACTGT 58.876 36.000 0.00 0.00 41.27 3.55
3166 3229 8.749026 TTCCCATTGTAACAACTACTGTTTTA 57.251 30.769 0.00 0.00 46.49 1.52
3177 3240 5.031066 ACTACTGTTTTAGTTGTCCTGCA 57.969 39.130 0.00 0.00 40.59 4.41
3189 3252 1.542472 TGTCCTGCATTTGCTCATGTG 59.458 47.619 3.94 0.00 42.66 3.21
3201 3264 7.414429 GCATTTGCTCATGTGTGTAGAGAAATA 60.414 37.037 0.00 0.00 38.21 1.40
3213 3276 5.938125 GTGTAGAGAAATACAAAGAAGGGCA 59.062 40.000 0.00 0.00 37.41 5.36
3219 3282 7.163001 AGAAATACAAAGAAGGGCATTTCTC 57.837 36.000 4.29 0.00 37.93 2.87
3226 3289 2.108952 AGAAGGGCATTTCTCAACCACT 59.891 45.455 0.00 0.00 31.97 4.00
3228 3291 2.962859 AGGGCATTTCTCAACCACTTT 58.037 42.857 0.00 0.00 0.00 2.66
3302 3365 4.202151 ACAAAAGCACAAGGAATTGTCTCC 60.202 41.667 0.00 0.00 35.51 3.71
3314 3377 4.584743 GGAATTGTCTCCCTTTGAAGTGTT 59.415 41.667 0.00 0.00 0.00 3.32
3315 3378 5.768164 GGAATTGTCTCCCTTTGAAGTGTTA 59.232 40.000 0.00 0.00 0.00 2.41
3316 3379 6.294010 GGAATTGTCTCCCTTTGAAGTGTTAC 60.294 42.308 0.00 0.00 0.00 2.50
3337 3400 5.740290 ACTACATAGCACCAAGTTGTACT 57.260 39.130 1.45 0.00 0.00 2.73
3363 3426 1.191535 TCCTGGGATACGTTGAGGTG 58.808 55.000 0.00 0.00 37.60 4.00
3365 3428 1.137086 CCTGGGATACGTTGAGGTGAG 59.863 57.143 0.00 0.00 37.60 3.51
3366 3429 0.535335 TGGGATACGTTGAGGTGAGC 59.465 55.000 0.00 0.00 37.60 4.26
3367 3430 0.824759 GGGATACGTTGAGGTGAGCT 59.175 55.000 0.00 0.00 37.60 4.09
3368 3431 1.207329 GGGATACGTTGAGGTGAGCTT 59.793 52.381 0.00 0.00 37.60 3.74
3369 3432 2.354805 GGGATACGTTGAGGTGAGCTTT 60.355 50.000 0.00 0.00 37.60 3.51
3370 3433 2.673368 GGATACGTTGAGGTGAGCTTTG 59.327 50.000 0.00 0.00 0.00 2.77
3371 3434 2.163818 TACGTTGAGGTGAGCTTTGG 57.836 50.000 0.00 0.00 0.00 3.28
3372 3435 0.535102 ACGTTGAGGTGAGCTTTGGG 60.535 55.000 0.00 0.00 0.00 4.12
3373 3436 0.535102 CGTTGAGGTGAGCTTTGGGT 60.535 55.000 0.00 0.00 0.00 4.51
3374 3437 0.954452 GTTGAGGTGAGCTTTGGGTG 59.046 55.000 0.00 0.00 0.00 4.61
3375 3438 0.550914 TTGAGGTGAGCTTTGGGTGT 59.449 50.000 0.00 0.00 0.00 4.16
3376 3439 1.429930 TGAGGTGAGCTTTGGGTGTA 58.570 50.000 0.00 0.00 0.00 2.90
3377 3440 1.985159 TGAGGTGAGCTTTGGGTGTAT 59.015 47.619 0.00 0.00 0.00 2.29
3378 3441 2.375174 TGAGGTGAGCTTTGGGTGTATT 59.625 45.455 0.00 0.00 0.00 1.89
3379 3442 2.749621 GAGGTGAGCTTTGGGTGTATTG 59.250 50.000 0.00 0.00 0.00 1.90
3380 3443 1.202348 GGTGAGCTTTGGGTGTATTGC 59.798 52.381 0.00 0.00 0.00 3.56
3381 3444 1.885887 GTGAGCTTTGGGTGTATTGCA 59.114 47.619 0.00 0.00 0.00 4.08
3382 3445 2.493278 GTGAGCTTTGGGTGTATTGCAT 59.507 45.455 0.00 0.00 0.00 3.96
3383 3446 2.492881 TGAGCTTTGGGTGTATTGCATG 59.507 45.455 0.00 0.00 0.00 4.06
3384 3447 2.754552 GAGCTTTGGGTGTATTGCATGA 59.245 45.455 0.00 0.00 0.00 3.07
3385 3448 2.756760 AGCTTTGGGTGTATTGCATGAG 59.243 45.455 0.00 0.00 0.00 2.90
3386 3449 2.493278 GCTTTGGGTGTATTGCATGAGT 59.507 45.455 0.00 0.00 0.00 3.41
3387 3450 3.674138 GCTTTGGGTGTATTGCATGAGTG 60.674 47.826 0.00 0.00 0.00 3.51
3388 3451 2.877097 TGGGTGTATTGCATGAGTGT 57.123 45.000 0.00 0.00 0.00 3.55
3389 3452 3.153369 TGGGTGTATTGCATGAGTGTT 57.847 42.857 0.00 0.00 0.00 3.32
3390 3453 2.819019 TGGGTGTATTGCATGAGTGTTG 59.181 45.455 0.00 0.00 0.00 3.33
3391 3454 3.081061 GGGTGTATTGCATGAGTGTTGA 58.919 45.455 0.00 0.00 0.00 3.18
3392 3455 3.696051 GGGTGTATTGCATGAGTGTTGAT 59.304 43.478 0.00 0.00 0.00 2.57
3393 3456 4.201950 GGGTGTATTGCATGAGTGTTGATC 60.202 45.833 0.00 0.00 0.00 2.92
3394 3457 4.494690 GGTGTATTGCATGAGTGTTGATCG 60.495 45.833 0.00 0.00 0.00 3.69
3395 3458 4.093408 GTGTATTGCATGAGTGTTGATCGT 59.907 41.667 0.00 0.00 0.00 3.73
3396 3459 4.694982 TGTATTGCATGAGTGTTGATCGTT 59.305 37.500 0.00 0.00 0.00 3.85
3397 3460 3.811722 TTGCATGAGTGTTGATCGTTC 57.188 42.857 0.00 0.00 0.00 3.95
3398 3461 2.765122 TGCATGAGTGTTGATCGTTCA 58.235 42.857 0.00 0.00 0.00 3.18
3399 3462 3.337358 TGCATGAGTGTTGATCGTTCAT 58.663 40.909 0.00 0.00 0.00 2.57
3400 3463 4.502962 TGCATGAGTGTTGATCGTTCATA 58.497 39.130 0.00 0.00 0.00 2.15
3401 3464 5.118286 TGCATGAGTGTTGATCGTTCATAT 58.882 37.500 0.00 0.00 0.00 1.78
3402 3465 6.279882 TGCATGAGTGTTGATCGTTCATATA 58.720 36.000 0.00 0.00 0.00 0.86
3403 3466 6.421801 TGCATGAGTGTTGATCGTTCATATAG 59.578 38.462 0.00 0.00 0.00 1.31
3404 3467 6.128715 GCATGAGTGTTGATCGTTCATATAGG 60.129 42.308 0.00 0.00 0.00 2.57
3405 3468 6.465439 TGAGTGTTGATCGTTCATATAGGT 57.535 37.500 0.00 0.00 0.00 3.08
3406 3469 6.873997 TGAGTGTTGATCGTTCATATAGGTT 58.126 36.000 0.00 0.00 0.00 3.50
3407 3470 8.002984 TGAGTGTTGATCGTTCATATAGGTTA 57.997 34.615 0.00 0.00 0.00 2.85
3408 3471 8.135529 TGAGTGTTGATCGTTCATATAGGTTAG 58.864 37.037 0.00 0.00 0.00 2.34
3409 3472 8.234136 AGTGTTGATCGTTCATATAGGTTAGA 57.766 34.615 0.00 0.00 0.00 2.10
3410 3473 8.861086 AGTGTTGATCGTTCATATAGGTTAGAT 58.139 33.333 0.00 0.00 0.00 1.98
3411 3474 8.916654 GTGTTGATCGTTCATATAGGTTAGATG 58.083 37.037 0.00 0.00 0.00 2.90
3412 3475 8.856103 TGTTGATCGTTCATATAGGTTAGATGA 58.144 33.333 0.00 0.00 34.85 2.92
3413 3476 9.692749 GTTGATCGTTCATATAGGTTAGATGAA 57.307 33.333 0.00 2.88 42.25 2.57
3414 3477 9.914131 TTGATCGTTCATATAGGTTAGATGAAG 57.086 33.333 6.43 3.08 44.27 3.02
3415 3478 9.078990 TGATCGTTCATATAGGTTAGATGAAGT 57.921 33.333 6.43 0.00 44.27 3.01
3416 3479 9.347934 GATCGTTCATATAGGTTAGATGAAGTG 57.652 37.037 6.43 3.93 44.27 3.16
3417 3480 8.234136 TCGTTCATATAGGTTAGATGAAGTGT 57.766 34.615 6.43 0.00 44.27 3.55
3418 3481 8.692710 TCGTTCATATAGGTTAGATGAAGTGTT 58.307 33.333 6.43 0.00 44.27 3.32
3419 3482 9.961265 CGTTCATATAGGTTAGATGAAGTGTTA 57.039 33.333 6.43 0.00 44.27 2.41
3426 3489 7.182817 AGGTTAGATGAAGTGTTACATAGCA 57.817 36.000 0.00 0.00 0.00 3.49
3427 3490 7.042335 AGGTTAGATGAAGTGTTACATAGCAC 58.958 38.462 0.00 0.00 37.64 4.40
3428 3491 6.258068 GGTTAGATGAAGTGTTACATAGCACC 59.742 42.308 2.63 0.00 38.04 5.01
3429 3492 5.420725 AGATGAAGTGTTACATAGCACCA 57.579 39.130 2.63 0.00 38.04 4.17
3430 3493 5.804639 AGATGAAGTGTTACATAGCACCAA 58.195 37.500 2.63 0.00 38.04 3.67
3431 3494 5.877012 AGATGAAGTGTTACATAGCACCAAG 59.123 40.000 2.63 0.00 38.04 3.61
3432 3495 4.968259 TGAAGTGTTACATAGCACCAAGT 58.032 39.130 2.63 0.00 38.04 3.16
3433 3496 5.373222 TGAAGTGTTACATAGCACCAAGTT 58.627 37.500 2.63 0.00 38.04 2.66
3434 3497 5.238432 TGAAGTGTTACATAGCACCAAGTTG 59.762 40.000 0.00 0.00 38.04 3.16
3435 3498 4.714632 AGTGTTACATAGCACCAAGTTGT 58.285 39.130 1.45 0.00 38.04 3.32
3436 3499 5.860611 AGTGTTACATAGCACCAAGTTGTA 58.139 37.500 1.45 0.00 38.04 2.41
3437 3500 5.699458 AGTGTTACATAGCACCAAGTTGTAC 59.301 40.000 1.45 0.00 38.04 2.90
3438 3501 5.699458 GTGTTACATAGCACCAAGTTGTACT 59.301 40.000 1.45 0.00 32.18 2.73
3439 3502 5.699001 TGTTACATAGCACCAAGTTGTACTG 59.301 40.000 1.45 0.00 0.00 2.74
3440 3503 3.074412 ACATAGCACCAAGTTGTACTGC 58.926 45.455 1.45 5.80 0.00 4.40
3441 3504 2.920724 TAGCACCAAGTTGTACTGCA 57.079 45.000 15.80 0.00 0.00 4.41
3442 3505 2.276732 AGCACCAAGTTGTACTGCAT 57.723 45.000 15.80 3.41 0.00 3.96
3443 3506 2.154462 AGCACCAAGTTGTACTGCATC 58.846 47.619 15.80 0.00 0.00 3.91
3444 3507 1.200020 GCACCAAGTTGTACTGCATCC 59.800 52.381 1.45 0.00 0.00 3.51
3445 3508 2.783135 CACCAAGTTGTACTGCATCCT 58.217 47.619 1.45 0.00 0.00 3.24
3446 3509 2.744202 CACCAAGTTGTACTGCATCCTC 59.256 50.000 1.45 0.00 0.00 3.71
3447 3510 2.290323 ACCAAGTTGTACTGCATCCTCC 60.290 50.000 1.45 0.00 0.00 4.30
3448 3511 2.026822 CCAAGTTGTACTGCATCCTCCT 60.027 50.000 1.45 0.00 0.00 3.69
3449 3512 3.005554 CAAGTTGTACTGCATCCTCCTG 58.994 50.000 0.00 0.00 0.00 3.86
3450 3513 1.556911 AGTTGTACTGCATCCTCCTGG 59.443 52.381 0.00 0.00 0.00 4.45
3451 3514 0.911769 TTGTACTGCATCCTCCTGGG 59.088 55.000 0.00 0.00 0.00 4.45
3461 3524 1.776662 TCCTCCTGGGATACGTTGAG 58.223 55.000 0.00 0.00 39.58 3.02
3462 3525 0.753262 CCTCCTGGGATACGTTGAGG 59.247 60.000 0.00 0.00 38.26 3.86
3463 3526 1.486211 CTCCTGGGATACGTTGAGGT 58.514 55.000 0.00 0.00 37.60 3.85
3464 3527 1.137086 CTCCTGGGATACGTTGAGGTG 59.863 57.143 0.00 0.00 37.60 4.00
3492 3555 3.146066 GGGTGTATTGCTTGAGTGTTGA 58.854 45.455 0.00 0.00 0.00 3.18
3533 3596 8.833231 AGAAGATAATTCAAGTTCTCGTCAAA 57.167 30.769 0.00 0.00 0.00 2.69
3534 3597 8.930760 AGAAGATAATTCAAGTTCTCGTCAAAG 58.069 33.333 0.00 0.00 0.00 2.77
3543 3606 7.409697 TCAAGTTCTCGTCAAAGAAAAAGATG 58.590 34.615 0.00 0.00 37.04 2.90
3560 3623 8.822652 AAAAAGATGATTCAAGCGAAGAAAAT 57.177 26.923 0.00 0.00 33.74 1.82
3570 3633 4.667519 AGCGAAGAAAATAGGGTCGTAT 57.332 40.909 0.00 0.00 34.29 3.06
3577 3640 7.378995 CGAAGAAAATAGGGTCGTATTAGACAG 59.621 40.741 0.00 0.00 42.62 3.51
3582 3645 9.632638 AAAATAGGGTCGTATTAGACAGTAGTA 57.367 33.333 0.00 0.00 42.62 1.82
3587 3650 9.883142 AGGGTCGTATTAGACAGTAGTATATAC 57.117 37.037 4.60 4.60 42.62 1.47
3589 3652 9.658799 GGTCGTATTAGACAGTAGTATATACCA 57.341 37.037 9.32 0.00 42.62 3.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.011333 ATATGCCCGTGCGTTGTAAC 58.989 50.000 0.00 0.00 41.78 2.50
24 25 1.010580 CATATGCCCGTGCGTTGTAA 58.989 50.000 0.00 0.00 41.78 2.41
25 26 0.108089 ACATATGCCCGTGCGTTGTA 60.108 50.000 1.58 0.00 41.78 2.41
26 27 1.376683 ACATATGCCCGTGCGTTGT 60.377 52.632 1.58 0.00 41.78 3.32
27 28 1.062365 CACATATGCCCGTGCGTTG 59.938 57.895 1.58 0.00 41.78 4.10
28 29 3.496711 CACATATGCCCGTGCGTT 58.503 55.556 1.58 0.00 41.78 4.84
80 81 9.469807 GGAATGATGTTAAATGTGTGTACAAAA 57.530 29.630 0.00 0.00 40.84 2.44
81 82 7.805542 CGGAATGATGTTAAATGTGTGTACAAA 59.194 33.333 0.00 0.00 40.84 2.83
82 83 7.173390 TCGGAATGATGTTAAATGTGTGTACAA 59.827 33.333 0.00 0.00 40.84 2.41
83 84 6.651225 TCGGAATGATGTTAAATGTGTGTACA 59.349 34.615 0.00 0.00 41.89 2.90
84 85 7.067532 TCGGAATGATGTTAAATGTGTGTAC 57.932 36.000 0.00 0.00 0.00 2.90
85 86 7.857734 ATCGGAATGATGTTAAATGTGTGTA 57.142 32.000 0.00 0.00 35.45 2.90
86 87 6.757897 ATCGGAATGATGTTAAATGTGTGT 57.242 33.333 0.00 0.00 35.45 3.72
99 100 6.889301 ATGTTAATCAAGCATCGGAATGAT 57.111 33.333 0.00 0.00 38.01 2.45
100 101 6.698008 AATGTTAATCAAGCATCGGAATGA 57.302 33.333 0.00 0.00 34.61 2.57
101 102 7.760131 AAAATGTTAATCAAGCATCGGAATG 57.240 32.000 0.00 0.00 35.87 2.67
136 137 9.958234 TCAAAAATGACAATCGAGTATTTGAAA 57.042 25.926 3.59 0.00 32.99 2.69
137 138 9.958234 TTCAAAAATGACAATCGAGTATTTGAA 57.042 25.926 3.59 8.42 40.13 2.69
138 139 9.958234 TTTCAAAAATGACAATCGAGTATTTGA 57.042 25.926 3.59 3.62 33.79 2.69
143 144 9.558648 CATCATTTCAAAAATGACAATCGAGTA 57.441 29.630 15.25 0.00 39.22 2.59
144 145 8.298854 TCATCATTTCAAAAATGACAATCGAGT 58.701 29.630 15.25 0.00 39.22 4.18
145 146 8.677871 TCATCATTTCAAAAATGACAATCGAG 57.322 30.769 15.25 3.39 39.22 4.04
146 147 9.642327 AATCATCATTTCAAAAATGACAATCGA 57.358 25.926 15.25 8.93 39.22 3.59
254 255 9.936759 TTAGAGTTGATGTTTGTCATGTATACA 57.063 29.630 8.27 8.27 36.83 2.29
258 259 9.419297 GTACTTAGAGTTGATGTTTGTCATGTA 57.581 33.333 0.00 0.00 36.83 2.29
259 260 7.931407 TGTACTTAGAGTTGATGTTTGTCATGT 59.069 33.333 0.00 0.00 36.83 3.21
260 261 8.310406 TGTACTTAGAGTTGATGTTTGTCATG 57.690 34.615 0.00 0.00 36.83 3.07
261 262 9.507329 AATGTACTTAGAGTTGATGTTTGTCAT 57.493 29.630 0.00 0.00 39.77 3.06
262 263 8.902540 AATGTACTTAGAGTTGATGTTTGTCA 57.097 30.769 0.00 0.00 0.00 3.58
435 436 4.569180 CATGGGCCGGCCTAGTGG 62.569 72.222 42.70 26.75 36.10 4.00
447 448 4.776322 TTCACGGGAGCGCATGGG 62.776 66.667 11.47 5.19 0.00 4.00
448 449 2.745884 TTTCACGGGAGCGCATGG 60.746 61.111 11.47 0.00 0.00 3.66
449 450 2.480555 GTTTCACGGGAGCGCATG 59.519 61.111 11.47 0.00 0.00 4.06
450 451 2.746277 GGTTTCACGGGAGCGCAT 60.746 61.111 11.47 0.00 0.00 4.73
452 453 4.699522 AGGGTTTCACGGGAGCGC 62.700 66.667 0.00 0.00 0.00 5.92
453 454 2.434359 GAGGGTTTCACGGGAGCG 60.434 66.667 0.00 0.00 0.00 5.03
454 455 2.046217 GGAGGGTTTCACGGGAGC 60.046 66.667 0.00 0.00 0.00 4.70
455 456 1.003718 GTGGAGGGTTTCACGGGAG 60.004 63.158 0.00 0.00 0.00 4.30
456 457 1.057851 AAGTGGAGGGTTTCACGGGA 61.058 55.000 0.00 0.00 38.77 5.14
457 458 0.179001 AAAGTGGAGGGTTTCACGGG 60.179 55.000 0.00 0.00 38.77 5.28
458 459 1.202770 AGAAAGTGGAGGGTTTCACGG 60.203 52.381 0.00 0.00 38.77 4.94
459 460 2.256117 AGAAAGTGGAGGGTTTCACG 57.744 50.000 0.00 0.00 38.77 4.35
460 461 4.401202 TCAAAAGAAAGTGGAGGGTTTCAC 59.599 41.667 0.00 0.00 35.49 3.18
461 462 4.605183 TCAAAAGAAAGTGGAGGGTTTCA 58.395 39.130 0.00 0.00 35.49 2.69
462 463 4.038042 CCTCAAAAGAAAGTGGAGGGTTTC 59.962 45.833 0.00 0.00 41.12 2.78
463 464 3.960755 CCTCAAAAGAAAGTGGAGGGTTT 59.039 43.478 0.00 0.00 41.12 3.27
464 465 3.566351 CCTCAAAAGAAAGTGGAGGGTT 58.434 45.455 0.00 0.00 41.12 4.11
465 466 3.229697 CCTCAAAAGAAAGTGGAGGGT 57.770 47.619 0.00 0.00 41.12 4.34
467 468 2.158460 ACCCCTCAAAAGAAAGTGGAGG 60.158 50.000 0.00 0.00 43.76 4.30
468 469 3.229697 ACCCCTCAAAAGAAAGTGGAG 57.770 47.619 0.00 0.00 0.00 3.86
469 470 3.680777 AACCCCTCAAAAGAAAGTGGA 57.319 42.857 0.00 0.00 0.00 4.02
470 471 4.441792 CAAAACCCCTCAAAAGAAAGTGG 58.558 43.478 0.00 0.00 0.00 4.00
471 472 4.441792 CCAAAACCCCTCAAAAGAAAGTG 58.558 43.478 0.00 0.00 0.00 3.16
472 473 3.454447 CCCAAAACCCCTCAAAAGAAAGT 59.546 43.478 0.00 0.00 0.00 2.66
473 474 3.454447 ACCCAAAACCCCTCAAAAGAAAG 59.546 43.478 0.00 0.00 0.00 2.62
474 475 3.455849 ACCCAAAACCCCTCAAAAGAAA 58.544 40.909 0.00 0.00 0.00 2.52
475 476 3.123392 ACCCAAAACCCCTCAAAAGAA 57.877 42.857 0.00 0.00 0.00 2.52
476 477 2.858787 ACCCAAAACCCCTCAAAAGA 57.141 45.000 0.00 0.00 0.00 2.52
477 478 2.631062 GGTACCCAAAACCCCTCAAAAG 59.369 50.000 0.00 0.00 0.00 2.27
478 479 2.680251 GGTACCCAAAACCCCTCAAAA 58.320 47.619 0.00 0.00 0.00 2.44
479 480 1.479021 CGGTACCCAAAACCCCTCAAA 60.479 52.381 6.25 0.00 33.10 2.69
480 481 0.110869 CGGTACCCAAAACCCCTCAA 59.889 55.000 6.25 0.00 33.10 3.02
481 482 1.061324 ACGGTACCCAAAACCCCTCA 61.061 55.000 6.25 0.00 33.10 3.86
482 483 0.321919 GACGGTACCCAAAACCCCTC 60.322 60.000 6.25 0.00 33.10 4.30
483 484 1.061324 TGACGGTACCCAAAACCCCT 61.061 55.000 6.25 0.00 33.10 4.79
484 485 0.178995 TTGACGGTACCCAAAACCCC 60.179 55.000 6.25 0.00 33.10 4.95
485 486 1.241165 CTTGACGGTACCCAAAACCC 58.759 55.000 6.25 0.00 33.10 4.11
486 487 1.605232 CACTTGACGGTACCCAAAACC 59.395 52.381 6.25 0.00 0.00 3.27
487 488 1.605232 CCACTTGACGGTACCCAAAAC 59.395 52.381 6.25 0.00 0.00 2.43
488 489 1.477195 CCCACTTGACGGTACCCAAAA 60.477 52.381 6.25 0.00 0.00 2.44
489 490 0.108963 CCCACTTGACGGTACCCAAA 59.891 55.000 6.25 0.00 0.00 3.28
490 491 1.756024 CCCACTTGACGGTACCCAA 59.244 57.895 6.25 4.85 0.00 4.12
491 492 2.886134 GCCCACTTGACGGTACCCA 61.886 63.158 6.25 0.00 0.00 4.51
492 493 2.046604 GCCCACTTGACGGTACCC 60.047 66.667 6.25 0.00 0.00 3.69
493 494 1.375523 CTGCCCACTTGACGGTACC 60.376 63.158 0.16 0.16 0.00 3.34
494 495 1.375523 CCTGCCCACTTGACGGTAC 60.376 63.158 0.00 0.00 0.00 3.34
495 496 3.065306 CCTGCCCACTTGACGGTA 58.935 61.111 0.00 0.00 0.00 4.02
496 497 4.643387 GCCTGCCCACTTGACGGT 62.643 66.667 0.00 0.00 0.00 4.83
498 499 4.641645 TGGCCTGCCCACTTGACG 62.642 66.667 3.32 0.00 39.18 4.35
499 500 2.674380 CTGGCCTGCCCACTTGAC 60.674 66.667 3.32 0.00 39.18 3.18
500 501 2.853542 TCTGGCCTGCCCACTTGA 60.854 61.111 3.32 0.00 39.18 3.02
501 502 2.674380 GTCTGGCCTGCCCACTTG 60.674 66.667 3.32 0.00 39.18 3.16
502 503 3.971702 GGTCTGGCCTGCCCACTT 61.972 66.667 4.61 0.00 39.18 3.16
507 508 3.808218 TTGTTGGGTCTGGCCTGCC 62.808 63.158 3.32 9.39 37.43 4.85
508 509 2.203480 TTGTTGGGTCTGGCCTGC 60.203 61.111 3.32 0.00 37.43 4.85
509 510 0.038744 ATCTTGTTGGGTCTGGCCTG 59.961 55.000 3.32 2.92 37.43 4.85
510 511 1.668826 TATCTTGTTGGGTCTGGCCT 58.331 50.000 3.32 0.00 37.43 5.19
511 512 2.507407 TTATCTTGTTGGGTCTGGCC 57.493 50.000 0.00 0.00 0.00 5.36
512 513 3.131046 CCAATTATCTTGTTGGGTCTGGC 59.869 47.826 0.00 0.00 40.90 4.85
513 514 4.599041 TCCAATTATCTTGTTGGGTCTGG 58.401 43.478 4.49 0.00 43.96 3.86
514 515 6.604795 AGATTCCAATTATCTTGTTGGGTCTG 59.395 38.462 4.49 0.00 43.96 3.51
515 516 6.604795 CAGATTCCAATTATCTTGTTGGGTCT 59.395 38.462 4.49 5.93 43.96 3.85
516 517 6.681368 GCAGATTCCAATTATCTTGTTGGGTC 60.681 42.308 4.49 4.06 43.96 4.46
517 518 5.127682 GCAGATTCCAATTATCTTGTTGGGT 59.872 40.000 4.49 0.00 43.96 4.51
518 519 5.127519 TGCAGATTCCAATTATCTTGTTGGG 59.872 40.000 4.49 0.00 43.96 4.12
519 520 6.211587 TGCAGATTCCAATTATCTTGTTGG 57.788 37.500 0.00 0.00 44.92 3.77
520 521 5.747197 GCTGCAGATTCCAATTATCTTGTTG 59.253 40.000 20.43 0.00 30.05 3.33
521 522 5.163478 GGCTGCAGATTCCAATTATCTTGTT 60.163 40.000 20.43 0.00 30.05 2.83
522 523 4.340381 GGCTGCAGATTCCAATTATCTTGT 59.660 41.667 20.43 0.00 30.05 3.16
523 524 4.583489 AGGCTGCAGATTCCAATTATCTTG 59.417 41.667 20.43 0.00 30.05 3.02
524 525 4.801164 AGGCTGCAGATTCCAATTATCTT 58.199 39.130 20.43 0.00 30.05 2.40
525 526 4.450305 AGGCTGCAGATTCCAATTATCT 57.550 40.909 20.43 0.00 32.66 1.98
526 527 7.772292 TCATATAGGCTGCAGATTCCAATTATC 59.228 37.037 20.43 0.00 0.00 1.75
527 528 7.636579 TCATATAGGCTGCAGATTCCAATTAT 58.363 34.615 20.43 6.17 0.00 1.28
528 529 7.019656 TCATATAGGCTGCAGATTCCAATTA 57.980 36.000 20.43 3.24 0.00 1.40
529 530 5.884322 TCATATAGGCTGCAGATTCCAATT 58.116 37.500 20.43 1.02 0.00 2.32
530 531 5.509832 TCATATAGGCTGCAGATTCCAAT 57.490 39.130 20.43 3.89 0.00 3.16
531 532 4.980339 TCATATAGGCTGCAGATTCCAA 57.020 40.909 20.43 0.00 0.00 3.53
532 533 5.509832 AATCATATAGGCTGCAGATTCCA 57.490 39.130 20.43 0.00 0.00 3.53
533 534 7.928307 TTTAATCATATAGGCTGCAGATTCC 57.072 36.000 20.43 9.57 0.00 3.01
534 535 8.333908 CGATTTAATCATATAGGCTGCAGATTC 58.666 37.037 20.43 5.94 0.00 2.52
535 536 7.201679 GCGATTTAATCATATAGGCTGCAGATT 60.202 37.037 20.43 8.32 0.00 2.40
536 537 6.259608 GCGATTTAATCATATAGGCTGCAGAT 59.740 38.462 20.43 7.58 0.00 2.90
537 538 5.582269 GCGATTTAATCATATAGGCTGCAGA 59.418 40.000 20.43 0.00 0.00 4.26
538 539 5.220739 GGCGATTTAATCATATAGGCTGCAG 60.221 44.000 10.11 10.11 0.00 4.41
539 540 4.635765 GGCGATTTAATCATATAGGCTGCA 59.364 41.667 0.50 0.00 0.00 4.41
540 541 4.878397 AGGCGATTTAATCATATAGGCTGC 59.122 41.667 5.76 0.00 32.55 5.25
541 542 8.492673 TTTAGGCGATTTAATCATATAGGCTG 57.507 34.615 13.15 0.00 34.86 4.85
542 543 9.331282 GATTTAGGCGATTTAATCATATAGGCT 57.669 33.333 5.76 8.11 36.52 4.58
543 544 9.331282 AGATTTAGGCGATTTAATCATATAGGC 57.669 33.333 5.76 1.08 31.12 3.93
549 550 8.784043 GGTGTTAGATTTAGGCGATTTAATCAT 58.216 33.333 5.76 0.00 31.12 2.45
550 551 7.227910 GGGTGTTAGATTTAGGCGATTTAATCA 59.772 37.037 5.76 0.00 31.12 2.57
551 552 7.227910 TGGGTGTTAGATTTAGGCGATTTAATC 59.772 37.037 0.00 0.00 0.00 1.75
552 553 7.057894 TGGGTGTTAGATTTAGGCGATTTAAT 58.942 34.615 0.00 0.00 0.00 1.40
553 554 6.416415 TGGGTGTTAGATTTAGGCGATTTAA 58.584 36.000 0.00 0.00 0.00 1.52
554 555 5.991861 TGGGTGTTAGATTTAGGCGATTTA 58.008 37.500 0.00 0.00 0.00 1.40
555 556 4.850680 TGGGTGTTAGATTTAGGCGATTT 58.149 39.130 0.00 0.00 0.00 2.17
556 557 4.497291 TGGGTGTTAGATTTAGGCGATT 57.503 40.909 0.00 0.00 0.00 3.34
557 558 4.706842 ATGGGTGTTAGATTTAGGCGAT 57.293 40.909 0.00 0.00 0.00 4.58
558 559 4.497291 AATGGGTGTTAGATTTAGGCGA 57.503 40.909 0.00 0.00 0.00 5.54
559 560 4.036380 GGAAATGGGTGTTAGATTTAGGCG 59.964 45.833 0.00 0.00 0.00 5.52
560 561 4.341235 GGGAAATGGGTGTTAGATTTAGGC 59.659 45.833 0.00 0.00 0.00 3.93
561 562 5.594317 CAGGGAAATGGGTGTTAGATTTAGG 59.406 44.000 0.00 0.00 0.00 2.69
562 563 5.594317 CCAGGGAAATGGGTGTTAGATTTAG 59.406 44.000 0.00 0.00 36.64 1.85
563 564 5.515106 CCAGGGAAATGGGTGTTAGATTTA 58.485 41.667 0.00 0.00 36.64 1.40
564 565 4.352893 CCAGGGAAATGGGTGTTAGATTT 58.647 43.478 0.00 0.00 36.64 2.17
565 566 3.981212 CCAGGGAAATGGGTGTTAGATT 58.019 45.455 0.00 0.00 36.64 2.40
566 567 3.669939 CCAGGGAAATGGGTGTTAGAT 57.330 47.619 0.00 0.00 36.64 1.98
580 581 0.267960 GAATAGGAGGTCCCCAGGGA 59.732 60.000 7.25 3.80 42.90 4.20
581 582 1.122019 CGAATAGGAGGTCCCCAGGG 61.122 65.000 0.00 0.00 36.42 4.45
582 583 1.122019 CCGAATAGGAGGTCCCCAGG 61.122 65.000 0.00 0.00 45.00 4.45
583 584 1.759459 GCCGAATAGGAGGTCCCCAG 61.759 65.000 0.00 0.00 45.00 4.45
584 585 1.764854 GCCGAATAGGAGGTCCCCA 60.765 63.158 0.00 0.00 45.00 4.96
585 586 0.178941 TAGCCGAATAGGAGGTCCCC 60.179 60.000 0.00 0.00 45.00 4.81
586 587 0.967662 GTAGCCGAATAGGAGGTCCC 59.032 60.000 0.00 0.00 45.00 4.46
587 588 0.967662 GGTAGCCGAATAGGAGGTCC 59.032 60.000 0.00 0.00 45.00 4.46
588 589 1.614413 CAGGTAGCCGAATAGGAGGTC 59.386 57.143 0.00 0.00 45.00 3.85
589 590 1.063114 ACAGGTAGCCGAATAGGAGGT 60.063 52.381 0.00 0.00 45.00 3.85
590 591 1.705873 ACAGGTAGCCGAATAGGAGG 58.294 55.000 0.00 0.00 45.00 4.30
591 592 4.767928 AGATTACAGGTAGCCGAATAGGAG 59.232 45.833 0.00 0.00 45.00 3.69
592 593 4.737578 AGATTACAGGTAGCCGAATAGGA 58.262 43.478 0.00 0.00 45.00 2.94
593 594 6.585695 TTAGATTACAGGTAGCCGAATAGG 57.414 41.667 0.00 0.00 44.97 2.57
594 595 7.924412 TGTTTTAGATTACAGGTAGCCGAATAG 59.076 37.037 0.00 0.00 0.00 1.73
595 596 7.784037 TGTTTTAGATTACAGGTAGCCGAATA 58.216 34.615 0.00 0.00 0.00 1.75
596 597 6.646267 TGTTTTAGATTACAGGTAGCCGAAT 58.354 36.000 0.00 0.00 0.00 3.34
597 598 6.040209 TGTTTTAGATTACAGGTAGCCGAA 57.960 37.500 0.00 0.00 0.00 4.30
598 599 5.664294 TGTTTTAGATTACAGGTAGCCGA 57.336 39.130 0.00 0.00 0.00 5.54
599 600 6.103997 TCTTGTTTTAGATTACAGGTAGCCG 58.896 40.000 0.00 0.00 0.00 5.52
600 601 6.037281 GCTCTTGTTTTAGATTACAGGTAGCC 59.963 42.308 0.00 0.00 0.00 3.93
601 602 6.594159 TGCTCTTGTTTTAGATTACAGGTAGC 59.406 38.462 0.00 0.00 31.64 3.58
602 603 8.723942 ATGCTCTTGTTTTAGATTACAGGTAG 57.276 34.615 0.00 0.00 0.00 3.18
603 604 8.318412 TGATGCTCTTGTTTTAGATTACAGGTA 58.682 33.333 0.00 0.00 0.00 3.08
604 605 7.168219 TGATGCTCTTGTTTTAGATTACAGGT 58.832 34.615 0.00 0.00 0.00 4.00
605 606 7.335422 ACTGATGCTCTTGTTTTAGATTACAGG 59.665 37.037 0.00 0.00 0.00 4.00
606 607 8.261492 ACTGATGCTCTTGTTTTAGATTACAG 57.739 34.615 0.00 0.00 0.00 2.74
607 608 8.621532 AACTGATGCTCTTGTTTTAGATTACA 57.378 30.769 0.00 0.00 0.00 2.41
608 609 9.899226 AAAACTGATGCTCTTGTTTTAGATTAC 57.101 29.630 0.00 0.00 39.74 1.89
650 653 6.037062 GGCTTGCTCTTGTTTGTTTATTTGTT 59.963 34.615 0.00 0.00 0.00 2.83
651 654 5.523552 GGCTTGCTCTTGTTTGTTTATTTGT 59.476 36.000 0.00 0.00 0.00 2.83
652 655 5.523188 TGGCTTGCTCTTGTTTGTTTATTTG 59.477 36.000 0.00 0.00 0.00 2.32
656 659 4.681744 CTTGGCTTGCTCTTGTTTGTTTA 58.318 39.130 0.00 0.00 0.00 2.01
972 977 4.980805 GGGTTCGCGTGTGGCTGA 62.981 66.667 5.77 0.00 40.44 4.26
1083 1106 1.365633 GTTTCCGTTGCCATTGCCA 59.634 52.632 0.00 0.00 36.33 4.92
1212 1235 1.160137 GCATGGAGTTGAGCGTCTTT 58.840 50.000 0.00 0.00 0.00 2.52
1569 1592 2.048127 GACAGGCTCGCGACCTTT 60.048 61.111 22.35 18.05 34.42 3.11
1610 1633 2.336554 CAACAGCTCGGAATTGTTGG 57.663 50.000 19.00 7.39 44.80 3.77
1761 1784 1.564348 GCCTTCAACTTCCCCTCCATA 59.436 52.381 0.00 0.00 0.00 2.74
1902 1925 1.133853 AGCTCCCTCTTCATTGCCATC 60.134 52.381 0.00 0.00 0.00 3.51
1910 1933 3.795688 ACAAATCAAGCTCCCTCTTCA 57.204 42.857 0.00 0.00 0.00 3.02
1953 1976 2.430465 GCTTCAGCAACCTCTGATTGA 58.570 47.619 0.00 0.00 42.12 2.57
2026 2049 1.455383 GCCTTCACCAACACACCCAG 61.455 60.000 0.00 0.00 0.00 4.45
2100 2123 1.270907 TCCTCTTGAGGCTCTCCAAC 58.729 55.000 16.72 0.00 33.74 3.77
2284 2307 3.245797 TCAGAACTGAATTCTTCTCGCG 58.754 45.455 7.05 0.00 46.05 5.87
2349 2372 5.563671 GCAGTTCTCCAGTTCCTTGATTTTC 60.564 44.000 0.00 0.00 0.00 2.29
2360 2383 2.664402 ACCATTGCAGTTCTCCAGTT 57.336 45.000 0.00 0.00 0.00 3.16
2412 2435 3.515104 TCCCATTCTTTTCCTTCAATGCC 59.485 43.478 0.00 0.00 0.00 4.40
2444 2467 1.283029 CCTCAGCCTCATTGGAAAGGA 59.717 52.381 0.00 0.00 38.35 3.36
2449 2472 1.910722 GCTCCTCAGCCTCATTGGA 59.089 57.895 0.00 0.00 40.14 3.53
2749 2772 3.497118 TCAACAGCAACAAGAACAAACG 58.503 40.909 0.00 0.00 0.00 3.60
2844 2867 4.724279 ACAGGAAATCCACATATACCCC 57.276 45.455 1.67 0.00 38.89 4.95
2854 2877 1.142060 ACGACACCAACAGGAAATCCA 59.858 47.619 1.67 0.00 38.89 3.41
2872 2895 4.466567 TGCAAGCCGATATGATAAAACG 57.533 40.909 0.00 0.00 0.00 3.60
2894 2917 1.833630 CTACCAGCTCAAGGTCCATCA 59.166 52.381 0.00 0.00 40.54 3.07
2941 2964 1.200020 GCACACTTAACACATCCCAGC 59.800 52.381 0.00 0.00 0.00 4.85
2960 2983 7.313951 AGAAGTCTATAACAAAGCATCTTGC 57.686 36.000 0.00 0.00 45.46 4.01
2961 2984 8.394121 GGAAGAAGTCTATAACAAAGCATCTTG 58.606 37.037 0.00 0.00 0.00 3.02
2962 2985 8.103305 TGGAAGAAGTCTATAACAAAGCATCTT 58.897 33.333 0.00 0.00 0.00 2.40
2963 2986 7.624549 TGGAAGAAGTCTATAACAAAGCATCT 58.375 34.615 0.00 0.00 0.00 2.90
2964 2987 7.550906 ACTGGAAGAAGTCTATAACAAAGCATC 59.449 37.037 0.00 0.00 37.43 3.91
2965 2988 7.335422 CACTGGAAGAAGTCTATAACAAAGCAT 59.665 37.037 0.00 0.00 37.43 3.79
2966 2989 6.650807 CACTGGAAGAAGTCTATAACAAAGCA 59.349 38.462 0.00 0.00 37.43 3.91
2967 2990 6.402658 GCACTGGAAGAAGTCTATAACAAAGC 60.403 42.308 0.00 0.00 37.43 3.51
2968 2991 6.876257 AGCACTGGAAGAAGTCTATAACAAAG 59.124 38.462 0.00 0.00 37.43 2.77
2969 2992 6.769512 AGCACTGGAAGAAGTCTATAACAAA 58.230 36.000 0.00 0.00 37.43 2.83
2970 2993 6.360370 AGCACTGGAAGAAGTCTATAACAA 57.640 37.500 0.00 0.00 37.43 2.83
2971 2994 6.360370 AAGCACTGGAAGAAGTCTATAACA 57.640 37.500 0.00 0.00 37.43 2.41
2972 2995 7.489757 CACTAAGCACTGGAAGAAGTCTATAAC 59.510 40.741 0.00 0.00 37.43 1.89
2973 2996 7.396339 TCACTAAGCACTGGAAGAAGTCTATAA 59.604 37.037 0.00 0.00 37.43 0.98
2974 2997 6.890268 TCACTAAGCACTGGAAGAAGTCTATA 59.110 38.462 0.00 0.00 37.43 1.31
2975 2998 5.717178 TCACTAAGCACTGGAAGAAGTCTAT 59.283 40.000 0.00 0.00 37.43 1.98
2976 2999 5.077564 TCACTAAGCACTGGAAGAAGTCTA 58.922 41.667 0.00 0.00 37.43 2.59
2977 3000 3.898123 TCACTAAGCACTGGAAGAAGTCT 59.102 43.478 0.00 0.00 37.43 3.24
3088 3111 7.378461 CGTACAACTACATTTCTGTGCAAAAAT 59.622 33.333 0.00 0.00 36.79 1.82
3090 3113 6.195868 CGTACAACTACATTTCTGTGCAAAA 58.804 36.000 0.00 0.00 36.79 2.44
3094 3156 3.424433 GCCGTACAACTACATTTCTGTGC 60.424 47.826 0.00 0.00 36.79 4.57
3104 3167 1.000060 TCACCACAGCCGTACAACTAC 60.000 52.381 0.00 0.00 0.00 2.73
3106 3169 0.685097 ATCACCACAGCCGTACAACT 59.315 50.000 0.00 0.00 0.00 3.16
3162 3225 4.340666 TGAGCAAATGCAGGACAACTAAAA 59.659 37.500 8.28 0.00 45.16 1.52
3166 3229 1.985473 TGAGCAAATGCAGGACAACT 58.015 45.000 8.28 0.00 45.16 3.16
3177 3240 7.607607 TGTATTTCTCTACACACATGAGCAAAT 59.392 33.333 0.00 0.00 0.00 2.32
3189 3252 5.938125 TGCCCTTCTTTGTATTTCTCTACAC 59.062 40.000 0.00 0.00 31.51 2.90
3201 3264 3.321968 GGTTGAGAAATGCCCTTCTTTGT 59.678 43.478 0.00 0.00 35.76 2.83
3213 3276 9.965824 CATAGTGTTTTAAAGTGGTTGAGAAAT 57.034 29.630 0.00 0.00 0.00 2.17
3219 3282 8.076178 CCTCTTCATAGTGTTTTAAAGTGGTTG 58.924 37.037 0.00 0.00 0.00 3.77
3226 3289 5.636123 TGGCCCTCTTCATAGTGTTTTAAA 58.364 37.500 0.00 0.00 0.00 1.52
3228 3291 4.919774 TGGCCCTCTTCATAGTGTTTTA 57.080 40.909 0.00 0.00 0.00 1.52
3302 3365 6.092259 GGTGCTATGTAGTAACACTTCAAAGG 59.908 42.308 0.00 0.00 38.78 3.11
3314 3377 6.627243 CAGTACAACTTGGTGCTATGTAGTA 58.373 40.000 0.00 0.00 32.21 1.82
3315 3378 5.479306 CAGTACAACTTGGTGCTATGTAGT 58.521 41.667 0.00 0.00 32.21 2.73
3316 3379 4.330074 GCAGTACAACTTGGTGCTATGTAG 59.670 45.833 0.00 0.00 32.21 2.74
3337 3400 1.496060 ACGTATCCCAGGAAGATGCA 58.504 50.000 0.00 0.00 0.00 3.96
3363 3426 2.754552 TCATGCAATACACCCAAAGCTC 59.245 45.455 0.00 0.00 0.00 4.09
3365 3428 2.493278 ACTCATGCAATACACCCAAAGC 59.507 45.455 0.00 0.00 0.00 3.51
3366 3429 3.507233 ACACTCATGCAATACACCCAAAG 59.493 43.478 0.00 0.00 0.00 2.77
3367 3430 3.495331 ACACTCATGCAATACACCCAAA 58.505 40.909 0.00 0.00 0.00 3.28
3368 3431 3.153369 ACACTCATGCAATACACCCAA 57.847 42.857 0.00 0.00 0.00 4.12
3369 3432 2.819019 CAACACTCATGCAATACACCCA 59.181 45.455 0.00 0.00 0.00 4.51
3370 3433 3.081061 TCAACACTCATGCAATACACCC 58.919 45.455 0.00 0.00 0.00 4.61
3371 3434 4.494690 CGATCAACACTCATGCAATACACC 60.495 45.833 0.00 0.00 0.00 4.16
3372 3435 4.093408 ACGATCAACACTCATGCAATACAC 59.907 41.667 0.00 0.00 0.00 2.90
3373 3436 4.252878 ACGATCAACACTCATGCAATACA 58.747 39.130 0.00 0.00 0.00 2.29
3374 3437 4.864916 ACGATCAACACTCATGCAATAC 57.135 40.909 0.00 0.00 0.00 1.89
3375 3438 4.934602 TGAACGATCAACACTCATGCAATA 59.065 37.500 0.00 0.00 30.99 1.90
3376 3439 3.752747 TGAACGATCAACACTCATGCAAT 59.247 39.130 0.00 0.00 30.99 3.56
3377 3440 3.137533 TGAACGATCAACACTCATGCAA 58.862 40.909 0.00 0.00 30.99 4.08
3378 3441 2.765122 TGAACGATCAACACTCATGCA 58.235 42.857 0.00 0.00 30.99 3.96
3379 3442 5.663795 ATATGAACGATCAACACTCATGC 57.336 39.130 0.00 0.00 39.49 4.06
3380 3443 6.925718 ACCTATATGAACGATCAACACTCATG 59.074 38.462 0.00 0.00 39.49 3.07
3381 3444 7.055667 ACCTATATGAACGATCAACACTCAT 57.944 36.000 0.00 0.00 39.49 2.90
3382 3445 6.465439 ACCTATATGAACGATCAACACTCA 57.535 37.500 0.00 0.00 39.49 3.41
3383 3446 8.350722 TCTAACCTATATGAACGATCAACACTC 58.649 37.037 0.00 0.00 39.49 3.51
3384 3447 8.234136 TCTAACCTATATGAACGATCAACACT 57.766 34.615 0.00 0.00 39.49 3.55
3385 3448 8.916654 CATCTAACCTATATGAACGATCAACAC 58.083 37.037 0.00 0.00 39.49 3.32
3386 3449 8.856103 TCATCTAACCTATATGAACGATCAACA 58.144 33.333 0.00 0.00 39.49 3.33
3387 3450 9.692749 TTCATCTAACCTATATGAACGATCAAC 57.307 33.333 0.00 0.00 39.49 3.18
3388 3451 9.914131 CTTCATCTAACCTATATGAACGATCAA 57.086 33.333 0.00 0.00 39.49 2.57
3389 3452 9.078990 ACTTCATCTAACCTATATGAACGATCA 57.921 33.333 0.00 0.00 40.57 2.92
3390 3453 9.347934 CACTTCATCTAACCTATATGAACGATC 57.652 37.037 0.00 0.00 35.32 3.69
3391 3454 8.861086 ACACTTCATCTAACCTATATGAACGAT 58.139 33.333 0.00 0.00 35.32 3.73
3392 3455 8.234136 ACACTTCATCTAACCTATATGAACGA 57.766 34.615 0.00 0.00 35.32 3.85
3393 3456 8.873215 AACACTTCATCTAACCTATATGAACG 57.127 34.615 0.00 0.00 35.32 3.95
3400 3463 8.924303 TGCTATGTAACACTTCATCTAACCTAT 58.076 33.333 0.00 0.00 0.00 2.57
3401 3464 8.195436 GTGCTATGTAACACTTCATCTAACCTA 58.805 37.037 0.00 0.00 33.92 3.08
3402 3465 7.042335 GTGCTATGTAACACTTCATCTAACCT 58.958 38.462 0.00 0.00 33.92 3.50
3403 3466 6.258068 GGTGCTATGTAACACTTCATCTAACC 59.742 42.308 0.00 0.00 36.99 2.85
3404 3467 6.816640 TGGTGCTATGTAACACTTCATCTAAC 59.183 38.462 0.00 0.00 36.99 2.34
3405 3468 6.941857 TGGTGCTATGTAACACTTCATCTAA 58.058 36.000 0.00 0.00 36.99 2.10
3406 3469 6.538945 TGGTGCTATGTAACACTTCATCTA 57.461 37.500 0.00 0.00 36.99 1.98
3407 3470 5.420725 TGGTGCTATGTAACACTTCATCT 57.579 39.130 0.00 0.00 36.99 2.90
3408 3471 5.643777 ACTTGGTGCTATGTAACACTTCATC 59.356 40.000 0.00 0.00 36.99 2.92
3409 3472 5.560724 ACTTGGTGCTATGTAACACTTCAT 58.439 37.500 0.00 0.00 36.99 2.57
3410 3473 4.968259 ACTTGGTGCTATGTAACACTTCA 58.032 39.130 0.00 0.00 36.99 3.02
3411 3474 5.238650 ACAACTTGGTGCTATGTAACACTTC 59.761 40.000 0.00 0.00 36.99 3.01
3412 3475 5.130350 ACAACTTGGTGCTATGTAACACTT 58.870 37.500 0.00 0.00 36.99 3.16
3413 3476 4.714632 ACAACTTGGTGCTATGTAACACT 58.285 39.130 0.00 0.00 36.99 3.55
3414 3477 5.699458 AGTACAACTTGGTGCTATGTAACAC 59.301 40.000 0.00 0.00 31.65 3.32
3415 3478 5.699001 CAGTACAACTTGGTGCTATGTAACA 59.301 40.000 0.00 0.00 32.21 2.41
3416 3479 5.390567 GCAGTACAACTTGGTGCTATGTAAC 60.391 44.000 0.00 0.00 32.21 2.50
3417 3480 4.693566 GCAGTACAACTTGGTGCTATGTAA 59.306 41.667 0.00 0.00 32.21 2.41
3418 3481 4.250464 GCAGTACAACTTGGTGCTATGTA 58.750 43.478 0.00 0.00 32.21 2.29
3419 3482 3.074412 GCAGTACAACTTGGTGCTATGT 58.926 45.455 0.00 0.00 32.21 2.29
3420 3483 3.073678 TGCAGTACAACTTGGTGCTATG 58.926 45.455 11.93 0.00 35.11 2.23
3421 3484 3.417069 TGCAGTACAACTTGGTGCTAT 57.583 42.857 11.93 0.00 35.11 2.97
3422 3485 2.920724 TGCAGTACAACTTGGTGCTA 57.079 45.000 11.93 0.76 35.11 3.49
3423 3486 2.154462 GATGCAGTACAACTTGGTGCT 58.846 47.619 11.93 0.00 35.11 4.40
3424 3487 1.200020 GGATGCAGTACAACTTGGTGC 59.800 52.381 0.00 6.22 34.62 5.01
3425 3488 2.744202 GAGGATGCAGTACAACTTGGTG 59.256 50.000 0.00 0.00 0.00 4.17
3426 3489 2.290323 GGAGGATGCAGTACAACTTGGT 60.290 50.000 0.00 0.00 0.00 3.67
3427 3490 2.026822 AGGAGGATGCAGTACAACTTGG 60.027 50.000 0.00 0.00 0.00 3.61
3428 3491 3.005554 CAGGAGGATGCAGTACAACTTG 58.994 50.000 0.00 0.00 0.00 3.16
3429 3492 2.026822 CCAGGAGGATGCAGTACAACTT 60.027 50.000 0.00 0.00 36.89 2.66
3430 3493 1.556911 CCAGGAGGATGCAGTACAACT 59.443 52.381 0.00 0.00 36.89 3.16
3431 3494 1.407437 CCCAGGAGGATGCAGTACAAC 60.407 57.143 0.00 0.00 38.24 3.32
3432 3495 0.911769 CCCAGGAGGATGCAGTACAA 59.088 55.000 0.00 0.00 38.24 2.41
3433 3496 0.042581 TCCCAGGAGGATGCAGTACA 59.957 55.000 0.00 0.00 40.93 2.90
3434 3497 2.916355 TCCCAGGAGGATGCAGTAC 58.084 57.895 0.00 0.00 40.93 2.73
3443 3506 0.753262 CCTCAACGTATCCCAGGAGG 59.247 60.000 0.00 0.00 36.33 4.30
3444 3507 1.137086 CACCTCAACGTATCCCAGGAG 59.863 57.143 0.00 0.00 0.00 3.69
3445 3508 1.191535 CACCTCAACGTATCCCAGGA 58.808 55.000 0.00 0.00 0.00 3.86
3446 3509 1.137086 CTCACCTCAACGTATCCCAGG 59.863 57.143 0.00 0.00 0.00 4.45
3447 3510 1.471676 GCTCACCTCAACGTATCCCAG 60.472 57.143 0.00 0.00 0.00 4.45
3448 3511 0.535335 GCTCACCTCAACGTATCCCA 59.465 55.000 0.00 0.00 0.00 4.37
3449 3512 0.824759 AGCTCACCTCAACGTATCCC 59.175 55.000 0.00 0.00 0.00 3.85
3450 3513 2.673368 CAAAGCTCACCTCAACGTATCC 59.327 50.000 0.00 0.00 0.00 2.59
3451 3514 2.673368 CCAAAGCTCACCTCAACGTATC 59.327 50.000 0.00 0.00 0.00 2.24
3452 3515 2.615493 CCCAAAGCTCACCTCAACGTAT 60.615 50.000 0.00 0.00 0.00 3.06
3453 3516 1.270625 CCCAAAGCTCACCTCAACGTA 60.271 52.381 0.00 0.00 0.00 3.57
3454 3517 0.535102 CCCAAAGCTCACCTCAACGT 60.535 55.000 0.00 0.00 0.00 3.99
3455 3518 0.535102 ACCCAAAGCTCACCTCAACG 60.535 55.000 0.00 0.00 0.00 4.10
3456 3519 0.954452 CACCCAAAGCTCACCTCAAC 59.046 55.000 0.00 0.00 0.00 3.18
3457 3520 0.550914 ACACCCAAAGCTCACCTCAA 59.449 50.000 0.00 0.00 0.00 3.02
3458 3521 1.429930 TACACCCAAAGCTCACCTCA 58.570 50.000 0.00 0.00 0.00 3.86
3459 3522 2.749621 CAATACACCCAAAGCTCACCTC 59.250 50.000 0.00 0.00 0.00 3.85
3460 3523 2.795329 CAATACACCCAAAGCTCACCT 58.205 47.619 0.00 0.00 0.00 4.00
3461 3524 1.202348 GCAATACACCCAAAGCTCACC 59.798 52.381 0.00 0.00 0.00 4.02
3462 3525 2.162681 AGCAATACACCCAAAGCTCAC 58.837 47.619 0.00 0.00 0.00 3.51
3463 3526 2.557924 CAAGCAATACACCCAAAGCTCA 59.442 45.455 0.00 0.00 0.00 4.26
3464 3527 2.819608 TCAAGCAATACACCCAAAGCTC 59.180 45.455 0.00 0.00 0.00 4.09
3526 3589 6.857964 GCTTGAATCATCTTTTTCTTTGACGA 59.142 34.615 0.00 0.00 0.00 4.20
3527 3590 6.183359 CGCTTGAATCATCTTTTTCTTTGACG 60.183 38.462 0.00 0.00 0.00 4.35
3533 3596 6.808008 TCTTCGCTTGAATCATCTTTTTCT 57.192 33.333 0.00 0.00 0.00 2.52
3534 3597 7.858052 TTTCTTCGCTTGAATCATCTTTTTC 57.142 32.000 0.00 0.00 0.00 2.29
3543 3606 5.502544 CGACCCTATTTTCTTCGCTTGAATC 60.503 44.000 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.