Multiple sequence alignment - TraesCS5D01G109700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G109700 chr5D 100.000 4222 0 0 1 4222 123889202 123884981 0.000000e+00 7797
1 TraesCS5D01G109700 chr5D 82.979 188 23 6 3660 3846 151671720 151671541 1.210000e-35 161
2 TraesCS5D01G109700 chr5A 95.085 4110 129 34 159 4222 137283267 137279185 0.000000e+00 6403
3 TraesCS5D01G109700 chr5A 96.855 159 4 1 1 159 246814445 246814288 9.000000e-67 265
4 TraesCS5D01G109700 chr5A 95.679 162 5 2 1 162 246805857 246805698 4.190000e-65 259
5 TraesCS5D01G109700 chr5A 84.483 174 21 3 3667 3840 585431607 585431774 2.610000e-37 167
6 TraesCS5D01G109700 chr5B 95.933 2385 74 10 1303 3671 136630567 136628190 0.000000e+00 3845
7 TraesCS5D01G109700 chr5B 92.991 1170 33 14 159 1306 136632043 136630901 0.000000e+00 1661
8 TraesCS5D01G109700 chr5B 89.578 403 11 7 3838 4222 136628191 136627802 2.280000e-132 483
9 TraesCS5D01G109700 chr2D 96.835 158 4 1 1 158 544931397 544931241 3.240000e-66 263
10 TraesCS5D01G109700 chr2D 94.340 159 8 1 1 159 544934539 544934382 4.220000e-60 243
11 TraesCS5D01G109700 chr2D 92.593 162 10 2 1 162 459045278 459045437 9.130000e-57 231
12 TraesCS5D01G109700 chr2D 88.489 139 10 5 991 1127 27780253 27780119 3.380000e-36 163
13 TraesCS5D01G109700 chr4D 95.570 158 6 1 1 158 297361470 297361314 7.010000e-63 252
14 TraesCS5D01G109700 chr4D 94.969 159 7 1 1 159 297366437 297366280 9.060000e-62 248
15 TraesCS5D01G109700 chr3D 94.340 159 8 1 1 159 550312124 550312281 4.220000e-60 243
16 TraesCS5D01G109700 chr3D 93.631 157 9 1 2 158 550341153 550341308 2.540000e-57 233
17 TraesCS5D01G109700 chr3D 84.211 133 18 3 1000 1129 604565903 604565771 4.430000e-25 126
18 TraesCS5D01G109700 chr6A 85.143 175 20 3 3667 3841 48520206 48520038 1.560000e-39 174
19 TraesCS5D01G109700 chr6A 84.324 185 21 5 3659 3842 594496529 594496706 1.560000e-39 174
20 TraesCS5D01G109700 chr6A 87.770 139 11 6 991 1127 167178418 167178552 1.570000e-34 158
21 TraesCS5D01G109700 chr3B 85.380 171 19 3 3670 3840 428703823 428703659 5.610000e-39 172
22 TraesCS5D01G109700 chr2B 82.297 209 21 13 940 1139 43676805 43676604 2.610000e-37 167
23 TraesCS5D01G109700 chr2A 87.417 151 11 7 991 1139 29885561 29885417 2.610000e-37 167
24 TraesCS5D01G109700 chr1D 84.571 175 19 5 3670 3843 473998939 473998772 2.610000e-37 167
25 TraesCS5D01G109700 chr1B 83.978 181 20 6 3663 3842 69844667 69844839 9.390000e-37 165
26 TraesCS5D01G109700 chr1B 84.483 174 19 6 3670 3841 412897413 412897580 9.390000e-37 165
27 TraesCS5D01G109700 chr3A 87.970 133 12 4 997 1127 42641032 42641162 2.030000e-33 154
28 TraesCS5D01G109700 chr3A 83.824 136 19 3 1000 1132 734443574 734443439 4.430000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G109700 chr5D 123884981 123889202 4221 True 7797.000000 7797 100.0000 1 4222 1 chr5D.!!$R1 4221
1 TraesCS5D01G109700 chr5A 137279185 137283267 4082 True 6403.000000 6403 95.0850 159 4222 1 chr5A.!!$R1 4063
2 TraesCS5D01G109700 chr5B 136627802 136632043 4241 True 1996.333333 3845 92.8340 159 4222 3 chr5B.!!$R1 4063
3 TraesCS5D01G109700 chr2D 544931241 544934539 3298 True 253.000000 263 95.5875 1 159 2 chr2D.!!$R2 158

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
658 3828 2.163613 GCGGGTCCAAGATTTTAGTTGG 59.836 50.000 0.00 0.0 44.08 3.77 F
2421 5948 1.381327 CTCCCCGGAGCAGGTTCTA 60.381 63.158 0.73 0.0 35.31 2.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2475 6002 0.323178 AATTGAGGAGTGCAGCTGGG 60.323 55.000 17.12 0.0 0.0 4.45 R
3224 6766 1.876156 GCCCAAGAACACAAGACTCTG 59.124 52.381 0.00 0.0 0.0 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 6.258068 ACGAAGGTTCACAAGAGAGTTAAAAG 59.742 38.462 0.00 0.00 0.00 2.27
71 72 5.354234 ACAGGCATCAACTTCTAATAAACCG 59.646 40.000 0.00 0.00 0.00 4.44
122 3265 4.922206 ACATCCATAACATCCGCCATAAT 58.078 39.130 0.00 0.00 0.00 1.28
336 3490 2.592102 ATGGCAAAGGACATCACACT 57.408 45.000 0.00 0.00 38.93 3.55
396 3551 3.348119 GGGTCAGAGTTTGAATCCTTCC 58.652 50.000 0.00 0.00 37.61 3.46
509 3667 3.941188 ACCACCTCACCACCGCAG 61.941 66.667 0.00 0.00 0.00 5.18
510 3668 3.941188 CCACCTCACCACCGCAGT 61.941 66.667 0.00 0.00 0.00 4.40
597 3767 3.023832 TGAGCTTCGATCTATGTGTCCA 58.976 45.455 0.00 0.00 0.00 4.02
658 3828 2.163613 GCGGGTCCAAGATTTTAGTTGG 59.836 50.000 0.00 0.00 44.08 3.77
727 3901 4.767255 CGCTGTGTGAGGAGGGGC 62.767 72.222 0.00 0.00 0.00 5.80
1135 4319 3.712907 GCGCCAGGTACCCTTCCA 61.713 66.667 8.74 0.00 0.00 3.53
1178 4363 4.008916 ACCTTCCTAGCTTCCTTCCATA 57.991 45.455 0.00 0.00 0.00 2.74
1179 4364 3.712218 ACCTTCCTAGCTTCCTTCCATAC 59.288 47.826 0.00 0.00 0.00 2.39
1186 4371 2.428890 AGCTTCCTTCCATACTCGACAG 59.571 50.000 0.00 0.00 0.00 3.51
1196 4381 9.794719 CCTTCCATACTCGACAGGATATATATA 57.205 37.037 0.00 0.00 0.00 0.86
1218 4403 4.300189 TGTTTAACGTCTGCAAGCAAAT 57.700 36.364 0.00 0.00 0.00 2.32
1245 4430 7.713073 TGTCCCAAATTAAGGTTGAACATTTTC 59.287 33.333 0.00 0.00 0.00 2.29
1395 4919 4.353777 AGCAACTGTACTTCCTGATAGGA 58.646 43.478 0.00 0.00 44.10 2.94
1396 4920 4.404073 AGCAACTGTACTTCCTGATAGGAG 59.596 45.833 0.00 0.00 46.73 3.69
1431 4955 4.336713 GGAAATACTGCAGGAGTTTCCATC 59.663 45.833 32.57 16.64 39.80 3.51
1444 4968 7.282224 CAGGAGTTTCCATCCGTATTAATTCAA 59.718 37.037 0.00 0.00 42.02 2.69
1541 5065 5.715439 TTGGTTCAGTGGGATGATAGAAT 57.285 39.130 0.00 0.00 0.00 2.40
1649 5175 4.340097 TGCCCTTCAAGATTCAATATGCAG 59.660 41.667 0.00 0.00 0.00 4.41
1666 5192 2.906389 TGCAGATGGAGTTAACAGGACT 59.094 45.455 8.61 0.00 0.00 3.85
1864 5390 3.674753 GCGCAAACAAAGATGCTTACAAT 59.325 39.130 0.30 0.00 40.39 2.71
2224 5751 2.415512 GGTACATTTGTCCTTCACTCGC 59.584 50.000 0.00 0.00 0.00 5.03
2357 5884 9.916397 GACATAACTACAACTTGTATGTATTGC 57.084 33.333 7.67 0.00 31.66 3.56
2421 5948 1.381327 CTCCCCGGAGCAGGTTCTA 60.381 63.158 0.73 0.00 35.31 2.10
2439 5966 6.716628 AGGTTCTACAATGCAATTCTGAAGAA 59.283 34.615 0.00 0.00 31.22 2.52
2524 6051 2.857592 GCTAATGGCTGATGTTGTGG 57.142 50.000 0.00 0.00 38.06 4.17
2525 6052 2.368439 GCTAATGGCTGATGTTGTGGA 58.632 47.619 0.00 0.00 38.06 4.02
2526 6053 2.754552 GCTAATGGCTGATGTTGTGGAA 59.245 45.455 0.00 0.00 38.06 3.53
2600 6130 4.194640 CCCAACATGACTCAGGTAATCAG 58.805 47.826 0.00 0.00 0.00 2.90
2601 6131 3.624861 CCAACATGACTCAGGTAATCAGC 59.375 47.826 0.00 0.00 0.00 4.26
2610 6141 6.379988 TGACTCAGGTAATCAGCACATTAGTA 59.620 38.462 0.00 0.00 0.00 1.82
2644 6175 5.359009 GGTAGCACATGTCTGTACTTACCTA 59.641 44.000 0.00 0.00 34.80 3.08
2657 6188 4.548451 ACTTACCTAACCTCCGGAAAAG 57.452 45.455 5.23 0.00 0.00 2.27
2662 6193 3.079578 CCTAACCTCCGGAAAAGGAAAC 58.920 50.000 14.84 0.00 40.25 2.78
2667 6199 1.880027 CTCCGGAAAAGGAAACACCAG 59.120 52.381 5.23 0.00 40.25 4.00
2668 6200 1.213430 TCCGGAAAAGGAAACACCAGT 59.787 47.619 0.00 0.00 42.04 4.00
2679 6211 1.555967 AACACCAGTTGGCAAGTTGT 58.444 45.000 4.45 5.32 39.32 3.32
2689 6222 2.580962 TGGCAAGTTGTCATTACTGCA 58.419 42.857 5.94 0.00 0.00 4.41
2706 6239 9.495754 CATTACTGCAGCTAATCTTTAAACTTC 57.504 33.333 15.27 0.00 0.00 3.01
2816 6349 1.851053 CTTCGAGAGCGTGATGATGTG 59.149 52.381 0.00 0.00 38.98 3.21
3013 6546 1.865865 TTCGACAGTGAACAGGAAGC 58.134 50.000 0.00 0.00 0.00 3.86
3224 6766 7.559590 AGGTGCAGAGTTATTGAAATGATAC 57.440 36.000 0.00 0.00 0.00 2.24
3259 6801 1.951209 TGGGCAGGTAGATCTTGTGA 58.049 50.000 0.00 0.00 0.00 3.58
3530 7073 5.876651 AATTTCTAATTCTTCATGGGGGC 57.123 39.130 0.00 0.00 0.00 5.80
3581 7124 3.797039 CCAGAATTTAGCGGTGAGATGA 58.203 45.455 0.00 0.00 0.00 2.92
3589 7138 2.447443 AGCGGTGAGATGACTTCAGTA 58.553 47.619 0.00 0.00 0.00 2.74
3644 7193 2.712466 GCGAAACACGTTGCTAAGTTTC 59.288 45.455 13.87 13.87 43.76 2.78
3686 7235 5.322754 TCAATATACTCCCTCCGTTCCTAG 58.677 45.833 0.00 0.00 0.00 3.02
3699 7248 6.071840 CCTCCGTTCCTAGATATAAGTCCTTG 60.072 46.154 0.00 0.00 0.00 3.61
3716 7265 8.472007 AAGTCCTTGTAGAGATTCCACTATAG 57.528 38.462 0.00 0.00 0.00 1.31
3717 7266 6.492087 AGTCCTTGTAGAGATTCCACTATAGC 59.508 42.308 0.00 0.00 0.00 2.97
3732 7281 5.353400 CCACTATAGCGACTACATTCGGATA 59.647 44.000 0.00 0.00 39.50 2.59
3739 7288 7.387119 AGCGACTACATTCGGATATATACAA 57.613 36.000 0.00 0.00 39.50 2.41
3740 7289 7.823665 AGCGACTACATTCGGATATATACAAA 58.176 34.615 0.00 0.00 39.50 2.83
3741 7290 7.754027 AGCGACTACATTCGGATATATACAAAC 59.246 37.037 0.00 0.00 39.50 2.93
3747 7297 6.708949 ACATTCGGATATATACAAACGCCTTT 59.291 34.615 0.00 0.00 0.00 3.11
3759 7309 5.425630 ACAAACGCCTTTTAGAGTATAGGG 58.574 41.667 0.00 0.00 0.00 3.53
3761 7311 5.688814 AACGCCTTTTAGAGTATAGGGTT 57.311 39.130 0.00 0.00 0.00 4.11
3762 7312 5.273674 ACGCCTTTTAGAGTATAGGGTTC 57.726 43.478 0.00 0.00 0.00 3.62
3763 7313 4.713321 ACGCCTTTTAGAGTATAGGGTTCA 59.287 41.667 0.00 0.00 0.00 3.18
3764 7314 5.048507 CGCCTTTTAGAGTATAGGGTTCAC 58.951 45.833 0.00 0.00 0.00 3.18
3766 7316 6.282167 GCCTTTTAGAGTATAGGGTTCACTC 58.718 44.000 0.00 0.00 39.19 3.51
3767 7317 6.127140 GCCTTTTAGAGTATAGGGTTCACTCA 60.127 42.308 4.01 0.00 40.94 3.41
3768 7318 7.419172 GCCTTTTAGAGTATAGGGTTCACTCAT 60.419 40.741 4.01 0.00 40.94 2.90
3769 7319 8.487028 CCTTTTAGAGTATAGGGTTCACTCATT 58.513 37.037 4.01 0.00 40.94 2.57
3770 7320 9.892130 CTTTTAGAGTATAGGGTTCACTCATTT 57.108 33.333 4.01 0.00 40.94 2.32
3771 7321 9.886132 TTTTAGAGTATAGGGTTCACTCATTTC 57.114 33.333 4.01 0.00 40.94 2.17
3780 7330 6.282930 AGGGTTCACTCATTTCATTTTGTTG 58.717 36.000 0.00 0.00 0.00 3.33
3795 7345 7.860613 TCATTTTGTTGTGTGTGTAGTCTATG 58.139 34.615 0.00 0.00 0.00 2.23
3890 7440 2.595238 AGTGGAGGTGTAGAACTCGTT 58.405 47.619 0.00 0.00 34.58 3.85
4053 7603 6.231211 ACGAAGTGGAAAAACTGTGATATCT 58.769 36.000 3.98 0.00 42.51 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 8.047310 TCTTCTTTTAACTCTCTTGTGAACCTT 58.953 33.333 0.00 0.00 0.00 3.50
16 17 7.565680 TCTTCTTTTAACTCTCTTGTGAACCT 58.434 34.615 0.00 0.00 0.00 3.50
21 22 8.655651 AACTCTCTTCTTTTAACTCTCTTGTG 57.344 34.615 0.00 0.00 0.00 3.33
37 38 4.826556 AGTTGATGCCTGTAACTCTCTTC 58.173 43.478 0.00 0.00 29.12 2.87
122 3265 5.685520 TTATGGCGGCTGTTATGGATATA 57.314 39.130 11.43 0.00 0.00 0.86
204 3354 3.932710 GACGCTGGAATTGATGTTACTCA 59.067 43.478 0.00 0.00 0.00 3.41
285 3435 8.344098 ACGTCACATTTAAAACGGAAGAAAATA 58.656 29.630 13.12 0.00 39.35 1.40
396 3551 1.094785 CGAGGTGCAAAAGGGTATGG 58.905 55.000 0.00 0.00 0.00 2.74
509 3667 3.616317 GCCCTTCTCTCTCTGTTTCTCAC 60.616 52.174 0.00 0.00 0.00 3.51
510 3668 2.564947 GCCCTTCTCTCTCTGTTTCTCA 59.435 50.000 0.00 0.00 0.00 3.27
597 3767 1.084370 CCTTTCGAAATCGCGGCTCT 61.084 55.000 11.70 0.00 39.60 4.09
640 3810 5.313712 TCACTCCAACTAAAATCTTGGACC 58.686 41.667 0.00 0.00 40.89 4.46
658 3828 0.392327 GCAGCTTTCTCCCCTCACTC 60.392 60.000 0.00 0.00 0.00 3.51
659 3829 1.682257 GCAGCTTTCTCCCCTCACT 59.318 57.895 0.00 0.00 0.00 3.41
660 3830 1.743252 CGCAGCTTTCTCCCCTCAC 60.743 63.158 0.00 0.00 0.00 3.51
661 3831 2.665000 CGCAGCTTTCTCCCCTCA 59.335 61.111 0.00 0.00 0.00 3.86
709 3883 4.767255 CCCCTCCTCACACAGCGC 62.767 72.222 0.00 0.00 0.00 5.92
727 3901 2.484287 ATCCTGGGTTGCTTCCACCG 62.484 60.000 0.00 0.00 0.00 4.94
1080 4264 0.959372 TCTCCACCTCGAACTCGACC 60.959 60.000 0.00 0.00 44.22 4.79
1196 4381 3.980646 TTGCTTGCAGACGTTAAACAT 57.019 38.095 0.00 0.00 0.00 2.71
1198 4383 4.502645 ACAATTTGCTTGCAGACGTTAAAC 59.497 37.500 0.00 0.00 38.50 2.01
1199 4384 4.677584 ACAATTTGCTTGCAGACGTTAAA 58.322 34.783 0.00 0.00 38.50 1.52
1200 4385 4.286910 GACAATTTGCTTGCAGACGTTAA 58.713 39.130 0.00 0.00 38.50 2.01
1201 4386 3.304391 GGACAATTTGCTTGCAGACGTTA 60.304 43.478 0.00 0.00 38.50 3.18
1202 4387 2.543653 GGACAATTTGCTTGCAGACGTT 60.544 45.455 0.00 0.00 38.50 3.99
1203 4388 1.001378 GGACAATTTGCTTGCAGACGT 60.001 47.619 0.00 0.00 38.50 4.34
1204 4389 1.666888 GGGACAATTTGCTTGCAGACG 60.667 52.381 0.00 0.00 38.50 4.18
1205 4390 1.340889 TGGGACAATTTGCTTGCAGAC 59.659 47.619 0.00 0.00 38.50 3.51
1245 4430 7.313646 TCCGTAGATTTTTCTCTACTTCACAG 58.686 38.462 8.99 0.00 43.56 3.66
1395 4919 7.178274 CCTGCAGTATTTCCAGATCTATCTACT 59.822 40.741 13.81 0.00 34.85 2.57
1396 4920 7.177568 TCCTGCAGTATTTCCAGATCTATCTAC 59.822 40.741 13.81 0.00 34.85 2.59
1416 4940 1.271856 TACGGATGGAAACTCCTGCA 58.728 50.000 0.00 0.00 37.46 4.41
1431 4955 6.753107 ACTGGGACTTTTGAATTAATACGG 57.247 37.500 0.00 0.00 0.00 4.02
1541 5065 9.581289 TTCCTTATGACATTTCCAGAAAAGTTA 57.419 29.630 2.86 0.00 33.09 2.24
1649 5175 7.878644 AGTTTTAGAAGTCCTGTTAACTCCATC 59.121 37.037 7.22 0.00 0.00 3.51
2005 5531 5.528690 TGGAGCAACTAATGACTAATGATGC 59.471 40.000 0.00 0.00 0.00 3.91
2357 5884 0.329261 TTCCCTGAACCATGCCTGAG 59.671 55.000 0.00 0.00 0.00 3.35
2439 5966 3.677424 GCGTCACAAGCTCTAGGAATTCT 60.677 47.826 5.23 0.00 0.00 2.40
2475 6002 0.323178 AATTGAGGAGTGCAGCTGGG 60.323 55.000 17.12 0.00 0.00 4.45
2524 6051 4.810191 TCTTGTTTAGCTCCTCCTCTTC 57.190 45.455 0.00 0.00 0.00 2.87
2525 6052 4.780021 TCATCTTGTTTAGCTCCTCCTCTT 59.220 41.667 0.00 0.00 0.00 2.85
2526 6053 4.357325 TCATCTTGTTTAGCTCCTCCTCT 58.643 43.478 0.00 0.00 0.00 3.69
2600 6130 3.947834 ACCCTGCAAGAATACTAATGTGC 59.052 43.478 0.00 0.00 34.07 4.57
2601 6131 5.237344 GCTACCCTGCAAGAATACTAATGTG 59.763 44.000 0.00 0.00 34.07 3.21
2610 6141 2.291153 ACATGTGCTACCCTGCAAGAAT 60.291 45.455 0.00 0.00 45.12 2.40
2644 6175 5.536462 TGGTGTTTCCTTTTCCGGAGGTT 62.536 47.826 3.34 0.00 43.07 3.50
2657 6188 1.111277 ACTTGCCAACTGGTGTTTCC 58.889 50.000 0.00 0.00 37.57 3.13
2662 6193 1.102154 TGACAACTTGCCAACTGGTG 58.898 50.000 0.00 0.00 37.57 4.17
2667 6199 3.243367 TGCAGTAATGACAACTTGCCAAC 60.243 43.478 0.00 0.00 0.00 3.77
2668 6200 2.954989 TGCAGTAATGACAACTTGCCAA 59.045 40.909 0.00 0.00 0.00 4.52
2679 6211 8.792830 AGTTTAAAGATTAGCTGCAGTAATGA 57.207 30.769 16.64 0.00 0.00 2.57
2706 6239 8.095792 AGGATCTGACATCTAGCATTCAATAAG 58.904 37.037 0.00 0.00 0.00 1.73
2712 6245 6.202570 GTCAAAGGATCTGACATCTAGCATTC 59.797 42.308 8.33 0.00 42.32 2.67
2716 6249 5.016051 TGTCAAAGGATCTGACATCTAGC 57.984 43.478 11.18 0.00 46.30 3.42
2816 6349 2.900716 GAGTGTAATCTCCAGGAGCC 57.099 55.000 12.26 0.23 0.00 4.70
2900 6433 3.607741 CTCACAGCTTCTGTCCATCATT 58.392 45.455 0.00 0.00 43.43 2.57
3013 6546 3.849951 CGGTGAGGGGATGGTCGG 61.850 72.222 0.00 0.00 0.00 4.79
3224 6766 1.876156 GCCCAAGAACACAAGACTCTG 59.124 52.381 0.00 0.00 0.00 3.35
3259 6801 6.784031 ACTCAATCCACCAGAGAGTAAAAAT 58.216 36.000 0.00 0.00 37.75 1.82
3572 7115 6.223852 TGAAAGTTACTGAAGTCATCTCACC 58.776 40.000 0.00 0.00 0.00 4.02
3581 7124 7.865706 AGTTGAACATGAAAGTTACTGAAGT 57.134 32.000 0.00 0.00 0.00 3.01
3589 7138 5.598005 TGGGATGAAGTTGAACATGAAAGTT 59.402 36.000 0.00 0.00 0.00 2.66
3686 7235 9.084533 AGTGGAATCTCTACAAGGACTTATATC 57.915 37.037 0.00 0.00 29.47 1.63
3699 7248 6.649973 TGTAGTCGCTATAGTGGAATCTCTAC 59.350 42.308 13.24 14.15 0.00 2.59
3716 7265 7.253223 CGTTTGTATATATCCGAATGTAGTCGC 60.253 40.741 0.00 0.00 39.74 5.19
3717 7266 7.253223 GCGTTTGTATATATCCGAATGTAGTCG 60.253 40.741 0.00 0.00 40.77 4.18
3732 7281 9.924650 CCTATACTCTAAAAGGCGTTTGTATAT 57.075 33.333 8.71 4.45 0.00 0.86
3739 7288 5.188359 TGAACCCTATACTCTAAAAGGCGTT 59.812 40.000 0.00 0.00 0.00 4.84
3740 7289 4.713321 TGAACCCTATACTCTAAAAGGCGT 59.287 41.667 0.00 0.00 0.00 5.68
3741 7290 5.048507 GTGAACCCTATACTCTAAAAGGCG 58.951 45.833 0.00 0.00 0.00 5.52
3747 7297 8.603898 TGAAATGAGTGAACCCTATACTCTAA 57.396 34.615 0.00 0.00 41.01 2.10
3759 7309 7.063308 ACACACAACAAAATGAAATGAGTGAAC 59.937 33.333 8.27 0.00 36.51 3.18
3761 7311 6.530887 CACACACAACAAAATGAAATGAGTGA 59.469 34.615 8.27 0.00 36.51 3.41
3762 7312 6.310956 ACACACACAACAAAATGAAATGAGTG 59.689 34.615 0.00 0.00 38.17 3.51
3763 7313 6.397272 ACACACACAACAAAATGAAATGAGT 58.603 32.000 0.00 0.00 0.00 3.41
3764 7314 6.890663 ACACACACAACAAAATGAAATGAG 57.109 33.333 0.00 0.00 0.00 2.90
3766 7316 7.701924 AGACTACACACACAACAAAATGAAATG 59.298 33.333 0.00 0.00 0.00 2.32
3767 7317 7.771183 AGACTACACACACAACAAAATGAAAT 58.229 30.769 0.00 0.00 0.00 2.17
3768 7318 7.151999 AGACTACACACACAACAAAATGAAA 57.848 32.000 0.00 0.00 0.00 2.69
3769 7319 6.751514 AGACTACACACACAACAAAATGAA 57.248 33.333 0.00 0.00 0.00 2.57
3770 7320 7.041440 CCATAGACTACACACACAACAAAATGA 60.041 37.037 0.00 0.00 0.00 2.57
3771 7321 7.077605 CCATAGACTACACACACAACAAAATG 58.922 38.462 0.00 0.00 0.00 2.32
3780 7330 4.530710 TTCCACCATAGACTACACACAC 57.469 45.455 0.00 0.00 0.00 3.82
3795 7345 4.828072 AAGTCCTTGTAGAGATTCCACC 57.172 45.455 0.00 0.00 0.00 4.61
4053 7603 4.410099 TCTTACGAGGGGAAAGTAACTGA 58.590 43.478 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.