Multiple sequence alignment - TraesCS5D01G109500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G109500 chr5D 100.000 5059 0 0 1 5059 123500581 123495523 0.000000e+00 9343.0
1 TraesCS5D01G109500 chr5D 90.400 375 33 2 4536 4910 1889244 1889615 1.640000e-134 490.0
2 TraesCS5D01G109500 chr5D 86.667 75 10 0 430 504 409881588 409881662 3.250000e-12 84.2
3 TraesCS5D01G109500 chr5B 95.406 3809 107 33 571 4321 136434612 136430814 0.000000e+00 6002.0
4 TraesCS5D01G109500 chr5B 89.744 507 42 7 1 504 136435269 136434770 1.540000e-179 640.0
5 TraesCS5D01G109500 chr5B 89.552 67 4 2 4931 4994 136421504 136421438 1.170000e-11 82.4
6 TraesCS5D01G109500 chr5A 96.206 3585 87 15 571 4108 136407444 136403862 0.000000e+00 5821.0
7 TraesCS5D01G109500 chr5A 91.772 474 29 9 4446 4916 445435005 445435471 0.000000e+00 651.0
8 TraesCS5D01G109500 chr5A 87.732 538 44 9 3 538 136408052 136407535 4.330000e-170 608.0
9 TraesCS5D01G109500 chr5A 87.991 458 47 5 4451 4905 585395470 585395922 7.460000e-148 534.0
10 TraesCS5D01G109500 chr5A 86.784 454 56 3 4460 4913 383457059 383457508 2.100000e-138 503.0
11 TraesCS5D01G109500 chr5A 98.639 147 2 0 4100 4246 136403471 136403325 1.400000e-65 261.0
12 TraesCS5D01G109500 chr5A 88.158 152 11 2 4907 5057 136403215 136403070 1.870000e-39 174.0
13 TraesCS5D01G109500 chr5A 94.681 94 4 1 4366 4459 136403299 136403207 1.470000e-30 145.0
14 TraesCS5D01G109500 chr5A 93.333 75 5 0 430 504 521009925 521009999 1.490000e-20 111.0
15 TraesCS5D01G109500 chr4B 87.225 454 50 6 4460 4909 379596670 379596221 1.260000e-140 510.0
16 TraesCS5D01G109500 chr4B 86.696 451 55 4 4460 4908 421554561 421554114 3.520000e-136 496.0
17 TraesCS5D01G109500 chr4B 95.000 60 3 0 436 495 484774442 484774501 1.500000e-15 95.3
18 TraesCS5D01G109500 chr3A 88.702 416 40 6 4458 4871 720440516 720440106 7.560000e-138 501.0
19 TraesCS5D01G109500 chr7D 86.534 453 53 6 4460 4907 50324461 50324910 4.550000e-135 492.0
20 TraesCS5D01G109500 chr7D 87.701 374 35 6 3288 3652 626385956 626385585 4.680000e-115 425.0
21 TraesCS5D01G109500 chr7D 82.618 466 44 16 2797 3254 626386393 626385957 1.330000e-100 377.0
22 TraesCS5D01G109500 chr7D 87.970 266 28 3 2379 2640 626387168 626386903 1.370000e-80 311.0
23 TraesCS5D01G109500 chr2D 85.651 453 54 9 4460 4906 445057197 445056750 2.760000e-127 466.0
24 TraesCS5D01G109500 chr2B 88.889 108 12 0 2379 2486 52916212 52916319 3.180000e-27 134.0
25 TraesCS5D01G109500 chr4D 95.000 60 3 0 436 495 394490031 394490090 1.500000e-15 95.3
26 TraesCS5D01G109500 chr4A 96.000 50 2 0 446 495 75973176 75973225 1.170000e-11 82.4
27 TraesCS5D01G109500 chr2A 83.750 80 5 4 417 495 87879372 87879444 9.090000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G109500 chr5D 123495523 123500581 5058 True 9343.0 9343 100.000000 1 5059 1 chr5D.!!$R1 5058
1 TraesCS5D01G109500 chr5B 136430814 136435269 4455 True 3321.0 6002 92.575000 1 4321 2 chr5B.!!$R2 4320
2 TraesCS5D01G109500 chr5A 136403070 136408052 4982 True 1401.8 5821 93.083200 3 5057 5 chr5A.!!$R1 5054
3 TraesCS5D01G109500 chr7D 626385585 626387168 1583 True 371.0 425 86.096333 2379 3652 3 chr7D.!!$R1 1273

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
498 501 0.962855 CTCGAGTCCTGAGTGGCTCA 60.963 60.000 3.62 0.0 38.22 4.26 F
1128 1249 1.001974 GCCATGGGGTTCTTGTTTTCC 59.998 52.381 15.13 0.0 36.17 3.13 F
2679 2872 0.668535 GCAAACAGAGAAAAGCCGGT 59.331 50.000 1.90 0.0 0.00 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1395 1516 2.151202 ACGTGTCCATGACAAATGGTC 58.849 47.619 0.00 0.0 44.49 4.02 R
2994 3522 3.393278 TGTTAGACAGGCCAACTAAAGGT 59.607 43.478 5.01 0.0 0.00 3.50 R
4562 5525 0.107410 TCCGCAACAAGACCTGTGTT 60.107 50.000 0.00 0.0 38.67 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.389374 TGTAGCTTAGCAAAGATATGGGC 58.611 43.478 7.07 0.00 36.10 5.36
35 36 3.160269 GCAAAGATATGGGCCTTAGCAT 58.840 45.455 15.94 2.20 42.56 3.79
49 50 3.503363 CCTTAGCATGTTTCTCTGCACAA 59.497 43.478 0.00 0.00 40.88 3.33
75 76 5.398603 AATTAATGTTTTGATCCGGTGCA 57.601 34.783 0.00 0.00 0.00 4.57
77 78 3.508744 AATGTTTTGATCCGGTGCATC 57.491 42.857 0.00 0.00 0.00 3.91
80 81 2.487762 TGTTTTGATCCGGTGCATCTTC 59.512 45.455 0.00 0.00 0.00 2.87
90 91 3.313526 CCGGTGCATCTTCTTTTCCTATG 59.686 47.826 0.00 0.00 0.00 2.23
102 103 9.014297 TCTTCTTTTCCTATGTTTTCCTCATTC 57.986 33.333 0.00 0.00 0.00 2.67
111 112 4.389374 TGTTTTCCTCATTCGCTCTTCTT 58.611 39.130 0.00 0.00 0.00 2.52
151 152 9.999009 CAATATTAAGATGCATATGTGATCCAC 57.001 33.333 0.00 0.00 34.56 4.02
164 165 4.647611 TGTGATCCACAAACCTTATTCGT 58.352 39.130 0.00 0.00 41.69 3.85
221 222 4.554526 CGCAGCATCACTTAGAAACAACAA 60.555 41.667 0.00 0.00 0.00 2.83
222 223 5.464168 GCAGCATCACTTAGAAACAACAAT 58.536 37.500 0.00 0.00 0.00 2.71
237 238 8.196771 AGAAACAACAATTAAGAGACAATGCAA 58.803 29.630 0.00 0.00 0.00 4.08
239 240 9.979578 AAACAACAATTAAGAGACAATGCAATA 57.020 25.926 0.00 0.00 0.00 1.90
402 403 4.330074 AGGATGCGTTAAAGAAAGATGACG 59.670 41.667 0.00 0.00 0.00 4.35
423 424 9.981114 ATGACGTCTCATATAATGTATTGTTGA 57.019 29.630 17.92 0.00 35.17 3.18
424 425 9.463443 TGACGTCTCATATAATGTATTGTTGAG 57.537 33.333 17.92 0.00 0.00 3.02
498 501 0.962855 CTCGAGTCCTGAGTGGCTCA 60.963 60.000 3.62 0.00 38.22 4.26
504 544 1.077930 CCTGAGTGGCTCATGGTGG 60.078 63.158 0.00 0.00 39.92 4.61
610 715 7.428282 TGTTCAGATTATCTTACGCACAAAA 57.572 32.000 0.00 0.00 0.00 2.44
921 1036 4.658786 AACCCGCCCACCTCTCCT 62.659 66.667 0.00 0.00 0.00 3.69
1078 1199 3.304123 CGTTGATTCTTGCGGTGGTTTTA 60.304 43.478 0.00 0.00 0.00 1.52
1128 1249 1.001974 GCCATGGGGTTCTTGTTTTCC 59.998 52.381 15.13 0.00 36.17 3.13
1129 1250 2.608623 CCATGGGGTTCTTGTTTTCCT 58.391 47.619 2.85 0.00 0.00 3.36
1151 1272 4.568152 TTAGCCAACTTTGAGTTCTTGC 57.432 40.909 0.00 0.00 36.03 4.01
1162 1283 3.596214 TGAGTTCTTGCGAGGATTTACC 58.404 45.455 0.00 0.00 39.35 2.85
1208 1329 6.369065 GGATTATGCTTAGGATTAGTTCGTGG 59.631 42.308 0.00 0.00 0.00 4.94
1229 1350 2.746472 GCTGGATCGGCCTTGATAAACT 60.746 50.000 0.00 0.00 37.63 2.66
1237 1358 1.679032 GCCTTGATAAACTGCGTCCCT 60.679 52.381 0.00 0.00 0.00 4.20
1241 1362 4.098960 CCTTGATAAACTGCGTCCCTACTA 59.901 45.833 0.00 0.00 0.00 1.82
1350 1471 1.808945 GAGCATCTTGTTGACACTGGG 59.191 52.381 0.00 0.00 0.00 4.45
1368 1489 1.745653 GGGAATTTCAAGGCGAAGAGG 59.254 52.381 0.00 0.00 34.32 3.69
1373 1494 3.417069 TTTCAAGGCGAAGAGGAATCA 57.583 42.857 0.00 0.00 34.32 2.57
1395 1516 6.946165 TCATTTGCACTGCTAAATTTTGTTG 58.054 32.000 1.98 0.00 0.00 3.33
2285 2414 5.462530 TGTAGAACTCAAACGAGGAATCA 57.537 39.130 0.00 0.00 34.60 2.57
2288 2417 6.764085 TGTAGAACTCAAACGAGGAATCAAAA 59.236 34.615 0.00 0.00 34.60 2.44
2289 2418 6.693315 AGAACTCAAACGAGGAATCAAAAA 57.307 33.333 0.00 0.00 34.60 1.94
2509 2664 5.124457 TCAGCAATTGAATAAAGAGGTGAGC 59.876 40.000 10.34 0.00 32.51 4.26
2679 2872 0.668535 GCAAACAGAGAAAAGCCGGT 59.331 50.000 1.90 0.00 0.00 5.28
3541 4085 4.092383 GCAATGCATGTTTTGACCTGAATC 59.908 41.667 0.00 0.00 0.00 2.52
3552 4096 2.573009 TGACCTGAATCTCCTGCATTCA 59.427 45.455 0.14 0.14 37.82 2.57
3596 4140 1.703014 ATCCAGGAGCGGCATGACAT 61.703 55.000 0.00 0.00 0.00 3.06
3845 4389 7.871853 TCTTTTCCAGCATTGTAGTACTTTTC 58.128 34.615 0.00 0.00 0.00 2.29
4067 4613 3.258372 GGGCAAAGAAGTAGGGAAAAAGG 59.742 47.826 0.00 0.00 0.00 3.11
4249 5206 8.915654 GTTCGAATAACAAAATTCAGCTTGATT 58.084 29.630 0.00 0.00 35.93 2.57
4262 5222 7.692460 TTCAGCTTGATTATGTGATTGTCTT 57.308 32.000 0.00 0.00 0.00 3.01
4265 5225 7.609146 TCAGCTTGATTATGTGATTGTCTTTCT 59.391 33.333 0.00 0.00 0.00 2.52
4314 5277 5.679638 GGCCACAATGAGTGTCCATTATTTC 60.680 44.000 0.00 0.00 45.55 2.17
4321 5284 4.929211 TGAGTGTCCATTATTTCTGTCGTG 59.071 41.667 0.00 0.00 0.00 4.35
4322 5285 5.147330 AGTGTCCATTATTTCTGTCGTGA 57.853 39.130 0.00 0.00 0.00 4.35
4323 5286 4.929808 AGTGTCCATTATTTCTGTCGTGAC 59.070 41.667 0.00 0.00 0.00 3.67
4324 5287 4.092968 GTGTCCATTATTTCTGTCGTGACC 59.907 45.833 0.00 0.00 0.00 4.02
4325 5288 4.250464 GTCCATTATTTCTGTCGTGACCA 58.750 43.478 0.00 0.00 0.00 4.02
4326 5289 4.876107 GTCCATTATTTCTGTCGTGACCAT 59.124 41.667 0.00 0.00 0.00 3.55
4327 5290 4.875536 TCCATTATTTCTGTCGTGACCATG 59.124 41.667 0.00 0.00 0.00 3.66
4328 5291 4.875536 CCATTATTTCTGTCGTGACCATGA 59.124 41.667 0.00 0.00 0.00 3.07
4329 5292 5.528690 CCATTATTTCTGTCGTGACCATGAT 59.471 40.000 0.00 0.00 0.00 2.45
4330 5293 6.293081 CCATTATTTCTGTCGTGACCATGATC 60.293 42.308 0.00 0.00 0.00 2.92
4331 5294 3.676291 TTTCTGTCGTGACCATGATCA 57.324 42.857 0.00 0.00 0.00 2.92
4332 5295 3.893326 TTCTGTCGTGACCATGATCAT 57.107 42.857 1.18 1.18 0.00 2.45
4333 5296 5.337578 TTTCTGTCGTGACCATGATCATA 57.662 39.130 8.15 0.00 0.00 2.15
4334 5297 4.307443 TCTGTCGTGACCATGATCATAC 57.693 45.455 8.15 1.93 0.00 2.39
4335 5298 3.045688 CTGTCGTGACCATGATCATACG 58.954 50.000 18.42 18.42 0.00 3.06
4336 5299 2.685897 TGTCGTGACCATGATCATACGA 59.314 45.455 21.63 21.63 0.00 3.43
4337 5300 3.243068 TGTCGTGACCATGATCATACGAG 60.243 47.826 24.55 10.85 30.51 4.18
4338 5301 3.003378 GTCGTGACCATGATCATACGAGA 59.997 47.826 24.55 11.09 30.51 4.04
4339 5302 3.821033 TCGTGACCATGATCATACGAGAT 59.179 43.478 21.63 0.00 0.00 2.75
4340 5303 5.001232 TCGTGACCATGATCATACGAGATA 58.999 41.667 21.63 5.79 0.00 1.98
4341 5304 5.648092 TCGTGACCATGATCATACGAGATAT 59.352 40.000 21.63 0.00 0.00 1.63
4342 5305 5.968261 CGTGACCATGATCATACGAGATATC 59.032 44.000 19.35 0.00 0.00 1.63
4343 5306 6.403636 CGTGACCATGATCATACGAGATATCA 60.404 42.308 19.35 7.69 33.20 2.15
4344 5307 6.749578 GTGACCATGATCATACGAGATATCAC 59.250 42.308 8.15 9.28 31.56 3.06
4345 5308 5.884771 ACCATGATCATACGAGATATCACG 58.115 41.667 19.15 19.15 31.56 4.35
4346 5309 4.737279 CCATGATCATACGAGATATCACGC 59.263 45.833 20.41 5.72 31.56 5.34
4347 5310 5.449725 CCATGATCATACGAGATATCACGCT 60.450 44.000 20.41 11.33 31.56 5.07
4348 5311 4.974591 TGATCATACGAGATATCACGCTG 58.025 43.478 20.41 17.38 33.30 5.18
4349 5312 4.695455 TGATCATACGAGATATCACGCTGA 59.305 41.667 20.41 21.12 33.30 4.26
4350 5313 4.406001 TCATACGAGATATCACGCTGAC 57.594 45.455 20.41 0.00 33.30 3.51
4351 5314 4.065789 TCATACGAGATATCACGCTGACT 58.934 43.478 20.41 5.35 33.30 3.41
4352 5315 2.765108 ACGAGATATCACGCTGACTG 57.235 50.000 20.41 0.00 33.30 3.51
4353 5316 2.017782 ACGAGATATCACGCTGACTGT 58.982 47.619 20.41 0.00 33.30 3.55
4354 5317 3.203716 ACGAGATATCACGCTGACTGTA 58.796 45.455 20.41 0.00 33.30 2.74
4355 5318 3.248841 ACGAGATATCACGCTGACTGTAG 59.751 47.826 20.41 0.00 33.30 2.74
4356 5319 3.495001 CGAGATATCACGCTGACTGTAGA 59.505 47.826 9.61 0.00 0.00 2.59
4357 5320 4.024809 CGAGATATCACGCTGACTGTAGAA 60.025 45.833 9.61 0.00 0.00 2.10
4358 5321 5.431420 AGATATCACGCTGACTGTAGAAG 57.569 43.478 5.32 0.00 0.00 2.85
4359 5322 5.126779 AGATATCACGCTGACTGTAGAAGA 58.873 41.667 5.32 0.00 0.00 2.87
4360 5323 5.590663 AGATATCACGCTGACTGTAGAAGAA 59.409 40.000 5.32 0.00 0.00 2.52
4361 5324 3.560902 TCACGCTGACTGTAGAAGAAG 57.439 47.619 0.00 0.00 0.00 2.85
4362 5325 3.146847 TCACGCTGACTGTAGAAGAAGA 58.853 45.455 0.00 0.00 0.00 2.87
4363 5326 3.189495 TCACGCTGACTGTAGAAGAAGAG 59.811 47.826 0.00 0.00 0.00 2.85
4364 5327 3.189495 CACGCTGACTGTAGAAGAAGAGA 59.811 47.826 0.00 0.00 0.00 3.10
4365 5328 3.821600 ACGCTGACTGTAGAAGAAGAGAA 59.178 43.478 0.00 0.00 0.00 2.87
4366 5329 4.278669 ACGCTGACTGTAGAAGAAGAGAAA 59.721 41.667 0.00 0.00 0.00 2.52
4367 5330 4.619336 CGCTGACTGTAGAAGAAGAGAAAC 59.381 45.833 0.00 0.00 0.00 2.78
4368 5331 4.619336 GCTGACTGTAGAAGAAGAGAAACG 59.381 45.833 0.00 0.00 0.00 3.60
4369 5332 5.122512 TGACTGTAGAAGAAGAGAAACGG 57.877 43.478 0.00 0.00 0.00 4.44
4370 5333 4.825634 TGACTGTAGAAGAAGAGAAACGGA 59.174 41.667 0.00 0.00 0.00 4.69
4371 5334 5.301045 TGACTGTAGAAGAAGAGAAACGGAA 59.699 40.000 0.00 0.00 0.00 4.30
4372 5335 6.015350 TGACTGTAGAAGAAGAGAAACGGAAT 60.015 38.462 0.00 0.00 0.00 3.01
4373 5336 6.159988 ACTGTAGAAGAAGAGAAACGGAATG 58.840 40.000 0.00 0.00 0.00 2.67
4374 5337 6.097915 TGTAGAAGAAGAGAAACGGAATGT 57.902 37.500 0.00 0.00 0.00 2.71
4375 5338 6.157211 TGTAGAAGAAGAGAAACGGAATGTC 58.843 40.000 0.00 0.00 0.00 3.06
4392 5355 1.810151 TGTCATTCTAAGCCGCCAAAC 59.190 47.619 0.00 0.00 0.00 2.93
4464 5427 9.758651 CTTTTATACACAATTTATTAAGGGGCC 57.241 33.333 0.00 0.00 0.00 5.80
4465 5428 9.495382 TTTTATACACAATTTATTAAGGGGCCT 57.505 29.630 0.84 0.00 0.00 5.19
4466 5429 6.976934 ATACACAATTTATTAAGGGGCCTG 57.023 37.500 0.84 0.00 0.00 4.85
4467 5430 3.450817 ACACAATTTATTAAGGGGCCTGC 59.549 43.478 0.84 0.00 0.00 4.85
4468 5431 3.706086 CACAATTTATTAAGGGGCCTGCT 59.294 43.478 0.84 0.00 0.00 4.24
4469 5432 4.892934 CACAATTTATTAAGGGGCCTGCTA 59.107 41.667 0.84 0.00 0.00 3.49
4470 5433 4.893524 ACAATTTATTAAGGGGCCTGCTAC 59.106 41.667 0.84 0.00 0.00 3.58
4471 5434 2.922740 TTATTAAGGGGCCTGCTACG 57.077 50.000 0.84 0.00 0.00 3.51
4472 5435 0.395312 TATTAAGGGGCCTGCTACGC 59.605 55.000 0.84 0.00 0.00 4.42
4473 5436 2.660258 ATTAAGGGGCCTGCTACGCG 62.660 60.000 3.53 3.53 0.00 6.01
4488 5451 4.664677 GCGTCCGCCGGCTGATAT 62.665 66.667 26.68 0.00 36.94 1.63
4489 5452 2.029073 CGTCCGCCGGCTGATATT 59.971 61.111 26.68 0.00 0.00 1.28
4490 5453 1.594293 CGTCCGCCGGCTGATATTT 60.594 57.895 26.68 0.00 0.00 1.40
4491 5454 1.157870 CGTCCGCCGGCTGATATTTT 61.158 55.000 26.68 0.00 0.00 1.82
4492 5455 1.021968 GTCCGCCGGCTGATATTTTT 58.978 50.000 26.68 0.00 0.00 1.94
4493 5456 1.021202 TCCGCCGGCTGATATTTTTG 58.979 50.000 26.68 4.04 0.00 2.44
4494 5457 1.021202 CCGCCGGCTGATATTTTTGA 58.979 50.000 26.68 0.00 0.00 2.69
4495 5458 1.403679 CCGCCGGCTGATATTTTTGAA 59.596 47.619 26.68 0.00 0.00 2.69
4496 5459 2.159310 CCGCCGGCTGATATTTTTGAAA 60.159 45.455 26.68 0.00 0.00 2.69
4497 5460 3.108144 CGCCGGCTGATATTTTTGAAAG 58.892 45.455 26.68 0.00 0.00 2.62
4498 5461 3.181501 CGCCGGCTGATATTTTTGAAAGA 60.182 43.478 26.68 0.00 0.00 2.52
4499 5462 4.498009 CGCCGGCTGATATTTTTGAAAGAT 60.498 41.667 26.68 0.00 0.00 2.40
4500 5463 5.351458 GCCGGCTGATATTTTTGAAAGATT 58.649 37.500 22.15 0.00 0.00 2.40
4501 5464 6.503524 GCCGGCTGATATTTTTGAAAGATTA 58.496 36.000 22.15 0.00 0.00 1.75
4502 5465 6.638468 GCCGGCTGATATTTTTGAAAGATTAG 59.362 38.462 22.15 0.00 0.00 1.73
4503 5466 6.638468 CCGGCTGATATTTTTGAAAGATTAGC 59.362 38.462 13.20 13.20 30.60 3.09
4504 5467 6.638468 CGGCTGATATTTTTGAAAGATTAGCC 59.362 38.462 23.12 23.12 39.19 3.93
4505 5468 6.638468 GGCTGATATTTTTGAAAGATTAGCCG 59.362 38.462 20.52 0.00 36.29 5.52
4506 5469 6.638468 GCTGATATTTTTGAAAGATTAGCCGG 59.362 38.462 11.44 0.00 0.00 6.13
4507 5470 6.503524 TGATATTTTTGAAAGATTAGCCGGC 58.496 36.000 21.89 21.89 0.00 6.13
4508 5471 6.321181 TGATATTTTTGAAAGATTAGCCGGCT 59.679 34.615 34.85 34.85 0.00 5.52
4509 5472 4.434713 TTTTTGAAAGATTAGCCGGCTC 57.565 40.909 36.73 20.21 0.00 4.70
4510 5473 1.651987 TTGAAAGATTAGCCGGCTCG 58.348 50.000 36.73 0.00 0.00 5.03
4511 5474 0.810031 TGAAAGATTAGCCGGCTCGC 60.810 55.000 36.73 23.03 0.00 5.03
4512 5475 1.822250 GAAAGATTAGCCGGCTCGCG 61.822 60.000 36.73 0.00 0.00 5.87
4513 5476 2.292794 AAAGATTAGCCGGCTCGCGA 62.293 55.000 36.73 18.22 0.00 5.87
4514 5477 2.685387 AAGATTAGCCGGCTCGCGAG 62.685 60.000 36.73 31.37 0.00 5.03
4524 5487 4.746361 CTCGCGAGCCATCAGATT 57.254 55.556 25.07 0.00 0.00 2.40
4525 5488 2.223509 CTCGCGAGCCATCAGATTG 58.776 57.895 25.07 0.00 0.00 2.67
4526 5489 1.829349 CTCGCGAGCCATCAGATTGC 61.829 60.000 25.07 0.00 0.00 3.56
4527 5490 2.890109 CGCGAGCCATCAGATTGCC 61.890 63.158 0.00 0.00 0.00 4.52
4528 5491 2.890109 GCGAGCCATCAGATTGCCG 61.890 63.158 2.80 7.67 0.00 5.69
4529 5492 2.890109 CGAGCCATCAGATTGCCGC 61.890 63.158 2.80 0.00 0.00 6.53
4530 5493 1.820906 GAGCCATCAGATTGCCGCA 60.821 57.895 2.80 0.00 0.00 5.69
4531 5494 1.152819 AGCCATCAGATTGCCGCAT 60.153 52.632 2.80 0.00 0.00 4.73
4532 5495 1.170919 AGCCATCAGATTGCCGCATC 61.171 55.000 2.80 0.00 0.00 3.91
4533 5496 1.449726 GCCATCAGATTGCCGCATCA 61.450 55.000 0.00 0.00 0.00 3.07
4534 5497 0.591659 CCATCAGATTGCCGCATCAG 59.408 55.000 0.00 0.00 0.00 2.90
4535 5498 0.591659 CATCAGATTGCCGCATCAGG 59.408 55.000 0.00 0.00 0.00 3.86
4545 5508 3.885521 GCATCAGGCGAGCCAAGC 61.886 66.667 17.18 10.16 38.92 4.01
4546 5509 3.570638 CATCAGGCGAGCCAAGCG 61.571 66.667 17.18 1.92 38.92 4.68
4547 5510 4.087892 ATCAGGCGAGCCAAGCGT 62.088 61.111 17.18 0.00 38.92 5.07
4554 5517 4.704833 GAGCCAAGCGTGCCTCCA 62.705 66.667 0.00 0.00 0.00 3.86
4555 5518 4.711949 AGCCAAGCGTGCCTCCAG 62.712 66.667 0.00 0.00 0.00 3.86
4556 5519 4.704833 GCCAAGCGTGCCTCCAGA 62.705 66.667 0.00 0.00 0.00 3.86
4557 5520 2.032528 CCAAGCGTGCCTCCAGAA 59.967 61.111 0.00 0.00 0.00 3.02
4558 5521 2.328099 CCAAGCGTGCCTCCAGAAC 61.328 63.158 0.00 0.00 0.00 3.01
4559 5522 1.302033 CAAGCGTGCCTCCAGAACT 60.302 57.895 0.00 0.00 0.00 3.01
4560 5523 0.886490 CAAGCGTGCCTCCAGAACTT 60.886 55.000 0.00 0.00 0.00 2.66
4561 5524 0.603975 AAGCGTGCCTCCAGAACTTC 60.604 55.000 0.00 0.00 0.00 3.01
4562 5525 1.301716 GCGTGCCTCCAGAACTTCA 60.302 57.895 0.00 0.00 0.00 3.02
4563 5526 0.884704 GCGTGCCTCCAGAACTTCAA 60.885 55.000 0.00 0.00 0.00 2.69
4564 5527 0.868406 CGTGCCTCCAGAACTTCAAC 59.132 55.000 0.00 0.00 0.00 3.18
4565 5528 1.810031 CGTGCCTCCAGAACTTCAACA 60.810 52.381 0.00 0.00 0.00 3.33
4566 5529 1.604278 GTGCCTCCAGAACTTCAACAC 59.396 52.381 0.00 0.00 0.00 3.32
4567 5530 1.211703 TGCCTCCAGAACTTCAACACA 59.788 47.619 0.00 0.00 0.00 3.72
4568 5531 1.876156 GCCTCCAGAACTTCAACACAG 59.124 52.381 0.00 0.00 0.00 3.66
4569 5532 2.498167 CCTCCAGAACTTCAACACAGG 58.502 52.381 0.00 0.00 0.00 4.00
4570 5533 2.158755 CCTCCAGAACTTCAACACAGGT 60.159 50.000 0.00 0.00 0.00 4.00
4571 5534 3.134458 CTCCAGAACTTCAACACAGGTC 58.866 50.000 0.00 0.00 0.00 3.85
4572 5535 2.771943 TCCAGAACTTCAACACAGGTCT 59.228 45.455 0.00 0.00 39.01 3.85
4573 5536 3.199946 TCCAGAACTTCAACACAGGTCTT 59.800 43.478 0.00 0.00 36.06 3.01
4574 5537 3.313526 CCAGAACTTCAACACAGGTCTTG 59.686 47.826 0.00 0.00 36.06 3.02
4575 5538 3.941483 CAGAACTTCAACACAGGTCTTGT 59.059 43.478 0.00 0.00 36.06 3.16
4576 5539 4.396166 CAGAACTTCAACACAGGTCTTGTT 59.604 41.667 0.00 0.00 36.06 2.83
4579 5542 3.532138 CAACACAGGTCTTGTTGCG 57.468 52.632 2.50 0.00 45.36 4.85
4580 5543 0.029300 CAACACAGGTCTTGTTGCGG 59.971 55.000 2.50 0.00 45.36 5.69
4581 5544 0.107410 AACACAGGTCTTGTTGCGGA 60.107 50.000 0.00 0.00 38.16 5.54
4582 5545 0.107410 ACACAGGTCTTGTTGCGGAA 60.107 50.000 0.00 0.00 38.16 4.30
4583 5546 1.238439 CACAGGTCTTGTTGCGGAAT 58.762 50.000 0.00 0.00 38.16 3.01
4584 5547 1.608590 CACAGGTCTTGTTGCGGAATT 59.391 47.619 0.00 0.00 38.16 2.17
4585 5548 2.811431 CACAGGTCTTGTTGCGGAATTA 59.189 45.455 0.00 0.00 38.16 1.40
4586 5549 3.440173 CACAGGTCTTGTTGCGGAATTAT 59.560 43.478 0.00 0.00 38.16 1.28
4587 5550 4.079253 ACAGGTCTTGTTGCGGAATTATT 58.921 39.130 0.00 0.00 36.31 1.40
4588 5551 4.522789 ACAGGTCTTGTTGCGGAATTATTT 59.477 37.500 0.00 0.00 36.31 1.40
4589 5552 5.095490 CAGGTCTTGTTGCGGAATTATTTC 58.905 41.667 0.00 0.00 0.00 2.17
4590 5553 5.010282 AGGTCTTGTTGCGGAATTATTTCT 58.990 37.500 0.00 0.00 32.16 2.52
4591 5554 5.095490 GGTCTTGTTGCGGAATTATTTCTG 58.905 41.667 0.00 2.40 40.60 3.02
4592 5555 5.335661 GGTCTTGTTGCGGAATTATTTCTGT 60.336 40.000 0.00 0.00 39.92 3.41
4593 5556 6.128117 GGTCTTGTTGCGGAATTATTTCTGTA 60.128 38.462 0.00 1.34 39.92 2.74
4594 5557 7.302524 GTCTTGTTGCGGAATTATTTCTGTAA 58.697 34.615 0.00 5.83 39.56 2.41
4600 5563 7.490962 TGCGGAATTATTTCTGTAACATAGG 57.509 36.000 7.76 0.00 39.92 2.57
4601 5564 7.051623 TGCGGAATTATTTCTGTAACATAGGT 58.948 34.615 7.76 0.00 39.92 3.08
4602 5565 7.225931 TGCGGAATTATTTCTGTAACATAGGTC 59.774 37.037 7.76 0.00 39.92 3.85
4603 5566 7.441458 GCGGAATTATTTCTGTAACATAGGTCT 59.559 37.037 7.76 0.00 39.92 3.85
4604 5567 9.326413 CGGAATTATTTCTGTAACATAGGTCTT 57.674 33.333 0.00 0.00 34.14 3.01
4608 5571 8.697846 TTATTTCTGTAACATAGGTCTTGTCG 57.302 34.615 0.00 0.00 0.00 4.35
4609 5572 5.717078 TTCTGTAACATAGGTCTTGTCGT 57.283 39.130 0.00 0.00 0.00 4.34
4610 5573 6.822667 TTCTGTAACATAGGTCTTGTCGTA 57.177 37.500 0.00 0.00 0.00 3.43
4611 5574 6.432607 TCTGTAACATAGGTCTTGTCGTAG 57.567 41.667 0.00 0.00 0.00 3.51
4612 5575 6.175471 TCTGTAACATAGGTCTTGTCGTAGA 58.825 40.000 0.00 0.00 0.00 2.59
4613 5576 6.656270 TCTGTAACATAGGTCTTGTCGTAGAA 59.344 38.462 0.00 0.00 39.69 2.10
4614 5577 7.338703 TCTGTAACATAGGTCTTGTCGTAGAAT 59.661 37.037 0.00 0.00 39.69 2.40
4615 5578 7.833786 TGTAACATAGGTCTTGTCGTAGAATT 58.166 34.615 0.00 0.00 39.69 2.17
4616 5579 8.308931 TGTAACATAGGTCTTGTCGTAGAATTT 58.691 33.333 0.00 0.00 39.69 1.82
4617 5580 9.148104 GTAACATAGGTCTTGTCGTAGAATTTT 57.852 33.333 0.00 0.00 39.69 1.82
4618 5581 8.617290 AACATAGGTCTTGTCGTAGAATTTTT 57.383 30.769 0.00 0.00 39.69 1.94
4636 5599 2.645730 TTTTGCAGCGACTGTTTTGT 57.354 40.000 8.32 0.00 33.43 2.83
4637 5600 2.187351 TTTGCAGCGACTGTTTTGTC 57.813 45.000 8.32 0.00 33.43 3.18
4692 5655 4.637483 TTTTTCTGCAACTGAGGTCTTG 57.363 40.909 0.00 0.00 0.00 3.02
4693 5656 2.260844 TTCTGCAACTGAGGTCTTGG 57.739 50.000 0.00 0.00 0.00 3.61
4694 5657 1.131638 TCTGCAACTGAGGTCTTGGT 58.868 50.000 0.00 0.00 0.00 3.67
4695 5658 1.202687 TCTGCAACTGAGGTCTTGGTG 60.203 52.381 0.00 0.00 0.00 4.17
4696 5659 0.819259 TGCAACTGAGGTCTTGGTGC 60.819 55.000 0.00 0.00 0.00 5.01
4697 5660 0.819259 GCAACTGAGGTCTTGGTGCA 60.819 55.000 8.13 0.00 0.00 4.57
4698 5661 1.233019 CAACTGAGGTCTTGGTGCAG 58.767 55.000 0.00 0.00 0.00 4.41
4699 5662 1.131638 AACTGAGGTCTTGGTGCAGA 58.868 50.000 0.00 0.00 0.00 4.26
4700 5663 1.131638 ACTGAGGTCTTGGTGCAGAA 58.868 50.000 0.00 0.00 0.00 3.02
4701 5664 1.490490 ACTGAGGTCTTGGTGCAGAAA 59.510 47.619 0.00 0.00 0.00 2.52
4702 5665 2.092429 ACTGAGGTCTTGGTGCAGAAAA 60.092 45.455 0.00 0.00 0.00 2.29
4703 5666 3.152341 CTGAGGTCTTGGTGCAGAAAAT 58.848 45.455 0.00 0.00 0.00 1.82
4704 5667 3.565307 TGAGGTCTTGGTGCAGAAAATT 58.435 40.909 0.00 0.00 0.00 1.82
4705 5668 3.960102 TGAGGTCTTGGTGCAGAAAATTT 59.040 39.130 0.00 0.00 0.00 1.82
4706 5669 4.037923 TGAGGTCTTGGTGCAGAAAATTTC 59.962 41.667 0.00 0.00 0.00 2.17
4707 5670 4.218312 AGGTCTTGGTGCAGAAAATTTCT 58.782 39.130 1.80 1.80 41.70 2.52
4719 5682 5.813513 AGAAAATTTCTGCAATGGAGGTT 57.186 34.783 7.53 0.00 38.91 3.50
4720 5683 6.178607 AGAAAATTTCTGCAATGGAGGTTT 57.821 33.333 7.53 0.00 38.91 3.27
4721 5684 6.594744 AGAAAATTTCTGCAATGGAGGTTTT 58.405 32.000 7.53 7.39 38.91 2.43
4722 5685 6.484308 AGAAAATTTCTGCAATGGAGGTTTTG 59.516 34.615 7.53 0.00 38.91 2.44
4723 5686 4.961438 ATTTCTGCAATGGAGGTTTTGT 57.039 36.364 1.05 0.00 0.00 2.83
4724 5687 4.751767 TTTCTGCAATGGAGGTTTTGTT 57.248 36.364 1.05 0.00 0.00 2.83
4725 5688 3.731652 TCTGCAATGGAGGTTTTGTTG 57.268 42.857 1.05 0.00 0.00 3.33
4726 5689 2.137523 CTGCAATGGAGGTTTTGTTGC 58.862 47.619 0.00 0.00 43.93 4.17
4727 5690 2.237393 GCAATGGAGGTTTTGTTGCA 57.763 45.000 3.76 0.00 43.33 4.08
4728 5691 2.559440 GCAATGGAGGTTTTGTTGCAA 58.441 42.857 0.00 0.00 43.33 4.08
4729 5692 2.941720 GCAATGGAGGTTTTGTTGCAAA 59.058 40.909 0.00 0.00 43.33 3.68
4730 5693 3.376546 GCAATGGAGGTTTTGTTGCAAAA 59.623 39.130 0.00 0.00 43.33 2.44
4731 5694 4.142513 GCAATGGAGGTTTTGTTGCAAAAA 60.143 37.500 0.00 0.00 43.33 1.94
4732 5695 5.331098 CAATGGAGGTTTTGTTGCAAAAAC 58.669 37.500 15.40 15.40 45.29 2.43
4733 5696 4.278975 TGGAGGTTTTGTTGCAAAAACT 57.721 36.364 20.53 20.53 45.32 2.66
4734 5697 5.407407 TGGAGGTTTTGTTGCAAAAACTA 57.593 34.783 20.46 7.55 45.32 2.24
4735 5698 5.415221 TGGAGGTTTTGTTGCAAAAACTAG 58.585 37.500 20.46 0.00 45.32 2.57
4736 5699 5.186021 TGGAGGTTTTGTTGCAAAAACTAGA 59.814 36.000 20.46 10.37 45.32 2.43
4737 5700 6.127196 TGGAGGTTTTGTTGCAAAAACTAGAT 60.127 34.615 20.46 9.13 45.32 1.98
4738 5701 6.420903 GGAGGTTTTGTTGCAAAAACTAGATC 59.579 38.462 20.46 14.70 45.32 2.75
4739 5702 6.280643 AGGTTTTGTTGCAAAAACTAGATCC 58.719 36.000 19.44 10.13 45.32 3.36
4740 5703 6.045955 GGTTTTGTTGCAAAAACTAGATCCA 58.954 36.000 20.51 1.64 45.32 3.41
4741 5704 6.705825 GGTTTTGTTGCAAAAACTAGATCCAT 59.294 34.615 20.51 0.00 45.32 3.41
4742 5705 7.095649 GGTTTTGTTGCAAAAACTAGATCCATC 60.096 37.037 20.51 3.59 45.32 3.51
4743 5706 6.647334 TTGTTGCAAAAACTAGATCCATCA 57.353 33.333 0.00 0.00 0.00 3.07
4744 5707 6.839124 TGTTGCAAAAACTAGATCCATCAT 57.161 33.333 0.00 0.00 0.00 2.45
4745 5708 7.936496 TGTTGCAAAAACTAGATCCATCATA 57.064 32.000 0.00 0.00 0.00 2.15
4746 5709 7.988737 TGTTGCAAAAACTAGATCCATCATAG 58.011 34.615 0.00 0.00 0.00 2.23
4747 5710 7.828717 TGTTGCAAAAACTAGATCCATCATAGA 59.171 33.333 0.00 0.00 0.00 1.98
4748 5711 7.792374 TGCAAAAACTAGATCCATCATAGAC 57.208 36.000 0.00 0.00 0.00 2.59
4749 5712 6.767902 TGCAAAAACTAGATCCATCATAGACC 59.232 38.462 0.00 0.00 0.00 3.85
4750 5713 6.767902 GCAAAAACTAGATCCATCATAGACCA 59.232 38.462 0.00 0.00 0.00 4.02
4751 5714 7.446625 GCAAAAACTAGATCCATCATAGACCAT 59.553 37.037 0.00 0.00 0.00 3.55
4752 5715 9.347240 CAAAAACTAGATCCATCATAGACCATT 57.653 33.333 0.00 0.00 0.00 3.16
4753 5716 8.915057 AAAACTAGATCCATCATAGACCATTG 57.085 34.615 0.00 0.00 0.00 2.82
4754 5717 6.047511 ACTAGATCCATCATAGACCATTGC 57.952 41.667 0.00 0.00 0.00 3.56
4755 5718 4.987963 AGATCCATCATAGACCATTGCA 57.012 40.909 0.00 0.00 0.00 4.08
4756 5719 5.314718 AGATCCATCATAGACCATTGCAA 57.685 39.130 0.00 0.00 0.00 4.08
4757 5720 5.068636 AGATCCATCATAGACCATTGCAAC 58.931 41.667 0.00 0.00 0.00 4.17
4758 5721 4.233632 TCCATCATAGACCATTGCAACA 57.766 40.909 0.00 0.00 0.00 3.33
4759 5722 3.947196 TCCATCATAGACCATTGCAACAC 59.053 43.478 0.00 0.00 0.00 3.32
4760 5723 3.067180 CCATCATAGACCATTGCAACACC 59.933 47.826 0.00 0.00 0.00 4.16
4761 5724 2.355197 TCATAGACCATTGCAACACCG 58.645 47.619 0.00 0.00 0.00 4.94
4762 5725 1.094785 ATAGACCATTGCAACACCGC 58.905 50.000 0.00 0.00 0.00 5.68
4763 5726 0.250510 TAGACCATTGCAACACCGCA 60.251 50.000 0.00 0.00 41.03 5.69
4764 5727 0.895100 AGACCATTGCAACACCGCAT 60.895 50.000 0.00 0.00 42.62 4.73
4765 5728 0.808125 GACCATTGCAACACCGCATA 59.192 50.000 0.00 0.00 42.62 3.14
4766 5729 1.405105 GACCATTGCAACACCGCATAT 59.595 47.619 0.00 0.00 42.62 1.78
4767 5730 1.134753 ACCATTGCAACACCGCATATG 59.865 47.619 0.00 0.00 42.62 1.78
4768 5731 1.134753 CCATTGCAACACCGCATATGT 59.865 47.619 0.00 0.00 42.62 2.29
4769 5732 2.417107 CCATTGCAACACCGCATATGTT 60.417 45.455 0.00 0.00 42.62 2.71
4770 5733 3.252400 CATTGCAACACCGCATATGTTT 58.748 40.909 0.00 0.00 42.62 2.83
4771 5734 2.627863 TGCAACACCGCATATGTTTC 57.372 45.000 4.29 0.00 38.22 2.78
4772 5735 2.158559 TGCAACACCGCATATGTTTCT 58.841 42.857 4.29 0.00 38.22 2.52
4773 5736 2.095314 TGCAACACCGCATATGTTTCTG 60.095 45.455 4.29 0.00 38.22 3.02
4774 5737 2.161410 GCAACACCGCATATGTTTCTGA 59.839 45.455 4.29 0.00 38.22 3.27
4775 5738 3.365868 GCAACACCGCATATGTTTCTGAA 60.366 43.478 4.29 0.00 38.22 3.02
4776 5739 4.793071 CAACACCGCATATGTTTCTGAAA 58.207 39.130 4.29 0.00 38.22 2.69
4777 5740 4.419522 ACACCGCATATGTTTCTGAAAC 57.580 40.909 22.94 22.94 41.73 2.78
4797 5760 3.851098 ACATAGTCTCTGTTTCGGAAGC 58.149 45.455 0.00 0.00 0.00 3.86
4798 5761 2.631418 TAGTCTCTGTTTCGGAAGCG 57.369 50.000 0.13 0.00 0.00 4.68
4799 5762 0.667792 AGTCTCTGTTTCGGAAGCGC 60.668 55.000 0.00 0.00 0.00 5.92
4800 5763 1.733041 TCTCTGTTTCGGAAGCGCG 60.733 57.895 0.00 0.00 0.00 6.86
4801 5764 2.022129 CTCTGTTTCGGAAGCGCGT 61.022 57.895 8.43 0.00 0.00 6.01
4802 5765 1.557443 CTCTGTTTCGGAAGCGCGTT 61.557 55.000 8.43 0.00 0.00 4.84
4803 5766 1.154654 CTGTTTCGGAAGCGCGTTC 60.155 57.895 8.43 10.33 0.00 3.95
4804 5767 1.827315 CTGTTTCGGAAGCGCGTTCA 61.827 55.000 8.43 0.00 36.82 3.18
4805 5768 1.277440 GTTTCGGAAGCGCGTTCAA 59.723 52.632 8.43 0.00 36.82 2.69
4806 5769 0.990295 GTTTCGGAAGCGCGTTCAAC 60.990 55.000 8.43 7.50 36.82 3.18
4807 5770 1.429927 TTTCGGAAGCGCGTTCAACA 61.430 50.000 8.43 0.00 36.82 3.33
4808 5771 1.429927 TTCGGAAGCGCGTTCAACAA 61.430 50.000 8.43 2.11 36.82 2.83
4809 5772 1.010574 CGGAAGCGCGTTCAACAAA 60.011 52.632 8.43 0.00 36.82 2.83
4810 5773 0.991770 CGGAAGCGCGTTCAACAAAG 60.992 55.000 8.43 0.00 36.82 2.77
4811 5774 0.306533 GGAAGCGCGTTCAACAAAGA 59.693 50.000 8.43 0.00 36.82 2.52
4812 5775 1.268335 GGAAGCGCGTTCAACAAAGAA 60.268 47.619 8.43 0.00 36.82 2.52
4813 5776 1.773525 GAAGCGCGTTCAACAAAGAAC 59.226 47.619 8.43 0.00 43.39 3.01
4821 5784 4.436365 GTTCAACAAAGAACGGCAAATG 57.564 40.909 0.00 0.00 38.58 2.32
4822 5785 2.468831 TCAACAAAGAACGGCAAATGC 58.531 42.857 0.00 0.00 41.14 3.56
4823 5786 2.159184 TCAACAAAGAACGGCAAATGCA 60.159 40.909 7.80 0.00 44.36 3.96
4824 5787 2.593346 ACAAAGAACGGCAAATGCAA 57.407 40.000 7.80 0.00 44.36 4.08
4825 5788 2.472816 ACAAAGAACGGCAAATGCAAG 58.527 42.857 7.80 3.31 44.36 4.01
4826 5789 1.192980 CAAAGAACGGCAAATGCAAGC 59.807 47.619 7.80 0.00 44.36 4.01
4835 5798 3.398954 GCAAATGCAAGCCATCAATTG 57.601 42.857 0.00 0.00 41.59 2.32
4836 5799 2.096819 GCAAATGCAAGCCATCAATTGG 59.903 45.455 5.42 0.00 44.17 3.16
4837 5800 4.175945 GCAAATGCAAGCCATCAATTGGA 61.176 43.478 5.42 0.00 44.13 3.53
4838 5801 6.203201 GCAAATGCAAGCCATCAATTGGAC 62.203 45.833 5.42 0.00 44.13 4.02
4845 5808 3.586039 CATCAATTGGACGCGTGTC 57.414 52.632 20.70 20.76 44.72 3.67
4856 5819 3.857854 GCGTGTCATGCAGCGGAG 61.858 66.667 12.29 0.00 0.00 4.63
4857 5820 3.190849 CGTGTCATGCAGCGGAGG 61.191 66.667 0.00 0.00 0.00 4.30
4858 5821 2.046892 GTGTCATGCAGCGGAGGT 60.047 61.111 0.00 0.00 41.48 3.85
4879 5842 4.203076 GGACGCGGCCACTACGAT 62.203 66.667 30.38 0.00 0.00 3.73
4880 5843 2.654404 GACGCGGCCACTACGATC 60.654 66.667 12.47 0.00 0.00 3.69
4881 5844 4.203076 ACGCGGCCACTACGATCC 62.203 66.667 12.47 0.00 0.00 3.36
4884 5847 4.944372 CGGCCACTACGATCCGCC 62.944 72.222 2.24 0.00 35.20 6.13
4885 5848 4.944372 GGCCACTACGATCCGCCG 62.944 72.222 0.00 0.00 0.00 6.46
4886 5849 4.944372 GCCACTACGATCCGCCGG 62.944 72.222 0.00 0.00 0.00 6.13
4887 5850 3.214123 CCACTACGATCCGCCGGA 61.214 66.667 8.97 8.97 35.55 5.14
4888 5851 2.561956 CCACTACGATCCGCCGGAT 61.562 63.158 20.53 20.53 46.28 4.18
4889 5852 1.371758 CACTACGATCCGCCGGATG 60.372 63.158 25.80 17.53 43.27 3.51
4890 5853 1.527611 ACTACGATCCGCCGGATGA 60.528 57.895 25.80 7.59 43.27 2.92
4891 5854 1.081376 CTACGATCCGCCGGATGAC 60.081 63.158 25.80 9.21 43.27 3.06
4892 5855 2.781750 CTACGATCCGCCGGATGACG 62.782 65.000 25.80 23.14 43.27 4.35
4893 5856 3.961197 CGATCCGCCGGATGACGA 61.961 66.667 25.80 0.00 43.27 4.20
4894 5857 2.651361 GATCCGCCGGATGACGAT 59.349 61.111 25.80 0.00 43.27 3.73
4895 5858 1.880894 GATCCGCCGGATGACGATA 59.119 57.895 25.80 0.00 43.27 2.92
4896 5859 0.242825 GATCCGCCGGATGACGATAA 59.757 55.000 25.80 0.00 43.27 1.75
4897 5860 1.732732 GATCCGCCGGATGACGATAAG 60.733 57.143 25.80 0.00 43.27 1.73
4906 5869 3.541632 GGATGACGATAAGCTTTTCCCA 58.458 45.455 3.20 6.69 0.00 4.37
4907 5870 4.137543 GGATGACGATAAGCTTTTCCCAT 58.862 43.478 3.20 11.16 0.00 4.00
4908 5871 4.580580 GGATGACGATAAGCTTTTCCCATT 59.419 41.667 3.20 0.00 0.00 3.16
4909 5872 5.067805 GGATGACGATAAGCTTTTCCCATTT 59.932 40.000 3.20 0.00 0.00 2.32
4910 5873 6.262273 GGATGACGATAAGCTTTTCCCATTTA 59.738 38.462 3.20 0.00 0.00 1.40
4911 5874 7.040409 GGATGACGATAAGCTTTTCCCATTTAT 60.040 37.037 3.20 0.00 0.00 1.40
4943 5907 4.766891 TCCAACAATTCTGATTTCCTCCAC 59.233 41.667 0.00 0.00 0.00 4.02
4955 5919 7.398618 TCTGATTTCCTCCACATAGAGATATCC 59.601 40.741 0.00 0.00 35.82 2.59
4956 5920 5.984695 TTTCCTCCACATAGAGATATCCG 57.015 43.478 0.00 0.00 35.82 4.18
4963 5927 2.680841 ACATAGAGATATCCGAGCGCTC 59.319 50.000 27.64 27.64 0.00 5.03
4965 5929 1.448985 AGAGATATCCGAGCGCTCTC 58.551 55.000 32.88 23.09 30.58 3.20
4969 5933 2.625790 AGATATCCGAGCGCTCTCTTTT 59.374 45.455 32.88 16.16 37.19 2.27
4970 5934 2.961526 TATCCGAGCGCTCTCTTTTT 57.038 45.000 32.88 14.89 37.19 1.94
5020 5984 7.164122 ACTCCATATAGAATTATGTGCACCAG 58.836 38.462 15.69 0.00 29.70 4.00
5044 6008 1.443802 GCTACAACCCTCAACTCAGC 58.556 55.000 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 4.459852 ACATGCTAAGGCCCATATCTTT 57.540 40.909 0.00 0.00 37.74 2.52
23 24 1.635487 AGAGAAACATGCTAAGGCCCA 59.365 47.619 0.00 0.00 37.74 5.36
27 28 3.076621 TGTGCAGAGAAACATGCTAAGG 58.923 45.455 0.00 0.00 42.98 2.69
35 36 8.575589 ACATTAATTACATTGTGCAGAGAAACA 58.424 29.630 0.00 0.00 0.00 2.83
49 50 6.978080 GCACCGGATCAAAACATTAATTACAT 59.022 34.615 9.46 0.00 0.00 2.29
75 76 9.539194 AATGAGGAAAACATAGGAAAAGAAGAT 57.461 29.630 0.00 0.00 0.00 2.40
77 78 7.965107 CGAATGAGGAAAACATAGGAAAAGAAG 59.035 37.037 0.00 0.00 0.00 2.85
80 81 6.030228 GCGAATGAGGAAAACATAGGAAAAG 58.970 40.000 0.00 0.00 0.00 2.27
90 91 5.363979 AAAGAAGAGCGAATGAGGAAAAC 57.636 39.130 0.00 0.00 0.00 2.43
102 103 3.932710 TGGCATAGTTGTAAAGAAGAGCG 59.067 43.478 0.00 0.00 0.00 5.03
177 178 7.566760 TGCGTTTGATTAGTTTATGGATCAT 57.433 32.000 0.00 0.00 0.00 2.45
190 191 5.175127 TCTAAGTGATGCTGCGTTTGATTA 58.825 37.500 0.00 0.00 0.00 1.75
194 195 3.811722 TTCTAAGTGATGCTGCGTTTG 57.188 42.857 0.00 0.00 0.00 2.93
198 199 3.058983 TGTTGTTTCTAAGTGATGCTGCG 60.059 43.478 0.00 0.00 0.00 5.18
221 222 6.662755 TCACCCTATTGCATTGTCTCTTAAT 58.337 36.000 0.00 0.00 0.00 1.40
222 223 6.061022 TCACCCTATTGCATTGTCTCTTAA 57.939 37.500 0.00 0.00 0.00 1.85
310 311 6.293626 GCATTAACTTCAAGTGAGCTTCTTCA 60.294 38.462 0.00 0.00 31.49 3.02
382 383 4.929808 AGACGTCATCTTTCTTTAACGCAT 59.070 37.500 19.50 0.00 31.62 4.73
428 429 0.766674 TAGCCAACAGGGTGACACCT 60.767 55.000 23.72 7.61 43.08 4.00
429 430 0.321653 CTAGCCAACAGGGTGACACC 60.322 60.000 16.86 16.86 39.65 4.16
498 501 2.505819 GACCATTCAGGACTACCACCAT 59.494 50.000 0.00 0.00 41.22 3.55
581 684 8.141268 TGTGCGTAAGATAATCTGAACATATGA 58.859 33.333 10.38 0.00 43.02 2.15
583 686 8.887036 TTGTGCGTAAGATAATCTGAACATAT 57.113 30.769 0.00 0.00 43.02 1.78
610 715 4.591498 GGGTCTAACAGAAAACCCCATTTT 59.409 41.667 0.00 0.00 44.75 1.82
921 1036 1.183030 TTCGCGGGGAAAGAGAGACA 61.183 55.000 6.13 0.00 0.00 3.41
1078 1199 5.258051 TCTTAATTTCACATTTACGCCCCT 58.742 37.500 0.00 0.00 0.00 4.79
1128 1249 4.978580 GCAAGAACTCAAAGTTGGCTAAAG 59.021 41.667 0.00 0.00 38.80 1.85
1129 1250 4.497340 CGCAAGAACTCAAAGTTGGCTAAA 60.497 41.667 0.00 0.00 38.80 1.85
1151 1272 4.153475 ACACAACAATTCGGTAAATCCTCG 59.847 41.667 0.00 0.00 0.00 4.63
1162 1283 4.035091 TCCAAGTCTTGACACAACAATTCG 59.965 41.667 14.42 0.00 0.00 3.34
1208 1329 1.604278 GTTTATCAAGGCCGATCCAGC 59.396 52.381 0.00 0.00 37.29 4.85
1229 1350 3.354948 TCTAGTTGTAGTAGGGACGCA 57.645 47.619 0.00 0.00 0.00 5.24
1237 1358 7.110810 ACTCAGCAGTACATCTAGTTGTAGTA 58.889 38.462 17.18 5.37 34.69 1.82
1241 1362 5.243954 TCAACTCAGCAGTACATCTAGTTGT 59.756 40.000 18.97 11.11 41.75 3.32
1350 1471 4.396166 TGATTCCTCTTCGCCTTGAAATTC 59.604 41.667 0.00 0.00 35.79 2.17
1368 1489 7.799784 ACAAAATTTAGCAGTGCAAATGATTC 58.200 30.769 19.20 0.00 30.28 2.52
1373 1494 6.018016 GGTCAACAAAATTTAGCAGTGCAAAT 60.018 34.615 19.20 16.84 0.00 2.32
1395 1516 2.151202 ACGTGTCCATGACAAATGGTC 58.849 47.619 0.00 0.00 44.49 4.02
2285 2414 5.244626 AGCTGATGCCTTAGTGACAATTTTT 59.755 36.000 0.00 0.00 40.80 1.94
2288 2417 3.960571 AGCTGATGCCTTAGTGACAATT 58.039 40.909 0.00 0.00 40.80 2.32
2289 2418 3.641434 AGCTGATGCCTTAGTGACAAT 57.359 42.857 0.00 0.00 40.80 2.71
2509 2664 3.433615 GTCCTAGGCATAGCGCAAAATAG 59.566 47.826 11.47 3.81 45.17 1.73
2609 2768 8.150945 AGCGTGTGATTAATTATAGTGGAGAAT 58.849 33.333 0.00 0.00 0.00 2.40
2679 2872 4.136796 CACACTTGATCCCTTGTGAAAGA 58.863 43.478 10.65 0.00 41.61 2.52
2835 3362 3.447229 TGATATGCGTTCTCTCAACCTCA 59.553 43.478 0.00 0.00 0.00 3.86
2994 3522 3.393278 TGTTAGACAGGCCAACTAAAGGT 59.607 43.478 5.01 0.00 0.00 3.50
3596 4140 4.142359 GCTTAGTCTCGATCTCTTTCACCA 60.142 45.833 0.00 0.00 0.00 4.17
3833 4377 5.364778 TGAAGCTTGCAGAAAAGTACTACA 58.635 37.500 2.10 0.00 0.00 2.74
3845 4389 2.360165 AGGAACAAACTGAAGCTTGCAG 59.640 45.455 18.52 18.52 39.26 4.41
4249 5206 7.175467 AGACAAATGCAGAAAGACAATCACATA 59.825 33.333 0.00 0.00 0.00 2.29
4314 5277 3.045688 CGTATGATCATGGTCACGACAG 58.954 50.000 19.35 5.72 0.00 3.51
4321 5284 5.968261 CGTGATATCTCGTATGATCATGGTC 59.032 44.000 18.72 0.00 33.52 4.02
4322 5285 5.677344 GCGTGATATCTCGTATGATCATGGT 60.677 44.000 23.62 0.00 36.33 3.55
4323 5286 4.737279 GCGTGATATCTCGTATGATCATGG 59.263 45.833 23.62 10.05 36.33 3.66
4324 5287 5.454877 CAGCGTGATATCTCGTATGATCATG 59.545 44.000 23.62 2.44 38.04 3.07
4325 5288 5.355350 TCAGCGTGATATCTCGTATGATCAT 59.645 40.000 23.62 13.81 35.55 2.45
4326 5289 4.695455 TCAGCGTGATATCTCGTATGATCA 59.305 41.667 23.62 0.00 35.55 2.92
4327 5290 5.025190 GTCAGCGTGATATCTCGTATGATC 58.975 45.833 25.55 19.20 35.23 2.92
4328 5291 4.697828 AGTCAGCGTGATATCTCGTATGAT 59.302 41.667 25.55 17.42 35.23 2.45
4329 5292 4.065789 AGTCAGCGTGATATCTCGTATGA 58.934 43.478 23.62 22.77 35.55 2.15
4330 5293 4.154717 CAGTCAGCGTGATATCTCGTATG 58.845 47.826 23.62 21.35 35.55 2.39
4331 5294 3.815962 ACAGTCAGCGTGATATCTCGTAT 59.184 43.478 23.62 13.07 35.55 3.06
4332 5295 3.203716 ACAGTCAGCGTGATATCTCGTA 58.796 45.455 23.62 10.65 35.55 3.43
4333 5296 2.017782 ACAGTCAGCGTGATATCTCGT 58.982 47.619 23.62 11.23 35.55 4.18
4334 5297 2.765108 ACAGTCAGCGTGATATCTCG 57.235 50.000 20.03 20.03 36.12 4.04
4335 5298 5.237561 TCTTCTACAGTCAGCGTGATATCTC 59.762 44.000 3.98 0.00 0.00 2.75
4336 5299 5.126779 TCTTCTACAGTCAGCGTGATATCT 58.873 41.667 3.98 0.00 0.00 1.98
4337 5300 5.425577 TCTTCTACAGTCAGCGTGATATC 57.574 43.478 0.00 0.00 0.00 1.63
4338 5301 5.590663 TCTTCTTCTACAGTCAGCGTGATAT 59.409 40.000 0.00 0.00 0.00 1.63
4339 5302 4.941873 TCTTCTTCTACAGTCAGCGTGATA 59.058 41.667 0.00 0.00 0.00 2.15
4340 5303 3.759086 TCTTCTTCTACAGTCAGCGTGAT 59.241 43.478 0.00 0.00 0.00 3.06
4341 5304 3.146847 TCTTCTTCTACAGTCAGCGTGA 58.853 45.455 0.00 0.00 0.00 4.35
4342 5305 3.189495 TCTCTTCTTCTACAGTCAGCGTG 59.811 47.826 0.00 0.00 0.00 5.34
4343 5306 3.413327 TCTCTTCTTCTACAGTCAGCGT 58.587 45.455 0.00 0.00 0.00 5.07
4344 5307 4.427096 TTCTCTTCTTCTACAGTCAGCG 57.573 45.455 0.00 0.00 0.00 5.18
4345 5308 4.619336 CGTTTCTCTTCTTCTACAGTCAGC 59.381 45.833 0.00 0.00 0.00 4.26
4346 5309 5.048643 TCCGTTTCTCTTCTTCTACAGTCAG 60.049 44.000 0.00 0.00 0.00 3.51
4347 5310 4.825634 TCCGTTTCTCTTCTTCTACAGTCA 59.174 41.667 0.00 0.00 0.00 3.41
4348 5311 5.373981 TCCGTTTCTCTTCTTCTACAGTC 57.626 43.478 0.00 0.00 0.00 3.51
4349 5312 5.786264 TTCCGTTTCTCTTCTTCTACAGT 57.214 39.130 0.00 0.00 0.00 3.55
4350 5313 6.159988 ACATTCCGTTTCTCTTCTTCTACAG 58.840 40.000 0.00 0.00 0.00 2.74
4351 5314 6.097915 ACATTCCGTTTCTCTTCTTCTACA 57.902 37.500 0.00 0.00 0.00 2.74
4352 5315 6.157211 TGACATTCCGTTTCTCTTCTTCTAC 58.843 40.000 0.00 0.00 0.00 2.59
4353 5316 6.340962 TGACATTCCGTTTCTCTTCTTCTA 57.659 37.500 0.00 0.00 0.00 2.10
4354 5317 5.215252 TGACATTCCGTTTCTCTTCTTCT 57.785 39.130 0.00 0.00 0.00 2.85
4355 5318 6.370166 AGAATGACATTCCGTTTCTCTTCTTC 59.630 38.462 21.89 0.00 40.13 2.87
4356 5319 6.234177 AGAATGACATTCCGTTTCTCTTCTT 58.766 36.000 21.89 0.00 40.13 2.52
4357 5320 5.799213 AGAATGACATTCCGTTTCTCTTCT 58.201 37.500 21.89 0.00 40.13 2.85
4358 5321 7.596749 TTAGAATGACATTCCGTTTCTCTTC 57.403 36.000 21.89 0.00 40.13 2.87
4359 5322 6.092807 GCTTAGAATGACATTCCGTTTCTCTT 59.907 38.462 21.89 5.49 40.13 2.85
4360 5323 5.582665 GCTTAGAATGACATTCCGTTTCTCT 59.417 40.000 21.89 5.99 40.13 3.10
4361 5324 5.220681 GGCTTAGAATGACATTCCGTTTCTC 60.221 44.000 21.89 7.42 40.13 2.87
4362 5325 4.636206 GGCTTAGAATGACATTCCGTTTCT 59.364 41.667 21.89 8.04 40.13 2.52
4363 5326 4.494199 CGGCTTAGAATGACATTCCGTTTC 60.494 45.833 21.89 10.30 40.13 2.78
4364 5327 3.374058 CGGCTTAGAATGACATTCCGTTT 59.626 43.478 21.89 8.41 40.13 3.60
4365 5328 2.936498 CGGCTTAGAATGACATTCCGTT 59.064 45.455 21.89 8.73 40.13 4.44
4366 5329 2.550978 CGGCTTAGAATGACATTCCGT 58.449 47.619 21.89 9.39 40.13 4.69
4367 5330 1.261619 GCGGCTTAGAATGACATTCCG 59.738 52.381 21.89 19.12 40.13 4.30
4368 5331 1.604278 GGCGGCTTAGAATGACATTCC 59.396 52.381 21.89 8.38 40.13 3.01
4369 5332 2.288666 TGGCGGCTTAGAATGACATTC 58.711 47.619 18.71 18.71 39.56 2.67
4370 5333 2.418368 TGGCGGCTTAGAATGACATT 57.582 45.000 11.43 0.00 0.00 2.71
4371 5334 2.418368 TTGGCGGCTTAGAATGACAT 57.582 45.000 11.43 0.00 0.00 3.06
4372 5335 1.810151 GTTTGGCGGCTTAGAATGACA 59.190 47.619 11.43 0.00 0.00 3.58
4373 5336 1.202031 CGTTTGGCGGCTTAGAATGAC 60.202 52.381 11.43 0.00 36.85 3.06
4374 5337 1.083489 CGTTTGGCGGCTTAGAATGA 58.917 50.000 11.43 0.00 36.85 2.57
4375 5338 1.083489 TCGTTTGGCGGCTTAGAATG 58.917 50.000 11.43 5.77 41.72 2.67
4392 5355 2.783828 ACTCTATCGCAAGGTCATCG 57.216 50.000 0.00 0.00 38.47 3.84
4444 5407 4.647399 GCAGGCCCCTTAATAAATTGTGTA 59.353 41.667 0.00 0.00 0.00 2.90
4471 5434 4.664677 ATATCAGCCGGCGGACGC 62.665 66.667 31.76 15.11 42.52 5.19
4472 5435 1.157870 AAAATATCAGCCGGCGGACG 61.158 55.000 31.76 19.79 43.80 4.79
4473 5436 1.021968 AAAAATATCAGCCGGCGGAC 58.978 50.000 31.76 21.13 0.00 4.79
4474 5437 1.021202 CAAAAATATCAGCCGGCGGA 58.979 50.000 31.28 31.28 0.00 5.54
4475 5438 1.021202 TCAAAAATATCAGCCGGCGG 58.979 50.000 24.35 24.35 0.00 6.13
4476 5439 2.842208 TTCAAAAATATCAGCCGGCG 57.158 45.000 23.20 16.49 0.00 6.46
4477 5440 4.370364 TCTTTCAAAAATATCAGCCGGC 57.630 40.909 21.89 21.89 0.00 6.13
4478 5441 6.638468 GCTAATCTTTCAAAAATATCAGCCGG 59.362 38.462 0.00 0.00 0.00 6.13
4479 5442 6.638468 GGCTAATCTTTCAAAAATATCAGCCG 59.362 38.462 0.00 0.00 34.88 5.52
4480 5443 6.638468 CGGCTAATCTTTCAAAAATATCAGCC 59.362 38.462 0.00 0.00 40.17 4.85
4481 5444 6.638468 CCGGCTAATCTTTCAAAAATATCAGC 59.362 38.462 0.00 0.00 0.00 4.26
4482 5445 6.638468 GCCGGCTAATCTTTCAAAAATATCAG 59.362 38.462 22.15 0.00 0.00 2.90
4483 5446 6.321181 AGCCGGCTAATCTTTCAAAAATATCA 59.679 34.615 31.86 0.00 0.00 2.15
4484 5447 6.739112 AGCCGGCTAATCTTTCAAAAATATC 58.261 36.000 31.86 0.00 0.00 1.63
4485 5448 6.513393 CGAGCCGGCTAATCTTTCAAAAATAT 60.513 38.462 32.97 0.00 0.00 1.28
4486 5449 5.220777 CGAGCCGGCTAATCTTTCAAAAATA 60.221 40.000 32.97 0.00 0.00 1.40
4487 5450 4.438744 CGAGCCGGCTAATCTTTCAAAAAT 60.439 41.667 32.97 0.00 0.00 1.82
4488 5451 3.119990 CGAGCCGGCTAATCTTTCAAAAA 60.120 43.478 32.97 0.00 0.00 1.94
4489 5452 2.418628 CGAGCCGGCTAATCTTTCAAAA 59.581 45.455 32.97 0.00 0.00 2.44
4490 5453 2.006888 CGAGCCGGCTAATCTTTCAAA 58.993 47.619 32.97 0.00 0.00 2.69
4491 5454 1.651987 CGAGCCGGCTAATCTTTCAA 58.348 50.000 32.97 0.00 0.00 2.69
4492 5455 0.810031 GCGAGCCGGCTAATCTTTCA 60.810 55.000 32.97 0.00 0.00 2.69
4493 5456 1.822250 CGCGAGCCGGCTAATCTTTC 61.822 60.000 32.97 14.75 0.00 2.62
4494 5457 1.883084 CGCGAGCCGGCTAATCTTT 60.883 57.895 32.97 4.99 0.00 2.52
4495 5458 2.279517 CGCGAGCCGGCTAATCTT 60.280 61.111 32.97 5.98 0.00 2.40
4496 5459 3.200887 CTCGCGAGCCGGCTAATCT 62.201 63.158 32.97 6.98 37.59 2.40
4497 5460 2.731348 CTCGCGAGCCGGCTAATC 60.731 66.667 32.97 19.87 37.59 1.75
4507 5470 1.829349 GCAATCTGATGGCTCGCGAG 61.829 60.000 31.37 31.37 0.00 5.03
4508 5471 1.884464 GCAATCTGATGGCTCGCGA 60.884 57.895 9.26 9.26 0.00 5.87
4509 5472 2.630317 GCAATCTGATGGCTCGCG 59.370 61.111 9.80 0.00 0.00 5.87
4510 5473 2.890109 CGGCAATCTGATGGCTCGC 61.890 63.158 16.20 0.00 43.23 5.03
4511 5474 2.890109 GCGGCAATCTGATGGCTCG 61.890 63.158 16.20 17.19 43.23 5.03
4512 5475 1.170919 ATGCGGCAATCTGATGGCTC 61.171 55.000 16.20 9.33 43.23 4.70
4513 5476 1.152819 ATGCGGCAATCTGATGGCT 60.153 52.632 16.20 0.00 43.23 4.75
4514 5477 1.285023 GATGCGGCAATCTGATGGC 59.715 57.895 6.82 8.56 42.08 4.40
4515 5478 0.591659 CTGATGCGGCAATCTGATGG 59.408 55.000 6.82 0.00 0.00 3.51
4516 5479 0.591659 CCTGATGCGGCAATCTGATG 59.408 55.000 6.82 0.00 0.00 3.07
4517 5480 3.016997 CCTGATGCGGCAATCTGAT 57.983 52.632 6.82 0.00 0.00 2.90
4518 5481 4.545929 CCTGATGCGGCAATCTGA 57.454 55.556 6.82 0.00 0.00 3.27
4528 5491 3.885521 GCTTGGCTCGCCTGATGC 61.886 66.667 9.65 4.67 36.94 3.91
4529 5492 3.570638 CGCTTGGCTCGCCTGATG 61.571 66.667 9.65 0.00 36.94 3.07
4530 5493 4.087892 ACGCTTGGCTCGCCTGAT 62.088 61.111 9.65 0.00 36.94 2.90
4540 5503 2.032528 TTCTGGAGGCACGCTTGG 59.967 61.111 0.00 0.00 0.00 3.61
4541 5504 0.886490 AAGTTCTGGAGGCACGCTTG 60.886 55.000 0.00 0.00 0.00 4.01
4542 5505 0.603975 GAAGTTCTGGAGGCACGCTT 60.604 55.000 0.00 0.00 0.00 4.68
4543 5506 1.004440 GAAGTTCTGGAGGCACGCT 60.004 57.895 0.00 0.00 0.00 5.07
4544 5507 0.884704 TTGAAGTTCTGGAGGCACGC 60.885 55.000 4.17 0.00 0.00 5.34
4545 5508 0.868406 GTTGAAGTTCTGGAGGCACG 59.132 55.000 4.17 0.00 0.00 5.34
4546 5509 1.604278 GTGTTGAAGTTCTGGAGGCAC 59.396 52.381 4.17 1.36 0.00 5.01
4547 5510 1.211703 TGTGTTGAAGTTCTGGAGGCA 59.788 47.619 4.17 0.00 0.00 4.75
4548 5511 1.876156 CTGTGTTGAAGTTCTGGAGGC 59.124 52.381 4.17 0.00 0.00 4.70
4549 5512 2.158755 ACCTGTGTTGAAGTTCTGGAGG 60.159 50.000 4.17 5.19 0.00 4.30
4550 5513 3.134458 GACCTGTGTTGAAGTTCTGGAG 58.866 50.000 4.17 0.00 0.00 3.86
4551 5514 2.771943 AGACCTGTGTTGAAGTTCTGGA 59.228 45.455 4.17 0.00 0.00 3.86
4552 5515 3.199880 AGACCTGTGTTGAAGTTCTGG 57.800 47.619 4.17 0.25 0.00 3.86
4553 5516 3.941483 ACAAGACCTGTGTTGAAGTTCTG 59.059 43.478 13.37 0.00 36.69 3.02
4554 5517 4.222124 ACAAGACCTGTGTTGAAGTTCT 57.778 40.909 13.37 0.00 36.69 3.01
4555 5518 4.965119 AACAAGACCTGTGTTGAAGTTC 57.035 40.909 13.37 0.00 38.67 3.01
4562 5525 0.107410 TCCGCAACAAGACCTGTGTT 60.107 50.000 0.00 0.00 38.67 3.32
4563 5526 0.107410 TTCCGCAACAAGACCTGTGT 60.107 50.000 0.00 0.00 38.67 3.72
4564 5527 1.238439 ATTCCGCAACAAGACCTGTG 58.762 50.000 0.00 0.00 38.67 3.66
4565 5528 1.981256 AATTCCGCAACAAGACCTGT 58.019 45.000 0.00 0.00 41.27 4.00
4566 5529 4.701956 AATAATTCCGCAACAAGACCTG 57.298 40.909 0.00 0.00 0.00 4.00
4567 5530 5.010282 AGAAATAATTCCGCAACAAGACCT 58.990 37.500 0.00 0.00 36.12 3.85
4568 5531 5.095490 CAGAAATAATTCCGCAACAAGACC 58.905 41.667 0.00 0.00 36.12 3.85
4569 5532 5.699839 ACAGAAATAATTCCGCAACAAGAC 58.300 37.500 0.00 0.00 36.12 3.01
4570 5533 5.957842 ACAGAAATAATTCCGCAACAAGA 57.042 34.783 0.00 0.00 36.12 3.02
4571 5534 7.081349 TGTTACAGAAATAATTCCGCAACAAG 58.919 34.615 0.00 0.00 36.12 3.16
4572 5535 6.971602 TGTTACAGAAATAATTCCGCAACAA 58.028 32.000 0.00 0.00 36.12 2.83
4573 5536 6.561737 TGTTACAGAAATAATTCCGCAACA 57.438 33.333 0.00 0.00 36.12 3.33
4574 5537 7.855904 CCTATGTTACAGAAATAATTCCGCAAC 59.144 37.037 0.00 0.00 36.12 4.17
4575 5538 7.554835 ACCTATGTTACAGAAATAATTCCGCAA 59.445 33.333 0.00 0.00 36.12 4.85
4576 5539 7.051623 ACCTATGTTACAGAAATAATTCCGCA 58.948 34.615 0.00 0.00 36.12 5.69
4577 5540 7.441458 AGACCTATGTTACAGAAATAATTCCGC 59.559 37.037 0.00 0.00 36.12 5.54
4578 5541 8.888579 AGACCTATGTTACAGAAATAATTCCG 57.111 34.615 0.00 0.00 36.12 4.30
4582 5545 9.314321 CGACAAGACCTATGTTACAGAAATAAT 57.686 33.333 0.00 0.00 0.00 1.28
4583 5546 8.308931 ACGACAAGACCTATGTTACAGAAATAA 58.691 33.333 0.00 0.00 0.00 1.40
4584 5547 7.833786 ACGACAAGACCTATGTTACAGAAATA 58.166 34.615 0.00 0.00 0.00 1.40
4585 5548 6.698380 ACGACAAGACCTATGTTACAGAAAT 58.302 36.000 0.00 0.00 0.00 2.17
4586 5549 6.092955 ACGACAAGACCTATGTTACAGAAA 57.907 37.500 0.00 0.00 0.00 2.52
4587 5550 5.717078 ACGACAAGACCTATGTTACAGAA 57.283 39.130 0.00 0.00 0.00 3.02
4588 5551 6.175471 TCTACGACAAGACCTATGTTACAGA 58.825 40.000 0.00 0.00 0.00 3.41
4589 5552 6.432607 TCTACGACAAGACCTATGTTACAG 57.567 41.667 0.00 0.00 0.00 2.74
4590 5553 6.822667 TTCTACGACAAGACCTATGTTACA 57.177 37.500 0.00 0.00 0.00 2.41
4591 5554 8.699283 AAATTCTACGACAAGACCTATGTTAC 57.301 34.615 0.00 0.00 0.00 2.50
4592 5555 9.715121 AAAAATTCTACGACAAGACCTATGTTA 57.285 29.630 0.00 0.00 0.00 2.41
4593 5556 8.617290 AAAAATTCTACGACAAGACCTATGTT 57.383 30.769 0.00 0.00 0.00 2.71
4616 5579 2.920490 GACAAAACAGTCGCTGCAAAAA 59.080 40.909 0.00 0.00 34.37 1.94
4617 5580 2.525055 GACAAAACAGTCGCTGCAAAA 58.475 42.857 0.00 0.00 34.37 2.44
4618 5581 2.187351 GACAAAACAGTCGCTGCAAA 57.813 45.000 0.00 0.00 34.37 3.68
4619 5582 3.916061 GACAAAACAGTCGCTGCAA 57.084 47.368 0.00 0.00 34.37 4.08
4671 5634 3.381272 CCAAGACCTCAGTTGCAGAAAAA 59.619 43.478 0.00 0.00 0.00 1.94
4672 5635 2.951642 CCAAGACCTCAGTTGCAGAAAA 59.048 45.455 0.00 0.00 0.00 2.29
4673 5636 2.092429 ACCAAGACCTCAGTTGCAGAAA 60.092 45.455 0.00 0.00 0.00 2.52
4674 5637 1.490490 ACCAAGACCTCAGTTGCAGAA 59.510 47.619 0.00 0.00 0.00 3.02
4675 5638 1.131638 ACCAAGACCTCAGTTGCAGA 58.868 50.000 0.00 0.00 0.00 4.26
4676 5639 1.233019 CACCAAGACCTCAGTTGCAG 58.767 55.000 0.00 0.00 0.00 4.41
4677 5640 0.819259 GCACCAAGACCTCAGTTGCA 60.819 55.000 0.00 0.00 0.00 4.08
4678 5641 0.819259 TGCACCAAGACCTCAGTTGC 60.819 55.000 0.00 0.00 0.00 4.17
4679 5642 1.202687 TCTGCACCAAGACCTCAGTTG 60.203 52.381 0.00 0.00 0.00 3.16
4680 5643 1.131638 TCTGCACCAAGACCTCAGTT 58.868 50.000 0.00 0.00 0.00 3.16
4681 5644 1.131638 TTCTGCACCAAGACCTCAGT 58.868 50.000 0.00 0.00 0.00 3.41
4682 5645 2.260844 TTTCTGCACCAAGACCTCAG 57.739 50.000 0.00 0.00 0.00 3.35
4683 5646 2.727123 TTTTCTGCACCAAGACCTCA 57.273 45.000 0.00 0.00 0.00 3.86
4684 5647 4.279420 AGAAATTTTCTGCACCAAGACCTC 59.721 41.667 10.82 0.00 38.91 3.85
4685 5648 4.218312 AGAAATTTTCTGCACCAAGACCT 58.782 39.130 10.82 0.00 38.91 3.85
4686 5649 4.590850 AGAAATTTTCTGCACCAAGACC 57.409 40.909 10.82 0.00 38.91 3.85
4697 5660 5.813513 AACCTCCATTGCAGAAATTTTCT 57.186 34.783 5.82 5.82 41.70 2.52
4698 5661 6.260714 ACAAAACCTCCATTGCAGAAATTTTC 59.739 34.615 0.66 0.66 0.00 2.29
4699 5662 6.121590 ACAAAACCTCCATTGCAGAAATTTT 58.878 32.000 0.00 0.00 0.00 1.82
4700 5663 5.683681 ACAAAACCTCCATTGCAGAAATTT 58.316 33.333 0.00 0.00 0.00 1.82
4701 5664 5.294734 ACAAAACCTCCATTGCAGAAATT 57.705 34.783 0.00 0.00 0.00 1.82
4702 5665 4.961438 ACAAAACCTCCATTGCAGAAAT 57.039 36.364 0.00 0.00 0.00 2.17
4703 5666 4.440880 CAACAAAACCTCCATTGCAGAAA 58.559 39.130 0.00 0.00 0.00 2.52
4704 5667 3.740764 GCAACAAAACCTCCATTGCAGAA 60.741 43.478 2.54 0.00 44.01 3.02
4705 5668 2.224018 GCAACAAAACCTCCATTGCAGA 60.224 45.455 2.54 0.00 44.01 4.26
4706 5669 2.137523 GCAACAAAACCTCCATTGCAG 58.862 47.619 2.54 0.00 44.01 4.41
4707 5670 2.237393 GCAACAAAACCTCCATTGCA 57.763 45.000 2.54 0.00 44.01 4.08
4708 5671 2.237393 TGCAACAAAACCTCCATTGC 57.763 45.000 0.00 0.00 44.66 3.56
4709 5672 5.123661 AGTTTTTGCAACAAAACCTCCATTG 59.876 36.000 18.63 0.00 39.11 2.82
4710 5673 5.252547 AGTTTTTGCAACAAAACCTCCATT 58.747 33.333 18.63 1.97 39.11 3.16
4711 5674 4.842574 AGTTTTTGCAACAAAACCTCCAT 58.157 34.783 18.63 2.55 39.11 3.41
4712 5675 4.278975 AGTTTTTGCAACAAAACCTCCA 57.721 36.364 18.63 0.00 39.11 3.86
4713 5676 5.656480 TCTAGTTTTTGCAACAAAACCTCC 58.344 37.500 18.63 0.00 39.11 4.30
4714 5677 6.420903 GGATCTAGTTTTTGCAACAAAACCTC 59.579 38.462 18.63 12.22 39.11 3.85
4715 5678 6.127196 TGGATCTAGTTTTTGCAACAAAACCT 60.127 34.615 18.63 6.55 39.11 3.50
4716 5679 6.045955 TGGATCTAGTTTTTGCAACAAAACC 58.954 36.000 18.63 5.45 39.11 3.27
4717 5680 7.437862 TGATGGATCTAGTTTTTGCAACAAAAC 59.562 33.333 15.78 15.78 38.72 2.43
4718 5681 7.495901 TGATGGATCTAGTTTTTGCAACAAAA 58.504 30.769 0.00 1.50 0.00 2.44
4719 5682 7.048629 TGATGGATCTAGTTTTTGCAACAAA 57.951 32.000 0.00 0.48 0.00 2.83
4720 5683 6.647334 TGATGGATCTAGTTTTTGCAACAA 57.353 33.333 0.00 0.00 0.00 2.83
4721 5684 6.839124 ATGATGGATCTAGTTTTTGCAACA 57.161 33.333 0.00 0.00 0.00 3.33
4722 5685 8.125448 GTCTATGATGGATCTAGTTTTTGCAAC 58.875 37.037 0.00 0.00 0.00 4.17
4723 5686 7.283127 GGTCTATGATGGATCTAGTTTTTGCAA 59.717 37.037 0.00 0.00 0.00 4.08
4724 5687 6.767902 GGTCTATGATGGATCTAGTTTTTGCA 59.232 38.462 0.00 0.00 0.00 4.08
4725 5688 6.767902 TGGTCTATGATGGATCTAGTTTTTGC 59.232 38.462 0.00 0.00 0.00 3.68
4726 5689 8.915057 ATGGTCTATGATGGATCTAGTTTTTG 57.085 34.615 0.00 0.00 0.00 2.44
4727 5690 9.347240 CAATGGTCTATGATGGATCTAGTTTTT 57.653 33.333 0.00 0.00 0.00 1.94
4728 5691 7.446625 GCAATGGTCTATGATGGATCTAGTTTT 59.553 37.037 0.00 0.00 0.00 2.43
4729 5692 6.939163 GCAATGGTCTATGATGGATCTAGTTT 59.061 38.462 0.00 0.00 0.00 2.66
4730 5693 6.043590 TGCAATGGTCTATGATGGATCTAGTT 59.956 38.462 0.00 0.00 0.00 2.24
4731 5694 5.545335 TGCAATGGTCTATGATGGATCTAGT 59.455 40.000 0.00 0.00 0.00 2.57
4732 5695 6.046290 TGCAATGGTCTATGATGGATCTAG 57.954 41.667 0.00 0.00 0.00 2.43
4733 5696 6.183361 TGTTGCAATGGTCTATGATGGATCTA 60.183 38.462 0.59 0.00 0.00 1.98
4734 5697 4.987963 TGCAATGGTCTATGATGGATCT 57.012 40.909 0.00 0.00 0.00 2.75
4735 5698 4.823442 TGTTGCAATGGTCTATGATGGATC 59.177 41.667 0.59 0.00 0.00 3.36
4736 5699 4.581824 GTGTTGCAATGGTCTATGATGGAT 59.418 41.667 0.59 0.00 0.00 3.41
4737 5700 3.947196 GTGTTGCAATGGTCTATGATGGA 59.053 43.478 0.59 0.00 0.00 3.41
4738 5701 3.067180 GGTGTTGCAATGGTCTATGATGG 59.933 47.826 0.59 0.00 0.00 3.51
4739 5702 3.242837 CGGTGTTGCAATGGTCTATGATG 60.243 47.826 0.59 0.00 0.00 3.07
4740 5703 2.945008 CGGTGTTGCAATGGTCTATGAT 59.055 45.455 0.59 0.00 0.00 2.45
4741 5704 2.355197 CGGTGTTGCAATGGTCTATGA 58.645 47.619 0.59 0.00 0.00 2.15
4742 5705 1.202177 GCGGTGTTGCAATGGTCTATG 60.202 52.381 0.59 0.00 34.15 2.23
4743 5706 1.094785 GCGGTGTTGCAATGGTCTAT 58.905 50.000 0.59 0.00 34.15 1.98
4744 5707 0.250510 TGCGGTGTTGCAATGGTCTA 60.251 50.000 0.59 0.00 43.02 2.59
4745 5708 1.528076 TGCGGTGTTGCAATGGTCT 60.528 52.632 0.59 0.00 43.02 3.85
4746 5709 3.038280 TGCGGTGTTGCAATGGTC 58.962 55.556 0.59 0.00 43.02 4.02
4753 5716 2.161410 TCAGAAACATATGCGGTGTTGC 59.839 45.455 1.58 1.13 39.57 4.17
4754 5717 4.418013 TTCAGAAACATATGCGGTGTTG 57.582 40.909 1.58 0.00 39.57 3.33
4755 5718 4.277174 TGTTTCAGAAACATATGCGGTGTT 59.723 37.500 22.53 0.00 45.79 3.32
4756 5719 3.818210 TGTTTCAGAAACATATGCGGTGT 59.182 39.130 22.53 0.00 45.79 4.16
4757 5720 4.418013 TGTTTCAGAAACATATGCGGTG 57.582 40.909 22.53 0.00 45.79 4.94
4775 5738 4.246458 GCTTCCGAAACAGAGACTATGTT 58.754 43.478 9.66 9.66 42.55 2.71
4776 5739 3.673594 CGCTTCCGAAACAGAGACTATGT 60.674 47.826 0.00 0.00 36.29 2.29
4777 5740 2.854777 CGCTTCCGAAACAGAGACTATG 59.145 50.000 0.00 0.00 36.29 2.23
4778 5741 2.735762 GCGCTTCCGAAACAGAGACTAT 60.736 50.000 0.00 0.00 36.29 2.12
4779 5742 1.402456 GCGCTTCCGAAACAGAGACTA 60.402 52.381 0.00 0.00 36.29 2.59
4780 5743 0.667792 GCGCTTCCGAAACAGAGACT 60.668 55.000 0.00 0.00 36.29 3.24
4781 5744 1.782181 GCGCTTCCGAAACAGAGAC 59.218 57.895 0.00 0.00 36.29 3.36
4782 5745 1.733041 CGCGCTTCCGAAACAGAGA 60.733 57.895 5.56 0.00 36.29 3.10
4783 5746 1.557443 AACGCGCTTCCGAAACAGAG 61.557 55.000 5.73 0.00 36.29 3.35
4784 5747 1.554042 GAACGCGCTTCCGAAACAGA 61.554 55.000 5.73 0.00 36.29 3.41
4785 5748 1.154654 GAACGCGCTTCCGAAACAG 60.155 57.895 5.73 0.00 36.29 3.16
4786 5749 1.429927 TTGAACGCGCTTCCGAAACA 61.430 50.000 5.73 0.00 36.29 2.83
4787 5750 0.990295 GTTGAACGCGCTTCCGAAAC 60.990 55.000 5.73 6.68 36.29 2.78
4788 5751 1.277440 GTTGAACGCGCTTCCGAAA 59.723 52.632 5.73 0.00 36.29 3.46
4789 5752 1.429927 TTGTTGAACGCGCTTCCGAA 61.430 50.000 5.73 0.00 36.29 4.30
4790 5753 1.429927 TTTGTTGAACGCGCTTCCGA 61.430 50.000 5.73 0.00 36.29 4.55
4791 5754 0.991770 CTTTGTTGAACGCGCTTCCG 60.992 55.000 5.73 0.00 37.57 4.30
4792 5755 0.306533 TCTTTGTTGAACGCGCTTCC 59.693 50.000 5.73 0.00 0.00 3.46
4793 5756 1.773525 GTTCTTTGTTGAACGCGCTTC 59.226 47.619 5.73 10.26 37.24 3.86
4794 5757 1.822581 GTTCTTTGTTGAACGCGCTT 58.177 45.000 5.73 0.00 37.24 4.68
4795 5758 3.526825 GTTCTTTGTTGAACGCGCT 57.473 47.368 5.73 0.00 37.24 5.92
4800 5763 3.302415 GCATTTGCCGTTCTTTGTTGAAC 60.302 43.478 0.00 0.00 41.91 3.18
4801 5764 2.863137 GCATTTGCCGTTCTTTGTTGAA 59.137 40.909 0.00 0.00 34.31 2.69
4802 5765 2.159184 TGCATTTGCCGTTCTTTGTTGA 60.159 40.909 0.00 0.00 41.18 3.18
4803 5766 2.200067 TGCATTTGCCGTTCTTTGTTG 58.800 42.857 0.00 0.00 41.18 3.33
4804 5767 2.593346 TGCATTTGCCGTTCTTTGTT 57.407 40.000 0.00 0.00 41.18 2.83
4805 5768 2.472816 CTTGCATTTGCCGTTCTTTGT 58.527 42.857 0.00 0.00 41.18 2.83
4806 5769 1.192980 GCTTGCATTTGCCGTTCTTTG 59.807 47.619 0.00 0.00 41.18 2.77
4807 5770 1.501169 GCTTGCATTTGCCGTTCTTT 58.499 45.000 0.00 0.00 41.18 2.52
4808 5771 0.319813 GGCTTGCATTTGCCGTTCTT 60.320 50.000 9.58 0.00 39.71 2.52
4809 5772 1.290009 GGCTTGCATTTGCCGTTCT 59.710 52.632 9.58 0.00 39.71 3.01
4810 5773 3.860717 GGCTTGCATTTGCCGTTC 58.139 55.556 9.58 0.00 39.71 3.95
4815 5778 2.096819 CCAATTGATGGCTTGCATTTGC 59.903 45.455 7.12 0.00 43.80 3.68
4827 5790 0.795698 TGACACGCGTCCAATTGATG 59.204 50.000 9.86 0.00 41.85 3.07
4828 5791 1.398041 CATGACACGCGTCCAATTGAT 59.602 47.619 9.86 0.00 41.85 2.57
4829 5792 0.795698 CATGACACGCGTCCAATTGA 59.204 50.000 9.86 0.00 41.85 2.57
4830 5793 0.794229 GCATGACACGCGTCCAATTG 60.794 55.000 9.86 8.02 41.85 2.32
4831 5794 1.233950 TGCATGACACGCGTCCAATT 61.234 50.000 9.86 0.00 41.85 2.32
4832 5795 1.638388 CTGCATGACACGCGTCCAAT 61.638 55.000 9.86 0.00 41.85 3.16
4833 5796 2.280457 TGCATGACACGCGTCCAA 60.280 55.556 9.86 0.00 41.85 3.53
4834 5797 2.738139 CTGCATGACACGCGTCCA 60.738 61.111 9.86 11.50 41.85 4.02
4835 5798 4.152625 GCTGCATGACACGCGTCC 62.153 66.667 9.86 4.75 41.85 4.79
4836 5799 4.489795 CGCTGCATGACACGCGTC 62.490 66.667 9.86 0.00 42.93 5.19
4839 5802 3.857854 CTCCGCTGCATGACACGC 61.858 66.667 0.00 0.00 0.00 5.34
4840 5803 3.190849 CCTCCGCTGCATGACACG 61.191 66.667 0.00 0.00 0.00 4.49
4841 5804 2.046892 ACCTCCGCTGCATGACAC 60.047 61.111 0.00 0.00 0.00 3.67
4842 5805 2.046988 CACCTCCGCTGCATGACA 60.047 61.111 0.00 0.00 0.00 3.58
4843 5806 2.821366 CCACCTCCGCTGCATGAC 60.821 66.667 0.00 0.00 0.00 3.06
4844 5807 4.783621 GCCACCTCCGCTGCATGA 62.784 66.667 0.00 0.00 0.00 3.07
4862 5825 4.203076 ATCGTAGTGGCCGCGTCC 62.203 66.667 11.42 0.42 0.00 4.79
4863 5826 2.654404 GATCGTAGTGGCCGCGTC 60.654 66.667 11.42 7.17 0.00 5.19
4864 5827 4.203076 GGATCGTAGTGGCCGCGT 62.203 66.667 11.42 1.86 0.00 6.01
4867 5830 4.944372 GGCGGATCGTAGTGGCCG 62.944 72.222 0.00 0.00 46.14 6.13
4868 5831 4.944372 CGGCGGATCGTAGTGGCC 62.944 72.222 0.00 0.00 40.36 5.36
4869 5832 4.944372 CCGGCGGATCGTAGTGGC 62.944 72.222 24.41 0.00 0.00 5.01
4870 5833 2.561956 ATCCGGCGGATCGTAGTGG 61.562 63.158 34.54 0.24 38.09 4.00
4871 5834 1.371758 CATCCGGCGGATCGTAGTG 60.372 63.158 36.96 23.26 40.98 2.74
4872 5835 1.527611 TCATCCGGCGGATCGTAGT 60.528 57.895 36.96 15.53 40.98 2.73
4873 5836 1.081376 GTCATCCGGCGGATCGTAG 60.081 63.158 36.96 25.48 40.98 3.51
4874 5837 2.900167 CGTCATCCGGCGGATCGTA 61.900 63.158 36.96 22.58 40.98 3.43
4875 5838 4.266070 CGTCATCCGGCGGATCGT 62.266 66.667 36.96 17.20 40.98 3.73
4876 5839 1.918868 TATCGTCATCCGGCGGATCG 61.919 60.000 36.96 34.17 40.98 3.69
4877 5840 0.242825 TTATCGTCATCCGGCGGATC 59.757 55.000 36.96 25.43 40.98 3.36
4878 5841 0.243907 CTTATCGTCATCCGGCGGAT 59.756 55.000 34.54 34.54 44.21 4.18
4879 5842 1.658114 CTTATCGTCATCCGGCGGA 59.342 57.895 33.10 33.10 37.11 5.54
4880 5843 2.022129 GCTTATCGTCATCCGGCGG 61.022 63.158 22.51 22.51 37.11 6.13
4881 5844 0.597637 AAGCTTATCGTCATCCGGCG 60.598 55.000 0.00 0.00 37.11 6.46
4882 5845 1.583054 AAAGCTTATCGTCATCCGGC 58.417 50.000 0.00 0.00 37.11 6.13
4883 5846 2.544267 GGAAAAGCTTATCGTCATCCGG 59.456 50.000 0.00 0.00 37.11 5.14
4884 5847 2.544267 GGGAAAAGCTTATCGTCATCCG 59.456 50.000 0.00 0.00 38.13 4.18
4885 5848 3.541632 TGGGAAAAGCTTATCGTCATCC 58.458 45.455 0.00 0.00 0.00 3.51
4886 5849 5.757850 AATGGGAAAAGCTTATCGTCATC 57.242 39.130 0.00 0.00 0.00 2.92
4887 5850 7.823745 ATAAATGGGAAAAGCTTATCGTCAT 57.176 32.000 0.00 0.00 0.00 3.06
4888 5851 7.639113 AATAAATGGGAAAAGCTTATCGTCA 57.361 32.000 0.00 0.00 0.00 4.35
4896 5859 8.918116 GGATCTCTTTAATAAATGGGAAAAGCT 58.082 33.333 0.00 0.00 0.00 3.74
4897 5860 8.695456 TGGATCTCTTTAATAAATGGGAAAAGC 58.305 33.333 0.00 0.00 0.00 3.51
4900 5863 9.540538 TGTTGGATCTCTTTAATAAATGGGAAA 57.459 29.630 0.00 0.00 0.00 3.13
4901 5864 9.540538 TTGTTGGATCTCTTTAATAAATGGGAA 57.459 29.630 0.00 0.00 0.00 3.97
4902 5865 9.713684 ATTGTTGGATCTCTTTAATAAATGGGA 57.286 29.630 0.00 0.00 0.00 4.37
4925 5888 7.278135 TCTCTATGTGGAGGAAATCAGAATTG 58.722 38.462 0.00 0.00 34.39 2.32
4930 5893 7.555087 GGATATCTCTATGTGGAGGAAATCAG 58.445 42.308 2.05 0.00 34.39 2.90
4937 5901 3.380004 GCTCGGATATCTCTATGTGGAGG 59.620 52.174 2.05 0.00 34.39 4.30
4943 5907 2.942376 AGAGCGCTCGGATATCTCTATG 59.058 50.000 30.39 0.00 32.86 2.23
4972 5936 8.556213 AGTAATCTCTATTTAACCGTGCAAAA 57.444 30.769 0.00 0.00 0.00 2.44
4973 5937 7.279313 GGAGTAATCTCTATTTAACCGTGCAAA 59.721 37.037 0.00 0.00 40.29 3.68
4974 5938 6.759827 GGAGTAATCTCTATTTAACCGTGCAA 59.240 38.462 0.00 0.00 40.29 4.08
4975 5939 6.127281 TGGAGTAATCTCTATTTAACCGTGCA 60.127 38.462 0.00 0.00 40.29 4.57
4976 5940 6.278363 TGGAGTAATCTCTATTTAACCGTGC 58.722 40.000 0.00 0.00 40.29 5.34
5020 5984 1.373748 TTGAGGGTTGTAGCGCGTC 60.374 57.895 8.43 0.00 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.