Multiple sequence alignment - TraesCS5D01G109400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G109400 chr5D 100.000 6027 0 0 1 6027 123466209 123460183 0.000000e+00 11130
1 TraesCS5D01G109400 chr5B 93.854 4523 185 37 858 5323 136421294 136416808 0.000000e+00 6726
2 TraesCS5D01G109400 chr5B 92.818 724 29 11 5324 6027 136414618 136413898 0.000000e+00 1027
3 TraesCS5D01G109400 chr5A 94.147 4476 150 52 858 5245 136402576 136398125 0.000000e+00 6711
4 TraesCS5D01G109400 chr5A 89.569 719 38 16 5324 6027 136397744 136397048 0.000000e+00 878
5 TraesCS5D01G109400 chr5A 95.000 80 4 0 5244 5323 136397880 136397801 6.340000e-25 126
6 TraesCS5D01G109400 chr2D 95.063 871 28 6 1 857 572678575 572679444 0.000000e+00 1356
7 TraesCS5D01G109400 chr2D 94.259 871 33 6 1 857 47515727 47516594 0.000000e+00 1315
8 TraesCS5D01G109400 chr2D 91.504 871 42 10 1 857 551887657 551888509 0.000000e+00 1170
9 TraesCS5D01G109400 chr4A 92.423 871 50 7 1 857 445034285 445033417 0.000000e+00 1229
10 TraesCS5D01G109400 chr6B 91.647 862 59 11 1 857 667893646 667894499 0.000000e+00 1181
11 TraesCS5D01G109400 chr6B 89.246 809 66 13 66 857 213491071 213490267 0.000000e+00 992
12 TraesCS5D01G109400 chr4B 91.076 874 58 11 1 857 513076479 513077349 0.000000e+00 1164
13 TraesCS5D01G109400 chr3D 91.519 849 55 9 1 834 96698588 96699434 0.000000e+00 1153
14 TraesCS5D01G109400 chr3B 90.252 872 67 8 1 858 421116501 421117368 0.000000e+00 1123
15 TraesCS5D01G109400 chr3B 89.384 876 72 11 1 859 232720056 232720927 0.000000e+00 1083
16 TraesCS5D01G109400 chr1B 88.902 874 79 7 1 857 616086452 616085580 0.000000e+00 1061
17 TraesCS5D01G109400 chr2A 90.772 531 47 2 1 530 21930069 21929540 0.000000e+00 708


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G109400 chr5D 123460183 123466209 6026 True 11130.000000 11130 100.000000 1 6027 1 chr5D.!!$R1 6026
1 TraesCS5D01G109400 chr5B 136413898 136421294 7396 True 3876.500000 6726 93.336000 858 6027 2 chr5B.!!$R1 5169
2 TraesCS5D01G109400 chr5A 136397048 136402576 5528 True 2571.666667 6711 92.905333 858 6027 3 chr5A.!!$R1 5169
3 TraesCS5D01G109400 chr2D 572678575 572679444 869 False 1356.000000 1356 95.063000 1 857 1 chr2D.!!$F3 856
4 TraesCS5D01G109400 chr2D 47515727 47516594 867 False 1315.000000 1315 94.259000 1 857 1 chr2D.!!$F1 856
5 TraesCS5D01G109400 chr2D 551887657 551888509 852 False 1170.000000 1170 91.504000 1 857 1 chr2D.!!$F2 856
6 TraesCS5D01G109400 chr4A 445033417 445034285 868 True 1229.000000 1229 92.423000 1 857 1 chr4A.!!$R1 856
7 TraesCS5D01G109400 chr6B 667893646 667894499 853 False 1181.000000 1181 91.647000 1 857 1 chr6B.!!$F1 856
8 TraesCS5D01G109400 chr6B 213490267 213491071 804 True 992.000000 992 89.246000 66 857 1 chr6B.!!$R1 791
9 TraesCS5D01G109400 chr4B 513076479 513077349 870 False 1164.000000 1164 91.076000 1 857 1 chr4B.!!$F1 856
10 TraesCS5D01G109400 chr3D 96698588 96699434 846 False 1153.000000 1153 91.519000 1 834 1 chr3D.!!$F1 833
11 TraesCS5D01G109400 chr3B 421116501 421117368 867 False 1123.000000 1123 90.252000 1 858 1 chr3B.!!$F2 857
12 TraesCS5D01G109400 chr3B 232720056 232720927 871 False 1083.000000 1083 89.384000 1 859 1 chr3B.!!$F1 858
13 TraesCS5D01G109400 chr1B 616085580 616086452 872 True 1061.000000 1061 88.902000 1 857 1 chr1B.!!$R1 856
14 TraesCS5D01G109400 chr2A 21929540 21930069 529 True 708.000000 708 90.772000 1 530 1 chr2A.!!$R1 529

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
163 164 1.602165 GCTTCGACGACCTGACAGAAA 60.602 52.381 3.32 0.0 0.00 2.52 F
1392 1440 0.034896 TCCGCACTGGACCTTTTCTC 59.965 55.000 0.00 0.0 43.74 2.87 F
1393 1441 0.035458 CCGCACTGGACCTTTTCTCT 59.965 55.000 0.00 0.0 42.00 3.10 F
2037 2089 0.961753 GCACTTGGGGTGGAAAAGAG 59.038 55.000 0.00 0.0 45.44 2.85 F
2944 2998 0.770166 TGGGATGTGGGGTCACTGAA 60.770 55.000 0.00 0.0 43.94 3.02 F
4104 4199 0.543749 ATCAAGCCACCCTAGCTGAC 59.456 55.000 0.00 0.0 40.49 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1524 1575 1.211709 CCATTTCGGAACCCAACGC 59.788 57.895 0.00 0.0 36.56 4.84 R
2902 2955 0.890996 CTTCCAACCAGTCACCCTGC 60.891 60.000 0.00 0.0 40.06 4.85 R
2944 2998 9.271828 CTACCATTGCTTTTTAAAATTTCCTGT 57.728 29.630 0.55 0.0 0.00 4.00 R
3546 3613 3.054655 GCCCAGAGGTATACCAACTGAAA 60.055 47.826 32.15 0.0 41.59 2.69 R
4581 4706 2.103432 TGTTACGTGGAGTTGTGGACAT 59.897 45.455 0.00 0.0 0.00 3.06 R
5092 5217 1.055849 AAGAACAAAATGGCCCCCAC 58.944 50.000 0.00 0.0 35.80 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 91 5.554510 CGTCCATCAACATAAGAACGATTCG 60.555 44.000 4.14 4.14 34.02 3.34
163 164 1.602165 GCTTCGACGACCTGACAGAAA 60.602 52.381 3.32 0.00 0.00 2.52
228 232 6.860790 TTTGGTAACTTCTCAAAAACCCTT 57.139 33.333 0.00 0.00 37.61 3.95
235 239 2.070573 TCTCAAAAACCCTTAGCCCCT 58.929 47.619 0.00 0.00 0.00 4.79
454 459 2.429058 CATCCCCGATGCCTCCAG 59.571 66.667 0.00 0.00 33.17 3.86
836 862 4.046462 GTGCTTCGGTCGCAACTATAATA 58.954 43.478 0.00 0.00 39.39 0.98
845 871 5.107065 GGTCGCAACTATAATAACCATGAGC 60.107 44.000 0.00 0.00 0.00 4.26
876 902 4.591498 TCTCAAGCCTTAAACCACACTCTA 59.409 41.667 0.00 0.00 0.00 2.43
893 919 7.063544 CCACACTCTATTCTCTTCCTTTTAACG 59.936 40.741 0.00 0.00 0.00 3.18
896 922 7.009723 CACTCTATTCTCTTCCTTTTAACGCTC 59.990 40.741 0.00 0.00 0.00 5.03
898 924 3.329929 TCTCTTCCTTTTAACGCTCCC 57.670 47.619 0.00 0.00 0.00 4.30
1266 1297 1.587043 CGCGAGAGGGTGAGTTCTCA 61.587 60.000 0.00 0.00 39.82 3.27
1275 1306 1.625818 GGTGAGTTCTCATGTCCCTGT 59.374 52.381 5.80 0.00 0.00 4.00
1278 1312 2.079925 GAGTTCTCATGTCCCTGTTGC 58.920 52.381 0.00 0.00 0.00 4.17
1390 1438 4.792087 TCCGCACTGGACCTTTTC 57.208 55.556 0.00 0.00 43.74 2.29
1391 1439 2.142220 TCCGCACTGGACCTTTTCT 58.858 52.632 0.00 0.00 43.74 2.52
1392 1440 0.034896 TCCGCACTGGACCTTTTCTC 59.965 55.000 0.00 0.00 43.74 2.87
1393 1441 0.035458 CCGCACTGGACCTTTTCTCT 59.965 55.000 0.00 0.00 42.00 3.10
1394 1442 1.543429 CCGCACTGGACCTTTTCTCTT 60.543 52.381 0.00 0.00 42.00 2.85
1395 1443 1.801178 CGCACTGGACCTTTTCTCTTC 59.199 52.381 0.00 0.00 0.00 2.87
1518 1569 1.204704 AGTATAAGTGCTGCGCTGTCA 59.795 47.619 17.46 11.15 0.00 3.58
1519 1570 1.324736 GTATAAGTGCTGCGCTGTCAC 59.675 52.381 23.77 23.77 0.00 3.67
1524 1575 3.177920 GCTGCGCTGTCACTCGAG 61.178 66.667 11.84 11.84 0.00 4.04
1538 1590 2.356553 CGAGCGTTGGGTTCCGAA 60.357 61.111 0.00 0.00 0.00 4.30
1543 1595 1.211709 CGTTGGGTTCCGAAATGGC 59.788 57.895 0.00 0.00 37.80 4.40
1549 1601 1.173043 GGTTCCGAAATGGCATGTCA 58.827 50.000 17.51 0.60 37.80 3.58
1556 1608 3.799963 CCGAAATGGCATGTCATTGATTG 59.200 43.478 25.41 14.37 37.42 2.67
1557 1609 4.426416 CGAAATGGCATGTCATTGATTGT 58.574 39.130 25.41 10.02 37.42 2.71
1584 1636 5.011943 TGCTAATATCCCAATGGAATTTGGC 59.988 40.000 0.00 3.45 45.98 4.52
1886 1938 7.010552 GGTATGATCTACCAATAGCTTATTGCG 59.989 40.741 13.43 0.00 43.19 4.85
2037 2089 0.961753 GCACTTGGGGTGGAAAAGAG 59.038 55.000 0.00 0.00 45.44 2.85
2038 2090 1.754201 GCACTTGGGGTGGAAAAGAGT 60.754 52.381 0.00 0.00 45.44 3.24
2044 2096 1.420138 GGGGTGGAAAAGAGTGTGAGA 59.580 52.381 0.00 0.00 0.00 3.27
2073 2125 4.606457 ACGCTAAGATTCAAGATTGTGC 57.394 40.909 0.00 0.00 0.00 4.57
2087 2139 4.401022 AGATTGTGCAAGAGTCCAATTGA 58.599 39.130 7.12 0.00 0.00 2.57
2109 2161 1.163554 GTTCCTTTGCTCTCCTGCTG 58.836 55.000 0.00 0.00 0.00 4.41
2132 2184 2.565834 CCTCCCTTTTCTAGTGAACGGA 59.434 50.000 5.96 3.49 31.02 4.69
2371 2423 2.368221 AGCTGCTAAGAGAAGGGCATAG 59.632 50.000 0.00 0.00 34.12 2.23
2719 2772 6.980978 GCTTCACATGTCAGCTAAACTAGATA 59.019 38.462 16.33 0.00 0.00 1.98
2721 2774 9.539825 CTTCACATGTCAGCTAAACTAGATAAT 57.460 33.333 0.00 0.00 0.00 1.28
2944 2998 0.770166 TGGGATGTGGGGTCACTGAA 60.770 55.000 0.00 0.00 43.94 3.02
3546 3613 7.604545 GCTCAAAACTCAGGTTACTCTCTTTAT 59.395 37.037 0.00 0.00 34.90 1.40
3574 3641 1.903183 GGTATACCTCTGGGCCATCTC 59.097 57.143 15.09 0.00 35.63 2.75
3581 3648 2.103941 CCTCTGGGCCATCTCTTTAGTC 59.896 54.545 6.72 0.00 0.00 2.59
3771 3841 8.414003 TCTCGAAGGTATGCAATATCATATACC 58.586 37.037 11.48 11.48 43.35 2.73
3869 3939 4.038522 GCTAGAATGTCACTAGGATGCTGA 59.961 45.833 0.00 0.00 38.11 4.26
4004 4074 4.916983 TTGCAGCTTAGATTGTTTGTGT 57.083 36.364 0.00 0.00 0.00 3.72
4077 4148 8.866093 TCCTGATATGATTTGCATTGATTGATT 58.134 29.630 0.00 0.00 38.44 2.57
4104 4199 0.543749 ATCAAGCCACCCTAGCTGAC 59.456 55.000 0.00 0.00 40.49 3.51
4523 4648 3.119708 CCTTGCATTGTTTGTAGCTCCTC 60.120 47.826 0.00 0.00 0.00 3.71
4581 4706 1.152830 GGGCCCCAACTCTTGTCAA 59.847 57.895 12.23 0.00 0.00 3.18
4698 4823 7.438757 GCCTAAGCTTCTTTATCTAGTGTTACC 59.561 40.741 0.00 0.00 35.50 2.85
4737 4862 6.701340 TGGAATTTGATAGGTCCATATCTCG 58.299 40.000 0.00 0.00 35.22 4.04
4755 4880 1.555075 TCGCTCAATCTAAAGGGCTGT 59.445 47.619 0.00 0.00 0.00 4.40
5107 5232 0.190815 AGAAGTGGGGGCCATTTTGT 59.809 50.000 4.39 0.00 33.62 2.83
5133 5258 7.103641 TCTTGTAATAACCCACATCTTGTCTC 58.896 38.462 0.00 0.00 0.00 3.36
5237 5378 6.690194 ATCCATTGCTCAGTTCTGATTTAC 57.310 37.500 2.89 0.00 0.00 2.01
5282 5670 3.499338 TGATGAACAGCATTTTCCCACT 58.501 40.909 0.00 0.00 37.34 4.00
5371 7949 7.148205 GCAGTTTGGCATTAATGATCCATTTTT 60.148 33.333 19.73 2.41 35.54 1.94
5420 7999 6.244654 TCATGACAAAAACACCATCTGGATA 58.755 36.000 2.55 0.00 38.94 2.59
5441 8022 8.677300 TGGATATAAAATTGCAGTCTGAAGAAC 58.323 33.333 3.32 0.00 0.00 3.01
5508 8091 5.599999 ACATTATTCTGTCCTCGCTACTT 57.400 39.130 0.00 0.00 0.00 2.24
5509 8092 5.978814 ACATTATTCTGTCCTCGCTACTTT 58.021 37.500 0.00 0.00 0.00 2.66
5521 8104 1.461127 CGCTACTTTGTGACCTGAAGC 59.539 52.381 0.00 0.00 0.00 3.86
5628 8222 4.472470 TCAATTCTGACAGACCCTCATGAT 59.528 41.667 4.15 0.00 0.00 2.45
5632 8226 4.836825 TCTGACAGACCCTCATGATTTTC 58.163 43.478 0.00 0.00 0.00 2.29
5634 8228 3.588842 TGACAGACCCTCATGATTTTCCT 59.411 43.478 0.00 0.00 0.00 3.36
5637 8231 4.768968 ACAGACCCTCATGATTTTCCTTTG 59.231 41.667 0.00 0.00 0.00 2.77
5638 8232 3.766051 AGACCCTCATGATTTTCCTTTGC 59.234 43.478 0.00 0.00 0.00 3.68
5639 8233 2.833943 ACCCTCATGATTTTCCTTTGCC 59.166 45.455 0.00 0.00 0.00 4.52
5803 8412 0.255890 TGATAGCTGTTTGAGGGCCC 59.744 55.000 16.46 16.46 0.00 5.80
5930 8539 4.708421 TCTGTAGTAGCTGTAAATCCCGTT 59.292 41.667 0.00 0.00 0.00 4.44
5983 8593 3.228188 AGAGCTTTGGATTGTGGTTCA 57.772 42.857 0.00 0.00 0.00 3.18
6024 8634 6.894828 TGATCTTTAACTAGTTGCCGTTTTC 58.105 36.000 18.56 7.03 0.00 2.29
6025 8635 6.483974 TGATCTTTAACTAGTTGCCGTTTTCA 59.516 34.615 18.56 9.27 0.00 2.69
6026 8636 6.870971 TCTTTAACTAGTTGCCGTTTTCAT 57.129 33.333 18.56 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 91 3.467776 TTTTTGTTGGCCAAGGCAC 57.532 47.368 21.21 8.63 44.11 5.01
228 232 2.701172 GGGGTTAAGGGAATAGGGGCTA 60.701 54.545 0.00 0.00 0.00 3.93
251 255 5.560724 TCTAGGGTTTTCAGTCAGGAATTG 58.439 41.667 0.00 0.00 0.00 2.32
653 675 4.695231 CGTGGAGGCGTCGTCGTT 62.695 66.667 3.66 0.00 39.49 3.85
836 862 5.237344 GCTTGAGATAAATACGCTCATGGTT 59.763 40.000 0.00 0.00 38.35 3.67
845 871 7.065324 TGTGGTTTAAGGCTTGAGATAAATACG 59.935 37.037 10.69 0.00 0.00 3.06
876 902 4.262617 GGGAGCGTTAAAAGGAAGAGAAT 58.737 43.478 0.00 0.00 0.00 2.40
893 919 2.037381 CGAGGGTTAAGATAAGGGGAGC 59.963 54.545 0.00 0.00 0.00 4.70
896 922 2.037381 GAGCGAGGGTTAAGATAAGGGG 59.963 54.545 0.00 0.00 0.00 4.79
898 924 3.006003 GGAGAGCGAGGGTTAAGATAAGG 59.994 52.174 0.00 0.00 0.00 2.69
1275 1306 4.794648 CCAAGATCCCGCCGGCAA 62.795 66.667 28.98 11.85 0.00 4.52
1422 1470 8.071854 TCCTCCTAAATCCCATTCTAAGACTAA 58.928 37.037 0.00 0.00 0.00 2.24
1423 1471 7.601942 TCCTCCTAAATCCCATTCTAAGACTA 58.398 38.462 0.00 0.00 0.00 2.59
1424 1472 6.453476 TCCTCCTAAATCCCATTCTAAGACT 58.547 40.000 0.00 0.00 0.00 3.24
1514 1565 2.023414 AACCCAACGCTCGAGTGACA 62.023 55.000 31.50 0.00 0.00 3.58
1518 1569 2.342648 GGAACCCAACGCTCGAGT 59.657 61.111 15.13 0.00 0.00 4.18
1519 1570 2.758770 TTCGGAACCCAACGCTCGAG 62.759 60.000 8.45 8.45 0.00 4.04
1524 1575 1.211709 CCATTTCGGAACCCAACGC 59.788 57.895 0.00 0.00 36.56 4.84
1538 1590 3.516300 ACCACAATCAATGACATGCCATT 59.484 39.130 0.80 0.80 37.24 3.16
1543 1595 3.861276 AGCACCACAATCAATGACATG 57.139 42.857 0.00 0.00 0.00 3.21
1549 1601 5.704354 TGGGATATTAGCACCACAATCAAT 58.296 37.500 0.00 0.00 0.00 2.57
1556 1608 4.098914 TCCATTGGGATATTAGCACCAC 57.901 45.455 2.09 0.00 38.64 4.16
1557 1609 4.805140 TTCCATTGGGATATTAGCACCA 57.195 40.909 2.09 0.00 44.48 4.17
1584 1636 2.014128 ACATTGCGATTTAACTCCCCG 58.986 47.619 0.00 0.00 0.00 5.73
1650 1702 4.038361 CGACATCTACAAAGGACATCGAG 58.962 47.826 0.00 0.00 0.00 4.04
1917 1969 8.831550 CATAAAAATGTAGGGTCTTCTTAGCTC 58.168 37.037 0.00 0.00 0.00 4.09
1956 2008 1.372499 CACAAGTGCTGCACCATGC 60.372 57.895 27.74 4.01 45.29 4.06
2066 2118 4.771590 TCAATTGGACTCTTGCACAATC 57.228 40.909 5.42 0.00 32.80 2.67
2073 2125 5.972107 AGGAACAATCAATTGGACTCTTG 57.028 39.130 5.42 5.12 41.96 3.02
2087 2139 2.165998 GCAGGAGAGCAAAGGAACAAT 58.834 47.619 0.00 0.00 0.00 2.71
2109 2161 3.586892 CGTTCACTAGAAAAGGGAGGAC 58.413 50.000 0.00 0.00 39.37 3.85
2371 2423 7.440523 ACATCTCCAATTACAAGAAAGTGTC 57.559 36.000 0.00 0.00 32.75 3.67
2518 2571 2.289002 CGAAAGCCTTCCATCTGTATGC 59.711 50.000 0.00 0.00 0.00 3.14
2655 2708 1.200948 GATGACAAGGAGCAAGCCAAC 59.799 52.381 0.00 0.00 0.00 3.77
2719 2772 4.706476 AGCACCTGCACACAACATATTATT 59.294 37.500 0.00 0.00 45.16 1.40
2721 2774 3.439825 CAGCACCTGCACACAACATATTA 59.560 43.478 0.00 0.00 45.16 0.98
2902 2955 0.890996 CTTCCAACCAGTCACCCTGC 60.891 60.000 0.00 0.00 40.06 4.85
2944 2998 9.271828 CTACCATTGCTTTTTAAAATTTCCTGT 57.728 29.630 0.55 0.00 0.00 4.00
3546 3613 3.054655 GCCCAGAGGTATACCAACTGAAA 60.055 47.826 32.15 0.00 41.59 2.69
3771 3841 5.939457 ACGGATGATATACAGATACACGTG 58.061 41.667 15.48 15.48 0.00 4.49
3853 3923 6.737720 ATTATCTTCAGCATCCTAGTGACA 57.262 37.500 0.00 0.00 0.00 3.58
3869 3939 4.803329 ACCAGATGGGAGCAATTATCTT 57.197 40.909 3.48 0.00 41.15 2.40
3982 4052 5.163571 TGACACAAACAATCTAAGCTGCAAA 60.164 36.000 1.02 0.00 0.00 3.68
4044 4114 9.569167 CAATGCAAATCATATCAGGATACATTC 57.431 33.333 0.00 0.00 34.64 2.67
4077 4148 3.737559 AGGGTGGCTTGATGAATACAA 57.262 42.857 0.00 0.00 0.00 2.41
4427 4552 4.502950 GCCATAAGCTTGCAGAGACTAGAT 60.503 45.833 9.86 0.00 38.99 1.98
4523 4648 4.280174 ACCGTAATGTACCATACTAGCAGG 59.720 45.833 0.00 0.00 0.00 4.85
4581 4706 2.103432 TGTTACGTGGAGTTGTGGACAT 59.897 45.455 0.00 0.00 0.00 3.06
4698 4823 6.923012 TCAAATTCCATGATACCACAAACTG 58.077 36.000 0.00 0.00 0.00 3.16
4737 4862 4.790765 AAAACAGCCCTTTAGATTGAGC 57.209 40.909 0.00 0.00 0.00 4.26
5092 5217 1.055849 AAGAACAAAATGGCCCCCAC 58.944 50.000 0.00 0.00 35.80 4.61
5107 5232 7.458397 AGACAAGATGTGGGTTATTACAAGAA 58.542 34.615 0.00 0.00 0.00 2.52
5237 5378 2.905075 TCGGTCTGCCAAATATCAGTG 58.095 47.619 0.00 0.00 34.09 3.66
5441 8022 4.867047 AGTCTGAGCTTCACATCGTTTATG 59.133 41.667 0.00 0.00 41.74 1.90
5508 8091 3.250762 CAGATTTTCGCTTCAGGTCACAA 59.749 43.478 0.00 0.00 0.00 3.33
5509 8092 2.807967 CAGATTTTCGCTTCAGGTCACA 59.192 45.455 0.00 0.00 0.00 3.58
5521 8104 8.467402 ACTACTTGTTACTGATCAGATTTTCG 57.533 34.615 29.27 14.31 0.00 3.46
5605 8199 3.840078 TCATGAGGGTCTGTCAGAATTGA 59.160 43.478 3.51 0.00 0.00 2.57
5628 8222 3.645212 TCCACATTCATGGCAAAGGAAAA 59.355 39.130 0.00 0.00 39.85 2.29
5632 8226 3.258872 TCTTTCCACATTCATGGCAAAGG 59.741 43.478 0.00 0.00 39.85 3.11
5634 8228 4.952071 TTCTTTCCACATTCATGGCAAA 57.048 36.364 0.00 0.00 39.85 3.68
5637 8231 3.619929 GCATTTCTTTCCACATTCATGGC 59.380 43.478 0.00 0.00 39.85 4.40
5638 8232 4.868171 CAGCATTTCTTTCCACATTCATGG 59.132 41.667 0.00 0.00 41.57 3.66
5639 8233 5.716094 TCAGCATTTCTTTCCACATTCATG 58.284 37.500 0.00 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.